Query gi|254780554|ref|YP_003064967.1| Holliday junction resolvase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 169 No_of_seqs 124 out of 1248 Neff 6.5 Searched_HMMs 33803 Date Wed Jun 1 19:46:57 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780554.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1hjr_A Holliday junction reso 100.0 0 0 304.6 20.4 156 6-162 2-157 (158) 2 >1vhx_A Putative holliday junc 99.8 2.8E-19 8.4E-24 139.4 8.6 116 3-126 1-120 (150) 3 >1kcf_A Hypothetical 30.2 KD p 98.6 1.5E-06 4.5E-11 60.9 12.1 153 2-154 37-238 (258) 4 >1nu0_A Hypothetical protein Y 98.2 2E-05 5.9E-10 54.0 9.3 93 4-106 2-94 (138) 5 >3bzc_A TEX; helix-turn-helix, 98.2 1.2E-05 3.5E-10 55.4 8.1 126 4-154 3-129 (142) 6 >1iv0_A Hypothetical protein; 98.0 7.4E-06 2.2E-10 56.7 4.9 91 5-106 1-91 (98) 7 >3i8b_A Xylulose kinase; strai 97.0 0.0015 4.3E-08 42.5 5.8 135 4-157 2-141 (163) 8 >3en9_A Glycoprotease, O-sialo 97.0 0.026 7.8E-07 34.7 12.0 101 2-110 3-113 (165) 9 >2a6a_A Hypothetical protein T 96.4 0.016 4.6E-07 36.2 7.2 96 1-109 9-106 (149) 10 >3c6a_A Terminase large subuni 96.3 0.071 2.1E-06 32.1 10.3 65 5-76 60-128 (232) 11 >3eno_A Putative O-sialoglycop 96.1 0.036 1.1E-06 33.9 7.9 102 2-111 3-115 (173) 12 >2ivn_A O-sialoglycoprotein en 96.0 0.067 2E-06 32.3 8.8 100 5-111 1-110 (166) 13 >2gel_A Putative GRAM negative 95.9 0.078 2.3E-06 31.8 8.8 93 5-109 1-95 (135) 14 >1saz_A Probable butyrate kina 94.3 0.13 4E-06 30.4 6.0 105 4-111 1-132 (221) 15 >2e1z_A Propionate kinase; TDC 93.7 0.27 8E-06 28.5 6.7 70 1-72 14-100 (195) 16 >1t6c_A Exopolyphosphatase; al 93.6 0.58 1.7E-05 26.5 10.6 99 2-109 9-120 (153) 17 >1zc6_A Probable N-acetylgluco 93.2 0.35 1E-05 27.8 6.5 60 5-67 11-71 (147) 18 >3hi0_A Putative exopolyphosph 93.0 0.67 2E-05 26.1 7.7 69 1-69 11-89 (121) 19 >3cpe_A Terminase, DNA packagi 92.9 0.75 2.2E-05 25.8 7.9 64 6-76 38-105 (209) 20 >2qm1_A Glucokinase; alpha-bet 92.9 0.36 1.1E-05 27.8 6.2 59 5-66 6-64 (150) 21 >2hoe_A N-acetylglucosamine ki 92.8 0.31 9.1E-06 28.2 5.8 57 5-64 2-58 (149) 22 >3gbt_A Gluconate kinase; LBA0 92.8 0.79 2.3E-05 25.7 8.3 65 3-70 1-74 (237) 23 >2e2o_A Hexokinase; acetate an 92.7 0.36 1.1E-05 27.7 6.0 67 4-75 1-70 (130) 24 >3khy_A Propionate kinase; csg 92.2 0.85 2.5E-05 25.5 7.5 67 6-74 3-88 (172) 25 >1sz2_A Glucokinase, glucose k 92.2 0.42 1.2E-05 27.4 5.9 58 1-67 10-67 (141) 26 >2ch5_A NAGK protein; transfer 92.2 0.33 9.9E-06 27.9 5.3 58 6-66 7-66 (153) 27 >2aa4_A Mannac kinase, putativ 92.2 0.43 1.3E-05 27.3 5.9 58 5-69 1-58 (134) 28 >1hux_A Activator of (R)-2-hyd 91.7 0.02 5.8E-07 35.5 -1.4 81 4-93 2-92 (127) 29 >3eo3_A Bifunctional UDP-N-ace 91.1 1.1 3.2E-05 24.8 7.0 59 2-65 17-75 (163) 30 >2iir_A Acetate kinase; transf 90.4 0.99 2.9E-05 25.0 6.2 68 5-74 1-93 (182) 31 >1nbw_A Glycerol dehydratase r 88.1 1.2 3.5E-05 24.6 5.3 60 6-65 3-62 (124) 32 >1u6z_A Exopolyphosphatase; al 88.1 2.1 6.1E-05 23.1 7.0 66 3-68 9-84 (117) 33 >3g25_A Glycerol kinase; IDP00 87.7 2.2 6.5E-05 22.9 6.5 58 6-66 7-72 (109) 34 >1z05_A Transcriptional regula 87.5 1.9 5.5E-05 23.3 6.0 57 6-66 4-60 (111) 35 >3h3n_X Glycerol kinase; ATP-b 87.2 2.3 6.9E-05 22.7 7.4 63 1-66 1-71 (107) 36 >1z6r_A MLC protein; transcrip 87.0 1.3 3.9E-05 24.2 5.0 57 6-66 4-60 (112) 37 >3djc_A Type III pantothenate 86.6 0.85 2.5E-05 25.5 3.9 62 6-76 3-64 (147) 38 >2itm_A Xylulose kinase, xylul 85.5 0.99 2.9E-05 25.0 3.7 58 7-67 2-67 (231) 39 >3cer_A Possible exopolyphosph 83.8 3.4 0.0001 21.7 10.3 100 2-110 13-126 (158) 40 >2dpn_A Glycerol kinase; therm 83.2 2 5.9E-05 23.2 4.5 60 5-64 1-66 (241) 41 >3bex_A Type III pantothenate 82.7 3.6 0.00011 21.6 5.6 58 7-72 5-64 (134) 42 >3htv_A D-allose kinase, allok 82.6 1.4 4.1E-05 24.1 3.5 63 5-71 7-69 (156) 43 >1g99_A Acetate kinase; alpha/ 81.7 3 9E-05 22.0 4.9 32 5-38 1-32 (189) 44 >3lm2_A Putative kinase; struc 80.3 3.5 0.0001 21.7 4.9 58 6-74 7-64 (99) 45 >2gup_A ROK family protein; su 79.8 1.1 3.4E-05 24.7 2.2 62 5-75 4-65 (134) 46 >1e4f_T Cell division protein 79.4 4.9 0.00014 20.8 6.1 41 1-41 4-44 (108) 47 >3hz6_A Xylulokinase; xylulose 79.4 2.6 7.8E-05 22.4 4.0 65 3-70 3-77 (241) 48 >1ig8_A Hexokinase PII, hexoki 73.4 6.8 0.0002 19.9 4.8 121 3-130 4-149 (165) 49 >1vgv_A UDP-N-acetylglucosamin 72.8 7.4 0.00022 19.7 6.9 79 39-133 61-141 (213) 50 >3epq_A Putative fructokinase; 71.9 6.4 0.00019 20.0 4.3 59 5-73 3-61 (147) 51 >1v4v_A UDP-N-acetylglucosamin 71.0 8.1 0.00024 19.4 7.0 79 39-133 66-146 (204) 52 >3dzc_A UDP-N-acetylglucosamin 70.1 8.5 0.00025 19.3 6.8 78 40-133 87-166 (211) 53 >2ap1_A Putative regulator pro 68.4 9.3 0.00027 19.1 7.9 65 3-71 22-87 (143) 54 >3i33_A Heat shock-related 70 67.3 3.2 9.3E-05 21.9 2.0 20 4-23 22-41 (230) 55 >3beo_A UDP-N-acetylglucosamin 64.9 11 0.00032 18.6 7.2 55 41-107 72-126 (211) 56 >2w40_A Glycerol kinase, putat 64.1 11 0.00033 18.5 8.0 64 4-67 2-75 (110) 57 >3l0q_A Xylulose kinase; xlylu 62.6 12 0.00035 18.4 5.5 56 6-64 6-69 (297) 58 >3ifr_A Carbohydrate kinase, F 60.1 13 0.00039 18.1 7.3 62 1-65 3-72 (242) 59 >1yuw_A Heat shock cognate 71 59.1 4.4 0.00013 21.1 1.4 18 6-23 5-22 (215) 60 >2ews_A Pantothenate kinase; P 55.4 13 0.00038 18.2 3.3 54 3-72 18-71 (120) 61 >2h3g_X Biosynthetic protein; 54.8 16 0.00048 17.5 7.9 89 7-109 2-91 (121) 62 >2d4w_A Glycerol kinase; alpha 54.2 17 0.00049 17.5 6.1 57 6-65 3-67 (244) 63 >1zbs_A Hypothetical protein P 53.6 7.5 0.00022 19.6 1.9 46 6-57 1-46 (129) 64 >2kho_A Heat shock protein 70; 53.1 9.6 0.00029 18.9 2.4 18 6-23 3-20 (163) 65 >1dkg_D Molecular chaperone DN 52.1 7.9 0.00023 19.5 1.8 18 6-23 3-20 (161) 66 >2v7y_A Chaperone protein DNAK 50.2 13 0.00037 18.2 2.6 18 6-23 3-20 (183) 67 >1woq_A Inorganic polyphosphat 47.4 21 0.00063 16.8 8.3 54 6-62 13-68 (143) 68 >3jvp_A Ribulokinase; PSI-II, 45.8 23 0.00067 16.7 5.3 62 3-66 3-83 (224) 69 >2z1c_A Hydrogenase expression 45.3 23 0.00068 16.6 4.0 59 3-61 5-73 (75) 70 >3js6_A Uncharacterized PARM p 43.7 17 0.0005 17.4 2.4 18 4-21 3-20 (214) 71 >2zf5_O Glycerol kinase; hyper 43.3 25 0.00073 16.4 6.5 55 7-64 5-67 (238) 72 >1qh5_A Glyoxalase II, protein 40.7 27 0.0008 16.2 3.2 32 5-36 1-32 (90) 73 >2p3r_A Glycerol kinase; glyce 39.0 29 0.00085 16.0 7.3 57 6-65 4-68 (510) 74 >2fsj_A Hypothetical protein T 32.3 28 0.00084 16.1 2.1 19 3-21 19-37 (212) 75 >1jce_A ROD shape-determining 30.7 30 0.0009 15.9 2.0 102 6-119 4-140 (175) 76 >1zwx_A SMCL, sphingomyelinase 29.3 41 0.0012 15.1 3.7 50 25-74 7-56 (301) 77 >1xm8_A Glyoxalase II; structu 29.3 41 0.0012 15.1 2.5 32 5-36 1-32 (92) 78 >2d0o_A DIOL dehydratase-react 29.1 42 0.0012 15.0 7.5 59 6-64 3-62 (131) 79 >3cqy_A Anhydro-N-acetylmurami 28.9 42 0.0012 15.0 6.8 124 3-130 3-158 (190) 80 >1bdg_A Hexokinase; phosphotra 28.7 42 0.0013 15.0 7.0 64 4-67 6-73 (152) 81 >2yhx_A Hexokinase B; transfer 26.2 47 0.0014 14.7 8.4 63 4-66 6-71 (173) 82 >2bh9_A G6PD, glucose-6-phosph 25.2 49 0.0014 14.6 4.2 21 66-87 139-159 (178) 83 >1dpg_A G6PD, glucose 6-phosph 25.1 49 0.0015 14.6 3.9 15 53-67 55-69 (182) 84 >3hm8_A Hexokinase-3; glucose, 24.4 51 0.0015 14.5 5.9 65 2-66 3-68 (154) 85 >2a6a_A Hypothetical protein T 22.4 43 0.0013 14.9 1.6 21 54-74 49-69 (69) 86 >1mio_B Nitrogenase molybdenum 22.1 56 0.0017 14.2 3.0 53 49-107 46-103 (108) No 1 >>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} (A:) Probab=100.00 E-value=0 Score=304.61 Aligned_cols=156 Identities=40% Similarity=0.668 Sum_probs=150.6 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHH Q ss_conf 69999788872058999971996899983368738899988899999998999862279627788503320241247889 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKL 85 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~l 85 (169) ||||||||+++||||++|.++++++++++|+|+++ +.+.++|+..|++.+.+++++|+|+.|+||++||++|+++++++ T Consensus 2 rvLgiDpg~~~tG~av~~~~~~~~~~i~~g~i~~~-~~~~~~R~~~i~~~l~~~l~~~~p~~v~iE~~~~~~~~~s~~~l 80 (158) T 1hjr_A 2 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKL 80 (158) T ss_dssp EEEEEECCSSEEEEEEEEEETTEEEEEEEEEEECC-CSCHHHHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHH T ss_pred EEEEECCCCCCEEEEEEEEECCEEEEEEEEEEECC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCHHHHHHH T ss_conf 89998457784689999966997899995348459-87779999999999999986359866999841221573578889 Q ss_pred HHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHH Q ss_conf 99999999999860161775260677765316888899999999999628899999556789999999764168756 Q gi|254780554|r 86 GQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162 (169) Q Consensus 86 g~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~~~~~D~aDAlAiAl~h~~~~~~~~ 162 (169) ++++|++++++.++++|+.+|+|+++||++||+|+|+||||++||+++++...++++|++||+|+|+||+++.++.+ T Consensus 81 ~~~~G~i~~~~~~~~ipi~~v~P~~vKk~~tG~G~A~Ke~v~~~v~~~~~~~~~~~dd~aDA~aia~~~~~~~~~~~ 157 (158) T 1hjr_A 81 GQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAM 157 (158) T ss_dssp HHHHHHHHHHHHTTTCCEEEEEHHHHHHHHTSSSSCCHHHHHHHHHHHTTCCCCCSSCTHHHHHHHHHHHHTTSSSC T ss_pred HHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 99999999999975973899768998876105997799999999999839899999987999999999988734657 No 2 >>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} (A:) Probab=99.79 E-value=2.8e-19 Score=139.38 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=97.1 Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHH Q ss_conf 88069999788872058999971996899983368738899988899999998999862279627788503320241247 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVAT 82 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~ 82 (169) .+|||||||||+++||||+.|..+.-... .+++...+.. ...+++.|.+++++|+|+.++||.+|..++..+. T Consensus 1 ~~mriLgiD~G~~riG~Av~d~~~~~a~~--l~~i~~~~~~-----~~~~~~~L~~ii~~~~~~~iviG~p~~~~g~~~~ 73 (150) T 1vhx_A 1 XSLRILGLDLGTKTLGVALSDEXGWTAQG--IETIKINEAE-----GDYGLSRLSELIKDYTIDKIVLGFPKNXNGTVGP 73 (150) T ss_dssp -CEEEEEEEECSSEEEEEEECTTSSSEEE--EEEEECBGGG-----TBCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCH T ss_pred CCCEEEEEEECCCEEEEEEECCCCCCCCC--EEEEEECCCC-----CHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHH T ss_conf 98439999927998999997389884356--0446503456-----2268999999997634362885164234776217 Q ss_pred HHHHHHHHHHHHHHHHCCCCEE----EECHHHHHHHHCCCCCCCHHHH Q ss_conf 8899999999999986016177----5260677765316888899999 Q gi|254780554|r 83 LKLGQARAIAILSPALARIPVS----EYAPNTIKKAVIGVGHGDKKQI 126 (169) Q Consensus 83 ~~lg~arGvi~l~~~~~~i~v~----ey~P~~vKkavtG~G~A~KeqV 126 (169) ...++|+.+...+.+.++||+ .|+|.++|+.++|+|.+.|+|- T Consensus 74 -~~~~~~~~~~~l~~~~~i~v~~~dE~~ss~~a~~~l~~~g~~~k~~k 120 (150) T 1vhx_A 74 -RGEASQTFAKVLETTYNVPVVLWDERLTTXAAEKXLIAADVSRQKRK 120 (150) T ss_dssp -HHHHHHHHHHHHHHHHCSCEEEECCSSCHHHHHHHHHHTTCCHHHHH T ss_pred -HHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCC T ss_conf -88999999997355778327984155579999999997599700034 No 3 >>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} (A:) Probab=98.59 E-value=1.5e-06 Score=60.92 Aligned_cols=153 Identities=15% Similarity=0.110 Sum_probs=94.2 Q ss_pred CCCCEEEEECCCCCEEEEEEEEEEC-CEEEEEEEEEEECCCC----------CCHHHHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 9880699997888720589999719-9689998336873889----------9988899999998999862279627788 Q gi|254780554|r 2 RKSIRIIGIDPGLRRTGWGIVDVAG-DNLCFVSSGTIVSCVR----------QSLAFRLCQLYEGLTDVIKNWRPEEAAV 70 (169) Q Consensus 2 ~~~MrILGIDPGl~~tG~avie~~~-~~~~li~~g~I~t~~~----------~~~~~Rl~~I~~~l~~ii~~~~Pd~vai 70 (169) +..++||+||.|+.+..||.++.+. ..+.++++..+..... .....=....++-++.++..|+||++.| T Consensus 37 ~~~~sIlSID~GikNlA~~~l~~~~~~~~~i~~W~kl~l~~~~~~~~~~~~~~~p~~~s~~a~~lis~li~~~~pd~vlI 116 (258) T 1kcf_A 37 YPTSRVLGIDLGIKNFSYCFASQNEDSKVIIHNWSVENLTEKNGLDIQWTEDFQPSSMADLSIQLFNTLHEKFNPHVILM 116 (258) T ss_dssp CCCSSEEEEEECSTTEEEEEEEECTTSCEEEEEEEEECTTSCCTTCCCCCCCCSHHHHHHHHHHHHHHHHHHHCCSEEEE T ss_pred CCCCCEEEEECCCHHHEEEEECCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 89983789973710200024513789875567600522266667542124568859999999999998764326998997 Q ss_pred EHHHHCC-CHH---HHHHHHHHHHHHHHHH----------HHCCCCEEEECHHHHHHHH-----CCCCCCCHHHHHHHHH Q ss_conf 5033202-412---4788999999999999----------8601617752606777653-----1688889999999999 Q gi|254780554|r 71 EQVFVNK-DAV---ATLKLGQARAIAILSP----------ALARIPVSEYAPNTIKKAV-----IGVGHGDKKQIHMMLK 131 (169) Q Consensus 71 E~~F~~~-n~~---t~~~lg~arGvi~l~~----------~~~~i~v~ey~P~~vKkav-----tG~G~A~KeqV~~mV~ 131 (169) |.+=|.. |.. .++.++-.-+.+...+ ...+..|....|..|-++- ....+..|.-=..+|+ T Consensus 117 ErQr~Rs~~sav~e~~Lrv~ilE~mLya~l~~~~~~~~~~~~~~~~V~~v~p~~v~~yw~~~~~~~s~~~~Kk~~i~lv~ 196 (258) T 1kcf_A 117 ERQRYRSGIATIPEWTLRVNMLESMLYALHYAEKRNSIEQKIQYPFLLSLSPKSTYSYWASVLNTKASFSKKKSRVQMVK 196 (258) T ss_dssp EECCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHC-------CCEEEECCHHHHHHHHHHHHC-------CCCHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH T ss_conf 64666567650346678899999999999998620033444662147765777888875113455553420399999999 Q ss_pred HHCC-------------------CCCCCCCCHHHHHHHHHHH Q ss_conf 9628-------------------8999995567899999997 Q gi|254780554|r 132 MLMP-------------------ESFFKGKDAADALAIAVCH 154 (169) Q Consensus 132 ~ll~-------------------~~~~~~~D~aDAlAiAl~h 154 (169) .