Query         gi|254780554|ref|YP_003064967.1| Holliday junction resolvase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 169
No_of_seqs    124 out of 1248
Neff          6.5 
Searched_HMMs 33803
Date          Wed Jun  1 19:46:57 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780554.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1hjr_A Holliday junction reso 100.0       0       0  304.6  20.4  156    6-162     2-157 (158)
  2 >1vhx_A Putative holliday junc  99.8 2.8E-19 8.4E-24  139.4   8.6  116    3-126     1-120 (150)
  3 >1kcf_A Hypothetical 30.2 KD p  98.6 1.5E-06 4.5E-11   60.9  12.1  153    2-154    37-238 (258)
  4 >1nu0_A Hypothetical protein Y  98.2   2E-05 5.9E-10   54.0   9.3   93    4-106     2-94  (138)
  5 >3bzc_A TEX; helix-turn-helix,  98.2 1.2E-05 3.5E-10   55.4   8.1  126    4-154     3-129 (142)
  6 >1iv0_A Hypothetical protein;   98.0 7.4E-06 2.2E-10   56.7   4.9   91    5-106     1-91  (98)
  7 >3i8b_A Xylulose kinase; strai  97.0  0.0015 4.3E-08   42.5   5.8  135    4-157     2-141 (163)
  8 >3en9_A Glycoprotease, O-sialo  97.0   0.026 7.8E-07   34.7  12.0  101    2-110     3-113 (165)
  9 >2a6a_A Hypothetical protein T  96.4   0.016 4.6E-07   36.2   7.2   96    1-109     9-106 (149)
 10 >3c6a_A Terminase large subuni  96.3   0.071 2.1E-06   32.1  10.3   65    5-76     60-128 (232)
 11 >3eno_A Putative O-sialoglycop  96.1   0.036 1.1E-06   33.9   7.9  102    2-111     3-115 (173)
 12 >2ivn_A O-sialoglycoprotein en  96.0   0.067   2E-06   32.3   8.8  100    5-111     1-110 (166)
 13 >2gel_A Putative GRAM negative  95.9   0.078 2.3E-06   31.8   8.8   93    5-109     1-95  (135)
 14 >1saz_A Probable butyrate kina  94.3    0.13   4E-06   30.4   6.0  105    4-111     1-132 (221)
 15 >2e1z_A Propionate kinase; TDC  93.7    0.27   8E-06   28.5   6.7   70    1-72     14-100 (195)
 16 >1t6c_A Exopolyphosphatase; al  93.6    0.58 1.7E-05   26.5  10.6   99    2-109     9-120 (153)
 17 >1zc6_A Probable N-acetylgluco  93.2    0.35   1E-05   27.8   6.5   60    5-67     11-71  (147)
 18 >3hi0_A Putative exopolyphosph  93.0    0.67   2E-05   26.1   7.7   69    1-69     11-89  (121)
 19 >3cpe_A Terminase, DNA packagi  92.9    0.75 2.2E-05   25.8   7.9   64    6-76     38-105 (209)
 20 >2qm1_A Glucokinase; alpha-bet  92.9    0.36 1.1E-05   27.8   6.2   59    5-66      6-64  (150)
 21 >2hoe_A N-acetylglucosamine ki  92.8    0.31 9.1E-06   28.2   5.8   57    5-64      2-58  (149)
 22 >3gbt_A Gluconate kinase; LBA0  92.8    0.79 2.3E-05   25.7   8.3   65    3-70      1-74  (237)
 23 >2e2o_A Hexokinase; acetate an  92.7    0.36 1.1E-05   27.7   6.0   67    4-75      1-70  (130)
 24 >3khy_A Propionate kinase; csg  92.2    0.85 2.5E-05   25.5   7.5   67    6-74      3-88  (172)
 25 >1sz2_A Glucokinase, glucose k  92.2    0.42 1.2E-05   27.4   5.9   58    1-67     10-67  (141)
 26 >2ch5_A NAGK protein; transfer  92.2    0.33 9.9E-06   27.9   5.3   58    6-66      7-66  (153)
 27 >2aa4_A Mannac kinase, putativ  92.2    0.43 1.3E-05   27.3   5.9   58    5-69      1-58  (134)
 28 >1hux_A Activator of (R)-2-hyd  91.7    0.02 5.8E-07   35.5  -1.4   81    4-93      2-92  (127)
 29 >3eo3_A Bifunctional UDP-N-ace  91.1     1.1 3.2E-05   24.8   7.0   59    2-65     17-75  (163)
 30 >2iir_A Acetate kinase; transf  90.4    0.99 2.9E-05   25.0   6.2   68    5-74      1-93  (182)
 31 >1nbw_A Glycerol dehydratase r  88.1     1.2 3.5E-05   24.6   5.3   60    6-65      3-62  (124)
 32 >1u6z_A Exopolyphosphatase; al  88.1     2.1 6.1E-05   23.1   7.0   66    3-68      9-84  (117)
 33 >3g25_A Glycerol kinase; IDP00  87.7     2.2 6.5E-05   22.9   6.5   58    6-66      7-72  (109)
 34 >1z05_A Transcriptional regula  87.5     1.9 5.5E-05   23.3   6.0   57    6-66      4-60  (111)
 35 >3h3n_X Glycerol kinase; ATP-b  87.2     2.3 6.9E-05   22.7   7.4   63    1-66      1-71  (107)
 36 >1z6r_A MLC protein; transcrip  87.0     1.3 3.9E-05   24.2   5.0   57    6-66      4-60  (112)
 37 >3djc_A Type III pantothenate   86.6    0.85 2.5E-05   25.5   3.9   62    6-76      3-64  (147)
 38 >2itm_A Xylulose kinase, xylul  85.5    0.99 2.9E-05   25.0   3.7   58    7-67      2-67  (231)
 39 >3cer_A Possible exopolyphosph  83.8     3.4  0.0001   21.7  10.3  100    2-110    13-126 (158)
 40 >2dpn_A Glycerol kinase; therm  83.2       2 5.9E-05   23.2   4.5   60    5-64      1-66  (241)
 41 >3bex_A Type III pantothenate   82.7     3.6 0.00011   21.6   5.6   58    7-72      5-64  (134)
 42 >3htv_A D-allose kinase, allok  82.6     1.4 4.1E-05   24.1   3.5   63    5-71      7-69  (156)
 43 >1g99_A Acetate kinase; alpha/  81.7       3   9E-05   22.0   4.9   32    5-38      1-32  (189)
 44 >3lm2_A Putative kinase; struc  80.3     3.5  0.0001   21.7   4.9   58    6-74      7-64  (99)
 45 >2gup_A ROK family protein; su  79.8     1.1 3.4E-05   24.7   2.2   62    5-75      4-65  (134)
 46 >1e4f_T Cell division protein   79.4     4.9 0.00014   20.8   6.1   41    1-41      4-44  (108)
 47 >3hz6_A Xylulokinase; xylulose  79.4     2.6 7.8E-05   22.4   4.0   65    3-70      3-77  (241)
 48 >1ig8_A Hexokinase PII, hexoki  73.4     6.8  0.0002   19.9   4.8  121    3-130     4-149 (165)
 49 >1vgv_A UDP-N-acetylglucosamin  72.8     7.4 0.00022   19.7   6.9   79   39-133    61-141 (213)
 50 >3epq_A Putative fructokinase;  71.9     6.4 0.00019   20.0   4.3   59    5-73      3-61  (147)
 51 >1v4v_A UDP-N-acetylglucosamin  71.0     8.1 0.00024   19.4   7.0   79   39-133    66-146 (204)
 52 >3dzc_A UDP-N-acetylglucosamin  70.1     8.5 0.00025   19.3   6.8   78   40-133    87-166 (211)
 53 >2ap1_A Putative regulator pro  68.4     9.3 0.00027   19.1   7.9   65    3-71     22-87  (143)
 54 >3i33_A Heat shock-related 70   67.3     3.2 9.3E-05   21.9   2.0   20    4-23     22-41  (230)
 55 >3beo_A UDP-N-acetylglucosamin  64.9      11 0.00032   18.6   7.2   55   41-107    72-126 (211)
 56 >2w40_A Glycerol kinase, putat  64.1      11 0.00033   18.5   8.0   64    4-67      2-75  (110)
 57 >3l0q_A Xylulose kinase; xlylu  62.6      12 0.00035   18.4   5.5   56    6-64      6-69  (297)
 58 >3ifr_A Carbohydrate kinase, F  60.1      13 0.00039   18.1   7.3   62    1-65      3-72  (242)
 59 >1yuw_A Heat shock cognate 71   59.1     4.4 0.00013   21.1   1.4   18    6-23      5-22  (215)
 60 >2ews_A Pantothenate kinase; P  55.4      13 0.00038   18.2   3.3   54    3-72     18-71  (120)
 61 >2h3g_X Biosynthetic protein;   54.8      16 0.00048   17.5   7.9   89    7-109     2-91  (121)
 62 >2d4w_A Glycerol kinase; alpha  54.2      17 0.00049   17.5   6.1   57    6-65      3-67  (244)
 63 >1zbs_A Hypothetical protein P  53.6     7.5 0.00022   19.6   1.9   46    6-57      1-46  (129)
 64 >2kho_A Heat shock protein 70;  53.1     9.6 0.00029   18.9   2.4   18    6-23      3-20  (163)
 65 >1dkg_D Molecular chaperone DN  52.1     7.9 0.00023   19.5   1.8   18    6-23      3-20  (161)
 66 >2v7y_A Chaperone protein DNAK  50.2      13 0.00037   18.2   2.6   18    6-23      3-20  (183)
 67 >1woq_A Inorganic polyphosphat  47.4      21 0.00063   16.8   8.3   54    6-62     13-68  (143)
 68 >3jvp_A Ribulokinase; PSI-II,   45.8      23 0.00067   16.7   5.3   62    3-66      3-83  (224)
 69 >2z1c_A Hydrogenase expression  45.3      23 0.00068   16.6   4.0   59    3-61      5-73  (75)
 70 >3js6_A Uncharacterized PARM p  43.7      17  0.0005   17.4   2.4   18    4-21      3-20  (214)
 71 >2zf5_O Glycerol kinase; hyper  43.3      25 0.00073   16.4   6.5   55    7-64      5-67  (238)
 72 >1qh5_A Glyoxalase II, protein  40.7      27  0.0008   16.2   3.2   32    5-36      1-32  (90)
 73 >2p3r_A Glycerol kinase; glyce  39.0      29 0.00085   16.0   7.3   57    6-65      4-68  (510)
 74 >2fsj_A Hypothetical protein T  32.3      28 0.00084   16.1   2.1   19    3-21     19-37  (212)
 75 >1jce_A ROD shape-determining   30.7      30  0.0009   15.9   2.0  102    6-119     4-140 (175)
 76 >1zwx_A SMCL, sphingomyelinase  29.3      41  0.0012   15.1   3.7   50   25-74      7-56  (301)
 77 >1xm8_A Glyoxalase II; structu  29.3      41  0.0012   15.1   2.5   32    5-36      1-32  (92)
 78 >2d0o_A DIOL dehydratase-react  29.1      42  0.0012   15.0   7.5   59    6-64      3-62  (131)
 79 >3cqy_A Anhydro-N-acetylmurami  28.9      42  0.0012   15.0   6.8  124    3-130     3-158 (190)
 80 >1bdg_A Hexokinase; phosphotra  28.7      42  0.0013   15.0   7.0   64    4-67      6-73  (152)
 81 >2yhx_A Hexokinase B; transfer  26.2      47  0.0014   14.7   8.4   63    4-66      6-71  (173)
 82 >2bh9_A G6PD, glucose-6-phosph  25.2      49  0.0014   14.6   4.2   21   66-87    139-159 (178)
 83 >1dpg_A G6PD, glucose 6-phosph  25.1      49  0.0015   14.6   3.9   15   53-67     55-69  (182)
 84 >3hm8_A Hexokinase-3; glucose,  24.4      51  0.0015   14.5   5.9   65    2-66      3-68  (154)
 85 >2a6a_A Hypothetical protein T  22.4      43  0.0013   14.9   1.6   21   54-74     49-69  (69)
 86 >1mio_B Nitrogenase molybdenum  22.1      56  0.0017   14.2   3.0   53   49-107    46-103 (108)

No 1  
>>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} (A:)
Probab=100.00  E-value=0  Score=304.61  Aligned_cols=156  Identities=40%  Similarity=0.668  Sum_probs=150.6

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHH
Q ss_conf             69999788872058999971996899983368738899988899999998999862279627788503320241247889
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKL   85 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~l   85 (169)
                      ||||||||+++||||++|.++++++++++|+|+++ +.+.++|+..|++.+.+++++|+|+.|+||++||++|+++++++
T Consensus         2 rvLgiDpg~~~tG~av~~~~~~~~~~i~~g~i~~~-~~~~~~R~~~i~~~l~~~l~~~~p~~v~iE~~~~~~~~~s~~~l   80 (158)
T 1hjr_A            2 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKL   80 (158)
T ss_dssp             EEEEEECCSSEEEEEEEEEETTEEEEEEEEEEECC-CSCHHHHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHH
T ss_pred             EEEEECCCCCCEEEEEEEEECCEEEEEEEEEEECC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCHHHHHHH
T ss_conf             89998457784689999966997899995348459-87779999999999999986359866999841221573578889


Q ss_pred             HHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHH
Q ss_conf             99999999999860161775260677765316888899999999999628899999556789999999764168756
Q gi|254780554|r   86 GQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY  162 (169)
Q Consensus        86 g~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~~~~~D~aDAlAiAl~h~~~~~~~~  162 (169)
                      ++++|++++++.++++|+.+|+|+++||++||+|+|+||||++||+++++...++++|++||+|+|+||+++.++.+
T Consensus        81 ~~~~G~i~~~~~~~~ipi~~v~P~~vKk~~tG~G~A~Ke~v~~~v~~~~~~~~~~~dd~aDA~aia~~~~~~~~~~~  157 (158)
T 1hjr_A           81 GQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAM  157 (158)
T ss_dssp             HHHHHHHHHHHHTTTCCEEEEEHHHHHHHHTSSSSCCHHHHHHHHHHHTTCCCCCSSCTHHHHHHHHHHHHTTSSSC
T ss_pred             HHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999975973899768998876105997799999999999839899999987999999999988734657


No 2  
>>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} (A:)
Probab=99.79  E-value=2.8e-19  Score=139.38  Aligned_cols=116  Identities=18%  Similarity=0.192  Sum_probs=97.1

Q ss_pred             CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHH
Q ss_conf             88069999788872058999971996899983368738899988899999998999862279627788503320241247
Q gi|254780554|r    3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVAT   82 (169)
Q Consensus         3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~   82 (169)
                      .+|||||||||+++||||+.|..+.-...  .+++...+..     ...+++.|.+++++|+|+.++||.+|..++..+.
T Consensus         1 ~~mriLgiD~G~~riG~Av~d~~~~~a~~--l~~i~~~~~~-----~~~~~~~L~~ii~~~~~~~iviG~p~~~~g~~~~   73 (150)
T 1vhx_A            1 XSLRILGLDLGTKTLGVALSDEXGWTAQG--IETIKINEAE-----GDYGLSRLSELIKDYTIDKIVLGFPKNXNGTVGP   73 (150)
T ss_dssp             -CEEEEEEEECSSEEEEEEECTTSSSEEE--EEEEECBGGG-----TBCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCH
T ss_pred             CCCEEEEEEECCCEEEEEEECCCCCCCCC--EEEEEECCCC-----CHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHH
T ss_conf             98439999927998999997389884356--0446503456-----2268999999997634362885164234776217


Q ss_pred             HHHHHHHHHHHHHHHHCCCCEE----EECHHHHHHHHCCCCCCCHHHH
Q ss_conf             8899999999999986016177----5260677765316888899999
Q gi|254780554|r   83 LKLGQARAIAILSPALARIPVS----EYAPNTIKKAVIGVGHGDKKQI  126 (169)
Q Consensus        83 ~~lg~arGvi~l~~~~~~i~v~----ey~P~~vKkavtG~G~A~KeqV  126 (169)
                       ...++|+.+...+.+.++||+    .|+|.++|+.++|+|.+.|+|-
T Consensus        74 -~~~~~~~~~~~l~~~~~i~v~~~dE~~ss~~a~~~l~~~g~~~k~~k  120 (150)
T 1vhx_A           74 -RGEASQTFAKVLETTYNVPVVLWDERLTTXAAEKXLIAADVSRQKRK  120 (150)
T ss_dssp             -HHHHHHHHHHHHHHHHCSCEEEECCSSCHHHHHHHHHHTTCCHHHHH
T ss_pred             -HHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCC
T ss_conf             -88999999997355778327984155579999999997599700034


No 3  
>>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} (A:)
Probab=98.59  E-value=1.5e-06  Score=60.92  Aligned_cols=153  Identities=15%  Similarity=0.110  Sum_probs=94.2

Q ss_pred             CCCCEEEEECCCCCEEEEEEEEEEC-CEEEEEEEEEEECCCC----------CCHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             9880699997888720589999719-9689998336873889----------9988899999998999862279627788
Q gi|254780554|r    2 RKSIRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVR----------QSLAFRLCQLYEGLTDVIKNWRPEEAAV   70 (169)
Q Consensus         2 ~~~MrILGIDPGl~~tG~avie~~~-~~~~li~~g~I~t~~~----------~~~~~Rl~~I~~~l~~ii~~~~Pd~vai   70 (169)
                      +..++||+||.|+.+..||.++.+. ..+.++++..+.....          .....=....++-++.++..|+||++.|
T Consensus        37 ~~~~sIlSID~GikNlA~~~l~~~~~~~~~i~~W~kl~l~~~~~~~~~~~~~~~p~~~s~~a~~lis~li~~~~pd~vlI  116 (258)
T 1kcf_A           37 YPTSRVLGIDLGIKNFSYCFASQNEDSKVIIHNWSVENLTEKNGLDIQWTEDFQPSSMADLSIQLFNTLHEKFNPHVILM  116 (258)
T ss_dssp             CCCSSEEEEEECSTTEEEEEEEECTTSCEEEEEEEEECTTSCCTTCCCCCCCCSHHHHHHHHHHHHHHHHHHHCCSEEEE
T ss_pred             CCCCCEEEEECCCHHHEEEEECCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             89983789973710200024513789875567600522266667542124568859999999999998764326998997


