HHsearch alignment for GI: 254780554 and conserved domain: pfam04848
>pfam04848 Pox_A22 Poxvirus A22 protein.
Probab=98.06 E-value=5.2e-05 Score=51.85 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=78.4
Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHC-CCHHHHH
Q ss_conf 069999788872058999971996899983368738899988899999998999862279627788503320-2412478
Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN-KDAVATL 83 (169)
Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~-~n~~t~~ 83 (169)
T Consensus 1 miIlSiDiGiKNlA~c~~e~~~n~I~~~~v~--~~d~~~d~~~~---v---~~d~~-~~~~d~VLiEkQp~r~~~~k~-- 69 (143)
T pfam04848 1 MIICAIDIGTKNPARTIIEIKDNKIKLIDIS--KLDWSSDWEYR---V---ARDLY-NYNYDVVLLERQGRRSPNIKF-- 69 (143)
T ss_pred CEEEEEECCCCCCEEEEEECCCCEEEEEEEE--CCCCCCCHHHH---H---HHHHH-CCCCCEEEEEECCCCCCCEEE--
T ss_conf 9799984277770158997379849999860--48988527999---9---99974-358998999607999984764--
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHC-CCCCCCHHHHHHHHHHHC---CCC-----CCCCCCHHHHHHHHHHH
Q ss_conf 899999999999986016177526067776531-688889999999999962---889-----99995567899999997
Q gi|254780554|r 84 KLGQARAIAILSPALARIPVSEYAPNTIKKAVI-GVGHGDKKQIHMMLKMLM---PES-----FFKGKDAADALAIAVCH 154 (169)
Q Consensus 84 ~lg~arGvi~l~~~~~~i~v~ey~P~~vKkavt-G~G~A~KeqV~~mV~~ll---~~~-----~~~~~D~aDAlAiAl~h 154 (169)
T Consensus 70 -i~fi~g~----fy~~~~kvi~~~p~-----~~g~~Y~~RKk~SI~~~~~~l~~~~~~~~~~k~kKkDDlADs~~~Al~Y 139 (143)
T pfam04848 70 -IYFIKGF----LYNKQTKVICVNPV-----MNGGSYRDRKKRSVNIFLNWMSVFGINDILPKYKKLDDVADSFNLALRY 139 (143)
T ss_pred -HHHHHHH----HCCCCCCEEEECCC-----CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf -1335658----21677757870843-----4576688888999999999999759932121112213589999999998
Q ss_pred H
Q ss_conf 6
Q gi|254780554|r 155 A 155 (169)
Q Consensus 155 ~ 155 (169)
T Consensus 140 ~ 140 (143)
T pfam04848 140 L 140 (143)
T ss_pred H
T ss_conf 7