++. ....|.||.+|++=-|++- T Consensus 197 ~~l~~~~~~~~~~~~~~~~~~~~~~~~K~DDLaDslLqala~ 238 (258) T 1kcf_A 197 ELIDGQKILFENEEALYKWNNGSRVEFKKDDMADSALIASGW 238 (258) T ss_dssp HHHHTTSEEESSHHHHHHHHHCCSTTTHHHHHHHHHHHHHHH T ss_pred HHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHH T ss_conf 998605223676267899998612678743467689999999 No 4 >>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} (A:) Probab=98.15 E-value=2e-05 Score=53.99 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=61.5 Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHH Q ss_conf 80699997888720589999719968999833687388999888999999989998622796277885033202412478 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATL 83 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~ 83 (169) +-||||||||..+||+|+.|..+.-.. ..+++..+..... .+.|.+++.+|+|+.++|--|.-..+..+. T Consensus 2 ~krilgiD~G~kriGiAi~d~~~~ia~--p~~~i~~~~~~~~-------~~~l~~li~~~~~~~iViGlP~~~~g~~~~- 71 (138) T 1nu0_A 2 SGTLXAFDFGTKSIGVAVGQRITGTAR--PLPAIKAQDGTPD-------WNIIERLLKEWQPDEIIVGLPLNXDGTEQP- 71 (138) T ss_dssp CCEEEEEECCSSEEEEEEEETTTTEEE--EEEEEEEETTEEC-------HHHHHHHHHHHCCSEEEEEEEECTTSCBCH- T ss_pred CCCEEEEEECCCEEEEEEECCCCCCCC--CEEEEECCCCCHH-------HHHHHHHHHHCCCCEEEECCCCCCCCCCCH- T ss_conf 976899991799799999479987401--4078981677268-------999999864248738996443477787578- Q ss_pred HHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 89999999999998601617752 Q gi|254780554|r 84 KLGQARAIAILSPALARIPVSEY 106 (169) Q Consensus 84 ~lg~arGvi~l~~~~~~i~v~ey 106 (169) .-..++--+-......++||+.+ T Consensus 72 ~a~~v~~f~~~L~~~~~l~v~~v 94 (138) T 1nu0_A 72 LTARARKFANRIHGRFGVEVKLH 94 (138) T ss_dssp HHHHHHHHHHHHHHHHCCCEEEE T ss_pred HHHHHHHHHHHHHHHHCCCEEEE T ss_conf 99999999999998629996997 No 5 >>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} (A:326-467) Probab=98.15 E-value=1.2e-05 Score=55.39 Aligned_cols=126 Identities=16% Similarity=0.106 Sum_probs=74.5 Q ss_pred CCEEEEECCCCC-EEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHH Q ss_conf 806999978887-2058999971996899983368738899988899999998999862279627788503320241247 Q gi|254780554|r 4 SIRIIGIDPGLR-RTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVAT 82 (169) Q Consensus 4 ~MrILGIDPGl~-~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~ 82 (169) +.||||||||+. ++|+|+.|..|. +++...+....... +-....+.|.+++.+|+|+.|+|-.-- .. T Consensus 3 ~~rilaiD~G~k~riG~A~~d~~g~---i~~~~~~~~~~~~~---~~~~~~~~l~~li~~~~~~~iViG~g~------~~ 70 (142) T 3bzc_A 3 PRATLGLDPGLRTGVKVAVVDATGK---LLDTATVYPHAPKN---QWDQTLAVLAALCAKHQVELIAIGNGT------AS 70 (142) T ss_dssp SCCEEEEECCSSSCEEEEEECTTSC---EEEEEEECCSGGGC---CHHHHHHHHHHHHHHHTCCEEEEESST------TH T ss_pred CCEEEEECCCCCCCEEEEEECCCCC---EEEEEEECCCCCHH---HHHHHHHHHHHHHHHCCCCEEEECCCC------HH T ss_conf 9716776799866259999989998---78867875689544---499999999999998199289988981------35 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH Q ss_conf 889999999999998601617752606777653168888999999999996288999995567899999997 Q gi|254780554|r 83 LKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCH 154 (169) Q Consensus 83 ~~lg~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~~~~~D~aDAlAiAl~h 154 (169) -.+-+++.-......+.++||+.+--.--.. ++-...... .....+.|.-||++++..- T Consensus 71 ~~~~~~~~~~~~l~~~~~i~V~~vDE~~st~----------~a~~~~~~~---~~~~~~~d~~~Av~i~~~l 129 (142) T 3bzc_A 71 RETDKLAGELIKKYPGMKLTKIMVSEAGASV----------YSASELAAK---EFPELDVSLRGAVSIARRL 129 (142) T ss_dssp HHHHHHHHHHHHHCGGGCCEEEEECCHHHHH----------HHHSHHHHH---HCTTSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCHHHHH----------HHCCHHHHH---HCCCCCHHHHHHHHHHHHC T ss_conf 8999999999986767886289933324788----------761889885---5757883077888888860 No 6 >>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} (A:) Probab=98.02 E-value=7.4e-06 Score=56.66 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=58.6 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHH Q ss_conf 06999978887205899997199689998336873889998889999999899986227962778850332024124788 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLK 84 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~ 84 (169) |||||||||+.++|.|+-|..+.-.. -.+++.... .....+.|.+++++|+|+.++|=-|+-..+..+... T Consensus 1 MrilgiD~G~kriGvAi~d~~~~~a~--pl~~i~~~~-------~~~~~~~l~~li~~~~v~~iVvGlP~~~~g~~~~~~ 71 (98) T 1iv0_A 1 MRVGALDVGEARIGLAVGEEGVPLAS--GRGYLVRKT-------LEEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQA 71 (98) T ss_dssp CCEEEEEESSSEEEEEEECSCCSSCC--CEEEEECCC-------HHHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCS T ss_pred CCEEEEEECCCEEEEEEECCCCCEEE--CEEEEECCC-------CHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHH T ss_conf 92999980899899999259998781--678898678-------658999999999873625078168977899918899 Q ss_pred HHHHHHHHHHHHHHCCCCEEEE Q ss_conf 9999999999998601617752 Q gi|254780554|r 85 LGQARAIAILSPALARIPVSEY 106 (169) Q Consensus 85 lg~arGvi~l~~~~~~i~v~ey 106 (169) . .++- -...+.+.++||+.+ T Consensus 72 ~-~i~~-f~~~l~~~~i~v~~~ 91 (98) T 1iv0_A 72 G-KVLP-LVEALRARGVEVELW 91 (98) T ss_dssp S-TTHH-HHHHHHHTTCEEEEE T ss_pred H-HHHH-HHHHHHHCCCCEEEE T ss_conf 9-9999-999986479989998 No 7 >>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} (A:1-74,A:255-284,A:436-494) Probab=97.04 E-value=0.0015 Score=42.51 Aligned_cols=135 Identities=12% Similarity=-0.012 Sum_probs=94.1 Q ss_pred CCE--EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCC--CHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCH Q ss_conf 806--9999788872058999971996899983368738899--988899999998999862279627788503320241 Q gi|254780554|r 4 SIR--IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDA 79 (169) Q Consensus 4 ~Mr--ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~--~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~ 79 (169) +|+ +||||-|++++=.+++|.++++ ++......++... +..+=+..+.+.+.++++.++...+++=..- T Consensus 2 sm~~~~lgID~Gtt~~k~~l~d~~~g~--ii~~~~~p~~g~~e~d~~~~~~~~~~~~~~~~~~~~I~aIgis~~~----- 74 (163) T 3i8b_A 2 SLRTLVAGVDTSTQSCKVRVTDAETGE--LVRFGQAKHPNGTSVDPSYWWSAFQEAAEQAGGLDDVSALAVGGQQ----- 74 (163) T ss_dssp CCSCEEEEEEECSSEEEEEEEETTTCC--EEEEEEEECCSSSEECTHHHHHHHHHHHHHTTCSTTEEEEEEEECS----- T ss_pred CCCCEEEEEECCCCCEEEEEEECCCCE--EEEEEEECCCCCCEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCC----- T ss_conf 877579999725503488999899996--9999960088981089999999999999972771044699994687----- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHH Q ss_conf 24788999999999999860161775260677765316888899999999999628899-9995567899999997641 Q gi|254780554|r 80 VATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESF-FKGKDAADALAIAVCHAYH 157 (169) Q Consensus 80 ~t~~~lg~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~-~~~~D~aDAlAiAl~h~~~ 157 (169) .++ ...+..+...+..-..+++.+..-|.+.=+.+.+++..+|+.+. .++.|++=|++-|++-+.- T Consensus 75 gv~------------~~~~~~l~~~~~~g~~i~~i~~~GGgsrs~~~~qi~adv~g~~v~~~~~~E~~a~GAAi~Aa~~ 141 (163) T 3i8b_A 75 PAI------------AGKNVEGGCLLAPGGGDNAXASLGLGXKSEAIRTLAPSILGXDVTRPATDEYVAIGAARQAAWV 141 (163) T ss_dssp TTT------------TTTTSTTCCEECCCEEHHHHHHHHTTCGCHHHHHHHHHHHTSCEEEECCCCHHHHHHHHHHHHH T ss_pred HHH------------HHCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHH T ss_conf 999------------7538887764246556556654034550889999999987994696788858999999999998 No 8 >>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* (A:1-125,A:287-326) Probab=97.00 E-value=0.026 Score=34.74 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=59.3 Q ss_pred CCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCC------CCH-HHHHHHHHHHHHHHHHCCC---CCEEEEE Q ss_conf 98806999978887205899997199689998336873889------998-8899999998999862279---6277885 Q gi|254780554|r 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR------QSL-AFRLCQLYEGLTDVIKNWR---PEEAAVE 71 (169) Q Consensus 2 ~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~------~~~-~~Rl~~I~~~l~~ii~~~~---Pd~vaiE 71 (169) .+.|+|||||-+...|+.|+++.++.- +..-.+...+. ... ..-...|...+++++++.+ +|.+++= T Consensus 3 m~~M~iLaIdTS~~~~sval~~~~~~i---~~~~~~~~~~~~~g~~~~~a~~~H~e~L~~~i~~~L~~~~i~~id~Iavs 79 (165) T 3en9_A 3 MDPMICLGLEGTAEKTGVGIVTSDGEV---LFNKTIMYKPPKQGINPREAADHHAETFPKLIKEAFEVVDKNEIDLIAFS 79 (165) T ss_dssp CCSCEEEEEECSSSEEEEEEEETTSCE---EEEEEEECCCCCSSSSCCCHHHHHHHHHHHHHHHHHHHSCGGGCCEEEEE T ss_pred CCCCEEEEEECCCHHHEEEEEECCCCE---EEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE T ss_conf 887569999865131367999799929---98866876579899991899999999999999999975895358889996 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHH Q ss_conf 033202412478899999999999986016177526067 Q gi|254780554|r 72 QVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNT 110 (169) Q Consensus 72 ~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~~ 110 (169) . +-..-|.+.+|-+- +.-.+.-.++|++.++..+ T Consensus 80 ~---GPGsfTgLRVG~~~--AkgLa~al~iPlv~vs~le 113 (165) T 3en9_A 80 Q---GPGLGPSLRVTATV--ARTLSLTLKKPIIGVNHCI 113 (165) T ss_dssp E---ESSCHHHHHHHHHH--HHHHHHHHTCCEEEEEHHH T ss_pred C---CCCCHHHHHHHHHH--HHHHHHHCCCCCCCCCHHH T ss_conf 7---98618879999999--9999985599836642466 No 9 >>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermotoga maritima MSB8} (A:1-104,A:174-218) Probab=96.39 E-value=0.016 Score=36.15 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=53.7 Q ss_pred CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCC-- Q ss_conf 998806999978887205899997199689998336873889998889999999899986227962778850332024-- Q gi|254780554|r 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKD-- 78 (169) Q Consensus 1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n-- 78 (169) |.++++||+||-+ +.|+.|+++ +++... ........+.+.|..+ +.+++++.+-..--+..+.++.. T Consensus 9 ~~~~~~ILaIDTS-~~~sVAi~~--~~~il~-----~~~~~~r~hse~L~p~---Ie~lL~~a~l~~~dId~Iavs~GPG 77 (149) T 2a6a_A 9 HHHHXNVLALDTS-QRIRIGLRK--GEDLFE-----ISYTGEKKHAEILPVV---VKKLLDELDLKVKDLDVVGVGIGPG 77 (149) T ss_dssp ----CEEEEEECS-SSEEEEEEE--TTEEEE-----EEEESCGGGGGHHHHH---HHHHHHHHTCCGGGCSEEEEECCSS T ss_pred CCCCCEEEEEECC-CCCEEEEEE--CCEEEE-----EEECCCHHHHHHHHHH---HHHHHHHCCCCHHHHHEEEEECCCC T ss_conf 5653603207616-437799998--999999-----9702767999999999---9999998499979800036615887 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEECHH Q ss_conf 1247889999999999998601617752606 Q gi|254780554|r 79 AVATLKLGQARAIAILSPALARIPVSEYAPN 109 (169) Q Consensus 79 ~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~ 109 (169) .-|.+.+|-+ ++.-.+...++|++.++|+ T Consensus 78 SFTGLRIGls--~AKgLa~~~~iPligVs~~ 106 (149) T 2a6a_A 78 GLTGLRVGIA--TVVGLVSPYDIPVAPLNIS 106 (149) T ss_dssp CHHHHHHHHH--HHHHHHGGGTCCEEEECCC T ss_pred CCHHHHHHHH--HHHHHHHHCCCCCCCCCCC T ss_conf 5210678999--9988986368860146749 No 10 >>3c6a_A Terminase large subunit; terminase nuclease, viral protein; 1.16A {Enterobacteria phage RB49} PDB: 3c6h_A (A:) Probab=96.34 E-value=0.071 Score=32.10 Aligned_cols=65 Identities=9% Similarity=-0.057 Sum_probs=46.5 Q ss_pred CEEEEECCC----CCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHC Q ss_conf 069999788----872058999971996899983368738899988899999998999862279627788503320 Q gi|254780554|r 5 IRIIGIDPG----LRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76 (169) Q Consensus 5 MrILGIDPG----l~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~ 76 (169) -.++|+||+ ...+.+.|+...++...++.....+.-+-.. ..+.+.++.+.|+|..++||.-.++ T Consensus 60 ~~~~~~D~A~g~~~D~ta~~v~~~~~~~~~~v~~~~~~~~~~~~-------~~~~i~~l~~~~~~~~i~vE~~~~g 128 (232) T 3c6a_A 60 KYVATLDCSEGRGQDYHALQIIDITEFPYKQVAVYHSNTTSHFI-------LPDIVFKYLMMYNECPVYIELNSTG 128 (232) T ss_dssp CEEEEEECCCSSSSCCEEEEEEECSSSSEEEEEEEEESCCCTTT-------HHHHHHHHHHHTTSCCEEEBCSHHH T ss_pred EEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCHHH-------HHHHHHHHHHHCCCCEEEEEECCCH T ss_conf 49999974787688878899999248870489998145768889-------9999999998715662999967858 No 11 >>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} (A:1-126,A:288-334) Probab=96.14 E-value=0.036 Score=33.91 Aligned_cols=102 Identities=8% Similarity=0.006 Sum_probs=55.6 Q ss_pred CCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEEC-CCCCCHH---HH--HHHHHHHHHHHHHCCC-----CCEEEE Q ss_conf 98806999978887205899997199689998336873-8899988---89--9999998999862279-----627788 Q gi|254780554|r 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-CVRQSLA---FR--LCQLYEGLTDVIKNWR-----PEEAAV 70 (169) Q Consensus 2 ~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t-~~~~~~~---~R--l~~I~~~l~~ii~~~~-----Pd~vai 70 (169) .+.|+|||||-+...|+.|+++...- . .....-.. +.+...+ .| ...+...+++++++.. .|.|++ T Consensus 3 m~~M~ILgIeTS~~~~svAl~~dg~i--l-~~~~~e~~~~~~g~~~~~a~~~H~~~l~~~i~~~L~~agi~~~diD~Vav 79 (173) T 3eno_A 3 MDPMIVLGLEGTAHTISCGIIDESRI--L-AMESSMYRPKTGGIRPLDAAVHHSEVIDTVISRALEKAKISIHDIDLIGF 79 (173) T ss_dssp CCCCEEEEEECSSSEEEEEEEESSCC--C-EEEEEECCCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCEEEE T ss_pred CCCCEEEEEECCCCCEEEEEEECCEE--E-EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE T ss_conf 76857999975643118999989989--8-99999722787986758999999999999999999975986412005774 Q ss_pred EHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHH Q ss_conf 50332024124788999999999999860161775260677 Q gi|254780554|r 71 EQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTI 111 (169) Q Consensus 71 E~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~~v 111 (169) ...