Q ss_pred             EHHHHCC-CHH---HHHHHHHHHHHHHHHH----------HHCCCCEEEECHHHHHHHH-----CCCCCCCHHHHHHHHH
Q ss_conf             5033202-412---4788999999999999----------8601617752606777653-----1688889999999999
Q gi|254780554|r   71 EQVFVNK-DAV---ATLKLGQARAIAILSP----------ALARIPVSEYAPNTIKKAV-----IGVGHGDKKQIHMMLK  131 (169)
Q Consensus        71 E~~F~~~-n~~---t~~~lg~arGvi~l~~----------~~~~i~v~ey~P~~vKkav-----tG~G~A~KeqV~~mV~  131 (169)
                      |.+=|.. |..   .++.++-.-+.+...+          ...+..|....|..|-++-     ....+..|.-=..+|+
T Consensus       117 ErQr~Rs~~sav~e~~Lrv~ilE~mLya~l~~~~~~~~~~~~~~~~V~~v~p~~v~~yw~~~~~~~s~~~~Kk~~i~lv~  196 (258)
T 1kcf_A          117 ERQRYRSGIATIPEWTLRVNMLESMLYALHYAEKRNSIEQKIQYPFLLSLSPKSTYSYWASVLNTKASFSKKKSRVQMVK  196 (258)
T ss_dssp             EECCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHC-------CCEEEECCHHHHHHHHHHHHC-------CCCHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf             64666567650346678899999999999998620033444662147765777888875113455553420399999999


Q ss_pred             HHCC-------------------CCCCCCCCHHHHHHHHHHH
Q ss_conf             9628-------------------8999995567899999997
Q gi|254780554|r  132 MLMP-------------------ESFFKGKDAADALAIAVCH  154 (169)
Q Consensus       132 ~ll~-------------------~~~~~~~D~aDAlAiAl~h  154 (169)
                      .++.                   ....|.||.+|++=-|++-
T Consensus       197 ~~l~~~~~~~~~~~~~~~~~~~~~~~~K~DDLaDslLqala~  238 (258)
T 1kcf_A          197 ELIDGQKILFENEEALYKWNNGSRVEFKKDDMADSALIASGW  238 (258)
T ss_dssp             HHHHTTSEEESSHHHHHHHHHCCSTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             998605223676267899998612678743467689999999


No 4  
>>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} (A:)
Probab=98.15  E-value=2e-05  Score=53.99  Aligned_cols=93  Identities=15%  Similarity=0.124  Sum_probs=61.5

Q ss_pred             CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHH
Q ss_conf             80699997888720589999719968999833687388999888999999989998622796277885033202412478
Q gi|254780554|r    4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATL   83 (169)
Q Consensus         4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~   83 (169)
                      +-||||||||..+||+|+.|..+.-..  ..+++..+.....       .+.|.+++.+|+|+.++|--|.-..+..+. 
T Consensus         2 ~krilgiD~G~kriGiAi~d~~~~ia~--p~~~i~~~~~~~~-------~~~l~~li~~~~~~~iViGlP~~~~g~~~~-   71 (138)
T 1nu0_A            2 SGTLXAFDFGTKSIGVAVGQRITGTAR--PLPAIKAQDGTPD-------WNIIERLLKEWQPDEIIVGLPLNXDGTEQP-   71 (138)
T ss_dssp             CCEEEEEECCSSEEEEEEEETTTTEEE--EEEEEEEETTEEC-------HHHHHHHHHHHCCSEEEEEEEECTTSCBCH-
T ss_pred             CCCEEEEEECCCEEEEEEECCCCCCCC--CEEEEECCCCCHH-------HHHHHHHHHHCCCCEEEECCCCCCCCCCCH-
T ss_conf             976899991799799999479987401--4078981677268-------999999864248738996443477787578-


Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             89999999999998601617752
Q gi|254780554|r   84 KLGQARAIAILSPALARIPVSEY  106 (169)
Q Consensus        84 ~lg~arGvi~l~~~~~~i~v~ey  106 (169)
                      .-..++--+-......++||+.+
T Consensus        72 ~a~~v~~f~~~L~~~~~l~v~~v   94 (138)
T 1nu0_A           72 LTARARKFANRIHGRFGVEVKLH   94 (138)
T ss_dssp             HHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             99999999999998629996997


No 5  
>>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} (A:326-467)
Probab=98.15  E-value=1.2e-05  Score=55.39  Aligned_cols=126  Identities=16%  Similarity=0.106  Sum_probs=74.5

Q ss_pred             CCEEEEECCCCC-EEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHH
Q ss_conf             806999978887-2058999971996899983368738899988899999998999862279627788503320241247
Q gi|254780554|r    4 SIRIIGIDPGLR-RTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVAT   82 (169)
Q Consensus         4 ~MrILGIDPGl~-~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~   82 (169)
                      +.||||||||+. ++|+|+.|..|.   +++...+.......   +-....+.|.+++.+|+|+.|+|-.--      ..
T Consensus         3 ~~rilaiD~G~k~riG~A~~d~~g~---i~~~~~~~~~~~~~---~~~~~~~~l~~li~~~~~~~iViG~g~------~~   70 (142)
T 3bzc_A            3 PRATLGLDPGLRTGVKVAVVDATGK---LLDTATVYPHAPKN---QWDQTLAVLAALCAKHQVELIAIGNGT------AS   70 (142)
T ss_dssp             SCCEEEEECCSSSCEEEEEECTTSC---EEEEEEECCSGGGC---CHHHHHHHHHHHHHHHTCCEEEEESST------TH
T ss_pred             CCEEEEECCCCCCCEEEEEECCCCC---EEEEEEECCCCCHH---HHHHHHHHHHHHHHHCCCCEEEECCCC------HH
T ss_conf             9716776799866259999989998---78867875689544---499999999999998199289988981------35


Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             889999999999998601617752606777653168888999999999996288999995567899999997
Q gi|254780554|r   83 LKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCH  154 (169)
Q Consensus        83 ~~lg~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~~~~~D~aDAlAiAl~h  154 (169)
                      -.+-+++.-......+.++||+.+--.--..          ++-......   .....+.|.-||++++..-
T Consensus        71 ~~~~~~~~~~~~l~~~~~i~V~~vDE~~st~----------~a~~~~~~~---~~~~~~~d~~~Av~i~~~l  129 (142)
T 3bzc_A           71 RETDKLAGELIKKYPGMKLTKIMVSEAGASV----------YSASELAAK---EFPELDVSLRGAVSIARRL  129 (142)
T ss_dssp             HHHHHHHHHHHHHCGGGCCEEEEECCHHHHH----------HHHSHHHHH---HCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCHHHHH----------HHCCHHHHH---HCCCCCHHHHHHHHHHHHC
T ss_conf             8999999999986767886289933324788----------761889885---5757883077888888860


No 6  
>>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} (A:)
Probab=98.02  E-value=7.4e-06  Score=56.66  Aligned_cols=91  Identities=14%  Similarity=0.093  Sum_probs=58.6

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHH
Q ss_conf             06999978887205899997199689998336873889998889999999899986227962778850332024124788
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLK   84 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~   84 (169)
                      |||||||||+.++|.|+-|..+.-..  -.+++....       .....+.|.+++++|+|+.++|=-|+-..+..+...
T Consensus         1 MrilgiD~G~kriGvAi~d~~~~~a~--pl~~i~~~~-------~~~~~~~l~~li~~~~v~~iVvGlP~~~~g~~~~~~   71 (98)
T 1iv0_A            1 MRVGALDVGEARIGLAVGEEGVPLAS--GRGYLVRKT-------LEEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQA   71 (98)
T ss_dssp             CCEEEEEESSSEEEEEEECSCCSSCC--CEEEEECCC-------HHHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCS
T ss_pred             CCEEEEEECCCEEEEEEECCCCCEEE--CEEEEECCC-------CHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHH
T ss_conf             92999980899899999259998781--678898678-------658999999999873625078168977899918899


Q ss_pred             HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9999999999998601617752
Q gi|254780554|r   85 LGQARAIAILSPALARIPVSEY  106 (169)
Q Consensus        85 lg~arGvi~l~~~~~~i~v~ey  106 (169)
                      . .++- -...+.+.++||+.+
T Consensus        72 ~-~i~~-f~~~l~~~~i~v~~~   91 (98)
T 1iv0_A           72 G-KVLP-LVEALRARGVEVELW   91 (98)
T ss_dssp             S-TTHH-HHHHHHHTTCEEEEE
T ss_pred             H-HHHH-HHHHHHHCCCCEEEE
T ss_conf             9-9999-999986479989998


No 7  
>>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} (A:1-74,A:255-284,A:436-494)
Probab=97.04  E-value=0.0015  Score=42.51  Aligned_cols=135  Identities=12%  Similarity=-0.012  Sum_probs=94.1

Q ss_pred             CCE--EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCC--CHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCH
Q ss_conf             806--9999788872058999971996899983368738899--988899999998999862279627788503320241
Q gi|254780554|r    4 SIR--IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDA   79 (169)
Q Consensus         4 ~Mr--ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~--~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~   79 (169)
                      +|+  +||||-|++++=.+++|.++++  ++......++...  +..+=+..+.+.+.++++.++...+++=..-     
T Consensus         2 sm~~~~lgID~Gtt~~k~~l~d~~~g~--ii~~~~~p~~g~~e~d~~~~~~~~~~~~~~~~~~~~I~aIgis~~~-----   74 (163)
T 3i8b_A            2 SLRTLVAGVDTSTQSCKVRVTDAETGE--LVRFGQAKHPNGTSVDPSYWWSAFQEAAEQAGGLDDVSALAVGGQQ-----   74 (163)
T ss_dssp             CCSCEEEEEEECSSEEEEEEEETTTCC--EEEEEEEECCSSSEECTHHHHHHHHHHHHHTTCSTTEEEEEEEECS-----
T ss_pred             CCCCEEEEEECCCCCEEEEEEECCCCE--EEEEEEECCCCCCEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-----
T ss_conf             877579999725503488999899996--9999960088981089999999999999972771044699994687-----


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHH
Q ss_conf             24788999999999999860161775260677765316888899999999999628899-9995567899999997641
Q gi|254780554|r   80 VATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH  157 (169)
Q Consensus        80 ~t~~~lg~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~-~~~~D~aDAlAiAl~h~~~  157 (169)
                      .++            ...+..+...+..-..+++.+..-|.+.=+.+.+++..+|+.+. .++.|++=|++-|++-+.-
T Consensus        75 gv~------------~~~~~~l~~~~~~g~~i~~i~~~GGgsrs~~~~qi~adv~g~~v~~~~~~E~~a~GAAi~Aa~~  141 (163)
T 3i8b_A           75 PAI------------AGKNVEGGCLLAPGGGDNAXASLGLGXKSEAIRTLAPSILGXDVTRPATDEYVAIGAARQAAWV  141 (163)
T ss_dssp             TTT------------TTTTSTTCCEECCCEEHHHHHHHHTTCGCHHHHHHHHHHHTSCEEEECCCCHHHHHHHHHHHHH
T ss_pred             HHH------------HHCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf             999------------7538887764246556556654034550889999999987994696788858999999999998


No 8  
>>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* (A:1-125,A:287-326)
Probab=97.00  E-value=0.026  Score=34.74  Aligned_cols=101  Identities=14%  Similarity=0.118  Sum_probs=59.3

Q ss_pred             CCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCC------CCH-HHHHHHHHHHHHHHHHCCC---CCEEEEE
Q ss_conf             98806999978887205899997199689998336873889------998-8899999998999862279---6277885
Q gi|254780554|r    2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR------QSL-AFRLCQLYEGLTDVIKNWR---PEEAAVE   71 (169)
Q Consensus         2 ~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~------~~~-~~Rl~~I~~~l~~ii~~~~---Pd~vaiE   71 (169)
                      .+.|+|||||-+...|+.|+++.++.-   +..-.+...+.      ... ..-...|...+++++++.+   +|.+++=
T Consensus         3 m~~M~iLaIdTS~~~~sval~~~~~~i---~~~~~~~~~~~~~g~~~~~a~~~H~e~L~~~i~~~L~~~~i~~id~Iavs   79 (165)
T 3en9_A            3 MDPMICLGLEGTAEKTGVGIVTSDGEV---LFNKTIMYKPPKQGINPREAADHHAETFPKLIKEAFEVVDKNEIDLIAFS   79 (165)
T ss_dssp             CCSCEEEEEECSSSEEEEEEEETTSCE---EEEEEEECCCCCSSSSCCCHHHHHHHHHHHHHHHHHHHSCGGGCCEEEEE
T ss_pred             CCCCEEEEEECCCHHHEEEEEECCCCE---EEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             887569999865131367999799929---98866876579899991899999999999999999975895358889996


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHH
Q ss_conf             033202412478899999999999986016177526067
Q gi|254780554|r   72 QVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNT  110 (169)
Q Consensus        72 ~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~~  110 (169)
                      .   +-..-|.+.+|-+-  +.-.+.-.++|++.++..+
T Consensus        80 ~---GPGsfTgLRVG~~~--AkgLa~al~iPlv~vs~le  113 (165)
T 3en9_A           80 Q---GPGLGPSLRVTATV--ARTLSLTLKKPIIGVNHCI  113 (165)
T ss_dssp             E---ESSCHHHHHHHHHH--HHHHHHHHTCCEEEEEHHH
T ss_pred             C---CCCCHHHHHHHHHH--HHHHHHHCCCCCCCCCHHH
T ss_conf             7---98618879999999--9999985599836642466


No 9  
>>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermotoga maritima MSB8} (A:1-104,A:174-218)
Probab=96.39  E-value=0.016  Score=36.15  Aligned_cols=96  Identities=17%  Similarity=0.206  Sum_probs=53.7

Q ss_pred             CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCC--
Q ss_conf             998806999978887205899997199689998336873889998889999999899986227962778850332024--
Q gi|254780554|r    1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKD--   78 (169)
Q Consensus         1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n--   78 (169)
                      |.++++||+||-+ +.|+.|+++  +++...     ........+.+.|..+   +.+++++.+-..--+..+.++..  
T Consensus         9 ~~~~~~ILaIDTS-~~~sVAi~~--~~~il~-----~~~~~~r~hse~L~p~---Ie~lL~~a~l~~~dId~Iavs~GPG   77 (149)
T 2a6a_A            9 HHHHXNVLALDTS-QRIRIGLRK--GEDLFE-----ISYTGEKKHAEILPVV---VKKLLDELDLKVKDLDVVGVGIGPG   77 (149)
T ss_dssp             ----CEEEEEECS-SSEEEEEEE--TTEEEE-----EEEESCGGGGGHHHHH---HHHHHHHHTCCGGGCSEEEEECCSS
T ss_pred             CCCCCEEEEEECC-CCCEEEEEE--CCEEEE-----EEECCCHHHHHHHHHH---HHHHHHHCCCCHHHHHEEEEECCCC
T ss_conf             5653603207616-437799998--999999-----9702767999999999---9999998499979800036615887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEECHH
Q ss_conf             1247889999999999998601617752606
Q gi|254780554|r   79 AVATLKLGQARAIAILSPALARIPVSEYAPN  109 (169)
Q Consensus        79 ~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~  109 (169)
                      .-|.+.+|-+  ++.-.+...++|++.++|+
T Consensus        78 SFTGLRIGls--~AKgLa~~~~iPligVs~~  106 (149)
T 2a6a_A           78 GLTGLRVGIA--TVVGLVSPYDIPVAPLNIS  106 (149)
T ss_dssp             CHHHHHHHHH--HHHHHHGGGTCCEEEECCC
T ss_pred             CCHHHHHHHH--HHHHHHHHCCCCCCCCCCC
T ss_conf             5210678999--9988986368860146749


No 10 
>>3c6a_A Terminase large subunit; terminase nuclease, viral protein; 1.16A {Enterobacteria phage RB49} PDB: 3c6h_A (A:)
Probab=96.34  E-value=0.071  Score=32.10  Aligned_cols=65  Identities=9%  Similarity=-0.057  Sum_probs=46.5

Q ss_pred             CEEEEECCC----CCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHC
Q ss_conf             069999788----872058999971996899983368738899988899999998999862279627788503320
Q gi|254780554|r    5 IRIIGIDPG----LRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN   76 (169)
Q Consensus         5 MrILGIDPG----l~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~   76 (169)
                      -.++|+||+    ...+.+.|+...++...++.....+.-+-..       ..+.+.++.+.|+|..++||.-.++
T Consensus        60 ~~~~~~D~A~g~~~D~ta~~v~~~~~~~~~~v~~~~~~~~~~~~-------~~~~i~~l~~~~~~~~i~vE~~~~g  128 (232)
T 3c6a_A           60 KYVATLDCSEGRGQDYHALQIIDITEFPYKQVAVYHSNTTSHFI-------LPDIVFKYLMMYNECPVYIELNSTG  128 (232)
T ss_dssp             CEEEEEECCCSSSSCCEEEEEEECSSSSEEEEEEEEESCCCTTT-------HHHHHHHHHHHTTSCCEEEBCSHHH
T ss_pred             EEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCHHH-------HHHHHHHHHHHCCCCEEEEEECCCH
T ss_conf             49999974787688878899999248870489998145768889-------9999999998715662999967858


