HHsearch alignment for GI: 254780554 and conserved domain: pfam09159
>pfam09159 Ydc2-catalyt Mitochondrial resolvase Ydc2, catalytic. Members of this family adopt a secondary structure consisting of two beta sheets and one alpha helix, arranged as a beta-alpha-beta motif. Each beta sheet has five strands, arranged in a 32145 order, with the second strand being antiparallel to the rest. They are capable of resolving Holliday junctions and cleave DNA after 5'-CT-3' and 5'-TT-3' sequences.
Probab=96.69 E-value=0.061 Score=32.89 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=70.8
Q ss_pred EEEECCCCCEEEEEEEEEECC-----EEEEEEEEEEECCCC--------------CCH-HHHHHHH-HHHHHHHHHCCCC
Q ss_conf 999978887205899997199-----689998336873889--------------998-8899999-9989998622796
Q gi|254780554|r 7 IIGIDPGLRRTGWGIVDVAGD-----NLCFVSSGTIVSCVR--------------QSL-AFRLCQL-YEGLTDVIKNWRP 65 (169)
Q Consensus 7 ILGIDPGl~~tG~avie~~~~-----~~~li~~g~I~t~~~--------------~~~-~~Rl~~I-~~~l~~ii~~~~P 65 (169)
T Consensus 1 ILsIDmGIkNfAf~~l~~~~~~~~~~~p~L~~W~kl~L~~~~~~~~~~~~~~~~~~~fsp~~~a~~Ay~Lv~~ll~~~~P 80 (253)
T pfam09159 1 ILSIDMGIKNFSYCKLLLPPDSKLKSPPILTAWRKLDLSEKFGSDNLDLTNEKDSLDFSPRYLATLAYNLVSTLLLPYKP 80 (253)
T ss_pred CCEEECCCCCEEEEEEECCCCCCCCCCCEEEECCEEECCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 91363274200114663378766789976330000102011054456643343444459899999999999998434799
Q ss_pred CEEEEEHHHHCCCHH-----HHHHHHHHHHHHHHHHH---H------CCCCEEEECHHHHHHHHCCC
Q ss_conf 277885033202412-----47889999999999998---6------01617752606777653168
Q gi|254780554|r 66 EEAAVEQVFVNKDAV-----ATLKLGQARAIAILSPA---L------ARIPVSEYAPNTIKKAVIGV 118 (169)
Q Consensus 66 d~vaiE~~F~~~n~~-----t~~~lg~arGvi~l~~~---~------~~i~v~ey~P~~vKkavtG~ 118 (169)
T Consensus 81 t~ilIERQRfRS~g~saVlEwtLrvn~lE~ML~A~L~~l~~~~~~~~~~~~V~~v~P~rv~~yW~~~ 147 (253)
T pfam09159 81 THVLIERQRFRSGGSSAVLEWTLRVNMLESMLYATLYALKQNSEEGVWPGVVIPVDPKRVVNYWVDR 147 (253)
T ss_pred CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHCC
T ss_conf 8899976311468986544047888589999999999998725457778579972868889974165