|-+...+--.-....-.+...++|++.+...+. T Consensus 80 -----s~GPG~~t~Lrvg~~~ak~la~~~~~Plv~V~hl~a 115 (173) T 3eno_A 80 -----SMGPGLAPSLRVTATAARTISVLTGKPIIGVNHPLG 115 (173) T ss_dssp -----ECSSSCHHHHHHHHHHHHHHHHHHTCCCEEECHHHH T ss_pred -----ECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHH T ss_conf -----033565545046778988887522534203234999 No 12 >>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* (A:1-118,A:283-330) Probab=96.02 E-value=0.067 Score=32.27 Aligned_cols=100 Identities=11% Similarity=0.059 Sum_probs=52.3 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEEC---CCCCCHHH---H--HHHHHHHHHHHHHCCCCCEEEEEHHHHC Q ss_conf 06999978887205899997199689998336873---88999888---9--9999998999862279627788503320 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS---CVRQSLAF---R--LCQLYEGLTDVIKNWRPEEAAVEQVFVN 76 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t---~~~~~~~~---R--l~~I~~~l~~ii~~~~Pd~vaiE~~F~~ 76 (169) |+|||||-+...++.|+++... . +. ....+ +.+-..+. | -..|...+++++++.+.+.--+.-+.+. T Consensus 1 M~ILgIeTS~~~~svalv~dg~--i--l~-~~~~~~~~~~~g~~~~~~~~~Hs~~l~~~i~~~L~~agi~~~did~Iavt 75 (166) T 2ivn_A 1 MLALGIEGTAHTLGIGIVSEDK--V--LA-NVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIAFS 75 (166) T ss_dssp CCEEEEECSSSEEEEEEECSSC--E--EE-EEEEECCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEEE T ss_pred CEEEEEECCCCCEEEEEEECCE--E--EE-EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE T ss_conf 9199998566130899998999--9--99-98886444779838179999999999999999999739984314225675 Q ss_pred CCHH--HHHHHHHHHHHHHHHHHHCCCCEEEECHHHH Q ss_conf 2412--4788999999999999860161775260677 Q gi|254780554|r 77 KDAV--ATLKLGQARAIAILSPALARIPVSEYAPNTI 111 (169) Q Consensus 77 ~n~~--t~~~lg~arGvi~l~~~~~~i~v~ey~P~~v 111 (169) ..|- +.+.+|. ....-.+...++|++.+...+. T Consensus 76 ~GPGs~tgLRvg~--~~Ak~La~~~~iPlv~V~hl~a 110 (166) T 2ivn_A 76 QGPGLGPALRVVA--TAARALAVKYRKPIVGVNHCIA 110 (166) T ss_dssp EESSCHHHHHHHH--HHHHHHHHHTTCCEEEEEHHHH T ss_pred ECCCCCHHHHHHH--HHHHHHHHHCCCCCCCCCHHHH T ss_conf 0576431279999--9999988642655202026999 No 13 >>2gel_A Putative GRAM negative resuscitation promoting factor; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium LT2} PDB: 2gem_A 1okj_A (A:1-93,A:190-231) Probab=95.90 E-value=0.078 Score=31.84 Aligned_cols=93 Identities=11% Similarity=0.189 Sum_probs=52.1 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCC--HHHH Q ss_conf 06999978887205899997199689998336873889998889999999899986227962778850332024--1247 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKD--AVAT 82 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n--~~t~ 82 (169) |+||+||-+...+..|+++ +++. +.. .+ .....+.+. |...+++++++.+...--+..+.++.. .-|. T Consensus 1 M~iLaIDTS~~~~~vAl~~--d~~i--l~~--~~-~~~~~hse~---L~~~I~~lL~~a~i~~~dId~Iavs~GPGSFTG 70 (135) T 2gel_A 1 MRILAIDTATEACSVALWN--NGTI--NAH--FE-LCPREHTQR---ILPMVQEILAASGASLNEIDALAFGRGPGSFTG 70 (135) T ss_dssp CEEEEEECSSSEEEEEEEE--TTEE--EEE--EE-ECCSCCHHH---HHHHHHHHHHHTTCCGGGCSEEEEECCSSCHHH T ss_pred CCEEEEECCCCCEEEEEEE--CCEE--EEE--EE-ECCHHHHHH---HHHHHHHHHHHHCCCCHHHHHHEEECCCCCCHH T ss_conf 9899999277271999999--9999--999--99-654899999---999999998550022123044300035664233 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECHH Q ss_conf 889999999999998601617752606 Q gi|254780554|r 83 LKLGQARAIAILSPALARIPVSEYAPN 109 (169) Q Consensus 83 ~~lg~arGvi~l~~~~~~i~v~ey~P~ 109 (169) +.+|-+ ++.-.+.-.++|++.++.. T Consensus 71 lRVgla--~AkgLa~~~~iPligvs~~ 95 (135) T 2gel_A 71 VRIGIG--IAQGLALGANLPMIGVSAA 95 (135) T ss_dssp HHHHHH--HHHHHHHTTTCCEEEECCH T ss_pred HHHHHH--HHHHHHHHCCCCCCCCCCH T ss_conf 778899--9999998638987640599 No 14 >>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} (A:1-172,A:333-381) Probab=94.25 E-value=0.13 Score=30.38 Aligned_cols=105 Identities=17% Similarity=0.100 Sum_probs=54.6 Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEE-EEEEEEEEECCC----CCCHHHHHHHHHHHHHHH-HHCCCCCEEEEEH----- Q ss_conf 80699997888720589999719968-999833687388----999888999999989998-6227962778850----- Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNL-CFVSSGTIVSCV----RQSLAFRLCQLYEGLTDV-IKNWRPEEAAVEQ----- 72 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~-~li~~g~I~t~~----~~~~~~Rl~~I~~~l~~i-i~~~~Pd~vaiE~----- 72 (169) .||||-|.||+++|=.|+.+.+..-+ .-+.+..-+..+ .+.++.|...|.+.|.+- ++-..+|.|+--. T Consensus 1 ~~kILvINPGSTSTKIAvfe~e~~v~~~~i~H~~eEL~~f~~i~dQ~~~R~~~I~~~L~e~gi~~~~ldAVVgRGGll~P 80 (221) T 1saz_A 1 XFRILTINPGSTSTKLSIFEDERXVKXQNFSHSPDELGRFQKILDQLEFREKIARQFVEETGYSLSSFSAFVSRGGLLDP 80 (221) T ss_dssp CCEEEEEEECSSEEEEEEEETTEEEEEEEEECCHHHHHTCSSGGGGHHHHHHHHHHHHHTTTCCGGGCSEEEEECCSCSC T ss_pred CCEEEEECCCCHHHEEEEEECCCCEEECEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC T ss_conf 97499985781756237893886123442143210104445301058899999999998769983514779980898765 Q ss_pred ---------------HHHCCCHHHHHHHHHHHHHHHHH-HHHCCCCEEEECHHHH Q ss_conf ---------------33202412478899999999999-9860161775260677 Q gi|254780554|r 73 ---------------VFVNKDAVATLKLGQARAIAILS-PALARIPVSEYAPNTI 111 (169) Q Consensus 73 ---------------~F~~~n~~t~~~lg~arGvi~l~-~~~~~i~v~ey~P~~v 111 (169) +.-+++...+-.|| |++-.. +...|+|.|-+-|-.| T Consensus 81 i~gGtY~Vne~Ml~dL~~~~~g~HaSNLG---a~iA~~lA~~~gipAfIvDPv~V 132 (221) T 1saz_A 81 IPGGVYLVDGLXIKTLKSGKNGEHASNLG---AIIAHRFSSETGVPAYVVDPVVV 132 (221) T ss_dssp BCSSEEECCHHHHHHHHHTTTCCCTTHHH---HHHHHHHHHHHCCCEEEESCTTB T ss_pred CCCCEEEECHHHHHHHHHCCCCCCCCCHH---HHHHHHHHCCCCCCEEEECCCCC T ss_conf 06971876799999987467877701489---99999985789997588688131 No 15 >>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} (A:1-173,A:394-415) Probab=93.73 E-value=0.27 Score=28.50 Aligned_cols=70 Identities=11% Similarity=-0.058 Sum_probs=42.5 Q ss_pred CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCC--------------CCCHHHHHHHHHHHHHHHHHCCCC- Q ss_conf 99880699997888720589999719968999833687388--------------999888999999989998622796- Q gi|254780554|r 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV--------------RQSLAFRLCQLYEGLTDVIKNWRP- 65 (169) Q Consensus 1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~--------------~~~~~~Rl~~I~~~l~~ii~~~~P- 65 (169) |...|+||-|-||++++-|++++.++. +.+..|.++-.. ....+.|-..+..-++.+.+...+ T Consensus 14 ~~~~~~ILvIN~GSSSlK~alf~~~~~--~~l~~g~ie~i~~~~~~~~~~~~~~~~~~~~~~~~ai~~il~~l~~~~~~~ 91 (195) T 2e1z_A 14 SNEFPVVLVINCGSSSIKFSVLDVATC--DVLMAGIADGMNTENAFLSINGDKPINLAHSNYEDALKAIAFELEKRDLTD 91 (195) T ss_dssp ---CCEEEEEEECSSEEEEEEEETTTC--CEEEEEEEESTTSSSCEEEETTSCCEECCSCCHHHHHHHHHHHHHTTTCGG T ss_pred CCCCCEEEEECCCCHHHEEEEEECCCC--CEEEEECEEECCCCCCEEEEECCEEEECCCCCHHHHHHHHHHHHHHCCCCC T ss_conf 689846999927826264388988998--789870110038988669980780263153389999999999998468612 Q ss_pred --CEEEEEH Q ss_conf --2778850 Q gi|254780554|r 66 --EEAAVEQ 72 (169) Q Consensus 66 --d~vaiE~ 72 (169) +.|+--- T Consensus 92 ~i~aVghRv 100 (195) T 2e1z_A 92 SVALIGHRI 100 (195) T ss_dssp GEEEEEEEE T ss_pred CCEEEEECC T ss_conf 440897168 No 16 >>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus VF5} (A:1-136,A:299-315) Probab=93.61 E-value=0.58 Score=26.46 Aligned_cols=99 Identities=16% Similarity=0.220 Sum_probs=68.6 Q ss_pred CCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCH----------HHHHHHHHHHHHHHHHCCCCCE-EEE Q ss_conf 98806999978887205899997199689998336873889998----------8899999998999862279627-788 Q gi|254780554|r 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSL----------AFRLCQLYEGLTDVIKNWRPEE-AAV 70 (169) Q Consensus 2 ~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~----------~~Rl~~I~~~l~~ii~~~~Pd~-vai 70 (169) .+.|++=.||-|++.+=..|.|..++.+..++.....+.-.... -+|.......+.+++++|+++. .++ T Consensus 9 ~~~~~~AvIDiGSNsirL~I~e~~~~~~~~i~~~k~~vrLg~~~~~~g~i~~e~i~r~~~al~~f~~~~~~~~v~~i~~v 88 (153) T 1t6c_A 9 KPIMRVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKAV 88 (153) T ss_dssp -CCEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCSEEEEE T ss_pred CCCCEEEEEEECCCEEEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 88668999997544089999970699741142224787502465325981999999999999999999875054559973 Q ss_pred EHHHHC--CCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHH Q ss_conf 503320--241247889999999999998601617752606 Q gi|254780554|r 71 EQVFVN--KDAVATLKLGQARAIAILSPALARIPVSEYAPN 109 (169) Q Consensus 71 E~~F~~--~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~ 109 (169) =.-.+. +|..-.+. ..-.+-|+++.-++.. T Consensus 89 ATsA~R~A~N~~e~l~---------~I~~~tGi~i~iIsge 120 (153) T 1t6c_A 89 ATEAIRRAKNAEEFLE---------RVKREVGLVVEVITPE 120 (153) T ss_dssp ECHHHHTSTTHHHHHH---------HHHHHTCCCEEECCHH T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHCCCEEEEEHH T ss_conf 1699997341599999---------9999869952884199 No 17 >>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, structural genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum atcc 12472} (A:1-121,A:280-305) Probab=93.17 E-value=0.35 Score=27.79 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=45.7 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCC-CCHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 06999978887205899997199689998336873889-9988899999998999862279627 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR-QSLAFRLCQLYEGLTDVIKNWRPEE 67 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~-~~~~~Rl~~I~~~l~~ii~~~~Pd~ 67 (169) --+||||-|.+++=++++|.+++ ++......+... .+..+-+..|.+.+.+++++...+. T Consensus 11 ~y~LGIDiGgT~ik~~l~D~~G~---ii~~~~~~~~~~~~~~e~~~~~i~~~i~~ll~~~~i~~ 71 (147) T 1zc6_A 11 RYLIGVDGGGTGTRIRLHASDGT---PLAXAEGGASALSQGIAKSWQAVLSTLEAAFQQAGLPA 71 (147) T ss_dssp CEEEEEEECSSCEEEEEEETTCC---EEEEEEESCCCGGGCHHHHHHHHHHHHHHHHHHTTCCC T ss_pred CEEEEEECCCCEEEEEEECCCCC---EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 78999992822189999989998---99999956998566999999999999999999849996 No 18 >>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Agrobacterium tumefaciens str} (A:1-121) Probab=92.99 E-value=0.67 Score=26.08 Aligned_cols=69 Identities=7% Similarity=0.027 Sum_probs=54.7 Q ss_pred CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCH----------HHHHHHHHHHHHHHHHCCCCCEEE Q ss_conf 998806999978887205899997199689998336873889998----------889999999899986227962778 Q gi|254780554|r 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSL----------AFRLCQLYEGLTDVIKNWRPEEAA 69 (169) Q Consensus 1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~----------~~Rl~~I~~~l~~ii~~~~Pd~va 69 (169) |.++|++=.||-|++.+=..|.|..++.++.++.....+.-.... -+|+......+.++++.|.++.+. T Consensus 11 ~~~~~~~avIDIGSNsirl~I~e~~~~~~~~i~~~k~~vrLg~~~~~~g~l~~e~i~~~~~~l~~f~~~~~~~~v~~i~ 89 (121) T 3hi0_A 11 LTGLAPVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRXHEEGVTRALXALRRFHVLSEQAQAQKLY 89 (121) T ss_dssp CTTCCCEEEEEECSSEEEEEEESCSSSSCCEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCSEEE T ss_pred CCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 5799948999965430899999737998506888889961656764259919999999999999999999867997799 No 19 >>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* (A:384-592) Probab=92.89 E-value=0.75 Score=25.80 Aligned_cols=64 Identities=14% Similarity=0.007 Sum_probs=44.7 Q ss_pred EEEEECCCC----CEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHC Q ss_conf 699997888----72058999971996899983368738899988899999998999862279627788503320 Q gi|254780554|r 6 RIIGIDPGL----RRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76 (169) Q Consensus 6 rILGIDPGl----~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~ 76 (169) .++|+||+. ..|...|++..++...++.....+...-.. +.+.+.+++.+|+|..+.||.-.++ T Consensus 38 ~~~~~D~A~g~~~D~ta~~v~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~i~iE~~~~G 105 (209) T 3cpe_A 38 YIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISHLI-------LPDIVMRYLVEYNECPVYIELNSTG 105 (209) T ss_dssp EEEEEECCSSBTTBCEEEEEEECSSSSEEEEEEEEESSSCTTT-------HHHHHHHHHHHTTSCCEEEEESHHH T ss_pred EEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCHHH-------HHHHHHHHHHHCCCCEEEEEECCCH T ss_conf 5888522555778742699932578760899998558888688-------9999999999728838999989859 No 20 >>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis V583} (A:1-131,A:308-326) Probab=92.87 E-value=0.36 Score=27.76 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=48.7 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 06999978887205899997199689998336873889998889999999899986227962 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd 66 (169) ..+||||-|.+.+-++++|..+. .+....+.+....+..+-+..+.+.+++++.++..