No 11 
>>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} (A:1-126,A:288-334)
Probab=96.14  E-value=0.036  Score=33.91  Aligned_cols=102  Identities=8%  Similarity=0.006  Sum_probs=55.6

Q ss_pred             CCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEEC-CCCCCHH---HH--HHHHHHHHHHHHHCCC-----CCEEEE
Q ss_conf             98806999978887205899997199689998336873-8899988---89--9999998999862279-----627788
Q gi|254780554|r    2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-CVRQSLA---FR--LCQLYEGLTDVIKNWR-----PEEAAV   70 (169)
Q Consensus         2 ~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t-~~~~~~~---~R--l~~I~~~l~~ii~~~~-----Pd~vai   70 (169)
                      .+.|+|||||-+...|+.|+++...-  . .....-.. +.+...+   .|  ...+...+++++++..     .|.|++
T Consensus         3 m~~M~ILgIeTS~~~~svAl~~dg~i--l-~~~~~e~~~~~~g~~~~~a~~~H~~~l~~~i~~~L~~agi~~~diD~Vav   79 (173)
T 3eno_A            3 MDPMIVLGLEGTAHTISCGIIDESRI--L-AMESSMYRPKTGGIRPLDAAVHHSEVIDTVISRALEKAKISIHDIDLIGF   79 (173)
T ss_dssp             CCCCEEEEEECSSSEEEEEEEESSCC--C-EEEEEECCCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEEECCEE--E-EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf             76857999975643118999989989--8-99999722787986758999999999999999999975986412005774


Q ss_pred             EHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHH
Q ss_conf             50332024124788999999999999860161775260677
Q gi|254780554|r   71 EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI  111 (169)
Q Consensus        71 E~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~~v  111 (169)
                           ...|-+...+--.-....-.+...++|++.+...+.
T Consensus        80 -----s~GPG~~t~Lrvg~~~ak~la~~~~~Plv~V~hl~a  115 (173)
T 3eno_A           80 -----SMGPGLAPSLRVTATAARTISVLTGKPIIGVNHPLG  115 (173)
T ss_dssp             -----ECSSSCHHHHHHHHHHHHHHHHHHTCCCEEECHHHH
T ss_pred             -----ECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf             -----033565545046778988887522534203234999


No 12 
>>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* (A:1-118,A:283-330)
Probab=96.02  E-value=0.067  Score=32.27  Aligned_cols=100  Identities=11%  Similarity=0.059  Sum_probs=52.3

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEEC---CCCCCHHH---H--HHHHHHHHHHHHHCCCCCEEEEEHHHHC
Q ss_conf             06999978887205899997199689998336873---88999888---9--9999998999862279627788503320
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS---CVRQSLAF---R--LCQLYEGLTDVIKNWRPEEAAVEQVFVN   76 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t---~~~~~~~~---R--l~~I~~~l~~ii~~~~Pd~vaiE~~F~~   76 (169)
                      |+|||||-+...++.|+++...  .  +. ....+   +.+-..+.   |  -..|...+++++++.+.+.--+.-+.+.
T Consensus         1 M~ILgIeTS~~~~svalv~dg~--i--l~-~~~~~~~~~~~g~~~~~~~~~Hs~~l~~~i~~~L~~agi~~~did~Iavt   75 (166)
T 2ivn_A            1 MLALGIEGTAHTLGIGIVSEDK--V--LA-NVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIAFS   75 (166)
T ss_dssp             CCEEEEECSSSEEEEEEECSSC--E--EE-EEEEECCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEEE
T ss_pred             CEEEEEECCCCCEEEEEEECCE--E--EE-EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf             9199998566130899998999--9--99-98886444779838179999999999999999999739984314225675


Q ss_pred             CCHH--HHHHHHHHHHHHHHHHHHCCCCEEEECHHHH
Q ss_conf             2412--4788999999999999860161775260677
Q gi|254780554|r   77 KDAV--ATLKLGQARAIAILSPALARIPVSEYAPNTI  111 (169)
Q Consensus        77 ~n~~--t~~~lg~arGvi~l~~~~~~i~v~ey~P~~v  111 (169)
                      ..|-  +.+.+|.  ....-.+...++|++.+...+.
T Consensus        76 ~GPGs~tgLRvg~--~~Ak~La~~~~iPlv~V~hl~a  110 (166)
T 2ivn_A           76 QGPGLGPALRVVA--TAARALAVKYRKPIVGVNHCIA  110 (166)
T ss_dssp             EESSCHHHHHHHH--HHHHHHHHHTTCCEEEEEHHHH
T ss_pred             ECCCCCHHHHHHH--HHHHHHHHHCCCCCCCCCHHHH
T ss_conf             0576431279999--9999988642655202026999


No 13 
>>2gel_A Putative GRAM negative resuscitation promoting factor; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium LT2} PDB: 2gem_A 1okj_A (A:1-93,A:190-231)
Probab=95.90  E-value=0.078  Score=31.84  Aligned_cols=93  Identities=11%  Similarity=0.189  Sum_probs=52.1

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCC--HHHH
Q ss_conf             06999978887205899997199689998336873889998889999999899986227962778850332024--1247
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKD--AVAT   82 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n--~~t~   82 (169)
                      |+||+||-+...+..|+++  +++.  +..  .+ .....+.+.   |...+++++++.+...--+..+.++..  .-|.
T Consensus         1 M~iLaIDTS~~~~~vAl~~--d~~i--l~~--~~-~~~~~hse~---L~~~I~~lL~~a~i~~~dId~Iavs~GPGSFTG   70 (135)
T 2gel_A            1 MRILAIDTATEACSVALWN--NGTI--NAH--FE-LCPREHTQR---ILPMVQEILAASGASLNEIDALAFGRGPGSFTG   70 (135)
T ss_dssp             CEEEEEECSSSEEEEEEEE--TTEE--EEE--EE-ECCSCCHHH---HHHHHHHHHHHTTCCGGGCSEEEEECCSSCHHH
T ss_pred             CCEEEEECCCCCEEEEEEE--CCEE--EEE--EE-ECCHHHHHH---HHHHHHHHHHHHCCCCHHHHHHEEECCCCCCHH
T ss_conf             9899999277271999999--9999--999--99-654899999---999999998550022123044300035664233


Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECHH
Q ss_conf             889999999999998601617752606
Q gi|254780554|r   83 LKLGQARAIAILSPALARIPVSEYAPN  109 (169)
Q Consensus        83 ~~lg~arGvi~l~~~~~~i~v~ey~P~  109 (169)
                      +.+|-+  ++.-.+.-.++|++.++..
T Consensus        71 lRVgla--~AkgLa~~~~iPligvs~~   95 (135)
T 2gel_A           71 VRIGIG--IAQGLALGANLPMIGVSAA   95 (135)
T ss_dssp             HHHHHH--HHHHHHHTTTCCEEEECCH
T ss_pred             HHHHHH--HHHHHHHHCCCCCCCCCCH
T ss_conf             778899--9999998638987640599


No 14 
>>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} (A:1-172,A:333-381)
Probab=94.25  E-value=0.13  Score=30.38  Aligned_cols=105  Identities=17%  Similarity=0.100  Sum_probs=54.6

Q ss_pred             CCEEEEECCCCCEEEEEEEEEECCEE-EEEEEEEEECCC----CCCHHHHHHHHHHHHHHH-HHCCCCCEEEEEH-----
Q ss_conf             80699997888720589999719968-999833687388----999888999999989998-6227962778850-----
Q gi|254780554|r    4 SIRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCV----RQSLAFRLCQLYEGLTDV-IKNWRPEEAAVEQ-----   72 (169)
Q Consensus         4 ~MrILGIDPGl~~tG~avie~~~~~~-~li~~g~I~t~~----~~~~~~Rl~~I~~~l~~i-i~~~~Pd~vaiE~-----   72 (169)
                      .||||-|.||+++|=.|+.+.+..-+ .-+.+..-+..+    .+.++.|...|.+.|.+- ++-..+|.|+--.     
T Consensus         1 ~~kILvINPGSTSTKIAvfe~e~~v~~~~i~H~~eEL~~f~~i~dQ~~~R~~~I~~~L~e~gi~~~~ldAVVgRGGll~P   80 (221)
T 1saz_A            1 XFRILTINPGSTSTKLSIFEDERXVKXQNFSHSPDELGRFQKILDQLEFREKIARQFVEETGYSLSSFSAFVSRGGLLDP   80 (221)
T ss_dssp             CCEEEEEEECSSEEEEEEEETTEEEEEEEEECCHHHHHTCSSGGGGHHHHHHHHHHHHHTTTCCGGGCSEEEEECCSCSC
T ss_pred             CCEEEEECCCCHHHEEEEEECCCCEEECEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
T ss_conf             97499985781756237893886123442143210104445301058899999999998769983514779980898765


Q ss_pred             ---------------HHHCCCHHHHHHHHHHHHHHHHH-HHHCCCCEEEECHHHH
Q ss_conf             ---------------33202412478899999999999-9860161775260677
Q gi|254780554|r   73 ---------------VFVNKDAVATLKLGQARAIAILS-PALARIPVSEYAPNTI  111 (169)
Q Consensus        73 ---------------~F~~~n~~t~~~lg~arGvi~l~-~~~~~i~v~ey~P~~v  111 (169)
                                     +.-+++...+-.||   |++-.. +...|+|.|-+-|-.|
T Consensus        81 i~gGtY~Vne~Ml~dL~~~~~g~HaSNLG---a~iA~~lA~~~gipAfIvDPv~V  132 (221)
T 1saz_A           81 IPGGVYLVDGLXIKTLKSGKNGEHASNLG---AIIAHRFSSETGVPAYVVDPVVV  132 (221)
T ss_dssp             BCSSEEECCHHHHHHHHHTTTCCCTTHHH---HHHHHHHHHHHCCCEEEESCTTB
T ss_pred             CCCCEEEECHHHHHHHHHCCCCCCCCCHH---HHHHHHHHCCCCCCEEEECCCCC
T ss_conf             06971876799999987467877701489---99999985789997588688131


No 15 
>>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} (A:1-173,A:394-415)
Probab=93.73  E-value=0.27  Score=28.50  Aligned_cols=70  Identities=11%  Similarity=-0.058  Sum_probs=42.5

Q ss_pred             CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCC--------------CCCHHHHHHHHHHHHHHHHHCCCC-
Q ss_conf             99880699997888720589999719968999833687388--------------999888999999989998622796-
Q gi|254780554|r    1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV--------------RQSLAFRLCQLYEGLTDVIKNWRP-   65 (169)
Q Consensus         1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~--------------~~~~~~Rl~~I~~~l~~ii~~~~P-   65 (169)
                      |...|+||-|-||++++-|++++.++.  +.+..|.++-..              ....+.|-..+..-++.+.+...+ 
T Consensus        14 ~~~~~~ILvIN~GSSSlK~alf~~~~~--~~l~~g~ie~i~~~~~~~~~~~~~~~~~~~~~~~~ai~~il~~l~~~~~~~   91 (195)
T 2e1z_A           14 SNEFPVVLVINCGSSSIKFSVLDVATC--DVLMAGIADGMNTENAFLSINGDKPINLAHSNYEDALKAIAFELEKRDLTD   91 (195)
T ss_dssp             ---CCEEEEEEECSSEEEEEEEETTTC--CEEEEEEEESTTSSSCEEEETTSCCEECCSCCHHHHHHHHHHHHHTTTCGG
T ss_pred             CCCCCEEEEECCCCHHHEEEEEECCCC--CEEEEECEEECCCCCCEEEEECCEEEECCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             689846999927826264388988998--789870110038988669980780263153389999999999998468612


Q ss_pred             --CEEEEEH
Q ss_conf             --2778850
Q gi|254780554|r   66 --EEAAVEQ   72 (169)
Q Consensus        66 --d~vaiE~   72 (169)
                        +.|+---
T Consensus        92 ~i~aVghRv  100 (195)
T 2e1z_A           92 SVALIGHRI  100 (195)
T ss_dssp             GEEEEEEEE
T ss_pred             CCEEEEECC
T ss_conf             440897168


No 16 
>>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus VF5} (A:1-136,A:299-315)
Probab=93.61  E-value=0.58  Score=26.46  Aligned_cols=99  Identities=16%  Similarity=0.220  Sum_probs=68.6

Q ss_pred             CCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCH----------HHHHHHHHHHHHHHHHCCCCCE-EEE
Q ss_conf             98806999978887205899997199689998336873889998----------8899999998999862279627-788
Q gi|254780554|r    2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSL----------AFRLCQLYEGLTDVIKNWRPEE-AAV   70 (169)
Q Consensus         2 ~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~----------~~Rl~~I~~~l~~ii~~~~Pd~-vai   70 (169)
                      .+.|++=.||-|++.+=..|.|..++.+..++.....+.-....          -+|.......+.+++++|+++. .++
T Consensus         9 ~~~~~~AvIDiGSNsirL~I~e~~~~~~~~i~~~k~~vrLg~~~~~~g~i~~e~i~r~~~al~~f~~~~~~~~v~~i~~v   88 (153)
T 1t6c_A            9 KPIMRVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKAV   88 (153)
T ss_dssp             -CCEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCCCEEEEEEECCCEEEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             88668999997544089999970699741142224787502465325981999999999999999999875054559973


Q ss_pred             EHHHHC--CCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHH
Q ss_conf             503320--241247889999999999998601617752606
Q gi|254780554|r   71 EQVFVN--KDAVATLKLGQARAIAILSPALARIPVSEYAPN  109 (169)
Q Consensus        71 E~~F~~--~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~  109 (169)
                      =.-.+.  +|..-.+.         ..-.+-|+++.-++..
T Consensus        89 ATsA~R~A~N~~e~l~---------~I~~~tGi~i~iIsge  120 (153)
T 1t6c_A           89 ATEAIRRAKNAEEFLE---------RVKREVGLVVEVITPE  120 (153)
T ss_dssp             ECHHHHTSTTHHHHHH---------HHHHHTCCCEEECCHH
T ss_pred             HHHHHHHHHHHHHHHH---------HHHHHHCCCEEEEEHH
T ss_conf             1699997341599999---------9999869952884199


No 17 
>>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, structural genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum atcc 12472} (A:1-121,A:280-305)
Probab=93.17  E-value=0.35  Score=27.79  Aligned_cols=60  Identities=15%  Similarity=0.078  Sum_probs=45.7

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCC-CCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             06999978887205899997199689998336873889-9988899999998999862279627
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR-QSLAFRLCQLYEGLTDVIKNWRPEE   67 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~-~~~~~Rl~~I~~~l~~ii~~~~Pd~   67 (169)
                      --+||||-|.+++=++++|.+++   ++......+... .+..+-+..|.+.+.+++++...+.
T Consensus        11 ~y~LGIDiGgT~ik~~l~D~~G~---ii~~~~~~~~~~~~~~e~~~~~i~~~i~~ll~~~~i~~   71 (147)
T 1zc6_A           11 RYLIGVDGGGTGTRIRLHASDGT---PLAXAEGGASALSQGIAKSWQAVLSTLEAAFQQAGLPA   71 (147)
T ss_dssp             CEEEEEEECSSCEEEEEEETTCC---EEEEEEESCCCGGGCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CEEEEEECCCCEEEEEEECCCCC---EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             78999992822189999989998---99999956998566999999999999999999849996


No 18 
>>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Agrobacterium tumefaciens str} (A:1-121)
Probab=92.99  E-value=0.67  Score=26.08  Aligned_cols=69  Identities=7%  Similarity=0.027  Sum_probs=54.7

Q ss_pred             CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCH----------HHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             998806999978887205899997199689998336873889998----------889999999899986227962778
Q gi|254780554|r    1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSL----------AFRLCQLYEGLTDVIKNWRPEEAA   69 (169)
Q Consensus         1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~----------~~Rl~~I~~~l~~ii~~~~Pd~va   69 (169)
                      |.++|++=.||-|++.+=..|.|..++.++.++.....+.-....          -+|+......+.++++.|.++.+.
T Consensus        11 ~~~~~~~avIDIGSNsirl~I~e~~~~~~~~i~~~k~~vrLg~~~~~~g~l~~e~i~~~~~~l~~f~~~~~~~~v~~i~   89 (121)
T 3hi0_A           11 LTGLAPVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRXHEEGVTRALXALRRFHVLSEQAQAQKLY   89 (121)
T ss_dssp             CTTCCCEEEEEECSSEEEEEEESCSSSSCCEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             CCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             5799948999965430899999737998506888889961656764259919999999999999999999867997799


No 19 
>>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* (A:384-592)
Probab=92.89  E-value=0.75  Score=25.80  Aligned_cols=64  Identities=14%  Similarity=0.007  Sum_probs=44.7

Q ss_pred             EEEEECCCC----CEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHC
Q ss_conf             699997888----72058999971996899983368738899988899999998999862279627788503320
Q gi|254780554|r    6 RIIGIDPGL----RRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN   76 (169)
Q Consensus         6 rILGIDPGl----~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~   76 (169)
                      .++|+||+.    ..|...|++..++...++.....+...-..       +.+.+.+++.+|+|..+.||.-.++
T Consensus        38 ~~~~~D~A~g~~~D~ta~~v~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~i~iE~~~~G  105 (209)
T 3cpe_A           38 YIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISHLI-------LPDIVMRYLVEYNECPVYIELNSTG  105 (209)
T ss_dssp             EEEEEECCSSBTTBCEEEEEEECSSSSEEEEEEEEESSSCTTT-------HHHHHHHHHHHTTSCCEEEEESHHH
T ss_pred             EEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCHHH-------HHHHHHHHHHHCCCCEEEEEECCCH
T ss_conf             5888522555778742699932578760899998558888688-------9999999999728838999989859


