RPSBLAST alignment for GI: 254780553 and conserved domain: TIGR00084
>gnl|CDD|129193 TIGR00084, ruvA, Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. Length = 191
Score = 103 bits (260), Expect = 2e-23
Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 15/204 (7%)
Query: 1 MIGKIKGNIEGLYEDYVLIDVQGVCYIIYCPIRTLSCLGKIGDFCTLFVETHMRQDQIRL 60
MIG + G + + + ++I+V GV Y + P+ L + +F +R+D L
Sbjct: 1 MIGFLFGKVIEVSKPKIIIEVNGVGYELQVPMTCAYEL-NLEQKAQVFTHLVVREDAELL 59
Query: 61 FGFLSDLDRQWFMLLQSVQGVGARVAMGVLSRITATELVESIILQNSKVIAQIPGISMKI 120
FGF + +R+ F L V GVG ++A+ +LS ++ E V +I + K + +IPG+ K
Sbjct: 60 FGFNTLEERELFKELIKVNGVGPKLALAILSNMSPEEFVYAIETEEVKALVKIPGVGKKT 119
Query: 121 ASRIMTELKGKAISLSSVVQQDMSCVNKEQAHICSMPSFAINAISALVNLGYGQDQATTA 180
A R++ ELKGK L +M + + ALV+LGY + A
Sbjct: 120 AERLLLELKGK---LKGNKNLEMFTPTE---------AARDELFEALVSLGYKPQEIQQA 167
Query: 181 VVSVLKKEKNIADDSQIIRLALRA 204
+ + K K Q I AL+
Sbjct: 168 LKKI--KNKPDFAIEQDIEEALKQ 189