+ T Consensus 6 ~~~iGIdig~t~i~~~l~Dl~g~---ii~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ 64 (150) T 2qm1_A 6 KKIIGIDLGGTTIKFAILTTDGV---VQQKWSIETNILEDGKHIVPSIIESIRHRIDLYNXK 64 (150) T ss_dssp CEEEEEEECSSEEEEEEEETTCC---EEEEEEEECCCTTTTTTHHHHHHHHHHHHHHHTTCC T ss_pred CEEEEEEECCCEEEEEEECCCCC---EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 86999998723389999939998---999999847988898999999999999999972455 No 21 >>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} (A:86-211,A:358-380) Probab=92.85 E-value=0.31 Score=28.18 Aligned_cols=57 Identities=9% Similarity=0.089 Sum_probs=48.5 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 069999788872058999971996899983368738899988899999998999862279 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~ 64 (169) ..+||||-|.+++-.+++|..++ ++....+.++...+..+-+..+.+.++++++++. T Consensus 2 ~y~lGIdiG~t~i~~~l~d~~G~---il~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 58 (149) T 2hoe_A 2 AYVLGIEVTRDEIAACLIDASXN---ILAHEAHPLPSQSDREETLNVXYRIIDRAKDXXE 58 (149) T ss_dssp CEEEEEEECSSEEEEEEEETTCC---EEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHH T ss_pred CCEEEEEECCCEEEEEEEECCCC---EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 71257899898899999928998---9987643277778989999999999999999865 No 22 >>3gbt_A Gluconate kinase; LBA0354, FGGY kinase family, carbohydrate metabolic process, transferase, structural genomics, PSI-2; 2.40A {Lactobacillus acidophilus ncfm} (A:1-237) Probab=92.75 E-value=0.79 Score=25.65 Aligned_cols=65 Identities=23% Similarity=0.214 Sum_probs=40.2 Q ss_pred CCCE-EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCC--------CHHHHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 8806-9999788872058999971996899983368738899--------988899999998999862279627788 Q gi|254780554|r 3 KSIR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--------SLAFRLCQLYEGLTDVIKNWRPEEAAV 70 (169) Q Consensus 3 ~~Mr-ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~--------~~~~Rl~~I~~~l~~ii~~~~Pd~vai 70 (169) .+|+ +||||-|++++=.+++|.+++.. .......+... +..+=...+.+.+.++.+....+..+| T Consensus 1 ~Sm~~~lgID~GTts~ka~l~d~~g~~~---~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~I~~I 74 (237) T 3gbt_A 1 XSLKYIIGXDVGTTATKGVLYDINGKAV---ASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQKIDGKIAAI 74 (237) T ss_dssp -CCEEEEEEEECSSEEEEEEEETTSCEE---EEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTCSSEEEEE T ss_pred CCCCEEEEEECCCCCEEEEEEECCCCEE---EEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCEEE T ss_conf 9977899997511031000683889899---9999847831699997147999999999999999996388871599 No 23 >>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuclease-H fold, sugar kinase, glucose, conformational change; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* (A:1-105,A:275-299) Probab=92.67 E-value=0.36 Score=27.74 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=44.9 Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC---CCCEEEEEHHHH Q ss_conf 806999978887205899997199689998336873889998889999999899986227---962778850332 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW---RPEEAAVEQVFV 75 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~---~Pd~vaiE~~F~ 75 (169) +|.+||||-|.+++-++++|.+++ .+....+. .....++-+..+.+.+.+.+++. .++.+.+--+-+ T Consensus 1 M~~~iGIDiG~T~ira~l~D~~G~---ii~~~~~~--t~~~~e~~~~~i~~~i~~~i~~~~~~~~~~~gI~~~gi 70 (130) T 2e2o_A 1 MMIIVGVDAGGTKTKAVAYDCEGN---FIGEGSSG--PGNYHNVGLTRAIENIKEAVKIAAKGEADVVGMGVAGL 70 (130) T ss_dssp CCCEEEEEECSSCEEEEEECTTSC---EEEEEEES--CCCHHHHCHHHHHHHHHHHHHHHHTSCCSEEEEEETTC T ss_pred CCEEEEEEECHHHEEEEEECCCCC---EEEEEEEC--CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC T ss_conf 909999996500279999979998---99999957--89975104999999999999974589875578832456 No 24 >>3khy_A Propionate kinase; csgid, IDP01739, ATP-binding, nucleotide-binding, transferase, structural genomics; 1.98A {Francisella tularensis subsp} (A:1-158,A:371-384) Probab=92.24 E-value=0.85 Score=25.46 Aligned_cols=67 Identities=10% Similarity=0.013 Sum_probs=49.1 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEE-------------------CCCCCCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 699997888720589999719968999833687-------------------3889998889999999899986227962 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIV-------------------SCVRQSLAFRLCQLYEGLTDVIKNWRPE 66 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~-------------------t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd 66 (169) |||-|-||++++=|++.|..+.+ .+..|.+. ....+++..++..|.+.|.+-....+++ T Consensus 3 kILviN~GSSSlK~alf~~~~~~--~l~~g~ie~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~il~~L~~~~~~~~i~ 80 (172) T 3khy_A 3 EILVLNCGSSSVKFALINPHTSQ--SLVTGLAENIATKNCKVVFKAEHKIVKYLENGSYKDVFEXLKDFLVENKHLEKIV 80 (172) T ss_dssp EEEEEEECSSCEEEEEEETTTTE--EEEEEEEESTTSTTCEEEEESSSEEEEECTTCCHHHHHHHHHHHHHHTTCGGGEE T ss_pred EEEEEECCHHHHHHEEEECCCCC--EEEEEEEEECCCCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEE T ss_conf 39999387674714679789987--7889878651799846999548833553477899999999999986369855147 Q ss_pred EEEEEHHH Q ss_conf 77885033 Q gi|254780554|r 67 EAAVEQVF 74 (169) Q Consensus 67 ~vaiE~~F 74 (169) .|+-.-+. T Consensus 81 aVghRvVh 88 (172) T 3khy_A 81 AIGHRVVH 88 (172) T ss_dssp EEEEEESC T ss_pred EEECCCCC T ss_conf 88123567 No 25 >>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} (A:1-122,A:314-332) Probab=92.24 E-value=0.42 Score=27.35 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=40.8 Q ss_pred CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 9988069999788872058999971996899983368738899988899999998999862279627 Q gi|254780554|r 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67 (169) Q Consensus 1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~ 67 (169) |..++.+||||-|-+.+=++++|..++.+ .....+.++..+.+... +.+++++++.+. T Consensus 10 ~p~~~~~lgiDIGgT~i~~al~d~~g~~i--~~~~~~~t~~~~~~~~~-------i~~ii~~~~~~i 67 (141) T 1sz2_A 10 HGSTKYALVGDVGGTNARLALCDIASGEI--SQAKTYSGLDYPSLEAV-------IRVYLEEHKVEV 67 (141) T ss_dssp ----CEEEEEEEETTEEEEEEEETTTCCE--EEEEEEEGGGCSCHHHH-------HHHHHHHSCCCC T ss_pred CCCCCEEEEEEECCHHHHHEEEECCCCEE--EEEEEECCCCHHHHHHH-------HHHHHHHCCCCC T ss_conf 78433899999780543254698999989--68888789987689999-------999998669987 No 26 >>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, ribonuclease H fold, sugar kinase/HSP70/actin superfamily, domain rotation; HET: NAG NDG; 1.9A {Homo sapiens} (A:1-119,A:314-347) Probab=92.20 E-value=0.33 Score=27.95 Aligned_cols=58 Identities=12% Similarity=0.045 Sum_probs=42.0 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCC--CCCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 699997888720589999719968999833687388--9998889999999899986227962 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV--RQSLAFRLCQLYEGLTDVIKNWRPE 66 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~--~~~~~~Rl~~I~~~l~~ii~~~~Pd 66 (169) -+||||-|.+++=++++|.+++ .+....+.++. ..+..+=+..|.+.+.+++.+..++ T Consensus 7 ~vLGIDiGgT~ir~~lvD~~G~---ii~~~~~~~~~~~~~~~e~~~~~i~~~i~~~l~~~~~~ 66 (153) T 2ch5_A 7 IYGGVEGGGTRSEVLLVSEDGK---ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVD 66 (153) T ss_dssp EEEEEEECTTCEEEEEEETTSC---EEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHHHTCC T ss_pred EEEEEECCCCCEEEEEECCCCC---EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC T ss_conf 8999990611028899959999---99999936889665899999999999999999974999 No 27 >>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} (A:1-119,A:275-289) Probab=92.15 E-value=0.43 Score=27.27 Aligned_cols=58 Identities=12% Similarity=0.231 Sum_probs=41.7 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE Q ss_conf 06999978887205899997199689998336873889998889999999899986227962778 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~va 69 (169) |.++|||-|.+++-+++.|..++ .+....+.++...... .+.+.+.++++++..+..+ T Consensus 1 myvigidig~~~i~~~l~dl~g~---ii~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~i~g 58 (134) T 2aa4_A 1 MTTLAIDIGGTKLAAALIGADGQ---IRDRRELPTPASQTPE----ALRDALSALVSPLQAHAQR 58 (134) T ss_dssp CCEEEEEECSSEEEEEEECTTCC---EEEEEEEECCSSCCHH----HHHHHHHHHHTTTGGGCSE T ss_pred CCEEEEEECHHHEEEEEECCCCC---EEEEEEEECCCCCCHH----HHHHHHHHHHHHHHHHCCC T ss_conf 97999998810489999979997---9999999789888999----9999999999998764374 No 28 >>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} (A:1-95,A:239-270) Probab=91.71 E-value=0.02 Score=35.54 Aligned_cols=81 Identities=16% Similarity=0.060 Sum_probs=48.9 Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC-----CCEEEEEHH----- Q ss_conf 8069999788872058999971996899983368738899988899999998999862279-----627788503----- Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR-----PEEAAVEQV----- 73 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~-----Pd~vaiE~~----- 73 (169) +|-+||||-|++++=.+++|.+| +++....++|..... .+.+.+.+++++.. +..|++=.+ T Consensus 2 ~~y~LGIDiGtTsvKavl~D~dG---~iia~~~~~t~~~~~------~i~~~i~~~L~~~~~~~~~I~gIgvtg~g~~~v 72 (127) T 1hux_A 2 SIYTLGIDVGSTASKCIILKDGK---EIVAKSLVAVGTGTS------GPARSISEVLENAHMKKEDMAFTLATGYGRNSL 72 (127) T ss_dssp CCEEEEEEECSSEEEEEEEETTT---EEEEEEEEECCSSCC------HHHHHHHHHHHHHTCCGGGCSEEEEESTTTTTT T ss_pred CEEEEEECCCCCCEEEEEECCCC---EEEEEEEECCCCCCC------HHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHH T ss_conf 53898531477411379983530---232256622699863------389999999986258863555785135365566 Q ss_pred HHCCCHHHHHHHHHHHHHHH Q ss_conf 32024124788999999999 Q gi|254780554|r 74 FVNKDAVATLKLGQARAIAI 93 (169) Q Consensus 74 F~~~n~~t~~~lg~arGvi~ 93 (169) .+.++....+.....||+.. T Consensus 73 ~~d~~g~~~~~w~d~Rga~~ 92 (127) T 1hux_A 73 EGIADKQMSELSCHAMGASF 92 (127) T ss_dssp TTTCSEEECHHHHHHHHHHH T ss_pred HHHHHHHHHEEECCCCCCEE T ss_conf 66644322202211044304 No 29 >>3eo3_A Bifunctional UDP-N-acetylglucosamine 2- epimerase/N-acetylmannosamine kinase; non-protein kinase, sialic acid biosynthesis; 2.84A {Homo sapiens} (A:1-144,A:315-333) Probab=91.05 E-value=1.1 Score=24.80 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=41.7 Q ss_pred CCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9880699997888720589999719968999833687388999888999999989998622796 Q gi|254780554|r 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65 (169) Q Consensus 2 ~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~P 65 (169) .-++.+||||-|.+++-.+++|..++. +....+.++ .+.++-...+.+.+.++++++.. T Consensus 17 ~~~~~vlgIdiG~t~i~~~l~D~~G~i---ia~~~~~~~--~~~~~~~~~l~~~i~~~~~~~~~ 75 (163) T 3eo3_A 17 QGTLSALAVDLGGTNLRVAIVSMKGEI---VKKYTQFNP--KTYEERINLILQMCVEAAAEAVK 75 (163) T ss_dssp --CCEEEEEEECSSEEEEEEEETTSCE---EEEEEEECC--SSHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCEEEEEEEECCCEEEEEEECCCCCE---EEEEEECCC--CCHHHHHHHHHHHHHHHHHHHHC T ss_conf 887028999977111999999499979---999996899--98789999999999999998621 No 30 >>2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima} (A:1-164,A:386-403) Probab=90.37 E-value=0.99 Score=25.05 Aligned_cols=68 Identities=13% Similarity=0.188 Sum_probs=42.6 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEEC--------------------CCCCCHHHHHHHHHHHHHHHHHC-- Q ss_conf 06999978887205899997199689998336873--------------------88999888999999989998622-- Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS--------------------CVRQSLAFRLCQLYEGLTDVIKN-- 62 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t--------------------~~~~~~~~Rl~~I~~~l~~ii~~-- 62 (169) |+||-|.||++++=|++.+.++.+ .+..|.+.- ....+..+.+..|.+.|.+---. T Consensus 1 MkILviN~GSSSlK~alf~~~~~~--~l~~g~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~il~~L~~~~~~~~ 78 (182) T 2iir_A 1 MRVLVINSGSSSIKYQLIEMEGEK--VLCKGIAERIGIEGSRLVHRVGDEKHVIERELPDHEEALKLILNTLVDEKLGVI 78 (182) T ss_dssp CEEEEEEEETTEEEEEEEETTTTE--EEEEEEEECTTSTTCEEEEEETTEEEEEECCCCSHHHHHHHHHHHHHCTTTCSC T ss_pred CCEEEECCCHHHHEEEEEECCCCC--EEEEEEEEEECCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCC T ss_conf 919998677273632889679984--788888988459986389980883035403679999999999999985356744 Q ss_pred ---CCCCEEEEEHHH Q ss_conf ---796277885033 Q gi|254780554|r 63 ---WRPEEAAVEQVF 74 (169) Q Consensus 63 ---~~Pd~vaiE~~F 74 (169) -+++.|+---++ T Consensus 79 ~~~~~i~avghRvVh 93 (182) T 2iir_A 79 KDLKEIDAVGHRVVH 93 (182) T ss_dssp SCSTTCCEEEEEESC T ss_pred CCHHHHEEEEEECCC T ss_conf 784442057542246 No 31 >>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} (A:1-76,A:372-405,A:594-607) Probab=88.13 E-value=1.2 Score=24.60 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=49.6 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 699997888720589999719968999833687388999888999999989998622796 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~P 65 (169) .|.|||-|++++=..+.+.+++.++.+.+|..++.--+..-.-+....+.+++.+++-.- T Consensus 3 iivgIDIGSSkv~avIaev~dg~i~VLG~G~~~S~GiKG~I~dIe~a~~aI~~AI~~AE~ 62 (124) T 1nbw_A 3 LIAGIDIGNATTEVALASDYPQARAFVASGIVATTGMKGTRDNIAGTLAALEQALAKTPW 62 (124) T ss_dssp EEEEEEECSSEEEEEEEECBTTBCCCCEEEEEECCSSTTSGGGHHHHHHHHHHHHTTSSC T ss_pred EEEEEECCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC T ss_conf 799996077631589999648953796225456677567477899999999999997199 No 32 >>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, actin) superfamily; 1.90A {Escherichia coli} (A:1-117) Probab=88.09 E-value=2.1 Score=23.06 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=51.3 Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC------CCCCH----HHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 88069999788872058999971996899983368738------89998----88999999989998622796277 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC------VRQSL----AFRLCQLYEGLTDVIKNWRPEEA 68 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~------~~~~~----~~Rl~~I~~~l~~ii~~~~Pd~v 68 (169) +.