No 20 
>>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis V583} (A:1-131,A:308-326)
Probab=92.87  E-value=0.36  Score=27.76  Aligned_cols=59  Identities=19%  Similarity=0.239  Sum_probs=48.7

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             06999978887205899997199689998336873889998889999999899986227962
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE   66 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd   66 (169)
                      ..+||||-|.+.+-++++|..+.   .+....+.+....+..+-+..+.+.+++++.++..+
T Consensus         6 ~~~iGIdig~t~i~~~l~Dl~g~---ii~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~   64 (150)
T 2qm1_A            6 KKIIGIDLGGTTIKFAILTTDGV---VQQKWSIETNILEDGKHIVPSIIESIRHRIDLYNXK   64 (150)
T ss_dssp             CEEEEEEECSSEEEEEEEETTCC---EEEEEEEECCCTTTTTTHHHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEEEECCCEEEEEEECCCCC---EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             86999998723389999939998---999999847988898999999999999999972455


No 21 
>>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} (A:86-211,A:358-380)
Probab=92.85  E-value=0.31  Score=28.18  Aligned_cols=57  Identities=9%  Similarity=0.089  Sum_probs=48.5

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             069999788872058999971996899983368738899988899999998999862279
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR   64 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~   64 (169)
                      ..+||||-|.+++-.+++|..++   ++....+.++...+..+-+..+.+.++++++++.
T Consensus         2 ~y~lGIdiG~t~i~~~l~d~~G~---il~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~   58 (149)
T 2hoe_A            2 AYVLGIEVTRDEIAACLIDASXN---ILAHEAHPLPSQSDREETLNVXYRIIDRAKDXXE   58 (149)
T ss_dssp             CEEEEEEECSSEEEEEEEETTCC---EEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCEEEEEEEECCCC---EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             71257899898899999928998---9987643277778989999999999999999865


No 22 
>>3gbt_A Gluconate kinase; LBA0354, FGGY kinase family, carbohydrate metabolic process, transferase, structural genomics, PSI-2; 2.40A {Lactobacillus acidophilus ncfm} (A:1-237)
Probab=92.75  E-value=0.79  Score=25.65  Aligned_cols=65  Identities=23%  Similarity=0.214  Sum_probs=40.2

Q ss_pred             CCCE-EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCC--------CHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             8806-9999788872058999971996899983368738899--------988899999998999862279627788
Q gi|254780554|r    3 KSIR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--------SLAFRLCQLYEGLTDVIKNWRPEEAAV   70 (169)
Q Consensus         3 ~~Mr-ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~--------~~~~Rl~~I~~~l~~ii~~~~Pd~vai   70 (169)
                      .+|+ +||||-|++++=.+++|.+++..   .......+...        +..+=...+.+.+.++.+....+..+|
T Consensus         1 ~Sm~~~lgID~GTts~ka~l~d~~g~~~---~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~I~~I   74 (237)
T 3gbt_A            1 XSLKYIIGXDVGTTATKGVLYDINGKAV---ASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQKIDGKIAAI   74 (237)
T ss_dssp             -CCEEEEEEEECSSEEEEEEEETTSCEE---EEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTCSSEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEEECCCCEE---EEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             9977899997511031000683889899---9999847831699997147999999999999999996388871599


No 23 
>>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuclease-H fold, sugar kinase, glucose, conformational change; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* (A:1-105,A:275-299)
Probab=92.67  E-value=0.36  Score=27.74  Aligned_cols=67  Identities=18%  Similarity=0.244  Sum_probs=44.9

Q ss_pred             CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC---CCCEEEEEHHHH
Q ss_conf             806999978887205899997199689998336873889998889999999899986227---962778850332
Q gi|254780554|r    4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW---RPEEAAVEQVFV   75 (169)
Q Consensus         4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~---~Pd~vaiE~~F~   75 (169)
                      +|.+||||-|.+++-++++|.+++   .+....+.  .....++-+..+.+.+.+.+++.   .++.+.+--+-+
T Consensus         1 M~~~iGIDiG~T~ira~l~D~~G~---ii~~~~~~--t~~~~e~~~~~i~~~i~~~i~~~~~~~~~~~gI~~~gi   70 (130)
T 2e2o_A            1 MMIIVGVDAGGTKTKAVAYDCEGN---FIGEGSSG--PGNYHNVGLTRAIENIKEAVKIAAKGEADVVGMGVAGL   70 (130)
T ss_dssp             CCCEEEEEECSSCEEEEEECTTSC---EEEEEEES--CCCHHHHCHHHHHHHHHHHHHHHHTSCCSEEEEEETTC
T ss_pred             CCEEEEEEECHHHEEEEEECCCCC---EEEEEEEC--CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf             909999996500279999979998---99999957--89975104999999999999974589875578832456


No 24 
>>3khy_A Propionate kinase; csgid, IDP01739, ATP-binding, nucleotide-binding, transferase, structural genomics; 1.98A {Francisella tularensis subsp} (A:1-158,A:371-384)
Probab=92.24  E-value=0.85  Score=25.46  Aligned_cols=67  Identities=10%  Similarity=0.013  Sum_probs=49.1

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEE-------------------CCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             699997888720589999719968999833687-------------------3889998889999999899986227962
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIV-------------------SCVRQSLAFRLCQLYEGLTDVIKNWRPE   66 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~-------------------t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd   66 (169)
                      |||-|-||++++=|++.|..+.+  .+..|.+.                   ....+++..++..|.+.|.+-....+++
T Consensus         3 kILviN~GSSSlK~alf~~~~~~--~l~~g~ie~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~il~~L~~~~~~~~i~   80 (172)
T 3khy_A            3 EILVLNCGSSSVKFALINPHTSQ--SLVTGLAENIATKNCKVVFKAEHKIVKYLENGSYKDVFEXLKDFLVENKHLEKIV   80 (172)
T ss_dssp             EEEEEEECSSCEEEEEEETTTTE--EEEEEEEESTTSTTCEEEEESSSEEEEECTTCCHHHHHHHHHHHHHHTTCGGGEE
T ss_pred             EEEEEECCHHHHHHEEEECCCCC--EEEEEEEEECCCCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf             39999387674714679789987--7889878651799846999548833553477899999999999986369855147


Q ss_pred             EEEEEHHH
Q ss_conf             77885033
Q gi|254780554|r   67 EAAVEQVF   74 (169)
Q Consensus        67 ~vaiE~~F   74 (169)
                      .|+-.-+.
T Consensus        81 aVghRvVh   88 (172)
T 3khy_A           81 AIGHRVVH   88 (172)
T ss_dssp             EEEEEESC
T ss_pred             EEECCCCC
T ss_conf             88123567


No 25 
>>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} (A:1-122,A:314-332)
Probab=92.24  E-value=0.42  Score=27.35  Aligned_cols=58  Identities=14%  Similarity=0.075  Sum_probs=40.8

Q ss_pred             CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             9988069999788872058999971996899983368738899988899999998999862279627
Q gi|254780554|r    1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE   67 (169)
Q Consensus         1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~   67 (169)
                      |..++.+||||-|-+.+=++++|..++.+  .....+.++..+.+...       +.+++++++.+.
T Consensus        10 ~p~~~~~lgiDIGgT~i~~al~d~~g~~i--~~~~~~~t~~~~~~~~~-------i~~ii~~~~~~i   67 (141)
T 1sz2_A           10 HGSTKYALVGDVGGTNARLALCDIASGEI--SQAKTYSGLDYPSLEAV-------IRVYLEEHKVEV   67 (141)
T ss_dssp             ----CEEEEEEEETTEEEEEEEETTTCCE--EEEEEEEGGGCSCHHHH-------HHHHHHHSCCCC
T ss_pred             CCCCCEEEEEEECCHHHHHEEEECCCCEE--EEEEEECCCCHHHHHHH-------HHHHHHHCCCCC
T ss_conf             78433899999780543254698999989--68888789987689999-------999998669987


No 26 
>>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, ribonuclease H fold, sugar kinase/HSP70/actin superfamily, domain rotation; HET: NAG NDG; 1.9A {Homo sapiens} (A:1-119,A:314-347)
Probab=92.20  E-value=0.33  Score=27.95  Aligned_cols=58  Identities=12%  Similarity=0.045  Sum_probs=42.0

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCC--CCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             699997888720589999719968999833687388--9998889999999899986227962
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV--RQSLAFRLCQLYEGLTDVIKNWRPE   66 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~--~~~~~~Rl~~I~~~l~~ii~~~~Pd   66 (169)
                      -+||||-|.+++=++++|.+++   .+....+.++.  ..+..+=+..|.+.+.+++.+..++
T Consensus         7 ~vLGIDiGgT~ir~~lvD~~G~---ii~~~~~~~~~~~~~~~e~~~~~i~~~i~~~l~~~~~~   66 (153)
T 2ch5_A            7 IYGGVEGGGTRSEVLLVSEDGK---ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVD   66 (153)
T ss_dssp             EEEEEEECTTCEEEEEEETTSC---EEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             EEEEEECCCCCEEEEEECCCCC---EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             8999990611028899959999---99999936889665899999999999999999974999


No 27 
>>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} (A:1-119,A:275-289)
Probab=92.15  E-value=0.43  Score=27.27  Aligned_cols=58  Identities=12%  Similarity=0.231  Sum_probs=41.7

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             06999978887205899997199689998336873889998889999999899986227962778
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA   69 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~va   69 (169)
                      |.++|||-|.+++-+++.|..++   .+....+.++......    .+.+.+.++++++..+..+
T Consensus         1 myvigidig~~~i~~~l~dl~g~---ii~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~i~g   58 (134)
T 2aa4_A            1 MTTLAIDIGGTKLAAALIGADGQ---IRDRRELPTPASQTPE----ALRDALSALVSPLQAHAQR   58 (134)
T ss_dssp             CCEEEEEECSSEEEEEEECTTCC---EEEEEEEECCSSCCHH----HHHHHHHHHHTTTGGGCSE
T ss_pred             CCEEEEEECHHHEEEEEECCCCC---EEEEEEEECCCCCCHH----HHHHHHHHHHHHHHHHCCC
T ss_conf             97999998810489999979997---9999999789888999----9999999999998764374


No 28 
>>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} (A:1-95,A:239-270)
Probab=91.71  E-value=0.02  Score=35.54  Aligned_cols=81  Identities=16%  Similarity=0.060  Sum_probs=48.9

Q ss_pred             CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC-----CCEEEEEHH-----
Q ss_conf             8069999788872058999971996899983368738899988899999998999862279-----627788503-----
Q gi|254780554|r    4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR-----PEEAAVEQV-----   73 (169)
Q Consensus         4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~-----Pd~vaiE~~-----   73 (169)
                      +|-+||||-|++++=.+++|.+|   +++....++|.....      .+.+.+.+++++..     +..|++=.+     
T Consensus         2 ~~y~LGIDiGtTsvKavl~D~dG---~iia~~~~~t~~~~~------~i~~~i~~~L~~~~~~~~~I~gIgvtg~g~~~v   72 (127)
T 1hux_A            2 SIYTLGIDVGSTASKCIILKDGK---EIVAKSLVAVGTGTS------GPARSISEVLENAHMKKEDMAFTLATGYGRNSL   72 (127)
T ss_dssp             CCEEEEEEECSSEEEEEEEETTT---EEEEEEEEECCSSCC------HHHHHHHHHHHHHTCCGGGCSEEEEESTTTTTT
T ss_pred             CEEEEEECCCCCCEEEEEECCCC---EEEEEEEECCCCCCC------HHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHH
T ss_conf             53898531477411379983530---232256622699863------389999999986258863555785135365566


Q ss_pred             HHCCCHHHHHHHHHHHHHHH
Q ss_conf             32024124788999999999
Q gi|254780554|r   74 FVNKDAVATLKLGQARAIAI   93 (169)
Q Consensus        74 F~~~n~~t~~~lg~arGvi~   93 (169)
                      .+.++....+.....||+..
T Consensus        73 ~~d~~g~~~~~w~d~Rga~~   92 (127)
T 1hux_A           73 EGIADKQMSELSCHAMGASF   92 (127)
T ss_dssp             TTTCSEEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHEEECCCCCCEE
T ss_conf             66644322202211044304


No 29 
>>3eo3_A Bifunctional UDP-N-acetylglucosamine 2- epimerase/N-acetylmannosamine kinase; non-protein kinase, sialic acid biosynthesis; 2.84A {Homo sapiens} (A:1-144,A:315-333)
Probab=91.05  E-value=1.1  Score=24.80  Aligned_cols=59  Identities=14%  Similarity=0.133  Sum_probs=41.7

Q ss_pred             CCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9880699997888720589999719968999833687388999888999999989998622796
Q gi|254780554|r    2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP   65 (169)
Q Consensus         2 ~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~P   65 (169)
                      .-++.+||||-|.+++-.+++|..++.   +....+.++  .+.++-...+.+.+.++++++..
T Consensus        17 ~~~~~vlgIdiG~t~i~~~l~D~~G~i---ia~~~~~~~--~~~~~~~~~l~~~i~~~~~~~~~   75 (163)
T 3eo3_A           17 QGTLSALAVDLGGTNLRVAIVSMKGEI---VKKYTQFNP--KTYEERINLILQMCVEAAAEAVK   75 (163)
T ss_dssp             --CCEEEEEEECSSEEEEEEEETTSCE---EEEEEEECC--SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEEECCCEEEEEEECCCCCE---EEEEEECCC--CCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             887028999977111999999499979---999996899--98789999999999999998621


No 30 
>>2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima} (A:1-164,A:386-403)
Probab=90.37  E-value=0.99  Score=25.05  Aligned_cols=68  Identities=13%  Similarity=0.188  Sum_probs=42.6

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEEC--------------------CCCCCHHHHHHHHHHHHHHHHHC--
Q ss_conf             06999978887205899997199689998336873--------------------88999888999999989998622--
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS--------------------CVRQSLAFRLCQLYEGLTDVIKN--   62 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t--------------------~~~~~~~~Rl~~I~~~l~~ii~~--   62 (169)
                      |+||-|.||++++=|++.+.++.+  .+..|.+.-                    ....+..+.+..|.+.|.+---.  
T Consensus         1 MkILviN~GSSSlK~alf~~~~~~--~l~~g~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~il~~L~~~~~~~~   78 (182)
T 2iir_A            1 MRVLVINSGSSSIKYQLIEMEGEK--VLCKGIAERIGIEGSRLVHRVGDEKHVIERELPDHEEALKLILNTLVDEKLGVI   78 (182)
T ss_dssp             CEEEEEEEETTEEEEEEEETTTTE--EEEEEEEECTTSTTCEEEEEETTEEEEEECCCCSHHHHHHHHHHHHHCTTTCSC
T ss_pred             CCEEEECCCHHHHEEEEEECCCCC--EEEEEEEEEECCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             919998677273632889679984--788888988459986389980883035403679999999999999985356744


Q ss_pred             ---CCCCEEEEEHHH
Q ss_conf             ---796277885033
Q gi|254780554|r   63 ---WRPEEAAVEQVF   74 (169)
Q Consensus        63 ---~~Pd~vaiE~~F   74 (169)
                         -+++.|+---++
T Consensus        79 ~~~~~i~avghRvVh   93 (182)
T 2iir_A           79 KDLKEIDAVGHRVVH   93 (182)
T ss_dssp             SCSTTCCEEEEEESC
T ss_pred             CCHHHHEEEEEECCC
T ss_conf             784442057542246


No 31 
>>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} (A:1-76,A:372-405,A:594-607)
Probab=88.13  E-value=1.2  Score=24.60  Aligned_cols=60  Identities=18%  Similarity=0.150  Sum_probs=49.6

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             699997888720589999719968999833687388999888999999989998622796
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP   65 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~P   65 (169)
                      .|.|||-|++++=..+.+.+++.++.+.+|..++.--+..-.-+....+.+++.+++-.-
T Consensus         3 iivgIDIGSSkv~avIaev~dg~i~VLG~G~~~S~GiKG~I~dIe~a~~aI~~AI~~AE~   62 (124)
T 1nbw_A            3 LIAGIDIGNATTEVALASDYPQARAFVASGIVATTGMKGTRDNIAGTLAALEQALAKTPW   62 (124)
T ss_dssp             EEEEEEECSSEEEEEEEECBTTBCCCCEEEEEECCSSTTSGGGHHHHHHHHHHHHTTSSC
T ss_pred             EEEEEECCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             799996077631589999648953796225456677567477899999999999997199


No 32 
>>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, actin) superfamily; 1.90A {Escherichia coli} (A:1-117)
Probab=88.09  E-value=2.1  Score=23.06  Aligned_cols=66  Identities=11%  Similarity=0.090  Sum_probs=51.3

Q ss_pred             CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC------CCCCH----HHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             88069999788872058999971996899983368738------89998----88999999989998622796277
Q gi|254780554|r    3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC------VRQSL----AFRLCQLYEGLTDVIKNWRPEEA   68 (169)
Q Consensus         3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~------~~~~~----~~Rl~~I~~~l~~ii~~~~Pd~v   68 (169)
                      +.+++=.||-|++.+=.-|.|..++.++.++.....+.      ....+    -+|+...-..+.++++.|+++.+
T Consensus         9 ~~~~~avIDiGSNsirL~I~e~~~~~~~~i~~~k~~~~Lg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~i   84 (117)
T 1u6z_A            9 RPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPASV   84 (117)
T ss_dssp             ---CEEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTCCBCHHHHHHHHHHHHHHHHHTTTCCGGGE
T ss_pred             CCCEEEEEEECCCCEEEEEEEECCCCCCCHHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             9887999997554079999983599720200236896243565546992999999999999999999975799889


