HHsearch alignment for GI: 254780554 and conserved domain: COG0816
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.0014 Score=43.02 Aligned_cols=128 Identities=21% Similarity=0.241 Sum_probs=73.6
Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHH-HCCCHHHH
Q ss_conf 80699997888720589999719968999833687388999888999999989998622796277885033-20241247
Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVF-VNKDAVAT 82 (169)
Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F-~~~n~~t~ 82 (169)
T Consensus 1 ~~~ilalD~G~KrIGvA~sd~~~~~A~pl--~~i~~~~~~~------~~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~- 71 (141)
T COG0816 1 GMRILALDVGTKRIGVAVSDILGSLASPL--ETIKRKNGKP------QDFNALLKLVKEYQVDTVVVGLPLNMDGTEGP- 71 (141)
T ss_pred CCEEEEEECCCCEEEEEEECCCCCCCCCH--HHEEECCCCH------HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCH-
T ss_conf 96499996278748899764777521241--4302033537------56999999999838887999667688887134-
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 88999999999999860161775260677765316888899999999999628899999556789999999
Q gi|254780554|r 83 LKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVC 153 (169)
Q Consensus 83 ~~lg~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~~~~~D~aDAlAiAl~ 153 (169)
T Consensus 72 -~~~~~~~f~~~L~~r~~lpv~l~DERl-----------tTv~A~~~L~~-~~~~~~~rk~~iD~~AA~~I 129 (141)
T COG0816 72 -RAELARKFAERLKKRFNLPVVLWDERL-----------STVEAERMLIE-AGVSRKKRKGVIDSLAAVLI 129 (141)
T ss_pred -HHHHHHHHHHHHHHHCCCCEEEECCCC-----------CHHHHHHHHHH-CCCCHHHHCCHHHHHHHHHH
T ss_conf -699999999999876498789981865-----------79999999997-58734443414389999999