+++=.||-|++.+=.-|.|..++.++.++.....+. ....+ -+|+...-..+.++++.|+++.+ T Consensus 9 ~~~~~avIDiGSNsirL~I~e~~~~~~~~i~~~k~~~~Lg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~i 84 (117) T 1u6z_A 9 RPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPASV 84 (117) T ss_dssp ---CEEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTCCBCHHHHHHHHHHHHHHHHHTTTCCGGGE T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCCCHHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 9887999997554079999983599720200236896243565546992999999999999999999975799889 No 33 >>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, structural genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* (A:1-85,A:223-246) Probab=87.72 E-value=2.2 Score=22.92 Aligned_cols=58 Identities=14% Similarity=0.049 Sum_probs=40.3 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCC--------CCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 6999978887205899997199689998336873889--------998889999999899986227962 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--------QSLAFRLCQLYEGLTDVIKNWRPE 66 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~--------~~~~~Rl~~I~~~l~~ii~~~~Pd 66 (169) -+||||-|++++=.+++|.+++. +......++.. .+..+=...+.+.+++++.+...+ T Consensus 7 yilgIDiGTTsiKa~l~D~~G~~---ia~~~~~~~~~~~~~g~~Eqdp~~~w~~i~~~i~~ll~~~~i~ 72 (109) T 3g25_A 7 YILSIDQGTTSSRAILFNQKGEI---AGVAQREFKQYFPQSGWVEHDANEIWTSVLAVXTEVINENDVR 72 (109) T ss_dssp EEEEEEECSSEEEEEEECTTSCE---EEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCC T ss_pred EEEEEECCCCCCHHHEECCCCCE---EEEEEEECCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCC T ss_conf 78999840204011068499989---9999970671248998078899999999999999999875999 No 34 >>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} (A:106-216) Probab=87.50 E-value=1.9 Score=23.33 Aligned_cols=57 Identities=9% Similarity=0.141 Sum_probs=44.6 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 6999978887205899997199689998336873889998889999999899986227962 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd 66 (169) .++|||-|.+.+=.+++|..++ .+....+.++. .+..+-+..+.+.+.++++++..+ T Consensus 4 ~~igidig~~~i~~~l~d~~g~---ii~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~ 60 (111) T 1z05_A 4 QFLSMRLGRGYLTIALHELGGE---VLIDTKIDIHE-IDQDDVLARLLFEIEEFFQTYAAQ 60 (111) T ss_dssp EEEEEEEETTEEEEEEEETTSC---EEEEEEEECCC-CBHHHHHHHHHHHHHHHHHHTTTT T ss_pred EEEEEEECCCEEEEEEECCCCC---EEEEEEECCCC-CCHHHHHHHHHHHHHHHHHHCCCC T ss_conf 9999998999899999969997---99999613457-987899999999999999970766 No 35 >>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleotide-binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O (X:1-84,X:222-244) Probab=87.23 E-value=2.3 Score=22.74 Aligned_cols=63 Identities=13% Similarity=0.030 Sum_probs=43.0 Q ss_pred CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCC--------CCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 998806999978887205899997199689998336873889--------998889999999899986227962 Q gi|254780554|r 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--------QSLAFRLCQLYEGLTDVIKNWRPE 66 (169) Q Consensus 1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~--------~~~~~Rl~~I~~~l~~ii~~~~Pd 66 (169) |...--+||||-|++++=.+++|.+++.. .......+.. .+..+=...+.+.+.+++++...+ T Consensus 1 Mm~~~~iLgIDiGTTs~Ka~lvd~~G~iv---a~~~~~~~~~~~~~g~~eqdpe~iw~~i~~~i~~ll~~a~i~ 71 (107) T 3h3n_X 1 MAEKNYVMAIDQGTTSSRAIIFDRNGKKI---GSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIESGIR 71 (107) T ss_dssp -CCCCEEEEEEECSSEEEEEEEETTSCEE---EEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCC T ss_pred CCCCCEEEEEECCCCCHHHHEECCCCCEE---EEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99784899998211120231571899999---999983671658998289899999999999999999984998 No 36 >>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} (A:83-194) Probab=86.98 E-value=1.3 Score=24.24 Aligned_cols=57 Identities=5% Similarity=0.035 Sum_probs=42.7 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 6999978887205899997199689998336873889998889999999899986227962 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd 66 (169) -+||||-|.+++=.+++|..+. .+....+.++... ..+-+..+.+.++++++++..+ T Consensus 4 ~~igidig~t~i~~~l~d~~g~---ii~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~~~~ 60 (112) T 1z6r_A 4 HYLSLRISRGEIFLALRDLSSK---LVVEESQELALKD-DLPLLDRIISHIDQFFIRHQKK 60 (112) T ss_dssp EEEEEEEETTEEEEEEEETTCC---EEEEEEEECCSSC-SSCHHHHHHHHHHHHHHHTGGG T ss_pred EEEEEEECCCEEEEEEECCCCC---EEEEEEEECCCCC-HHHHHHHHHHHHHHHHHHCCCC T ss_conf 8999998898899999879998---8999998425688-0799999999999999972554 No 37 >>3djc_A Type III pantothenate kinase; structural genomics, putative transferase, PSI-2, protein structure initiative; 2.40A {Legionella pneumophila subsp} (A:1-123,A:243-266) Probab=86.65 E-value=0.85 Score=25.45 Aligned_cols=62 Identities=19% Similarity=0.072 Sum_probs=40.4 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHC Q ss_conf 69999788872058999971996899983368738899988899999998999862279627788503320 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVN 76 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~ 76 (169) .+|+||-|-+++=||+++.. .++....+.++.... ..+...+.++++.+..+...++.+.++ T Consensus 3 m~L~IDIGNT~iK~al~~~~----~~~~~~~~~t~~~~~-----~e~~~~l~~l~~~~~~~~~~v~~v~i~ 64 (147) T 3djc_A 3 LILCIDVGNSHIYGGVFDGD----EIKLRFRHTSKVSTS-----DELGIFLKSVLRENNCSPETIRKIAIC 64 (147) T ss_dssp CEEEEEECSSEEEEEEEETT----EEEEEEEEECSCCCH-----HHHHHHHHHHHHTTTCCGGGCCEEEEE T ss_pred EEEEEEECCCCEEEEEEECC----EEEEEEEECCCCCCH-----HHHHHHHHHHHHHCCCCCCCCCEEEEE T ss_conf 79999966761089999999----999999846888887-----899999999999759987886789999 No 38 >>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A (A:1-231) Probab=85.52 E-value=0.99 Score=25.05 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=38.8 Q ss_pred EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCC--------CHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 9999788872058999971996899983368738899--------988899999998999862279627 Q gi|254780554|r 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--------SLAFRLCQLYEGLTDVIKNWRPEE 67 (169) Q Consensus 7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~--------~~~~Rl~~I~~~l~~ii~~~~Pd~ 67 (169) +||||-|++++=-+++|.+++- +.......+... +..+=...+.+.+.+++..+.|+. T Consensus 2 ~lgiDiGTts~Ka~l~d~~g~v---v~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~ 67 (231) T 2itm_A 2 YIGIDLGTSGVKVILLNEQGEV---VAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSLQD 67 (231) T ss_dssp EEEEEECSSEEEEEEECTTSCE---EEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHSCCTT T ss_pred EEEEEECCCCEEEEEEECCCCE---EEEEEEECCEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 8999962225221278088989---99999844514589983898999999999999999997669557 No 39 >>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} (A:1-141,A:327-343) Probab=83.84 E-value=3.4 Score=21.73 Aligned_cols=100 Identities=15% Similarity=0.081 Sum_probs=65.4 Q ss_pred CCCCEEEEECCCCCEEEEEEEEEECC-EEEEEEEEEEECCCCCCH----------HHHHHHHHHHHHHHHHCCCCCEE-E Q ss_conf 98806999978887205899997199-689998336873889998----------88999999989998622796277-8 Q gi|254780554|r 2 RKSIRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSL----------AFRLCQLYEGLTDVIKNWRPEEA-A 69 (169) Q Consensus 2 ~~~MrILGIDPGl~~tG~avie~~~~-~~~li~~g~I~t~~~~~~----------~~Rl~~I~~~l~~ii~~~~Pd~v-a 69 (169) ++.|++=.||-|++..=+.|.|..++ .++.++.....+.-.... -+|.......+.+++++|+++.+ + T Consensus 13 ~~~~~~avIDIGSNSirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~l~~e~i~r~~~al~~f~~~~~~~~v~~i~~ 92 (158) T 3cer_A 13 KESVTVAGIDCGTNSIRLKIARVDADGXHEVVPRILRVIRLGQDVDKTHRFADEALERAYVAAREFAGVIAEHPIDGLRF 92 (158) T ss_dssp -CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEEECCCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHTTSCCSEEEE T ss_pred CCCCEEEEEEECCCEEEEEEEEECCCCCEEEEEHEEEEEECCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 56887999982565079999998799970350012788766677021399199999999999999999987556421357 Q ss_pred EEHHHHC--CCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHH Q ss_conf 8503320--2412478899999999999986016177526067 Q gi|254780554|r 70 VEQVFVN--KDAVATLKLGQARAIAILSPALARIPVSEYAPNT 110 (169) Q Consensus 70 iE~~F~~--~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~~ 110 (169) +=.-.+. .|..-. +.+ .-.+.|+++.-.+..+ T Consensus 93 vATsA~R~A~N~~~~--l~~-------I~~~tGi~i~ILsg~e 126 (158) T 3cer_A 93 VATSATRDAENREEF--EDE-------IERILGVRPEVIPGTE 126 (158) T ss_dssp EECHHHHHCTTHHHH--HHH-------HHHHHSSCCEECCHHH T ss_pred HHHHHHHHCCCCHHH--HHH-------HHHHHCCCCEEEEHHH T ss_conf 888999866354379--999-------9998556706730999 No 40 >>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} (A:1-241) Probab=83.16 E-value=2 Score=23.16 Aligned_cols=60 Identities=7% Similarity=0.042 Sum_probs=37.1 Q ss_pred CE-EEEECCCCCEEEEEEEEEECCEEEEE--EEEEEECCCC---CCHHHHHHHHHHHHHHHHHCCC Q ss_conf 06-99997888720589999719968999--8336873889---9988899999998999862279 Q gi|254780554|r 5 IR-IIGIDPGLRRTGWGIVDVAGDNLCFV--SSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNWR 64 (169) Q Consensus 5 Mr-ILGIDPGl~~tG~avie~~~~~~~li--~~g~I~t~~~---~~~~~Rl~~I~~~l~~ii~~~~ 64 (169) |. +||||-|++++=-+++|.+++..... .+......+. .+..+=...+.+.+.+++.++. T Consensus 1 M~~~lgiDiGTts~Ka~l~d~~g~~i~~~~~~~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~ 66 (241) T 2dpn_A 1 MAFLLALDQGTTSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRRAG 66 (241) T ss_dssp --CEEEEEECSSEEEEEEECTTSCEEEEEEEECCEECSSTTCCEECHHHHHHHHHHHHHHHHHHTT T ss_pred CCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCEECCCCCCEEECHHHHHHHHHHHHHHHHHHCC T ss_conf 968999984111311017808898999999746704589982899999999999999999999749 No 41 >>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} (A:1-120,A:236-249) Probab=82.73 E-value=3.6 Score=21.60 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=38.0 Q ss_pred EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC--CCCEEEEEH Q ss_conf 999978887205899997199689998336873889998889999999899986227--962778850 Q gi|254780554|r 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW--RPEEAAVEQ 72 (169) Q Consensus 7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~--~Pd~vaiE~ 72 (169) +|.||-|-+++=||+++... ++..+.+.|+...+..+ +...+.++.... +|+.+++=. T Consensus 5 ~L~IDiGNT~iK~a~~~~~~----~~~~~~~~t~~~~~~~e----l~~~l~~~~~~~~~~i~~v~isS 64 (134) T 3bex_A 5 YLLVDVGNTHSVFSITEDGK----TFRRWRLSTGVFQTEDE----LFSHLHPLLGDAMREIKGIGVAS 64 (134) T ss_dssp EEEEEECSSEEEEEEESSSS----SCEEEEEECCTTCCHHH----HHHHHHHHHGGGGGGEEEEEEEE T ss_pred EEEEEECCCCEEEEEEECCE----EEEEEEECCCCCCCHHH----HHHHHHHHHHCCHHHCCEEEECC T ss_conf 99999277712899998999----99999953787678899----99999998501044333353312 No 42 >>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12} (A:1-131,A:286-310) Probab=82.56 E-value=1.4 Score=24.11 Aligned_cols=63 Identities=8% Similarity=0.133 Sum_probs=46.6 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 0699997888720589999719968999833687388999888999999989998622796277885 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVE 71 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE 71 (169) --++|||-|-+.+=++++|..++ ++....+.++... ....+..+.+.++++++++..+...|= T Consensus 7 ~~~iGVdig~t~i~~~l~dl~G~---il~~~~~~~~~~~-~~~~l~~i~~~i~~~~~~~~~~i~gIg 69 (156) T 3htv_A 7 NVVAGVDXGATHIRFCLRTAEGE---TLHCEKKRTAEVI-APGLVSGIGEXIDEQLRRFNARCHGLV 69 (156) T ss_dssp EEEEEEEECSSEEEEEEEETTSC---EEEEEEEEHHHHH-TTCHHHHHHHHHHHHHHHHTEEEEEEE T ss_pred CEEEEEEECCCEEEEEEECCCCC---EEEEEEECCCCCC-HHHHHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 89999997765699999929998---9999997088878-899999999999999986599831799 No 43 >>1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} (A:1-164,A:384-408) Probab=81.67 E-value=3 Score=22.04 Aligned_cols=32 Identities=13% Similarity=0.395 Sum_probs=25.2 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEE Q ss_conf 0699997888720589999719968999833687 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIV 38 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~ 38 (169) ||||-|-||++++=|+++|..+.+ .+..|.+. T Consensus 1 MkILvIN~GSSSlKfalfd~~~~~--~l~~g~i~ 32 (189) T 1g99_A 1 MKVLVINAGSSSLKYQLIDMTNES--ALAVGLCE 32 (189) T ss_dssp CEEEEEEECSSCEEEEEEETTTTE--EEEEEEEE T ss_pred CEEEEECCCHHHHEEEEEECCCCC--EEEEEEEE T ss_conf 959998688174630789779985--78886776 No 44 >>3lm2_A Putative kinase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, transferase; HET: MSE; 1.70A {Agrobacterium tumefaciens} (A:1-99) Probab=80.35 E-value=3.5 Score=21.66 Aligned_cols=58 Identities=14% Similarity=0.077 Sum_probs=42.9 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHH Q ss_conf 699997888720589999719968999833687388999888999999989998622796277885033 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVF 74 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F 74 (169) .