No 33 
>>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, structural genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* (A:1-85,A:223-246)
Probab=87.72  E-value=2.2  Score=22.92  Aligned_cols=58  Identities=14%  Similarity=0.049  Sum_probs=40.3

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCC--------CCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             6999978887205899997199689998336873889--------998889999999899986227962
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--------QSLAFRLCQLYEGLTDVIKNWRPE   66 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~--------~~~~~Rl~~I~~~l~~ii~~~~Pd   66 (169)
                      -+||||-|++++=.+++|.+++.   +......++..        .+..+=...+.+.+++++.+...+
T Consensus         7 yilgIDiGTTsiKa~l~D~~G~~---ia~~~~~~~~~~~~~g~~Eqdp~~~w~~i~~~i~~ll~~~~i~   72 (109)
T 3g25_A            7 YILSIDQGTTSSRAILFNQKGEI---AGVAQREFKQYFPQSGWVEHDANEIWTSVLAVXTEVINENDVR   72 (109)
T ss_dssp             EEEEEEECSSEEEEEEECTTSCE---EEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             EEEEEECCCCCCHHHEECCCCCE---EEEEEEECCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             78999840204011068499989---9999970671248998078899999999999999999875999


No 34 
>>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} (A:106-216)
Probab=87.50  E-value=1.9  Score=23.33  Aligned_cols=57  Identities=9%  Similarity=0.141  Sum_probs=44.6

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             6999978887205899997199689998336873889998889999999899986227962
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE   66 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd   66 (169)
                      .++|||-|.+.+=.+++|..++   .+....+.++. .+..+-+..+.+.+.++++++..+
T Consensus         4 ~~igidig~~~i~~~l~d~~g~---ii~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~   60 (111)
T 1z05_A            4 QFLSMRLGRGYLTIALHELGGE---VLIDTKIDIHE-IDQDDVLARLLFEIEEFFQTYAAQ   60 (111)
T ss_dssp             EEEEEEEETTEEEEEEEETTSC---EEEEEEEECCC-CBHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             EEEEEEECCCEEEEEEECCCCC---EEEEEEECCCC-CCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999998999899999969997---99999613457-987899999999999999970766


No 35 
>>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleotide-binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O (X:1-84,X:222-244)
Probab=87.23  E-value=2.3  Score=22.74  Aligned_cols=63  Identities=13%  Similarity=0.030  Sum_probs=43.0

Q ss_pred             CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCC--------CCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             998806999978887205899997199689998336873889--------998889999999899986227962
Q gi|254780554|r    1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--------QSLAFRLCQLYEGLTDVIKNWRPE   66 (169)
Q Consensus         1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~--------~~~~~Rl~~I~~~l~~ii~~~~Pd   66 (169)
                      |...--+||||-|++++=.+++|.+++..   .......+..        .+..+=...+.+.+.+++++...+
T Consensus         1 Mm~~~~iLgIDiGTTs~Ka~lvd~~G~iv---a~~~~~~~~~~~~~g~~eqdpe~iw~~i~~~i~~ll~~a~i~   71 (107)
T 3h3n_X            1 MAEKNYVMAIDQGTTSSRAIIFDRNGKKI---GSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIESGIR   71 (107)
T ss_dssp             -CCCCEEEEEEECSSEEEEEEEETTSCEE---EEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCEEEEEECCCCCHHHHEECCCCCEE---EEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99784899998211120231571899999---999983671658998289899999999999999999984998


No 36 
>>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} (A:83-194)
Probab=86.98  E-value=1.3  Score=24.24  Aligned_cols=57  Identities=5%  Similarity=0.035  Sum_probs=42.7

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             6999978887205899997199689998336873889998889999999899986227962
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE   66 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd   66 (169)
                      -+||||-|.+++=.+++|..+.   .+....+.++... ..+-+..+.+.++++++++..+
T Consensus         4 ~~igidig~t~i~~~l~d~~g~---ii~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~~~~   60 (112)
T 1z6r_A            4 HYLSLRISRGEIFLALRDLSSK---LVVEESQELALKD-DLPLLDRIISHIDQFFIRHQKK   60 (112)
T ss_dssp             EEEEEEEETTEEEEEEEETTCC---EEEEEEEECCSSC-SSCHHHHHHHHHHHHHHHTGGG
T ss_pred             EEEEEEECCCEEEEEEECCCCC---EEEEEEEECCCCC-HHHHHHHHHHHHHHHHHHCCCC
T ss_conf             8999998898899999879998---8999998425688-0799999999999999972554


No 37 
>>3djc_A Type III pantothenate kinase; structural genomics, putative transferase, PSI-2, protein structure initiative; 2.40A {Legionella pneumophila subsp} (A:1-123,A:243-266)
Probab=86.65  E-value=0.85  Score=25.45  Aligned_cols=62  Identities=19%  Similarity=0.072  Sum_probs=40.4

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHC
Q ss_conf             69999788872058999971996899983368738899988899999998999862279627788503320
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN   76 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~   76 (169)
                      .+|+||-|-+++=||+++..    .++....+.++....     ..+...+.++++.+..+...++.+.++
T Consensus         3 m~L~IDIGNT~iK~al~~~~----~~~~~~~~~t~~~~~-----~e~~~~l~~l~~~~~~~~~~v~~v~i~   64 (147)
T 3djc_A            3 LILCIDVGNSHIYGGVFDGD----EIKLRFRHTSKVSTS-----DELGIFLKSVLRENNCSPETIRKIAIC   64 (147)
T ss_dssp             CEEEEEECSSEEEEEEEETT----EEEEEEEEECSCCCH-----HHHHHHHHHHHHTTTCCGGGCCEEEEE
T ss_pred             EEEEEEECCCCEEEEEEECC----EEEEEEEECCCCCCH-----HHHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf             79999966761089999999----999999846888887-----899999999999759987886789999


No 38 
>>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A (A:1-231)
Probab=85.52  E-value=0.99  Score=25.05  Aligned_cols=58  Identities=16%  Similarity=0.109  Sum_probs=38.8

Q ss_pred             EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCC--------CHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             9999788872058999971996899983368738899--------988899999998999862279627
Q gi|254780554|r    7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--------SLAFRLCQLYEGLTDVIKNWRPEE   67 (169)
Q Consensus         7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~--------~~~~Rl~~I~~~l~~ii~~~~Pd~   67 (169)
                      +||||-|++++=-+++|.+++-   +.......+...        +..+=...+.+.+.+++..+.|+.
T Consensus         2 ~lgiDiGTts~Ka~l~d~~g~v---v~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~   67 (231)
T 2itm_A            2 YIGIDLGTSGVKVILLNEQGEV---VAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSLQD   67 (231)
T ss_dssp             EEEEEECSSEEEEEEECTTSCE---EEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHSCCTT
T ss_pred             EEEEEECCCCEEEEEEECCCCE---EEEEEEECCEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             8999962225221278088989---99999844514589983898999999999999999997669557


No 39 
>>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} (A:1-141,A:327-343)
Probab=83.84  E-value=3.4  Score=21.73  Aligned_cols=100  Identities=15%  Similarity=0.081  Sum_probs=65.4

Q ss_pred             CCCCEEEEECCCCCEEEEEEEEEECC-EEEEEEEEEEECCCCCCH----------HHHHHHHHHHHHHHHHCCCCCEE-E
Q ss_conf             98806999978887205899997199-689998336873889998----------88999999989998622796277-8
Q gi|254780554|r    2 RKSIRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSL----------AFRLCQLYEGLTDVIKNWRPEEA-A   69 (169)
Q Consensus         2 ~~~MrILGIDPGl~~tG~avie~~~~-~~~li~~g~I~t~~~~~~----------~~Rl~~I~~~l~~ii~~~~Pd~v-a   69 (169)
                      ++.|++=.||-|++..=+.|.|..++ .++.++.....+.-....          -+|.......+.+++++|+++.+ +
T Consensus        13 ~~~~~~avIDIGSNSirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~l~~e~i~r~~~al~~f~~~~~~~~v~~i~~   92 (158)
T 3cer_A           13 KESVTVAGIDCGTNSIRLKIARVDADGXHEVVPRILRVIRLGQDVDKTHRFADEALERAYVAAREFAGVIAEHPIDGLRF   92 (158)
T ss_dssp             -CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEEECCCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHTTSCCSEEEE
T ss_pred             CCCCEEEEEEECCCEEEEEEEEECCCCCEEEEEHEEEEEECCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             56887999982565079999998799970350012788766677021399199999999999999999987556421357


Q ss_pred             EEHHHHC--CCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHH
Q ss_conf             8503320--2412478899999999999986016177526067
Q gi|254780554|r   70 VEQVFVN--KDAVATLKLGQARAIAILSPALARIPVSEYAPNT  110 (169)
Q Consensus        70 iE~~F~~--~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~~  110 (169)
                      +=.-.+.  .|..-.  +.+       .-.+.|+++.-.+..+
T Consensus        93 vATsA~R~A~N~~~~--l~~-------I~~~tGi~i~ILsg~e  126 (158)
T 3cer_A           93 VATSATRDAENREEF--EDE-------IERILGVRPEVIPGTE  126 (158)
T ss_dssp             EECHHHHHCTTHHHH--HHH-------HHHHHSSCCEECCHHH
T ss_pred             HHHHHHHHCCCCHHH--HHH-------HHHHHCCCCEEEEHHH
T ss_conf             888999866354379--999-------9998556706730999


No 40 
>>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} (A:1-241)
Probab=83.16  E-value=2  Score=23.16  Aligned_cols=60  Identities=7%  Similarity=0.042  Sum_probs=37.1

Q ss_pred             CE-EEEECCCCCEEEEEEEEEECCEEEEE--EEEEEECCCC---CCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             06-99997888720589999719968999--8336873889---9988899999998999862279
Q gi|254780554|r    5 IR-IIGIDPGLRRTGWGIVDVAGDNLCFV--SSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNWR   64 (169)
Q Consensus         5 Mr-ILGIDPGl~~tG~avie~~~~~~~li--~~g~I~t~~~---~~~~~Rl~~I~~~l~~ii~~~~   64 (169)
                      |. +||||-|++++=-+++|.+++.....  .+......+.   .+..+=...+.+.+.+++.++.
T Consensus         1 M~~~lgiDiGTts~Ka~l~d~~g~~i~~~~~~~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~   66 (241)
T 2dpn_A            1 MAFLLALDQGTTSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRRAG   66 (241)
T ss_dssp             --CEEEEEECSSEEEEEEECTTSCEEEEEEEECCEECSSTTCCEECHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCEECCCCCCEEECHHHHHHHHHHHHHHHHHHCC
T ss_conf             968999984111311017808898999999746704589982899999999999999999999749


No 41 
>>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} (A:1-120,A:236-249)
Probab=82.73  E-value=3.6  Score=21.60  Aligned_cols=58  Identities=14%  Similarity=0.115  Sum_probs=38.0

Q ss_pred             EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC--CCCEEEEEH
Q ss_conf             999978887205899997199689998336873889998889999999899986227--962778850
Q gi|254780554|r    7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW--RPEEAAVEQ   72 (169)
Q Consensus         7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~--~Pd~vaiE~   72 (169)
                      +|.||-|-+++=||+++...    ++..+.+.|+...+..+    +...+.++....  +|+.+++=.
T Consensus         5 ~L~IDiGNT~iK~a~~~~~~----~~~~~~~~t~~~~~~~e----l~~~l~~~~~~~~~~i~~v~isS   64 (134)
T 3bex_A            5 YLLVDVGNTHSVFSITEDGK----TFRRWRLSTGVFQTEDE----LFSHLHPLLGDAMREIKGIGVAS   64 (134)
T ss_dssp             EEEEEECSSEEEEEEESSSS----SCEEEEEECCTTCCHHH----HHHHHHHHHGGGGGGEEEEEEEE
T ss_pred             EEEEEECCCCEEEEEEECCE----EEEEEEECCCCCCCHHH----HHHHHHHHHHCCHHHCCEEEECC
T ss_conf             99999277712899998999----99999953787678899----99999998501044333353312


No 42 
>>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12} (A:1-131,A:286-310)
Probab=82.56  E-value=1.4  Score=24.11  Aligned_cols=63  Identities=8%  Similarity=0.133  Sum_probs=46.6

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             0699997888720589999719968999833687388999888999999989998622796277885
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVE   71 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE   71 (169)
                      --++|||-|-+.+=++++|..++   ++....+.++... ....+..+.+.++++++++..+...|=
T Consensus         7 ~~~iGVdig~t~i~~~l~dl~G~---il~~~~~~~~~~~-~~~~l~~i~~~i~~~~~~~~~~i~gIg   69 (156)
T 3htv_A            7 NVVAGVDXGATHIRFCLRTAEGE---TLHCEKKRTAEVI-APGLVSGIGEXIDEQLRRFNARCHGLV   69 (156)
T ss_dssp             EEEEEEEECSSEEEEEEEETTSC---EEEEEEEEHHHHH-TTCHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             CEEEEEEECCCEEEEEEECCCCC---EEEEEEECCCCCC-HHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             89999997765699999929998---9999997088878-899999999999999986599831799


No 43 
>>1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} (A:1-164,A:384-408)
Probab=81.67  E-value=3  Score=22.04  Aligned_cols=32  Identities=13%  Similarity=0.395  Sum_probs=25.2

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEE
Q ss_conf             0699997888720589999719968999833687
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIV   38 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~   38 (169)
                      ||||-|-||++++=|+++|..+.+  .+..|.+.
T Consensus         1 MkILvIN~GSSSlKfalfd~~~~~--~l~~g~i~   32 (189)
T 1g99_A            1 MKVLVINAGSSSLKYQLIDMTNES--ALAVGLCE   32 (189)
T ss_dssp             CEEEEEEECSSCEEEEEEETTTTE--EEEEEEEE
T ss_pred             CEEEEECCCHHHHEEEEEECCCCC--EEEEEEEE
T ss_conf             959998688174630789779985--78886776


No 44 
>>3lm2_A Putative kinase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, transferase; HET: MSE; 1.70A {Agrobacterium tumefaciens} (A:1-99)
Probab=80.35  E-value=3.5  Score=21.66  Aligned_cols=58  Identities=14%  Similarity=0.077  Sum_probs=42.9

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHH
Q ss_conf             699997888720589999719968999833687388999888999999989998622796277885033
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVF   74 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F   74 (169)
                      .+||||-|-+++=++++|..++-       .+.++...+.    .++.+.+.+.+++.+++.|+|--+-
T Consensus         7 ~vlgiDiGgt~i~~~v~d~~g~i-------~~~t~~~~~~----~~~~~~i~~~i~~~~~~~Igig~pG   64 (99)
T 3lm2_A            7 TVLAIDIGGSHVKIGLSTDGEER-------KVESGKTXTG----PEXVAAVTAXAKDXTYDVIAXGYPG   64 (99)
T ss_dssp             CEEEEEECSSEEEEEETTTCCEE-------EEECCTTCCH----HHHHHHHHHHTTTCCCSEEEEEESS
T ss_pred             EEEEEEECCCEEEEEEEECCCCE-------EEEECCCCCH----HHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             89999978855999999699879-------9970799997----9999999999974799839999576


No 45 
>>2gup_A ROK family protein; sugar kinase, APC80695, sucrose, structural genomics, PSI, protein structure initiative; HET: SUC; 2.01A {Streptococcus pneumoniae TIGR4} (A:1-114,A:273-292)
Probab=79.80  E-value=1.1  Score=24.68  Aligned_cols=62  Identities=16%  Similarity=0.092  Sum_probs=46.1

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHH
Q ss_conf             06999978887205899997199689998336873889998889999999899986227962778850332
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFV   75 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~   75 (169)
                      -.++|||-|-+++-++++|..+.   .+....+.+      +.....+.+.+.++++++++..+++=-+-.
T Consensus         4 ~~~igidIg~~~i~~~lvd~~g~---il~~~~~~~------~~~~~~i~~~i~~~~~~~~i~gIgia~pG~   65 (134)
T 2gup_A            4 XTIATIDIGGTGIKFASLTPDGK---ILDKTSIST------PENLEDLLAWLDQRLSEQDYSGIAXSVPGA   65 (134)
T ss_dssp             CCEEEEEEETTEEEEEEECTTCC---EEEEEEECC------CSSHHHHHHHHHHHHTTSCCSEEEEEESSE
T ss_pred             CEEEEEEECCHHEEEEEEECCCC---EEEEEEECC------CCCHHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf             89999998700379999908996---999999718------876999999999986544675799854042


No 46 
>>1e4f_T Cell division protein FTSA; bacterial cell division, actin family; 1.9A {Thermotoga maritima} (T:1-86,T:168-189)
Probab=79.43  E-value=4.9  Score=20.76  Aligned_cols=41  Identities=15%  Similarity=0.071  Sum_probs=34.3

Q ss_pred             CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCC
Q ss_conf             99880699997888720589999719968999833687388
Q gi|254780554|r    1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV   41 (169)
Q Consensus         1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~   41 (169)
                      |++.=-+.|||-|++..=.-+.+..+++++++.+|...+..
T Consensus         4 M~k~~iiv~LDIGSskVk~iv~~~~~~~i~Ilg~g~~~s~G   44 (108)
T 1e4f_T            4 LSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRG   44 (108)
T ss_dssp             ---CEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCS
T ss_pred             CCCCCEEEEEECCCCCEEEEEEEEECCEEEEEEEEEECCCC
T ss_conf             88898299999860068999999979999999988876521


No 47 
>>3hz6_A Xylulokinase; xylulose, structural genomic, manolate, transferase, structural genomics, PSI-2, protein structure initiative; HET: ADP XUL; 1.65A {Chromobacterium violaceum} (A:1-241)
Probab=79.41  E-value=2.6  Score=22.41  Aligned_cols=65  Identities=12%  Similarity=-0.023  Sum_probs=38.0

