RPSBLAST alignment for GI: 254780553 and conserved domain: TIGR00084

>gnl|CDD|129193 TIGR00084, ruvA, Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. Length = 191
 Score =  103 bits (260), Expect = 2e-23
 Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 15/204 (7%)

Query: 1   MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
           MIG + G +  + +  ++I+V GV Y +  P+     L  +     +F    +R+D   L
Sbjct: 1   MIGFLFGKVIEVSKPKIIIEVNGVGYELQVPMTCAYEL-NLEQKAQVFTHLVVREDAELL 59

Query: 61  FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
           FGF +  +R+ F  L  V GVG ++A+ +LS ++  E V +I  +  K + +IPG+  K 
Sbjct: 60  FGFNTLEERELFKELIKVNGVGPKLALAILSNMSPEEFVYAIETEEVKALVKIPGVGKKT 119

Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
           A R++ ELKGK   L      +M    +         +       ALV+LGY   +   A
Sbjct: 120 AERLLLELKGK---LKGNKNLEMFTPTE---------AARDELFEALVSLGYKPQEIQQA 167

Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
           +  +  K K      Q I  AL+ 
Sbjct: 168 LKKI--KNKPDFAIEQDIEEALKQ 189