+||||-|-+++=++++|..++- .+.++...+. .++.+.+.+.+++.+++.|+|--+- T Consensus 7 ~vlgiDiGgt~i~~~v~d~~g~i-------~~~t~~~~~~----~~~~~~i~~~i~~~~~~~Igig~pG 64 (99) T 3lm2_A 7 TVLAIDIGGSHVKIGLSTDGEER-------KVESGKTXTG----PEXVAAVTAXAKDXTYDVIAXGYPG 64 (99) T ss_dssp CEEEEEECSSEEEEEETTTCCEE-------EEECCTTCCH----HHHHHHHHHHTTTCCCSEEEEEESS T ss_pred EEEEEEECCCEEEEEEEECCCCE-------EEEECCCCCH----HHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 89999978855999999699879-------9970799997----9999999999974799839999576 No 45 >>2gup_A ROK family protein; sugar kinase, APC80695, sucrose, structural genomics, PSI, protein structure initiative; HET: SUC; 2.01A {Streptococcus pneumoniae TIGR4} (A:1-114,A:273-292) Probab=79.80 E-value=1.1 Score=24.68 Aligned_cols=62 Identities=16% Similarity=0.092 Sum_probs=46.1 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHH Q ss_conf 06999978887205899997199689998336873889998889999999899986227962778850332 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFV 75 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~ 75 (169) -.++|||-|-+++-++++|..+. .+....+.+ +.....+.+.+.++++++++..+++=-+-. T Consensus 4 ~~~igidIg~~~i~~~lvd~~g~---il~~~~~~~------~~~~~~i~~~i~~~~~~~~i~gIgia~pG~ 65 (134) T 2gup_A 4 XTIATIDIGGTGIKFASLTPDGK---ILDKTSIST------PENLEDLLAWLDQRLSEQDYSGIAXSVPGA 65 (134) T ss_dssp CCEEEEEEETTEEEEEEECTTCC---EEEEEEECC------CSSHHHHHHHHHHHHTTSCCSEEEEEESSE T ss_pred CEEEEEEECCHHEEEEEEECCCC---EEEEEEECC------CCCHHHHHHHHHHHHHHCCCCEEEEEEECC T ss_conf 89999998700379999908996---999999718------876999999999986544675799854042 No 46 >>1e4f_T Cell division protein FTSA; bacterial cell division, actin family; 1.9A {Thermotoga maritima} (T:1-86,T:168-189) Probab=79.43 E-value=4.9 Score=20.76 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=34.3 Q ss_pred CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCC Q ss_conf 99880699997888720589999719968999833687388 Q gi|254780554|r 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV 41 (169) Q Consensus 1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~ 41 (169) |++.=-+.|||-|++..=.-+.+..+++++++.+|...+.. T Consensus 4 M~k~~iiv~LDIGSskVk~iv~~~~~~~i~Ilg~g~~~s~G 44 (108) T 1e4f_T 4 LSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRG 44 (108) T ss_dssp ---CEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCS T ss_pred CCCCCEEEEEECCCCCEEEEEEEEECCEEEEEEEEEECCCC T ss_conf 88898299999860068999999979999999988876521 No 47 >>3hz6_A Xylulokinase; xylulose, structural genomic, manolate, transferase, structural genomics, PSI-2, protein structure initiative; HET: ADP XUL; 1.65A {Chromobacterium violaceum} (A:1-241) Probab=79.41 E-value=2.6 Score=22.41 Aligned_cols=65 Identities=12% Similarity=-0.023 Sum_probs=38.0 Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCC----C----CCHHHHHHHHHHHHHHHHHCCC--CCEEEE Q ss_conf 880699997888720589999719968999833687388----9----9988899999998999862279--627788 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV----R----QSLAFRLCQLYEGLTDVIKNWR--PEEAAV 70 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~----~----~~~~~Rl~~I~~~l~~ii~~~~--Pd~vai 70 (169) -+|-|||||-|++++=-+++|.+++.. ......++. . .+..+=...+.+.++++.+... ++.++| T Consensus 3 m~~~vlgiDiGTts~Ka~l~d~~g~vv---~~~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~l~~~~~~~~~i~aI 77 (241) T 3hz6_A 3 LAFYIATFDIGTTEVKAALADRDGGLH---FQRSIALETYGDGNGPVEQDAGDWYDAVQRIASSWWQSGVDARRVSAI 77 (241) T ss_dssp CCCEEEEEEECSSEEEEEEECTTSCEE---EEEEEECCCBSTTSSCCEECHHHHHHHHHHHHHHHHTTTCCGGGEEEE T ss_pred CCEEEEEEEECCCCEEHEEEECCCCEE---EEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCHHHEEEE T ss_conf 442799998500110120682889999---999983572568999756899999999999999999739996564799 No 48 >>1ig8_A Hexokinase PII, hexokinase B; mixed alpha beta, two domains, cleft, transferase; 2.20A {Saccharomyces cerevisiae} (A:75-211,A:459-486) Probab=73.44 E-value=6.8 Score=19.89 Aligned_cols=121 Identities=16% Similarity=0.072 Sum_probs=71.3 Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCC---C-CHHHHHHHHHHHHHHHHHCCCCCE------EEEEH Q ss_conf 8806999978887205899997199689998336873889---9-988899999998999862279627------78850 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---Q-SLAFRLCQLYEGLTDVIKNWRPEE------AAVEQ 72 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~---~-~~~~Rl~~I~~~l~~ii~~~~Pd~------vaiE~ 72 (169) +.-+.|+||-|-++.=.++++..++....+.....+.+.. . +..+=...|.+.+.++++++..+. +.+-- T Consensus 4 E~G~fLAlDlGGTNlRV~lV~L~g~~~~~~~q~~~~ip~~~~~~~t~~~LFd~IA~~I~~fl~~~~~~~~~~~lpLGfTF 83 (165) T 1ig8_A 4 ESGDFLAIDLGGTNLRVVLVKLGGDRTFDTTQSKYRLPDAMRTTQNPDELWEFIADSLKAFIDEQFPQGISEPIPLGFTF 83 (165) T ss_dssp CEEEEEEEEECSSEEEEEEEEEESSSCEEEEEEEEECCTTGGGCSCTHHHHHHHHHHHHHHHHHHCTTCCCSCEEEEEEC T ss_pred CCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE T ss_conf 56656999417983699998303677736666564063144422781889999999999864531234767500004898 Q ss_pred HHH--------------CCCHHHHHHHHHHHHHHHH-HHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHH Q ss_conf 332--------------0241247889999999999-998601617752606777653168888999999999 Q gi|254780554|r 73 VFV--------------NKDAVATLKLGQARAIAIL-SPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMML 130 (169) Q Consensus 73 ~F~--------------~~n~~t~~~lg~arGvi~l-~~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV 130 (169) .|= .|.....-..|+-.+..+- ++.++++|+.- .+++.+|...-..|..+. T Consensus 84 SFP~~Q~si~~g~Li~WtKGF~~~gv~G~Dv~~lL~~Al~r~~l~V~v-------~aivND~~~~~~~~~~~~ 149 (165) T 1ig8_A 84 SFPASQNKINEGILQRWTKGFDIPNIENHDVVPMLQKQITKRNIPIEV-------VALINDGSGAGAAVIAAL 149 (165) T ss_dssp CSSEECSBTTCCEECCCCTTCCCTTCTTSBHHHHHHHHHHHTTCCEEE-------EEEECHTTTHHHHHHHHH T ss_pred ECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCC-------EEEEECCCHHHHHHHHHH T ss_conf 413324777876788853255444557854788999999875998663-------488704616889999999 No 49 >>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} (A:1-185,A:357-384) Probab=72.82 E-value=7.4 Score=19.66 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=51.0 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCC Q ss_conf 38899988899999998999862279627788503320241247889999999999998601617752606777653168 Q gi|254780554|r 39 SCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118 (169) Q Consensus 39 t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~ 118 (169) .....++.+.+..+...+++++.+++||.|.+..- ..+++.. -+++...+||+..+.... .+++ T Consensus 61 ~~~~~~~~~~~~~~i~~l~~vl~~~kPDlVlV~GD-----~~~~la~-------AlaA~~~~IPVaHieaGl----rs~d 124 (213) T 1vgv_A 61 XQPGQGLTEITCRILEGLKPILAEFKPDVVLVHGD-----TTTTLAT-------SLAAFYQRIPVGHVEAGL----RTGD 124 (213) T ss_dssp CSTTSCHHHHHHHHHHHHHHHHHHHCCSEEEEETT-----CHHHHHH-------HHHHHTTTCCEEEESCCC----CCSC T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECC-----CCCHHHH-------HHHHHHHCCEEEEEECCC----CCCC T ss_conf 89999999999999986488897446654032036-----5311348-------999874164389862244----6677 Q ss_pred CC--CCHHHHHHHHHHH Q ss_conf 88--8999999999996 Q gi|254780554|r 119 GH--GDKKQIHMMLKML 133 (169) Q Consensus 119 G~--A~KeqV~~mV~~l 133 (169) -. .-.|....++.++ T Consensus 125 ~~~g~~ee~~R~~id~l 141 (213) T 1vgv_A 125 LYSPWPEEANRTLTGHL 141 (213) T ss_dssp TTSSTTHHHHHHHHHTT T ss_pred CCCCCHHHHHHHHCCCC T ss_conf 32146366666531432 No 50 >>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A (A:1-120,A:276-302) Probab=71.89 E-value=6.4 Score=20.04 Aligned_cols=59 Identities=8% Similarity=0.107 Sum_probs=39.7 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHH Q ss_conf 069999788872058999971996899983368738899988899999998999862279627788503 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQV 73 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~ 73 (169) -.+||||-|-+.+-++++|..+. .+....+.+... ..+.+.+.++++++..+...+=.+ T Consensus 3 ~~~iGIdIg~t~i~~~l~Dl~G~---ii~~~~~p~~~~-------~~~~~~I~~~i~~~~~~~~~i~gi 61 (147) T 3epq_A 3 AXLGGIEAGGTXFVCAVGREDGT---IIDRIEFPTXXP-------DETIEXVIQYFSQFSLQAIGIGSF 61 (147) T ss_dssp CCEEEEEECSSEEEEEEECTTSC---EEEEEEEECCCH-------HHHHHHHHHHHTTSCCSEEEEEEC T ss_pred CEEEEEEECCCEEEEEEECCCCC---EEEEEEECCCCH-------HHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 66999997777799999969995---999999658997-------999999999998714765588101 No 51 >>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} (A:1-176,A:349-376) Probab=71.04 E-value=8.1 Score=19.41 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=50.5 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCC Q ss_conf 38899988899999998999862279627788503320241247889999999999998601617752606777653168 Q gi|254780554|r 39 SCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGV 118 (169) Q Consensus 39 t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~ 118 (169) .....++.+.+..+...+.+++++++||.|.+-.- ..+++. .-+++...+||+..+-... .|++ T Consensus 66 ~~~~~sl~~~~~~~i~~~~~~l~~~~PD~VlV~GD-----t~~~lA-------~AlaA~~~~IPvaHieaGl----rS~d 129 (204) T 1v4v_A 66 XQERQALPDLAARILPQAARALKEXGADYVLVHGD-----TLTTFA-------VAWAAFLEGIPVGHVEAGL----RSGN 129 (204) T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHTTCSEEEEESS-----CHHHHH-------HHHHHHHTTCCEEEETCCC----CCSC T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCC-----CCCCHH-------HHHHHHHHHHHHHEECCCC----CCCC T ss_conf 89888899999999998776654047652310136-----643113-------6788987634451110355----6666 Q ss_pred C--CCCHHHHHHHHHHH Q ss_conf 8--88999999999996 Q gi|254780554|r 119 G--HGDKKQIHMMLKML 133 (169) Q Consensus 119 G--~A~KeqV~~mV~~l 133 (169) = .+..|....++.++ T Consensus 130 ~~~~~pEE~~R~~is~l 146 (204) T 1v4v_A 130 LKEPFPEEANRRLTDVL 146 (204) T ss_dssp TTSSTTHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHCCC T ss_conf 56773466655441234 No 52 >>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, infectious diseases, isomerase; 2.35A {Vibrio cholerae} (A:1-196,A:382-396) Probab=70.14 E-value=8.5 Score=19.29 Aligned_cols=78 Identities=18% Similarity=0.157 Sum_probs=52.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCC Q ss_conf 88999888999999989998622796277885033202412478899999999999986016177526067776531688 Q gi|254780554|r 40 CVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVG 119 (169) Q Consensus 40 ~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~G 119 (169) ...+++...+..+...+.+++.+++||.|.+-.- ..++ ++ ..+++...+||+..+-... .||+= T Consensus 87 ~~~~s~~~~~~~~~~~l~~~l~~~~PD~VlV~GD-----~~~~--La-----~AlaA~~~~IPvaHieaGl----rs~d~ 150 (211) T 3dzc_A 87 EPGQTLNGVTSKILLGMQQVLSSEQPDVVLVHGD-----TATT--FA-----ASLAAYYQQIPVGHVEAGL----RTGNI 150 (211) T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEETT-----SHHH--HH-----HHHHHHTTTCCEEEETCCC----CCSCT T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-----CCCC--HH-----HHHHHHHCCCCEEEEECCC----CCCCC T ss_conf 8998899999999999999898626764540014-----6542--13-----7777650355326850465----55686 Q ss_pred --CCCHHHHHHHHHHH Q ss_conf --88999999999996 Q gi|254780554|r 120 --HGDKKQIHMMLKML 133 (169) Q Consensus 120 --~A~KeqV~~mV~~l 133 (169) .+-.|....++.++ T Consensus 151 ~~g~peE~~R~~is~l 166 (211) T 3dzc_A 151 YSPWPEEGNRKLTAAL 166 (211) T ss_dssp TSSTTHHHHHHHHHHT T ss_pred CCCCHHHHHHHCCCCC T ss_conf 5356145542203652 No 53 >>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein structure initiative; 1.90A {Salmonella typhimurium} (A:1-128,A:313-327) Probab=68.37 E-value=9.3 Score=19.06 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=46.4 Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC-CCEEEEE Q ss_conf 88069999788872058999971996899983368738899988899999998999862279-6277885 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR-PEEAAVE 71 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~-Pd~vaiE 71 (169) ....++|||-|-+.+-++++|..++ .++...+.++ .....+-+..|.+.+.+...++. +..++|= T Consensus 22 ~~~~~igvdig~t~i~~~l~d~~G~---il~~~~~~~~-~~~~~~~~~~i~~~i~~~~~~~~~i~~Igia 87 (143) T 2ap1_A 22 SNAMYYGFDIGGTKIALGVFDSTRR---LQWEKRVPTP-HTSYSAFLDAVCELVEEADQRFGVKGSVGIG 87 (143) T ss_dssp -CCEEEEEEECSSEEEEEEEETTCC---EEEEEEEECC-CSCHHHHHHHHHHHHHHHHHHHTSCCEEEEE T ss_pred CCCEEEEEEECCCEEEEEEEECCCC---EEEEEEEECC-CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 8985999993646699999909998---9999999799-9999999999999999988863997279999 No 54 >>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide- binding, phosphoprotein, polymorphism; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3fzh_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 1ngh_A* 1ngd_A* 1ngf_A* 1bup_A* 1nga_A* ... (A:1-208,A:383-404) Probab=67.31 E-value=3.2 Score=21.93 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=18.2 Q ss_pred CCEEEEECCCCCEEEEEEEE Q ss_conf 80699997888720589999 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVD 23 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie 23 (169) .|.++|||=|+++++.|+.