Q ss_pred             CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCC----C----CCHHHHHHHHHHHHHHHHHCCC--CCEEEE
Q ss_conf             880699997888720589999719968999833687388----9----9988899999998999862279--627788
Q gi|254780554|r    3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV----R----QSLAFRLCQLYEGLTDVIKNWR--PEEAAV   70 (169)
Q Consensus         3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~----~----~~~~~Rl~~I~~~l~~ii~~~~--Pd~vai   70 (169)
                      -+|-|||||-|++++=-+++|.+++..   ......++.    .    .+..+=...+.+.++++.+...  ++.++|
T Consensus         3 m~~~vlgiDiGTts~Ka~l~d~~g~vv---~~~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~l~~~~~~~~~i~aI   77 (241)
T 3hz6_A            3 LAFYIATFDIGTTEVKAALADRDGGLH---FQRSIALETYGDGNGPVEQDAGDWYDAVQRIASSWWQSGVDARRVSAI   77 (241)
T ss_dssp             CCCEEEEEEECSSEEEEEEECTTSCEE---EEEEEECCCBSTTSSCCEECHHHHHHHHHHHHHHHHTTTCCGGGEEEE
T ss_pred             CCEEEEEEEECCCCEEHEEEECCCCEE---EEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCHHHEEEE
T ss_conf             442799998500110120682889999---999983572568999756899999999999999999739996564799


No 48 
>>1ig8_A Hexokinase PII, hexokinase B; mixed alpha beta, two domains, cleft, transferase; 2.20A {Saccharomyces cerevisiae} (A:75-211,A:459-486)
Probab=73.44  E-value=6.8  Score=19.89  Aligned_cols=121  Identities=16%  Similarity=0.072  Sum_probs=71.3

Q ss_pred             CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCC---C-CHHHHHHHHHHHHHHHHHCCCCCE------EEEEH
Q ss_conf             8806999978887205899997199689998336873889---9-988899999998999862279627------78850
Q gi|254780554|r    3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---Q-SLAFRLCQLYEGLTDVIKNWRPEE------AAVEQ   72 (169)
Q Consensus         3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~---~-~~~~Rl~~I~~~l~~ii~~~~Pd~------vaiE~   72 (169)
                      +.-+.|+||-|-++.=.++++..++....+.....+.+..   . +..+=...|.+.+.++++++..+.      +.+--
T Consensus         4 E~G~fLAlDlGGTNlRV~lV~L~g~~~~~~~q~~~~ip~~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~lpLGfTF   83 (165)
T 1ig8_A            4 ESGDFLAIDLGGTNLRVVLVKLGGDRTFDTTQSKYRLPDAMRTTQNPDELWEFIADSLKAFIDEQFPQGISEPIPLGFTF   83 (165)
T ss_dssp             CEEEEEEEEECSSEEEEEEEEEESSSCEEEEEEEEECCTTGGGCSCTHHHHHHHHHHHHHHHHHHCTTCCCSCEEEEEEC
T ss_pred             CCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE
T ss_conf             56656999417983699998303677736666564063144422781889999999999864531234767500004898


Q ss_pred             HHH--------------CCCHHHHHHHHHHHHHHHH-HHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             332--------------0241247889999999999-998601617752606777653168888999999999
Q gi|254780554|r   73 VFV--------------NKDAVATLKLGQARAIAIL-SPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMML  130 (169)
Q Consensus        73 ~F~--------------~~n~~t~~~lg~arGvi~l-~~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV  130 (169)
                      .|=              .|.....-..|+-.+..+- ++.++++|+.-       .+++.+|...-..|..+.
T Consensus        84 SFP~~Q~si~~g~Li~WtKGF~~~gv~G~Dv~~lL~~Al~r~~l~V~v-------~aivND~~~~~~~~~~~~  149 (165)
T 1ig8_A           84 SFPASQNKINEGILQRWTKGFDIPNIENHDVVPMLQKQITKRNIPIEV-------VALINDGSGAGAAVIAAL  149 (165)
T ss_dssp             CSSEECSBTTCCEECCCCTTCCCTTCTTSBHHHHHHHHHHHTTCCEEE-------EEEECHTTTHHHHHHHHH
T ss_pred             ECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCC-------EEEEECCCHHHHHHHHHH
T ss_conf             413324777876788853255444557854788999999875998663-------488704616889999999


No 49 
>>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} (A:1-185,A:357-384)
Probab=72.82  E-value=7.4  Score=19.66  Aligned_cols=79  Identities=22%  Similarity=0.265  Sum_probs=51.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCC
Q ss_conf             38899988899999998999862279627788503320241247889999999999998601617752606777653168
Q gi|254780554|r   39 SCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV  118 (169)
Q Consensus        39 t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~  118 (169)
                      .....++.+.+..+...+++++.+++||.|.+..-     ..+++..       -+++...+||+..+....    .+++
T Consensus        61 ~~~~~~~~~~~~~~i~~l~~vl~~~kPDlVlV~GD-----~~~~la~-------AlaA~~~~IPVaHieaGl----rs~d  124 (213)
T 1vgv_A           61 XQPGQGLTEITCRILEGLKPILAEFKPDVVLVHGD-----TTTTLAT-------SLAAFYQRIPVGHVEAGL----RTGD  124 (213)
T ss_dssp             CSTTSCHHHHHHHHHHHHHHHHHHHCCSEEEEETT-----CHHHHHH-------HHHHHTTTCCEEEESCCC----CCSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECC-----CCCHHHH-------HHHHHHHCCEEEEEECCC----CCCC
T ss_conf             89999999999999986488897446654032036-----5311348-------999874164389862244----6677


Q ss_pred             CC--CCHHHHHHHHHHH
Q ss_conf             88--8999999999996
Q gi|254780554|r  119 GH--GDKKQIHMMLKML  133 (169)
Q Consensus       119 G~--A~KeqV~~mV~~l  133 (169)
                      -.  .-.|....++.++
T Consensus       125 ~~~g~~ee~~R~~id~l  141 (213)
T 1vgv_A          125 LYSPWPEEANRTLTGHL  141 (213)
T ss_dssp             TTSSTTHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHCCCC
T ss_conf             32146366666531432


No 50 
>>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A (A:1-120,A:276-302)
Probab=71.89  E-value=6.4  Score=20.04  Aligned_cols=59  Identities=8%  Similarity=0.107  Sum_probs=39.7

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf             069999788872058999971996899983368738899988899999998999862279627788503
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQV   73 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~   73 (169)
                      -.+||||-|-+.+-++++|..+.   .+....+.+...       ..+.+.+.++++++..+...+=.+
T Consensus         3 ~~~iGIdIg~t~i~~~l~Dl~G~---ii~~~~~p~~~~-------~~~~~~I~~~i~~~~~~~~~i~gi   61 (147)
T 3epq_A            3 AXLGGIEAGGTXFVCAVGREDGT---IIDRIEFPTXXP-------DETIEXVIQYFSQFSLQAIGIGSF   61 (147)
T ss_dssp             CCEEEEEECSSEEEEEEECTTSC---EEEEEEEECCCH-------HHHHHHHHHHHTTSCCSEEEEEEC
T ss_pred             CEEEEEEECCCEEEEEEECCCCC---EEEEEEECCCCH-------HHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             66999997777799999969995---999999658997-------999999999998714765588101


No 51 
>>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} (A:1-176,A:349-376)
Probab=71.04  E-value=8.1  Score=19.41  Aligned_cols=79  Identities=15%  Similarity=0.108  Sum_probs=50.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCC
Q ss_conf             38899988899999998999862279627788503320241247889999999999998601617752606777653168
Q gi|254780554|r   39 SCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV  118 (169)
Q Consensus        39 t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~  118 (169)
                      .....++.+.+..+...+.+++++++||.|.+-.-     ..+++.       .-+++...+||+..+-...    .|++
T Consensus        66 ~~~~~sl~~~~~~~i~~~~~~l~~~~PD~VlV~GD-----t~~~lA-------~AlaA~~~~IPvaHieaGl----rS~d  129 (204)
T 1v4v_A           66 XQERQALPDLAARILPQAARALKEXGADYVLVHGD-----TLTTFA-------VAWAAFLEGIPVGHVEAGL----RSGN  129 (204)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHHHHHTTCSEEEEESS-----CHHHHH-------HHHHHHHTTCCEEEETCCC----CCSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCC-----CCCCHH-------HHHHHHHHHHHHHEECCCC----CCCC
T ss_conf             89888899999999998776654047652310136-----643113-------6788987634451110355----6666


Q ss_pred             C--CCCHHHHHHHHHHH
Q ss_conf             8--88999999999996
Q gi|254780554|r  119 G--HGDKKQIHMMLKML  133 (169)
Q Consensus       119 G--~A~KeqV~~mV~~l  133 (169)
                      =  .+..|....++.++
T Consensus       130 ~~~~~pEE~~R~~is~l  146 (204)
T 1v4v_A          130 LKEPFPEEANRRLTDVL  146 (204)
T ss_dssp             TTSSTTHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHCCC
T ss_conf             56773466655441234


No 52 
>>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, infectious diseases, isomerase; 2.35A {Vibrio cholerae} (A:1-196,A:382-396)
Probab=70.14  E-value=8.5  Score=19.29  Aligned_cols=78  Identities=18%  Similarity=0.157  Sum_probs=52.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCC
Q ss_conf             88999888999999989998622796277885033202412478899999999999986016177526067776531688
Q gi|254780554|r   40 CVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG  119 (169)
Q Consensus        40 ~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~G  119 (169)
                      ...+++...+..+...+.+++.+++||.|.+-.-     ..++  ++     ..+++...+||+..+-...    .||+=
T Consensus        87 ~~~~s~~~~~~~~~~~l~~~l~~~~PD~VlV~GD-----~~~~--La-----~AlaA~~~~IPvaHieaGl----rs~d~  150 (211)
T 3dzc_A           87 EPGQTLNGVTSKILLGMQQVLSSEQPDVVLVHGD-----TATT--FA-----ASLAAYYQQIPVGHVEAGL----RTGNI  150 (211)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEETT-----SHHH--HH-----HHHHHHTTTCCEEEETCCC----CCSCT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-----CCCC--HH-----HHHHHHHCCCCEEEEECCC----CCCCC
T ss_conf             8998899999999999999898626764540014-----6542--13-----7777650355326850465----55686


Q ss_pred             --CCCHHHHHHHHHHH
Q ss_conf             --88999999999996
Q gi|254780554|r  120 --HGDKKQIHMMLKML  133 (169)
Q Consensus       120 --~A~KeqV~~mV~~l  133 (169)
                        .+-.|....++.++
T Consensus       151 ~~g~peE~~R~~is~l  166 (211)
T 3dzc_A          151 YSPWPEEGNRKLTAAL  166 (211)
T ss_dssp             TSSTTHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHCCCCC
T ss_conf             5356145542203652


No 53 
>>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein structure initiative; 1.90A {Salmonella typhimurium} (A:1-128,A:313-327)
Probab=68.37  E-value=9.3  Score=19.06  Aligned_cols=65  Identities=12%  Similarity=0.133  Sum_probs=46.4

Q ss_pred             CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC-CCEEEEE
Q ss_conf             88069999788872058999971996899983368738899988899999998999862279-6277885
Q gi|254780554|r    3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR-PEEAAVE   71 (169)
Q Consensus         3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~-Pd~vaiE   71 (169)
                      ....++|||-|-+.+-++++|..++   .++...+.++ .....+-+..|.+.+.+...++. +..++|=
T Consensus        22 ~~~~~igvdig~t~i~~~l~d~~G~---il~~~~~~~~-~~~~~~~~~~i~~~i~~~~~~~~~i~~Igia   87 (143)
T 2ap1_A           22 SNAMYYGFDIGGTKIALGVFDSTRR---LQWEKRVPTP-HTSYSAFLDAVCELVEEADQRFGVKGSVGIG   87 (143)
T ss_dssp             -CCEEEEEEECSSEEEEEEEETTCC---EEEEEEEECC-CSCHHHHHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred             CCCEEEEEEECCCEEEEEEEECCCC---EEEEEEEECC-CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             8985999993646699999909998---9999999799-9999999999999999988863997279999


No 54 
>>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide- binding, phosphoprotein, polymorphism; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3fzh_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 1ngh_A* 1ngd_A* 1ngf_A* 1bup_A* 1nga_A* ... (A:1-208,A:383-404)
Probab=67.31  E-value=3.2  Score=21.93  Aligned_cols=20  Identities=35%  Similarity=0.516  Sum_probs=18.2

Q ss_pred             CCEEEEECCCCCEEEEEEEE
Q ss_conf             80699997888720589999
Q gi|254780554|r    4 SIRIIGIDPGLRRTGWGIVD   23 (169)
Q Consensus         4 ~MrILGIDPGl~~tG~avie   23 (169)
                      .|.++|||=|+++++.|+.+
T Consensus        22 ~~~viGIDfGTTns~VA~~~   41 (230)
T 3i33_A           22 SMPAIGIDLGTTYSCVGVFQ   41 (230)
T ss_dssp             -CCCEEEEECSSEEEEEEEE
T ss_pred             CCCEEEEECCCCCEEEEEEE
T ss_conf             99899999371478999998


No 55 
>>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A (A:1-192,A:357-375)
Probab=64.86  E-value=11  Score=18.63  Aligned_cols=55  Identities=31%  Similarity=0.304  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             8999888999999989998622796277885033202412478899999999999986016177526
Q gi|254780554|r   41 VRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYA  107 (169)
Q Consensus        41 ~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~  107 (169)
                      ...++...+..+...+..++++++||.|.++..++.     .       -...+++.+.++|++-+.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~l~~~kPD~V~v~~~~~~-----~-------l~~~laA~~~~IPvv~~~  126 (211)
T 3beo_A           72 DRQTLIDITTRGLEGLDKVMKEAKPDIVLVHGDTTT-----T-------FIASLAAFYNQIPVGHVE  126 (211)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHCCSEEEEETTSHH-----H-------HHHHHHHHHTTCCEEEES
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC-----C-------HHHHHHHHHCCCEEEEEE
T ss_conf             997799999999998899887447550442014564-----2-------015888873063179985


No 56 
>>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* (A:1-85,A:223-247)
Probab=64.06  E-value=11  Score=18.54  Aligned_cols=64  Identities=16%  Similarity=0.037  Sum_probs=36.5

Q ss_pred             CC-EEEEECCCCCEEEEEEEEEECCEEEEE--EEEEEECCCC---CCHHHHHHHHHHHHHHHHHC----CCCCE
Q ss_conf             80-699997888720589999719968999--8336873889---99888999999989998622----79627
Q gi|254780554|r    4 SI-RIIGIDPGLRRTGWGIVDVAGDNLCFV--SSGTIVSCVR---QSLAFRLCQLYEGLTDVIKN----WRPEE   67 (169)
Q Consensus         4 ~M-rILGIDPGl~~tG~avie~~~~~~~li--~~g~I~t~~~---~~~~~Rl~~I~~~l~~ii~~----~~Pd~   67 (169)
                      +| -+||||-|++++=.+++|.+++.+..-  .+....+...   .+..+=...+.+.++++++.    +.|+.
T Consensus         2 sm~yvLgIDiGTts~Ra~l~D~~G~iia~~~~~~~~~~~~~G~~EqDp~~~w~ai~~~i~~ll~~~~~~i~~~~   75 (110)
T 2w40_A            2 SMNVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVI   75 (110)
T ss_dssp             -CEEEEEEEECSSEEEEEEEETTCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHHHHSSSCE
T ss_pred             CCCEEEEEECCHHCCHHHEECCCCCEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             55599999731111012168399989999997067536999838989999999999999999998760488566


No 57 
>>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* (A:1-266,A:476-506)
Probab=62.55  E-value=12  Score=18.37  Aligned_cols=56  Identities=18%  Similarity=0.238  Sum_probs=34.1

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-----CC---CCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             69999788872058999971996899983368738-----89---9988899999998999862279
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-----VR---QSLAFRLCQLYEGLTDVIKNWR   64 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-----~~---~~~~~Rl~~I~~~l~~ii~~~~   64 (169)
                      -+||||-|++++=.+++|.+++..   ......++     +.   .+..+=...+.+.+.+++....
T Consensus         6 ~vlgIDiGTtsvK~~v~d~~g~~v---~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~i~~~~~~~~   69 (297)
T 3l0q_A            6 YFIGVDVGTGSARAGVFDLQGRXV---GQASREITXFKPKADFVEQSSENIWQAVCNAVRDAVNQAD   69 (297)
T ss_dssp             EEEEEEECSSEEEEEEEETTSCEE---EEEEEECCCEEEETTEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEECCCCEEEEEECCCCCEE---EEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCC
T ss_conf             799998035452555882999899---9999856627689994899999999999999999999749


No 58 
>>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural genomics, transferase, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum atcc 11170} (A:1-242)
Probab=60.12  E-value=13  Score=18.10  Aligned_cols=62  Identities=15%  Similarity=0.088  Sum_probs=37.7

Q ss_pred             CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCC--------CHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9988069999788872058999971996899983368738899--------9888999999989998622796
Q gi|254780554|r    1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--------SLAFRLCQLYEGLTDVIKNWRP   65 (169)
Q Consensus         1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~--------~~~~Rl~~I~~~l~~ii~~~~P   65 (169)
                      |...=-+||||-|++++=.+++|.+++.   +.......+...        +..+-...+.+.+.+++.++..
T Consensus         3 m~~~~~~lgIDiGTts~Ka~l~d~~g~~---i~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~   72 (242)
T 3ifr_A            3 LAQGRQVIGLDIGTTSTIAILVRLPDTV---VAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTTAGE   72 (242)
T ss_dssp             ----CEEEEEEECSSEEEEEEEETTTEE---EEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHCG
T ss_pred             CCCCCEEEEEECCCCCEEEEEEECCCCE---EEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCC
T ss_conf             7789889999772223376799688999---999998567015899808999999999999999999996398


