HHsearch alignment for GI: 254780554 and conserved domain: pfam02075
>pfam02075 RuvC Crossover junction endodeoxyribonuclease RuvC.
Probab=100.00 E-value=0 Score=366.84 Aligned_cols=147 Identities=42% Similarity=0.688 Sum_probs=142.4
Q ss_pred EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHH
Q ss_conf 99997888720589999719968999833687388999888999999989998622796277885033202412478899
Q gi|254780554|r 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLG 86 (169)
Q Consensus 7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg 86 (169)
T Consensus 1 ILGIDPGl~~tG~avi~~~~~~~~~v~~G~I~t~~-~~~~~RL~~I~~~l~~ii~~~~P~~~aiE~~F~~~N~~ta~~lg 79 (148)
T pfam02075 1 ILGIDPGSRVTGYGVIEHRGRQLSYLTSGVIRTQS-DPLPERLLAIFDAVEEVLDTHQPNAVAIEQVFFAKNVDSALKLA 79 (148)
T ss_pred CEEECCCCCCEEEEEEEEECCEEEEEEEEEEECCC-CCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHCCHHHHHHHH
T ss_conf 98878886860799999759847999951597899-88799999999999999996499867475877712869999999
Q ss_pred HHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHH
Q ss_conf 9999999999860161775260677765316888899999999999628899-9995567899999997
Q gi|254780554|r 87 QARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCH 154 (169)
Q Consensus 87 ~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~-~~~~D~aDAlAiAl~h 154 (169)
T Consensus 80 qaRGvill~~~~~~i~v~ey~P~~VKk~itG~G~A~KeQV~~mV~~ll~l~~~~~~~D~aDAlAiAicH 148 (148)
T pfam02075 80 QARGVAILAAAERGISVFEYTPSQVKKAVTGNGSADKRQVQHMVKRLLNLTAKPQPADAADALALAITH 148 (148)
T ss_pred HHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
T ss_conf 999999999998079805788899888873798587999999999980989899986689999999849