HHsearch alignment for GI: 254780554 and conserved domain: pfam09159

>pfam09159 Ydc2-catalyt Mitochondrial resolvase Ydc2, catalytic. Members of this family adopt a secondary structure consisting of two beta sheets and one alpha helix, arranged as a beta-alpha-beta motif. Each beta sheet has five strands, arranged in a 32145 order, with the second strand being antiparallel to the rest. They are capable of resolving Holliday junctions and cleave DNA after 5'-CT-3' and 5'-TT-3' sequences.
Probab=96.69  E-value=0.061  Score=32.89  Aligned_cols=112  Identities=13%  Similarity=0.148  Sum_probs=70.8

Q ss_pred             EEEECCCCCEEEEEEEEEECC-----EEEEEEEEEEECCCC--------------CCH-HHHHHHH-HHHHHHHHHCCCC
Q ss_conf             999978887205899997199-----689998336873889--------------998-8899999-9989998622796
Q gi|254780554|r    7 IIGIDPGLRRTGWGIVDVAGD-----NLCFVSSGTIVSCVR--------------QSL-AFRLCQL-YEGLTDVIKNWRP   65 (169)
Q Consensus         7 ILGIDPGl~~tG~avie~~~~-----~~~li~~g~I~t~~~--------------~~~-~~Rl~~I-~~~l~~ii~~~~P   65 (169)
T Consensus         1 ILsIDmGIkNfAf~~l~~~~~~~~~~~p~L~~W~kl~L~~~~~~~~~~~~~~~~~~~fsp~~~a~~Ay~Lv~~ll~~~~P   80 (253)
T pfam09159         1 ILSIDMGIKNFSYCKLLLPPDSKLKSPPILTAWRKLDLSEKFGSDNLDLTNEKDSLDFSPRYLATLAYNLVSTLLLPYKP   80 (253)
T ss_pred             CCEEECCCCCEEEEEEECCCCCCCCCCCEEEECCEEECCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             91363274200114663378766789976330000102011054456643343444459899999999999998434799


Q ss_pred             CEEEEEHHHHCCCHH-----HHHHHHHHHHHHHHHHH---H------CCCCEEEECHHHHHHHHCCC
Q ss_conf             277885033202412-----47889999999999998---6------01617752606777653168
Q gi|254780554|r   66 EEAAVEQVFVNKDAV-----ATLKLGQARAIAILSPA---L------ARIPVSEYAPNTIKKAVIGV  118 (169)
Q Consensus        66 d~vaiE~~F~~~n~~-----t~~~lg~arGvi~l~~~---~------~~i~v~ey~P~~vKkavtG~  118 (169)
T Consensus        81 t~ilIERQRfRS~g~saVlEwtLrvn~lE~ML~A~L~~l~~~~~~~~~~~~V~~v~P~rv~~yW~~~  147 (253)
T pfam09159        81 THVLIERQRFRSGGSSAVLEWTLRVNMLESMLYATLYALKQNSEEGVWPGVVIPVDPKRVVNYWVDR  147 (253)
T ss_pred             CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHCC
T ss_conf             8899976311468986544047888589999999999998725457778579972868889974165