No 59 
>>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} (A:1-187,A:362-389)
Probab=59.06  E-value=4.4  Score=21.06  Aligned_cols=18  Identities=28%  Similarity=0.470  Sum_probs=16.4

Q ss_pred             EEEEECCCCCEEEEEEEE
Q ss_conf             699997888720589999
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVD   23 (169)
Q Consensus         6 rILGIDPGl~~tG~avie   23 (169)
                      .|+|||=|+++++.|+.+
T Consensus         5 ~viGIDfGTT~s~VA~~~   22 (215)
T 1yuw_A            5 PAVGIDLGTTYSCVGVFQ   22 (215)
T ss_dssp             CCEEEEECSSEEEEEEEC
T ss_pred             CEEEEECCCCCEEEEEEE
T ss_conf             999998580108999998


No 60 
>>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, SGC, transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} (A:1-107,A:275-287)
Probab=55.42  E-value=13  Score=18.18  Aligned_cols=54  Identities=15%  Similarity=0.137  Sum_probs=33.9

Q ss_pred             CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf             8806999978887205899997199689998336873889998889999999899986227962778850
Q gi|254780554|r    3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQ   72 (169)
Q Consensus         3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~   72 (169)
                      .+|..+|||-|.+.|=.+++|  +++..+.   .+.|+       ++    +.+.+++++.+...+.+-.
T Consensus        18 ~~m~~lGIDiGsT~tK~V~~e--~~~l~f~---~f~t~-------~i----~~vl~~Lk~~~i~~i~aTG   71 (120)
T 2ews_A           18 GSHMKVGIDAGGTLIKIVQEQ--DNQRTFK---TELTK-------NI----DQVVEWLNQQQIEKLCLTG   71 (120)
T ss_dssp             ---CEEEEEECSSEEEEEEEC--SSCEEEE---EEEGG-------GH----HHHHHHHHTSCCSEEEEES
T ss_pred             CCCEEEEEEECHHHEEEEEEE--CCCCEEE---EEEHH-------HH----HHHHHHHHHHCCCEEEEEC
T ss_conf             997799999871139999993--9998999---86066-------69----9999999862588899970


No 61 
>>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} (X:1-92,X:240-268)
Probab=54.77  E-value=16  Score=17.55  Aligned_cols=89  Identities=9%  Similarity=-0.033  Sum_probs=53.3

Q ss_pred             EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHH
Q ss_conf             99997888720589999719968999833687388999888999999989998622796277885033202412478899
Q gi|254780554|r    7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLG   86 (169)
Q Consensus         7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg   86 (169)
                      +|.||-|-+++=+|+.|  ++  +++..-.+.|+...+..+    +.-.+..+++.++.+.--||....+.=+...    
T Consensus         2 LLaIDIGNTniv~Glfd--g~--~l~~~~Ri~T~~~~T~DE----~~~~l~~ll~~~~i~~~~I~~iiISSVVP~l----   69 (121)
T 2h3g_X            2 IFVLDVGNTNAVLGVFE--EG--ELRQHWRMETDRHKTEDE----YGMLVKQLLEHEGLSFEDVKGIIVSSVVPPI----   69 (121)
T ss_dssp             EEEEEECSSEEEEEEEE--TT--EEEEEEEEECCTTCCHHH----HHHHHHHHHHHTTCCGGGCCEEEEEESCHHH----
T ss_pred             EEEEEECCCCEEEEEEE--CC--EEEEEEEEECCCCCCHHH----HHHHHHHHHHHCCCCCCCCCEEEEECCHHHH----
T ss_conf             89999875500999998--99--999999983587677789----9999999998648875432247863104879----


Q ss_pred             HHHHHHHHHH-HHCCCCEEEECHH
Q ss_conf             9999999999-8601617752606
Q gi|254780554|r   87 QARAIAILSP-ALARIPVSEYAPN  109 (169)
Q Consensus        87 ~arGvi~l~~-~~~~i~v~ey~P~  109 (169)
                        ...+..++ ...+++.+.+.|.
T Consensus        70 --t~~l~~a~k~~f~~~PlvV~pg   91 (121)
T 2h3g_X           70 --MFALERMCEKYFKIKPLVVGPG   91 (121)
T ss_dssp             --HHHHHHHHHHHTCCCCEECSTT
T ss_pred             --HHHHHHHHHHHCCCCEEEECCC
T ss_conf             --9999999998368752996367


No 62 
>>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} (A:1-244)
Probab=54.20  E-value=17  Score=17.49  Aligned_cols=57  Identities=14%  Similarity=0.108  Sum_probs=35.9

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-----CC---CCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             69999788872058999971996899983368738-----89---99888999999989998622796
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-----VR---QSLAFRLCQLYEGLTDVIKNWRP   65 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-----~~---~~~~~Rl~~I~~~l~~ii~~~~P   65 (169)
                      -+||||-|++++=-+++|.+++..   .......+     +.   .+..+=...+.+.++++..++..
T Consensus         3 ~~lgID~GTts~ka~l~d~~g~~i---~~~~~~~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~   67 (244)
T 2d4w_A            3 YVLAIDQGTTSSRAIVFDHSGEIY---STGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTRGNL   67 (244)
T ss_dssp             EEEEEEECSSEEEEEEECTTSCEE---EEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEEECCCCCHHEEECCCCCEE---EEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999997112020120783989899---99997178033899809999999999999999999997599


No 63 
>>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.30A {Porphyromonas gingivalis W83} (A:1-107,A:270-291)
Probab=53.59  E-value=7.5  Score=19.63  Aligned_cols=46  Identities=17%  Similarity=0.196  Sum_probs=25.9

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             6999978887205899997199689998336873889998889999999899
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT   57 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~   57 (169)
                      .||=.|-|+++|-|+++|..+ ...     .++|.--.|+-+-=.+|.+.|.
T Consensus         1 ~ILIADSGSTKTDW~l~~~g~-~i~-----~~~T~GlNP~~qs~eeI~~~l~   46 (129)
T 1zbs_A            1 XILIGDSGSTKTDWCIAKEGK-SLG-----RFQTSGINPFQQDRNEIDTALR   46 (129)
T ss_dssp             CEEEEEECSSEEEEEEEETTE-EEE-----EEEEECCCTTTSCHHHHHHHHT
T ss_pred             CEEEEEECHHHEEEEEECCCC-EEE-----EEECCCCCCCCCCHHHHHHHHH
T ss_conf             989999261046899988997-899-----9976878831179999999999


No 64 
>>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} (A:1-73,A:115-182,A:364-385)
Probab=53.10  E-value=9.6  Score=18.94  Aligned_cols=18  Identities=44%  Similarity=0.682  Sum_probs=16.0

Q ss_pred             EEEEECCCCCEEEEEEEE
Q ss_conf             699997888720589999
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVD   23 (169)
Q Consensus         6 rILGIDPGl~~tG~avie   23 (169)
                      .+||||-|+++|-.++.+
T Consensus         3 ~~iGIDfGTtnt~va~~~   20 (163)
T 2kho_A            3 KIIGIDLGTTNSCVAIMD   20 (163)
T ss_dssp             -CEEEECCSSEEEEEEEE
T ss_pred             CEEEEECCHHHEEEEEEE
T ss_conf             879998470338999998


No 65 
>>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} (D:1-73,D:115-182,D:364-383)
Probab=52.10  E-value=7.9  Score=19.48  Aligned_cols=18  Identities=44%  Similarity=0.682  Sum_probs=15.9

Q ss_pred             EEEEECCCCCEEEEEEEE
Q ss_conf             699997888720589999
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVD   23 (169)
Q Consensus         6 rILGIDPGl~~tG~avie   23 (169)
                      .+||||-|+++|-.++.+
T Consensus         3 ~~lGIDfGTtnt~va~~~   20 (161)
T 1dkg_D            3 KIIGIDLGTTNSCVAIMD   20 (161)
T ss_dssp             CCCEEECCSSEEEEEEEE
T ss_pred             CEEEEECCCCCEEEEEEE
T ss_conf             999999461188999999


No 66 
>>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} (A:1-156,A:333-359)
Probab=50.23  E-value=13  Score=18.25  Aligned_cols=18  Identities=33%  Similarity=0.632  Sum_probs=16.0

Q ss_pred             EEEEECCCCCEEEEEEEE
Q ss_conf             699997888720589999
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVD   23 (169)
Q Consensus         6 rILGIDPGl~~tG~avie   23 (169)
                      .++|||-|++++..|+.+
T Consensus         3 ~~iGIDfGTTnS~va~~~   20 (183)
T 2v7y_A            3 KIIGIDLGTTNSCVAVLE   20 (183)
T ss_dssp             CEEEEEECSSEEEEEEEE
T ss_pred             CEEEEECCHHCEEEEEEE
T ss_conf             779998471228999999


No 67 
>>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} (A:1-122,A:247-267)
Probab=47.41  E-value=21  Score=16.83  Aligned_cols=54  Identities=19%  Similarity=0.174  Sum_probs=32.9

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-CCCCHHHHHHHHHHHH-HHHHHC
Q ss_conf             69999788872058999971996899983368738-8999888999999989-998622
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-VRQSLAFRLCQLYEGL-TDVIKN   62 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-~~~~~~~Rl~~I~~~l-~~ii~~   62 (169)
                      .+||||-|.+++=++++|..|+-.   ....+.++ ......+.+..+...+ .++...
T Consensus        13 y~iGIdIg~t~i~~~l~D~~G~il---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (143)
T 1woq_A           13 PLIGIDIGGTGIKGGIVDLKKGKL---LGERFRVPTPQPATPESVAEAVALVVAELSAR   68 (143)
T ss_dssp             CEEEEEECSSEEEEEEEETTTTEE---EEEEEEEECCSSCCHHHHHHHHHHHHHHHHTS
T ss_pred             CEEEEEECCCEEEEEEEECCCCEE---EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             899999776559999998999989---99999967899999999999999999998651


No 68 
>>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} (A:1-96,A:187-278,A:474-509)
Probab=45.76  E-value=23  Score=16.67  Aligned_cols=62  Identities=15%  Similarity=0.062  Sum_probs=38.5

Q ss_pred             CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEEC---------------C-C---CCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             8806999978887205899997199689998336873---------------8-8---9998889999999899986227
Q gi|254780554|r    3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS---------------C-V---RQSLAFRLCQLYEGLTDVIKNW   63 (169)
Q Consensus         3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t---------------~-~---~~~~~~Rl~~I~~~l~~ii~~~   63 (169)
                      ..=-+||||-|++.+=..++|.+.++.  +.+.....               + +   ..+..+=...+.+.+++++++.
T Consensus         3 ~~~~~lgiD~GTts~ka~l~d~~~G~i--ia~~~~~~~~~~~~~~~~~~~~~p~~g~~Eqdp~~~w~~~~~~i~~~~~~~   80 (224)
T 3jvp_A            3 LTKYTIGVDYGTESGRAVLIDLSNGQE--LADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDYVEVLTTSVPAVMKES   80 (224)
T ss_dssp             --CEEEEEEECSSEEEEEEEETTTCCE--EEEEEEECTTCCBSSBSTTSCCBCCTTCCEECHHHHHHHHTTHHHHHHHC-
T ss_pred             CCCEEEEEECCCCCEEEEEEECCCCEE--EEEEEEEECCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHC
T ss_conf             780799997035452889998899909--999998602443211378888678988167789999999999999999984


Q ss_pred             CCC
Q ss_conf             962
Q gi|254780554|r   64 RPE   66 (169)
Q Consensus        64 ~Pd   66 (169)
                      ..+
T Consensus        81 ~i~   83 (224)
T 3jvp_A           81 GVD   83 (224)
T ss_dssp             --C
T ss_pred             CCC
T ss_conf             989


No 69 
>>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal binding protein; HET: PG4; 1.80A {Thermococcus kodakarensis} (A:)
Probab=45.26  E-value=23  Score=16.63  Aligned_cols=59  Identities=8%  Similarity=0.256  Sum_probs=40.0

Q ss_pred             CCCEEEEECCCCCEEEE-EEE-E--------EECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             88069999788872058-999-9--------71996899983368738899988899999998999862
Q gi|254780554|r    3 KSIRIIGIDPGLRRTGW-GIV-D--------VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK   61 (169)
Q Consensus         3 ~~MrILGIDPGl~~tG~-avi-e--------~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~   61 (169)
                      =++||+.||.+...+-+ ++. +        ..-+.+-+++.|.....-.....++...+++.+.+..+
T Consensus         5 iP~kVv~i~~~~A~vd~~G~~r~v~l~lv~e~~vGD~VLvh~G~Ai~kideeeA~e~l~~l~~l~~~~~   73 (75)
T 2z1c_A            5 VPGKVIEVNGPVAVVDFGGVKREVRLDLMPDTKPGDWVIVHTGFAIEKLDEKKAMEILEAWAEVEKAME   73 (75)
T ss_dssp             CCEEEEEEETTEEEEEETTEEEEEECTTSTTCCTTCEEEEETTEEEEEECHHHHHHHHHHHHHHHHHC-
T ss_pred             CCEEEEEECCCEEEEEECCEEEEEEEEEECCCCCCCEEEEEECHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             446999987998999809949999998608899898999940736554899999999999999999862


No 70 
>>3js6_A Uncharacterized PARM protein; partition, segregation, filament; 1.95A {Staphylococcus aureus} (A:1-180,A:322-355)
Probab=43.73  E-value=17  Score=17.43  Aligned_cols=18  Identities=17%  Similarity=0.126  Sum_probs=15.4

Q ss_pred             CCEEEEECCCCCEEEEEE
Q ss_conf             806999978887205899
Q gi|254780554|r    4 SIRIIGIDPGLRRTGWGI   21 (169)
Q Consensus         4 ~MrILGIDPGl~~tG~av   21 (169)
                      +|.|+|||.|...|-++.
T Consensus         3 nmliigiD~G~~~tK~~~   20 (214)
T 3js6_A            3 NVYVXALDFGNGFVKGKI   20 (214)
T ss_dssp             CEEEEEEEECSSEEEEEE
T ss_pred             CCCEEEEECCHHHEEEEE
T ss_conf             983999993802399999


No 71 
>>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, glycerol metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis KOD1} (O:1-238)
Probab=43.34  E-value=25  Score=16.44  Aligned_cols=55  Identities=15%  Similarity=0.076  Sum_probs=35.4

Q ss_pred             EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-----CC---CCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9999788872058999971996899983368738-----89---9988899999998999862279
Q gi|254780554|r    7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-----VR---QSLAFRLCQLYEGLTDVIKNWR   64 (169)
Q Consensus         7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-----~~---~~~~~Rl~~I~~~l~~ii~~~~   64 (169)
                      +||||-|++++=-+++|.+++..   ......++     +.   .+..+=+..+.+.+.++++...
T Consensus         5 ~lgiD~GTts~ka~l~d~~g~~v---~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~   67 (238)
T 2zf5_O            5 VLSLDEGTTSARAIIFDRESNIH---GIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQSAR   67 (238)
T ss_dssp             EEEEEECSSEEEEEEECTTCCEE---EEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCEEEEEEECCCCEE---EEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCC
T ss_conf             99998103042323795889999---9999977721589982899999999999999999999759


No 72 
>>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GTT GBP; 1.45A {Homo sapiens} (A:1-90)
Probab=40.73  E-value=27  Score=16.19  Aligned_cols=32  Identities=6%  Similarity=0.033  Sum_probs=27.2

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEE
Q ss_conf             06999978887205899997199689998336
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT   36 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~   36 (169)
                      |+|--++++.....|.++...+++.-++|.|.
T Consensus         1 m~I~~l~~~~~~~~~~~~~~~~~~~~lID~g~   32 (90)
T 1qh5_A            1 MKVEVLPALTDNYMYLVIDDETKEAAIVDPVQ   32 (90)
T ss_dssp             CEEEEEEETTTEEEEEEEETTTTEEEEESCSS
T ss_pred             CEEEEEEEECCEEEEEEEECCCCEEEEEECCC
T ss_conf             95789410342689999989999899990898


No 73 
>>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} (A:)
Probab=39.01  E-value=29  Score=16.03  Aligned_cols=57  Identities=11%  Similarity=0.018  Sum_probs=36.2

Q ss_pred             EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-----CC---CCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             69999788872058999971996899983368738-----89---99888999999989998622796
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-----VR---QSLAFRLCQLYEGLTDVIKNWRP   65 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-----~~---~~~~~Rl~~I~~~l~~ii~~~~P   65 (169)
                      -+||||-|++++=..++|.+++...   ......+     ..   .+..+=...+.+.+.+++++...
T Consensus         4 ~~lgiDiGTssvKa~l~d~~g~~v~---~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~l~~~~~~   68 (510)
T 2p3r_A            4 YIVALDQGTTSSRAVVMDHDANIIS---VSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADI   68 (510)
T ss_dssp             EEEEEEECSSEEEEEEECTTCCEEE---EEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEEECCCCCHHHEECCCCCEEE---EEEECCCEECCCCCCEEECHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999982021300116719898999---9996378042899908999999999999999999997599


No 74 
>>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural protein; 1.90A {Thermoplasma acidophilum dsm 1728} (A:1-185,A:320-346)
Probab=32.35  E-value=28  Score=16.06  Aligned_cols=19  Identities=21%  Similarity=0.247  Sum_probs=15.3

