HHsearch alignment for GI: 254780554 and conserved domain: pfam02075

>pfam02075 RuvC Crossover junction endodeoxyribonuclease RuvC.
Probab=100.00  E-value=0  Score=366.84  Aligned_cols=147  Identities=42%  Similarity=0.688  Sum_probs=142.4

Q ss_pred             EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHH
Q ss_conf             99997888720589999719968999833687388999888999999989998622796277885033202412478899
Q gi|254780554|r    7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLG   86 (169)
Q Consensus         7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg   86 (169)
T Consensus         1 ILGIDPGl~~tG~avi~~~~~~~~~v~~G~I~t~~-~~~~~RL~~I~~~l~~ii~~~~P~~~aiE~~F~~~N~~ta~~lg   79 (148)
T pfam02075         1 ILGIDPGSRVTGYGVIEHRGRQLSYLTSGVIRTQS-DPLPERLLAIFDAVEEVLDTHQPNAVAIEQVFFAKNVDSALKLA   79 (148)
T ss_pred             CEEECCCCCCEEEEEEEEECCEEEEEEEEEEECCC-CCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHCCHHHHHHHH
T ss_conf             98878886860799999759847999951597899-88799999999999999996499867475877712869999999


Q ss_pred             HHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHH
Q ss_conf             9999999999860161775260677765316888899999999999628899-9995567899999997
Q gi|254780554|r   87 QARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCH  154 (169)
Q Consensus        87 ~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~-~~~~D~aDAlAiAl~h  154 (169)
T Consensus        80 qaRGvill~~~~~~i~v~ey~P~~VKk~itG~G~A~KeQV~~mV~~ll~l~~~~~~~D~aDAlAiAicH  148 (148)
T pfam02075        80 QARGVAILAAAERGISVFEYTPSQVKKAVTGNGSADKRQVQHMVKRLLNLTAKPQPADAADALALAITH  148 (148)
T ss_pred             HHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
T ss_conf             999999999998079805788899888873798587999999999980989899986689999999849