HHsearch alignment for GI: 254780554 and conserved domain: smart00732
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=97.80 E-value=0.00022 Score=47.91 Aligned_cols=89 Identities=21% Similarity=0.274 Sum_probs=55.1
Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHH
Q ss_conf 69999788872058999971996899983368738899988899999998999862279627788503320241247889
Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKL 85 (169)
Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~l 85 (169)
T Consensus 2 rvLgiD~G~kriG~Ai~D~~~~~a~pl--~~i~~~-------~~~~~~~~l~~~i~~~~~~~iviG~P~~~~g~~~~~~- 71 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGKLADPL--EVIPRT-------NKEADAARLKKLIKKYQPDLIVIGLPLNMNGTASRET- 71 (99)
T ss_pred CEEEEEECCCCEEEEEEECCCCEECCC--EEEECC-------CCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHH-
T ss_conf 799992178969999998999732131--899859-------8269999999999984998899747524899819999-
Q ss_pred HHHHHHHHHHHHHCCCCEEEE
Q ss_conf 999999999998601617752
Q gi|254780554|r 86 GQARAIAILSPALARIPVSEY 106 (169)
Q Consensus 86 g~arGvi~l~~~~~~i~v~ey 106 (169)
T Consensus 72 -~-~~f~~~l~~~~~i~v~~~ 90 (99)
T smart00732 72 -E-EAFAELLKERFNLPVVLV 90 (99)
T ss_pred -H-HHHHHHHHHCCCCCEEEE
T ss_conf -9-999999851789988999