Q ss_pred             CCCEEEEECCCCCEEEEEE
Q ss_conf             8806999978887205899
Q gi|254780554|r    3 KSIRIIGIDPGLRRTGWGI   21 (169)
Q Consensus         3 ~~MrILGIDPGl~~tG~av   21 (169)
                      .+|.++|||+|...+-++.
T Consensus        19 ~~~~~igiD~G~~~~K~~~   37 (212)
T 2fsj_A           19 SHMVVVGLDVGYGDTKVIG   37 (212)
T ss_dssp             --CEEEEEEECSSEEEEEC
T ss_pred             CCCEEEEEECCCCCEEEEE
T ss_conf             8888999996868689999


No 75 
>>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} (A:1-142,A:312-344)
Probab=30.73  E-value=30  Score=15.87  Aligned_cols=102  Identities=13%  Similarity=-0.027  Sum_probs=47.9

Q ss_pred             EEEEECCCCCEEEEEEEEEE--CCEEEEEEEE----EEEC-----------------------CCCCCHHHHHHHHHHHH
Q ss_conf             69999788872058999971--9968999833----6873-----------------------88999888999999989
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVA--GDNLCFVSSG----TIVS-----------------------CVRQSLAFRLCQLYEGL   56 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~--~~~~~li~~g----~I~t-----------------------~~~~~~~~Rl~~I~~~l   56 (169)
                      .++|||-|++++-.++.+..  -+.+.++.+.    .+..                       .......+-...+.+.+
T Consensus         4 ~~iGIDlGTTns~Va~~~~~~v~~~PSvVa~~~~~~~~~~vG~~Ak~~~~~~~~~~~~~~~~~~g~~s~~ei~~~~l~~l   83 (175)
T 1jce_A            4 KDIGIDLGTANTLVFLRGKGIVVNEPSVIAIDSTTGEILKVGLEAKNXIGKTPATIKAIRPXRDGVIADYTVALVXLRYF   83 (175)
T ss_dssp             CEEEEEECSSEEEEEETTTEEEEEEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEEECCEETTEESSHHHHHHHHHHH
T ss_pred             CCEEEECCHHHEEEEEECCCEECCCCCEEEEECCCCCEEECHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEHHHHHHHH
T ss_conf             86899877455899996978887898189999899949972699998461890628999774898440000036678778


Q ss_pred             HHHHHCC---CCCEEEEE-HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEC--HHHHHHHHCCCC
Q ss_conf             9986227---96277885-033202412478899999999999986016177526--067776531688
Q gi|254780554|r   57 TDVIKNW---RPEEAAVE-QVFVNKDAVATLKLGQARAIAILSPALARIPVSEYA--PNTIKKAVIGVG  119 (169)
Q Consensus        57 ~~ii~~~---~Pd~vaiE-~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~--P~~vKkavtG~G  119 (169)
                      .+..+++   .+..+++= ...|....+         -++.-++...|+.+...-  |+   -+..++|
T Consensus        84 k~~ae~~~g~~~~~vViTVPa~f~~~qR---------~al~~Aa~~AGl~vv~LI~EPt---AAAlaYG  140 (175)
T 1jce_A           84 INKAKGGXNLFKPRVVIGVPIGITDVER---------RAILDAGLEAGASKVFLIEEPX---AAAIGSN  140 (175)
T ss_dssp             HHHHHTSCCSCCCEEEEEECTTCCHHHH---------HHHHHHHHHTTCSEEEEEEHHH---HHHHHTT
T ss_pred             HHHHHCCCCCCCCCEEEEECCCCCHHHH---------HHHHHHHHHHCCCEEEEECCHH---HHHHHHC
T ss_conf             7764003346778769997698899999---------9999999981887799836789---9975512


No 76 
>>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} (A:)
Probab=29.34  E-value=41  Score=15.05  Aligned_cols=50  Identities=6%  Similarity=-0.051  Sum_probs=31.4

Q ss_pred             ECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHH
Q ss_conf             19968999833687388999888999999989998622796277885033
Q gi|254780554|r   25 AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVF   74 (169)
Q Consensus        25 ~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F   74 (169)
                      ...+++++.+.+...........+...-.+.+.+.|..++||+|++-++.
T Consensus         7 ~~~~lrv~T~Nv~~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIi~LQEv~   56 (301)
T 1zwx_A            7 YPGNFKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAF   56 (301)
T ss_dssp             CCCSCEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSEEEEEEEC
T ss_pred             CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             99987999983886765668981689999999999875699889998587


No 77 
>>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} (A:1-92)
Probab=29.29  E-value=41  Score=15.08  Aligned_cols=32  Identities=9%  Similarity=-0.006  Sum_probs=25.8

Q ss_pred             CEEEEECCCCCEEEEEEEEEECCEEEEEEEEE
Q ss_conf             06999978887205899997199689998336
Q gi|254780554|r    5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT   36 (169)
Q Consensus         5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~   36 (169)
                      |+|--+++|.....|.++...++..-++|.|.
T Consensus         1 m~i~~l~~~~~~~~~~i~~~~~~~~~liD~g~   32 (92)
T 1xm8_A            1 MQIELVPCLKDNYAYILHDEDTGTVGVVDPSE   32 (92)
T ss_dssp             CEEEEEEETTTEEEEEEECTTTCCEEEECCSS
T ss_pred             CEEEEEEEECCEEEEEEEECCCCEEEEECCCC
T ss_conf             96899624534689999989999899989989


No 78 
>>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} (A:1-76,A:369-404,A:592-610)
Probab=29.06  E-value=42  Score=15.02  Aligned_cols=59  Identities=19%  Similarity=0.134  Sum_probs=47.2

Q ss_pred             EEEEECCCCCEEEEEEEEEE-CCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             69999788872058999971-996899983368738899988899999998999862279
Q gi|254780554|r    6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR   64 (169)
Q Consensus         6 rILGIDPGl~~tG~avie~~-~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~   64 (169)
                      .|.|||-|.+.+=..+-+.+ .++..++-++.+.+..-......+..+...+.+.+++-.
T Consensus         3 iIaGIDiGaSat~ViLas~~~a~el~i~~~a~i~s~GikG~~pni~G~~~AI~kALekAG   62 (131)
T 2d0o_A            3 YIAGIDIGNSSTEVALATLDEAGALTITHSALAETTGIKGTLRNVFGIQEALALVARGAG   62 (131)
T ss_dssp             EEEEEEECSSEEEEEEEEECTTCCEEEEEEEEEECCSSTTSTTHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             698985077521278899638982677524646667756748789999999999999829


No 79 
>>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis mr-1} (A:1-145,A:326-370)
Probab=28.94  E-value=42  Score=15.01  Aligned_cols=124  Identities=17%  Similarity=0.171  Sum_probs=75.2

Q ss_pred             CCCEEEEECCCCCEEEE--EEEEEECCEEEEEEEEEEECCC------------CCCHHHHHHHHH--------HHHHHHH
Q ss_conf             88069999788872058--9999719968999833687388------------999888999999--------9899986
Q gi|254780554|r    3 KSIRIIGIDPGLRRTGW--GIVDVAGDNLCFVSSGTIVSCV------------RQSLAFRLCQLY--------EGLTDVI   60 (169)
Q Consensus         3 ~~MrILGIDPGl~~tG~--avie~~~~~~~li~~g~I~t~~------------~~~~~~Rl~~I~--------~~l~~ii   60 (169)
                      -+|+++|+=-|++-=|.  ++++.++..++++.+.+...++            .....+.+..+.        +.+.+++
T Consensus         3 ~~~~~iGlMSGTSlDGID~alv~~~g~~~~~~~~~~~p~p~~lr~~l~~~~~~~~~~~~~~~~l~~~lg~~~a~av~~ll   82 (190)
T 3cqy_A            3 NKAYYIGLXSGTSXDGVDAVLVDFAGEQPQLIGTHTETIPTHLLKGLQRLCLPGTDEINRLGRLDRSVGKLFALAVNNLL   82 (190)
T ss_dssp             TCCEEEEEEECTTCCCEEEEEEECSSSSCEEEEEEEECCCHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCHHHHHHEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88989998655424436258999808936998542431899999999986037865499999999999999999999886


Q ss_pred             HCCC--C---CEEEEEHH-HHCC---CHHHHHHHHHHHHHHHHHHHHCCCCEE-EECHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             2279--6---27788503-3202---412478899999999999986016177-52606777653168888999999999
Q gi|254780554|r   61 KNWR--P---EEAAVEQV-FVNK---DAVATLKLGQARAIAILSPALARIPVS-EYAPNTIKKAVIGVGHGDKKQIHMML  130 (169)
Q Consensus        61 ~~~~--P---d~vaiE~~-F~~~---n~~t~~~lg~arGvi~l~~~~~~i~v~-ey~P~~vKkavtG~G~A~KeqV~~mV  130 (169)
                      ++++  |   |.|+.-.+ .+++   ....++.+|..-    ..+.+-|+||. .|-.+.+..-=-|--.--||.++++.
T Consensus        83 ~~~~l~~~~id~IGsHGQTv~H~P~~~~~~TlQiG~~~----~iA~~tgi~VV~DFR~~DiA~GGQG~~~d~~EA~aFA~  158 (190)
T 3cqy_A           83 AKTKIAKDEIIAIGSHGQTVRHXPNLEVGFTLQIGDPN----TIATETGIDVIADFRRKDIALGGQGVDPKWAEGIAFAW  158 (190)
T ss_dssp             HHHCCCGGGEEEEEEEEEEEEEETTSSSCEEEEESCHH----HHHHHHSSCEEECCHHHHHHTTSCCCCTTTHHHHHHHH
T ss_pred             HHCCCCCCCEEEEECCCCEEEECCCCHHHHHHHHCCCH----HHHHHHCCCEEEECCCCHHHCCCCCCCHHHHHHHHHHH
T ss_conf             42034434435870488557842451134556517718----88987087445530103765398779867999999999


No 80 
>>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} (A:62-196,A:435-451)
Probab=28.69  E-value=42  Score=14.98  Aligned_cols=64  Identities=16%  Similarity=0.049  Sum_probs=45.3

Q ss_pred             CCEEEEECCCCCEEEEEEEEEECC-EEEEEEEEEEECC---CCCCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             806999978887205899997199-6899983368738---899988899999998999862279627
Q gi|254780554|r    4 SIRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSC---VRQSLAFRLCQLYEGLTDVIKNWRPEE   67 (169)
Q Consensus         4 ~MrILGIDPGl~~tG~avie~~~~-~~~li~~g~I~t~---~~~~~~~Rl~~I~~~l~~ii~~~~Pd~   67 (169)
                      .=+.|+||-|-++.=.+.++..++ +...+..-....+   ...+-.+-...|.+.+.++++++.++.
T Consensus         6 ~G~fLAlDlGGTNlRV~~V~L~G~~~~~~~~~~~~~ip~~~~~~t~~~LFd~IA~~i~~fl~~~~~~~   73 (152)
T 1bdg_A            6 TGNFLALDLGGTNYRVLSVTLEGKGKSPRIQERTYCIPAEKMSGSGTELFKYIAETLADFLENNGMKD   73 (152)
T ss_dssp             CEEEEEEEESSSSEEEEEEEECC-CCCCEEEEEEECCCTTTTTSBHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             EEEEEEEEECCCCEEEEEEEECCCCCCEEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             58999998189848999999779997247889875088787169899999999999999998548766


No 81 
>>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} (A:55-200,A:431-457)
Probab=26.24  E-value=47  Score=14.71  Aligned_cols=63  Identities=6%  Similarity=-0.089  Sum_probs=44.9

Q ss_pred             CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCC---CCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             806999978887205899997199689998336873889---998889999999899986227962
Q gi|254780554|r    4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNWRPE   66 (169)
Q Consensus         4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~---~~~~~Rl~~I~~~l~~ii~~~~Pd   66 (169)
                      .=+.|+||-|-++.=.+.++..++....+.....+.+..   .+-.+=...|.+.+.+.++.+.++
T Consensus         6 ~G~fLALDlGGTNlRV~~V~L~G~~~~~~~~~~~~ip~~~~~gt~~eLFd~IA~~i~~fl~~~~~~   71 (173)
T 2yhx_A            6 AGSFLAIVMGGGDLEVILISLAGRQESSIXASRSLAAAMSTTAIPSDLWGNXAXSNAAFSSXEFSS   71 (173)
T ss_dssp             CEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCTTTTSCSCTHHHHHHHHHHHHHHHHHHTSS
T ss_pred             EEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEECCHHHCCCCHHHHHCCHHHHHHHHHHHCCCC
T ss_conf             689999981798579999998389866981356888888645997786475488899998501556


No 82 
>>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A* (A:1-178)
Probab=25.23  E-value=49  Score=14.60  Aligned_cols=21  Identities=24%  Similarity=0.396  Sum_probs=10.1

Q ss_pred             CEEEEEHHHHCCCHHHHHHHHH
Q ss_conf             2778850332024124788999
Q gi|254780554|r   66 EEAAVEQVFVNKDAVATLKLGQ   87 (169)
Q Consensus        66 d~vaiE~~F~~~n~~t~~~lg~   87 (169)
                      .-|+||+|| |.|..|+..|.+
T Consensus       139 ~RiviEKPf-G~dl~Sa~~Ln~  159 (178)
T 2bh9_A          139 NRIIVEKPF-GRDLQSSDRLSN  159 (178)
T ss_dssp             EEEEECSCS-CSSHHHHHHHHH
T ss_pred             CEEEEECCC-CCCHHHHHHHHH
T ss_conf             216761443-356787999999


No 83 
>>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) - NAD(P)); 2.00A {Leuconostoc mesenteroides} (A:1-182)
Probab=25.07  E-value=49  Score=14.58  Aligned_cols=15  Identities=20%  Similarity=0.401  Sum_probs=6.6

Q ss_pred             HHHHHHHHHCCCCCE
Q ss_conf             998999862279627
Q gi|254780554|r   53 YEGLTDVIKNWRPEE   67 (169)
Q Consensus        53 ~~~l~~ii~~~~Pd~   67 (169)
                      .+.+.+.++.+..+.
T Consensus        55 r~~v~~~l~~~~~~~   69 (182)
T 1dpg_A           55 KQLVRDCIKDFTDDQ   69 (182)
T ss_dssp             HHHHHHHHGGGCSCH
T ss_pred             HHHHHHHHHHHCCCH
T ss_conf             999999998647888


No 84 
>>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics, structural genomics consortium, SGC, allosteric enzyme; HET: GLC BG6; 2.80A {Homo sapiens} (A:54-186,A:425-445)
Probab=24.43  E-value=51  Score=14.51  Aligned_cols=65  Identities=11%  Similarity=-0.025  Sum_probs=41.0

Q ss_pred             CCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEEC-CCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             98806999978887205899997199689998336873-889998889999999899986227962
Q gi|254780554|r    2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDVIKNWRPE   66 (169)
Q Consensus         2 ~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t-~~~~~~~~Rl~~I~~~l~~ii~~~~Pd   66 (169)
                      ++.-+.|+||-|-++.=.+.++..++.......-.|.. -+..+-.+=.-.|.+.+.+.+.++.++
T Consensus         3 ~E~G~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~ip~~~~~~t~~~LFd~IA~~i~~fl~~~~~~   68 (154)
T 3hm8_A            3 SERGDFLALDLGGTNFRVLLVRVTTGVQITSEIYSIPETVAQGSGQQLFDHIVDCIVDFQQKQGLS   68 (154)
T ss_dssp             CCCEEEEEEEESSSSEEEEEEEESSSEEEEEEEECCCHHHHTSBHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             CCEEEEEEEEECCCCEEEEEEEECCCCEEEEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             713789999968984899999977991688887656877724988999999999999999961889


No 85 
>>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermotoga maritima MSB8} (A:105-173)
Probab=22.37  E-value=43  Score=14.94  Aligned_cols=21  Identities=19%  Similarity=0.479  Sum_probs=17.0

Q ss_pred             HHHHHHHHCCCCCEEEEEHHH
Q ss_conf             989998622796277885033
Q gi|254780554|r   54 EGLTDVIKNWRPEEAAVEQVF   74 (169)
Q Consensus        54 ~~l~~ii~~~~Pd~vaiE~~F   74 (169)
                      +++.++.++|+|..|--|++|
T Consensus        49 ee~~~i~ke~~p~~vl~ddi~   69 (69)
T 2a6a_A           49 EELEEITKEFSPKIVLKDDLL   69 (69)
T ss_dssp             HHHHHHHHHHCCSEEEESSCC
T ss_pred             HHHHHHHHHCCCCEEECCCCC
T ss_conf             999999974499889778767


No 86 
>>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} (B:36-143)
Probab=22.12  E-value=56  Score=14.23  Aligned_cols=53  Identities=11%  Similarity=0.129  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHH-HHHHHHHHHHHHC----CCCEEEEC
Q ss_conf             99999989998622796277885033202412478899-9999999999860----16177526
Q gi|254780554|r   49 LCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLG-QARAIAILSPALA----RIPVSEYA  107 (169)
Q Consensus        49 l~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg-~arGvi~l~~~~~----~i~v~ey~  107 (169)
                      -..+.+.+.++.++|+|+.++|=.-     .-+. .+| -..+++--.-.+.    ++|+..+.
T Consensus        46 ~~kL~~aI~~~~~~~~p~~I~V~~t-----c~~~-iIGdDi~~v~~~~~~e~~~~~~~~ii~v~  103 (108)
T 1mio_B           46 GSNIKTAVKNIFSLYNPDIIAVHTT-----CLSE-TLGDDLPTYISQMEDAGSIPEGKLVIHTN  103 (108)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEEEC-----HHHH-HHTCCHHHHHHHHHHTTCSCTTCEEEEEC
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECC-----CHHH-HHCCCHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf             8999999999998509989999678-----6798-85688999999999855999886289850


Done!