+ T Consensus 22 ~~~viGIDfGTTns~VA~~~ 41 (230) T 3i33_A 22 SMPAIGIDLGTTYSCVGVFQ 41 (230) T ss_dssp -CCCEEEEECSSEEEEEEEE T ss_pred CCCEEEEECCCCCEEEEEEE T ss_conf 99899999371478999998 No 55 >>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A (A:1-192,A:357-375) Probab=64.86 E-value=11 Score=18.63 Aligned_cols=55 Identities=31% Similarity=0.304 Sum_probs=40.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEC Q ss_conf 8999888999999989998622796277885033202412478899999999999986016177526 Q gi|254780554|r 41 VRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYA 107 (169) Q Consensus 41 ~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~ 107 (169) ...++...+..+...+..++++++||.|.++..++. . -...+++.+.++|++-+. T Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~kPD~V~v~~~~~~-----~-------l~~~laA~~~~IPvv~~~ 126 (211) T 3beo_A 72 DRQTLIDITTRGLEGLDKVMKEAKPDIVLVHGDTTT-----T-------FIASLAAFYNQIPVGHVE 126 (211) T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHCCSEEEEETTSHH-----H-------HHHHHHHHHTTCCEEEES T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC-----C-------HHHHHHHHHCCCEEEEEE T ss_conf 997799999999998899887447550442014564-----2-------015888873063179985 No 56 >>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* (A:1-85,A:223-247) Probab=64.06 E-value=11 Score=18.54 Aligned_cols=64 Identities=16% Similarity=0.037 Sum_probs=36.5 Q ss_pred CC-EEEEECCCCCEEEEEEEEEECCEEEEE--EEEEEECCCC---CCHHHHHHHHHHHHHHHHHC----CCCCE Q ss_conf 80-699997888720589999719968999--8336873889---99888999999989998622----79627 Q gi|254780554|r 4 SI-RIIGIDPGLRRTGWGIVDVAGDNLCFV--SSGTIVSCVR---QSLAFRLCQLYEGLTDVIKN----WRPEE 67 (169) Q Consensus 4 ~M-rILGIDPGl~~tG~avie~~~~~~~li--~~g~I~t~~~---~~~~~Rl~~I~~~l~~ii~~----~~Pd~ 67 (169) +| -+||||-|++++=.+++|.+++.+..- .+....+... .+..+=...+.+.++++++. +.|+. T Consensus 2 sm~yvLgIDiGTts~Ra~l~D~~G~iia~~~~~~~~~~~~~G~~EqDp~~~w~ai~~~i~~ll~~~~~~i~~~~ 75 (110) T 2w40_A 2 SMNVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVI 75 (110) T ss_dssp -CEEEEEEEECSSEEEEEEEETTCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHHHHSSSCE T ss_pred CCCEEEEEECCHHCCHHHEECCCCCEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 55599999731111012168399989999997067536999838989999999999999999998760488566 No 57 >>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* (A:1-266,A:476-506) Probab=62.55 E-value=12 Score=18.37 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=34.1 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-----CC---CCHHHHHHHHHHHHHHHHHCCC Q ss_conf 69999788872058999971996899983368738-----89---9988899999998999862279 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-----VR---QSLAFRLCQLYEGLTDVIKNWR 64 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-----~~---~~~~~Rl~~I~~~l~~ii~~~~ 64 (169) -+||||-|++++=.+++|.+++.. ......++ +. .+..+=...+.+.+.+++.... T Consensus 6 ~vlgIDiGTtsvK~~v~d~~g~~v---~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~i~~~~~~~~ 69 (297) T 3l0q_A 6 YFIGVDVGTGSARAGVFDLQGRXV---GQASREITXFKPKADFVEQSSENIWQAVCNAVRDAVNQAD 69 (297) T ss_dssp EEEEEEECSSEEEEEEEETTSCEE---EEEEEECCCEEEETTEEEECHHHHHHHHHHHHHHHHHHHT T ss_pred EEEEEEECCCCEEEEEECCCCCEE---EEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCC T ss_conf 799998035452555882999899---9999856627689994899999999999999999999749 No 58 >>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural genomics, transferase, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum atcc 11170} (A:1-242) Probab=60.12 E-value=13 Score=18.10 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=37.7 Q ss_pred CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCC--------CHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9988069999788872058999971996899983368738899--------9888999999989998622796 Q gi|254780554|r 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--------SLAFRLCQLYEGLTDVIKNWRP 65 (169) Q Consensus 1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~--------~~~~Rl~~I~~~l~~ii~~~~P 65 (169) |...=-+||||-|++++=.+++|.+++. +.......+... +..+-...+.+.+.+++.++.. T Consensus 3 m~~~~~~lgIDiGTts~Ka~l~d~~g~~---i~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~ 72 (242) T 3ifr_A 3 LAQGRQVIGLDIGTTSTIAILVRLPDTV---VAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTTAGE 72 (242) T ss_dssp ----CEEEEEEECSSEEEEEEEETTTEE---EEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHCG T ss_pred CCCCCEEEEEECCCCCEEEEEEECCCCE---EEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCC T ss_conf 7789889999772223376799688999---999998567015899808999999999999999999996398 No 59 >>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} (A:1-187,A:362-389) Probab=59.06 E-value=4.4 Score=21.06 Aligned_cols=18 Identities=28% Similarity=0.470 Sum_probs=16.4 Q ss_pred EEEEECCCCCEEEEEEEE Q ss_conf 699997888720589999 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVD 23 (169) Q Consensus 6 rILGIDPGl~~tG~avie 23 (169) .|+|||=|+++++.|+.+ T Consensus 5 ~viGIDfGTT~s~VA~~~ 22 (215) T 1yuw_A 5 PAVGIDLGTTYSCVGVFQ 22 (215) T ss_dssp CCEEEEECSSEEEEEEEC T ss_pred CEEEEECCCCCEEEEEEE T ss_conf 999998580108999998 No 60 >>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, SGC, transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} (A:1-107,A:275-287) Probab=55.42 E-value=13 Score=18.18 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=33.9 Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEH Q ss_conf 8806999978887205899997199689998336873889998889999999899986227962778850 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQ 72 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~ 72 (169) .+|..+|||-|.+.|=.+++| +++..+. .+.|+ ++ +.+.+++++.+...+.+-. T Consensus 18 ~~m~~lGIDiGsT~tK~V~~e--~~~l~f~---~f~t~-------~i----~~vl~~Lk~~~i~~i~aTG 71 (120) T 2ews_A 18 GSHMKVGIDAGGTLIKIVQEQ--DNQRTFK---TELTK-------NI----DQVVEWLNQQQIEKLCLTG 71 (120) T ss_dssp ---CEEEEEECSSEEEEEEEC--SSCEEEE---EEEGG-------GH----HHHHHHHHTSCCSEEEEES T ss_pred CCCEEEEEEECHHHEEEEEEE--CCCCEEE---EEEHH-------HH----HHHHHHHHHHCCCEEEEEC T ss_conf 997799999871139999993--9998999---86066-------69----9999999862588899970 No 61 >>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} (X:1-92,X:240-268) Probab=54.77 E-value=16 Score=17.55 Aligned_cols=89 Identities=9% Similarity=-0.033 Sum_probs=53.3 Q ss_pred EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHH Q ss_conf 99997888720589999719968999833687388999888999999989998622796277885033202412478899 Q gi|254780554|r 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLG 86 (169) Q Consensus 7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg 86 (169) +|.||-|-+++=+|+.| ++ +++..-.+.|+...+..+ +.-.+..+++.++.+.--||....+.=+... T Consensus 2 LLaIDIGNTniv~Glfd--g~--~l~~~~Ri~T~~~~T~DE----~~~~l~~ll~~~~i~~~~I~~iiISSVVP~l---- 69 (121) T 2h3g_X 2 IFVLDVGNTNAVLGVFE--EG--ELRQHWRMETDRHKTEDE----YGMLVKQLLEHEGLSFEDVKGIIVSSVVPPI---- 69 (121) T ss_dssp EEEEEECSSEEEEEEEE--TT--EEEEEEEEECCTTCCHHH----HHHHHHHHHHHTTCCGGGCCEEEEEESCHHH---- T ss_pred EEEEEECCCCEEEEEEE--CC--EEEEEEEEECCCCCCHHH----HHHHHHHHHHHCCCCCCCCCEEEEECCHHHH---- T ss_conf 89999875500999998--99--999999983587677789----9999999998648875432247863104879---- Q ss_pred HHHHHHHHHH-HHCCCCEEEECHH Q ss_conf 9999999999-8601617752606 Q gi|254780554|r 87 QARAIAILSP-ALARIPVSEYAPN 109 (169) Q Consensus 87 ~arGvi~l~~-~~~~i~v~ey~P~ 109 (169) ...+..++ ...+++.+.+.|. T Consensus 70 --t~~l~~a~k~~f~~~PlvV~pg 91 (121) T 2h3g_X 70 --MFALERMCEKYFKIKPLVVGPG 91 (121) T ss_dssp --HHHHHHHHHHHTCCCCEECSTT T ss_pred --HHHHHHHHHHHCCCCEEEECCC T ss_conf --9999999998368752996367 No 62 >>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} (A:1-244) Probab=54.20 E-value=17 Score=17.49 Aligned_cols=57 Identities=14% Similarity=0.108 Sum_probs=35.9 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-----CC---CCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 69999788872058999971996899983368738-----89---99888999999989998622796 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-----VR---QSLAFRLCQLYEGLTDVIKNWRP 65 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-----~~---~~~~~Rl~~I~~~l~~ii~~~~P 65 (169) -+||||-|++++=-+++|.+++.. .......+ +. .+..+=...+.+.++++..++.. T Consensus 3 ~~lgID~GTts~ka~l~d~~g~~i---~~~~~~~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~ 67 (244) T 2d4w_A 3 YVLAIDQGTTSSRAIVFDHSGEIY---STGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTRGNL 67 (244) T ss_dssp EEEEEEECSSEEEEEEECTTSCEE---EEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTC T ss_pred EEEEEEECCCCCHHEEECCCCCEE---EEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCC T ss_conf 999997112020120783989899---99997178033899809999999999999999999997599 No 63 >>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.30A {Porphyromonas gingivalis W83} (A:1-107,A:270-291) Probab=53.59 E-value=7.5 Score=19.63 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=25.9 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHH Q ss_conf 6999978887205899997199689998336873889998889999999899 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLT 57 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~ 57 (169) .||=.|-|+++|-|+++|..+ ... .++|.--.|+-+-=.+|.+.|. T Consensus 1 ~ILIADSGSTKTDW~l~~~g~-~i~-----~~~T~GlNP~~qs~eeI~~~l~ 46 (129) T 1zbs_A 1 XILIGDSGSTKTDWCIAKEGK-SLG-----RFQTSGINPFQQDRNEIDTALR 46 (129) T ss_dssp CEEEEEECSSEEEEEEEETTE-EEE-----EEEEECCCTTTSCHHHHHHHHT T ss_pred CEEEEEECHHHEEEEEECCCC-EEE-----EEECCCCCCCCCCHHHHHHHHH T ss_conf 989999261046899988997-899-----9976878831179999999999 No 64 >>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} (A:1-73,A:115-182,A:364-385) Probab=53.10 E-value=9.6 Score=18.94 Aligned_cols=18 Identities=44% Similarity=0.682 Sum_probs=16.0 Q ss_pred EEEEECCCCCEEEEEEEE Q ss_conf 699997888720589999 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVD 23 (169) Q Consensus 6 rILGIDPGl~~tG~avie 23 (169) .+||||-|+++|-.++.+ T Consensus 3 ~~iGIDfGTtnt~va~~~ 20 (163) T 2kho_A 3 KIIGIDLGTTNSCVAIMD 20 (163) T ss_dssp -CEEEECCSSEEEEEEEE T ss_pred CEEEEECCHHHEEEEEEE T ss_conf 879998470338999998 No 65 >>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} (D:1-73,D:115-182,D:364-383) Probab=52.10 E-value=7.9 Score=19.48 Aligned_cols=18 Identities=44% Similarity=0.682 Sum_probs=15.9 Q ss_pred EEEEECCCCCEEEEEEEE Q ss_conf 699997888720589999 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVD 23 (169) Q Consensus 6 rILGIDPGl~~tG~avie 23 (169) .+||||-|+++|-.++.+ T Consensus 3 ~~lGIDfGTtnt~va~~~ 20 (161) T 1dkg_D 3 KIIGIDLGTTNSCVAIMD 20 (161) T ss_dssp CCCEEECCSSEEEEEEEE T ss_pred CEEEEECCCCCEEEEEEE T ss_conf 999999461188999999 No 66 >>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} (A:1-156,A:333-359) Probab=50.23 E-value=13 Score=18.25 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=16.0 Q ss_pred EEEEECCCCCEEEEEEEE Q ss_conf 699997888720589999 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVD 23 (169) Q Consensus 6 rILGIDPGl~~tG~avie 23 (169) .++|||-|++++..|+.+ T Consensus 3 ~~iGIDfGTTnS~va~~~ 20 (183) T 2v7y_A 3 KIIGIDLGTTNSCVAVLE 20 (183) T ss_dssp CEEEEEECSSEEEEEEEE T ss_pred CEEEEECCHHCEEEEEEE T ss_conf 779998471228999999 No 67 >>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} (A:1-122,A:247-267) Probab=47.41 E-value=21 Score=16.83 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=32.9 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-CCCCHHHHHHHHHHHH-HHHHHC Q ss_conf 69999788872058999971996899983368738-8999888999999989-998622 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-VRQSLAFRLCQLYEGL-TDVIKN 62 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-~~~~~~~Rl~~I~~~l-~~ii~~ 62 (169) .+||||-|.+++=++++|..|+-. ....+.++ ......+.+..+...+ .++... T Consensus 13 y~iGIdIg~t~i~~~l~D~~G~il---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (143) T 1woq_A 13 PLIGIDIGGTGIKGGIVDLKKGKL---LGERFRVPTPQPATPESVAEAVALVVAELSAR 68 (143) T ss_dssp CEEEEEECSSEEEEEEEETTTTEE---EEEEEEEECCSSCCHHHHHHHHHHHHHHHHTS T ss_pred CEEEEEECCCEEEEEEEECCCCEE---EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 899999776559999998999989---99999967899999999999999999998651 No 68 >>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} (A:1-96,A:187-278,A:474-509) Probab=45.76 E-value=23 Score=16.67 Aligned_cols=62 Identities=15% Similarity=0.062 Sum_probs=38.5 Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEEC---------------C-C---CCCHHHHHHHHHHHHHHHHHCC Q ss_conf 8806999978887205899997199689998336873---------------8-8---9998889999999899986227 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS---------------C-V---RQSLAFRLCQLYEGLTDVIKNW 63 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t---------------~-~---~~~~~~Rl~~I~~~l~~ii~~~ 63 (169) ..=-+||||-|++.+=..++|.+.++. +.+..... + + ..+..+=...+.+.+++++++. T Consensus 3 ~~~~~lgiD~GTts~ka~l~d~~~G~i--ia~~~~~~~~~~~~~~~~~~~~~p~~g~~Eqdp~~~w~~~~~~i~~~~~~~ 80 (224) T 3jvp_A 3 LTKYTIGVDYGTESGRAVLIDLSNGQE--LADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDYVEVLTTSVPAVMKES 80 (224) T ss_dssp --CEEEEEEECSSEEEEEEEETTTCCE--EEEEEEECTTCCBSSBSTTSCCBCCTTCCEECHHHHHHHHTTHHHHHHHC- T ss_pred CCCEEEEEECCCCCEEEEEEECCCCEE--EEEEEEEECCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHC T ss_conf 780799997035452889998899909--999998602443211378888678988167789999999999999999984 Q ss_pred CCC Q ss_conf 962 Q gi|254780554|r 64 RPE 66 (169) Q Consensus 64 ~Pd 66 (169) ..+ T Consensus 81 ~i~ 83 (224) T 3jvp_A 81 GVD 83 (224) T ss_dssp --C T ss_pred CCC T ss_conf 989 No 69 >>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal binding protein; HET: PG4; 1.80A {Thermococcus kodakarensis} (A:) Probab=45.26 E-value=23 Score=16.63 Aligned_cols=59 Identities=8% Similarity=0.256 Sum_probs=40.0 Q ss_pred CCCEEEEECCCCCEEEE-EEE-E--------EECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 88069999788872058-999-9--------71996899983368738899988899999998999862 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGW-GIV-D--------VAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIK 61 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~-avi-e--------~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~ 61 (169) =++||+.||.+...+-+ ++. + ..-+.+-+++.|.....-.....++...+++.+.+..+ T Consensus 5 iP~kVv~i~~~~A~vd~~G~~r~v~l~lv~e~~vGD~VLvh~G~Ai~kideeeA~e~l~~l~~l~~~~~ 73 (75) T 2z1c_A 5 VPGKVIEVNGPVAVVDFGGVKREVRLDLMPDTKPGDWVIVHTGFAIEKLDEKKAMEILEAWAEVEKAME 73 (75) T ss_dssp CCEEEEEEETTEEEEEETTEEEEEECTTSTTCCTTCEEEEETTEEEEEECHHHHHHHHHHHHHHHHHC- T ss_pred CCEEEEEECCCEEEEEECCEEEEEEEEEECCCCCCCEEEEEECHHHHHCCHHHHHHHHHHHHHHHHHHH T ss_conf 446999987998999809949999998608899898999940736554899999999999999999862 No 70 >>3js6_A Uncharacterized PARM protein; partition, segregation, filament; 1.95A {Staphylococcus aureus} (A:1-180,A:322-355) Probab=43.73 E-value=17 Score=17.43 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=15.4 Q ss_pred CCEEEEECCCCCEEEEEE Q ss_conf 806999978887205899 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGI 21 (169) Q Consensus 4 ~MrILGIDPGl~~tG~av 21 (169) +|.|+|||.|...|-++. T Consensus 3 nmliigiD~G~~~tK~~~ 20 (214) T 3js6_A 3 NVYVXALDFGNGFVKGKI 20 (214) T ss_dssp CEEEEEEEECSSEEEEEE T ss_pred CCCEEEEECCHHHEEEEE T ss_conf 983999993802399999 No 71 >>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, glycerol metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis KOD1} (O:1-238) Probab=43.34 E-value=25 Score=16.44 Aligned_cols=55 Identities=15% Similarity=0.076 Sum_probs=35.4 Q ss_pred EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-----CC---CCHHHHHHHHHHHHHHHHHCCC Q ss_conf 9999788872058999971996899983368738-----89---9988899999998999862279 Q gi|254780554|r 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-----VR---QSLAFRLCQLYEGLTDVIKNWR 64 (169) Q Consensus 7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-----~~---~~~~~Rl~~I~~~l~~ii~~~~ 64 (169) +||||-|++++=-+++|.+++.. ......++ +. .+..+=+..+.+.+.++++... T Consensus 5 ~lgiD~GTts~ka~l~d~~g~~v---~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~ 67 (238) T 2zf5_O 5 VLSLDEGTTSARAIIFDRESNIH---GIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQSAR 67 (238) T ss_dssp EEEEEECSSEEEEEEECTTCCEE---EEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHT T ss_pred EEEEEECCCCEEEEEEECCCCEE---EEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCC T ss_conf 99998103042323795889999---9999977721589982899999999999999999999759 No 72 >>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GTT GBP; 1.45A {Homo sapiens} (A:1-90) Probab=40.73 E-value=27 Score=16.19 Aligned_cols=32 Identities=6% Similarity=0.033 Sum_probs=27.2 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEE Q ss_conf 06999978887205899997199689998336 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT 36 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~ 36 (169) |+|--++++.....|.++...+++.-++|.|. T Consensus 1 m~I~~l~~~~~~~~~~~~~~~~~~~~lID~g~ 32 (90) T 1qh5_A 1 MKVEVLPALTDNYMYLVIDDETKEAAIVDPVQ 32 (90) T ss_dssp CEEEEEEETTTEEEEEEEETTTTEEEEESCSS T ss_pred CEEEEEEEECCEEEEEEEECCCCEEEEEECCC T ss_conf 95789410342689999989999899990898 No 73 >>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} (A:) Probab=39.01 E-value=29 Score=16.03 Aligned_cols=57 Identities=11% Similarity=0.018 Sum_probs=36.2 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-----CC---CCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 69999788872058999971996899983368738-----89---99888999999989998622796 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-----VR---QSLAFRLCQLYEGLTDVIKNWRP 65 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-----~~---~~~~~Rl~~I~~~l~~ii~~~~P 65 (169) -+||||-|++++=..++|.+++... ......+ .. .+..+=...+.+.+.+++++... T Consensus 4 ~~lgiDiGTssvKa~l~d~~g~~v~---~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~l~~~~~~ 68 (510) T 2p3r_A 4 YIVALDQGTTSSRAVVMDHDANIIS---VSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADI 68 (510) T ss_dssp EEEEEEECSSEEEEEEECTTCCEEE---EEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTC T ss_pred EEEEEEECCCCCHHHEECCCCCEEE---EEEECCCEECCCCCCEEECHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999982021300116719898999---9996378042899908999999999999999999997599 No 74 >>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural protein; 1.90A {Thermoplasma acidophilum dsm 1728} (A:1-185,A:320-346) Probab=32.35 E-value=28 Score=16.06 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=15.3 Q ss_pred CCCEEEEECCCCCEEEEEE Q ss_conf 8806999978887205899 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGI 21 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~av 21 (169) .+|.++|||+|...+-++. T Consensus 19 ~~~~~igiD~G~~~~K~~~ 37 (212) T 2fsj_A 19 SHMVVVGLDVGYGDTKVIG 37 (212) T ss_dssp --CEEEEEEECSSEEEEEC T ss_pred CCCEEEEEECCCCCEEEEE T ss_conf 8888999996868689999 No 75 >>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} (A:1-142,A:312-344) Probab=30.73 E-value=30 Score=15.87 Aligned_cols=102 Identities=13% Similarity=-0.027 Sum_probs=47.9 Q ss_pred EEEEECCCCCEEEEEEEEEE--CCEEEEEEEE----EEEC-----------------------CCCCCHHHHHHHHHHHH Q ss_conf 69999788872058999971--9968999833----6873-----------------------88999888999999989 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVA--GDNLCFVSSG----TIVS-----------------------CVRQSLAFRLCQLYEGL 56 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~--~~~~~li~~g----~I~t-----------------------~~~~~~~~Rl~~I~~~l 56 (169) .++|||-|++++-.++.+.. -+.+.++.+. .+.. .......+-...+.+.+ T Consensus 4 ~~iGIDlGTTns~Va~~~~~~v~~~PSvVa~~~~~~~~~~vG~~Ak~~~~~~~~~~~~~~~~~~g~~s~~ei~~~~l~~l 83 (175) T 1jce_A 4 KDIGIDLGTANTLVFLRGKGIVVNEPSVIAIDSTTGEILKVGLEAKNXIGKTPATIKAIRPXRDGVIADYTVALVXLRYF 83 (175) T ss_dssp CEEEEEECSSEEEEEETTTEEEEEEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEEECCEETTEESSHHHHHHHHHHH T ss_pred CCEEEECCHHHEEEEEECCCEECCCCCEEEEECCCCCEEECHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEHHHHHHHH T ss_conf 86899877455899996978887898189999899949972699998461890628999774898440000036678778 Q ss_pred HHHHHCC---CCCEEEEE-HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEC--HHHHHHHHCCCC Q ss_conf 9986227---96277885-033202412478899999999999986016177526--067776531688 Q gi|254780554|r 57 TDVIKNW---RPEEAAVE-QVFVNKDAVATLKLGQARAIAILSPALARIPVSEYA--PNTIKKAVIGVG 119 (169) Q Consensus 57 ~~ii~~~---~Pd~vaiE-~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~--P~~vKkavtG~G 119 (169) .+..+++ .+..+++= ...|....+ -++.-++...|+.+...- |+ -+..++| T Consensus 84 k~~ae~~~g~~~~~vViTVPa~f~~~qR---------~al~~Aa~~AGl~vv~LI~EPt---AAAlaYG 140 (175) T 1jce_A 84 INKAKGGXNLFKPRVVIGVPIGITDVER---------RAILDAGLEAGASKVFLIEEPX---AAAIGSN 140 (175) T ss_dssp HHHHHTSCCSCCCEEEEEECTTCCHHHH---------HHHHHHHHHTTCSEEEEEEHHH---HHHHHTT T ss_pred HHHHHCCCCCCCCCEEEEECCCCCHHHH---------HHHHHHHHHHCCCEEEEECCHH---HHHHHHC T ss_conf 7764003346778769997698899999---------9999999981887799836789---9975512 No 76 >>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} (A:) Probab=29.34 E-value=41 Score=15.05 Aligned_cols=50 Identities=6% Similarity=-0.051 Sum_probs=31.4 Q ss_pred ECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHH Q ss_conf 19968999833687388999888999999989998622796277885033 Q gi|254780554|r 25 AGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVF 74 (169) Q Consensus 25 ~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F 74 (169) ...+++++.+.+...........+...-.+.+.+.|..++||+|++-++. T Consensus 7 ~~~~lrv~T~Nv~~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIi~LQEv~ 56 (301) T 1zwx_A 7 YPGNFKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAF 56 (301) T ss_dssp CCCSCEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSEEEEEEEC T ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 99987999983886765668981689999999999875699889998587 No 77 >>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} (A:1-92) Probab=29.29 E-value=41 Score=15.08 Aligned_cols=32 Identities=9% Similarity=-0.006 Sum_probs=25.8 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEE Q ss_conf 06999978887205899997199689998336 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGT 36 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~ 36 (169) |+|--+++|.....|.++...++..-++|.|. T Consensus 1 m~i~~l~~~~~~~~~~i~~~~~~~~~liD~g~ 32 (92) T 1xm8_A 1 MQIELVPCLKDNYAYILHDEDTGTVGVVDPSE 32 (92) T ss_dssp CEEEEEEETTTEEEEEEECTTTCCEEEECCSS T ss_pred CEEEEEEEECCEEEEEEEECCCCEEEEECCCC T ss_conf 96899624534689999989999899989989 No 78 >>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} (A:1-76,A:369-404,A:592-610) Probab=29.06 E-value=42 Score=15.02 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=47.2 Q ss_pred EEEEECCCCCEEEEEEEEEE-CCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 69999788872058999971-996899983368738899988899999998999862279 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~-~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~ 64 (169) .|.|||-|.+.+=..+-+.+ .++..++-++.+.+..-......+..+...+.+.+++-. T Consensus 3 iIaGIDiGaSat~ViLas~~~a~el~i~~~a~i~s~GikG~~pni~G~~~AI~kALekAG 62 (131) T 2d0o_A 3 YIAGIDIGNSSTEVALATLDEAGALTITHSALAETTGIKGTLRNVFGIQEALALVARGAG 62 (131) T ss_dssp EEEEEEECSSEEEEEEEEECTTCCEEEEEEEEEECCSSTTSTTHHHHHHHHHHHHHHHHT T ss_pred EEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC T ss_conf 698985077521278899638982677524646667756748789999999999999829 No 79 >>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis mr-1} (A:1-145,A:326-370) Probab=28.94 E-value=42 Score=15.01 Aligned_cols=124 Identities=17% Similarity=0.171 Sum_probs=75.2 Q ss_pred CCCEEEEECCCCCEEEE--EEEEEECCEEEEEEEEEEECCC------------CCCHHHHHHHHH--------HHHHHHH Q ss_conf 88069999788872058--9999719968999833687388------------999888999999--------9899986 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGW--GIVDVAGDNLCFVSSGTIVSCV------------RQSLAFRLCQLY--------EGLTDVI 60 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~--avie~~~~~~~li~~g~I~t~~------------~~~~~~Rl~~I~--------~~l~~ii 60 (169) -+|+++|+=-|++-=|. ++++.++..++++.+.+...++ .....+.+..+. +.+.+++ T Consensus 3 ~~~~~iGlMSGTSlDGID~alv~~~g~~~~~~~~~~~p~p~~lr~~l~~~~~~~~~~~~~~~~l~~~lg~~~a~av~~ll 82 (190) T 3cqy_A 3 NKAYYIGLXSGTSXDGVDAVLVDFAGEQPQLIGTHTETIPTHLLKGLQRLCLPGTDEINRLGRLDRSVGKLFALAVNNLL 82 (190) T ss_dssp TCCEEEEEEECTTCCCEEEEEEECSSSSCEEEEEEEECCCHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCEEEEEECCHHHHHHEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88989998655424436258999808936998542431899999999986037865499999999999999999999886 Q ss_pred HCCC--C---CEEEEEHH-HHCC---CHHHHHHHHHHHHHHHHHHHHCCCCEE-EECHHHHHHHHCCCCCCCHHHHHHHH Q ss_conf 2279--6---27788503-3202---412478899999999999986016177-52606777653168888999999999 Q gi|254780554|r 61 KNWR--P---EEAAVEQV-FVNK---DAVATLKLGQARAIAILSPALARIPVS-EYAPNTIKKAVIGVGHGDKKQIHMML 130 (169) Q Consensus 61 ~~~~--P---d~vaiE~~-F~~~---n~~t~~~lg~arGvi~l~~~~~~i~v~-ey~P~~vKkavtG~G~A~KeqV~~mV 130 (169) ++++ | |.|+.-.+ .+++ ....++.+|..- ..+.+-|+||. .|-.+.+..-=-|--.--||.++++. T Consensus 83 ~~~~l~~~~id~IGsHGQTv~H~P~~~~~~TlQiG~~~----~iA~~tgi~VV~DFR~~DiA~GGQG~~~d~~EA~aFA~ 158 (190) T 3cqy_A 83 AKTKIAKDEIIAIGSHGQTVRHXPNLEVGFTLQIGDPN----TIATETGIDVIADFRRKDIALGGQGVDPKWAEGIAFAW 158 (190) T ss_dssp HHHCCCGGGEEEEEEEEEEEEEETTSSSCEEEEESCHH----HHHHHHSSCEEECCHHHHHHTTSCCCCTTTHHHHHHHH T ss_pred HHCCCCCCCEEEEECCCCEEEECCCCHHHHHHHHCCCH----HHHHHHCCCEEEECCCCHHHCCCCCCCHHHHHHHHHHH T ss_conf 42034434435870488557842451134556517718----88987087445530103765398779867999999999 No 80 >>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} (A:62-196,A:435-451) Probab=28.69 E-value=42 Score=14.98 Aligned_cols=64 Identities=16% Similarity=0.049 Sum_probs=45.3 Q ss_pred CCEEEEECCCCCEEEEEEEEEECC-EEEEEEEEEEECC---CCCCHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 806999978887205899997199-6899983368738---899988899999998999862279627 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSC---VRQSLAFRLCQLYEGLTDVIKNWRPEE 67 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~-~~~li~~g~I~t~---~~~~~~~Rl~~I~~~l~~ii~~~~Pd~ 67 (169) .=+.|+||-|-++.=.+.++..++ +...+..-....+ ...+-.+-...|.+.+.++++++.++. T Consensus 6 ~G~fLAlDlGGTNlRV~~V~L~G~~~~~~~~~~~~~ip~~~~~~t~~~LFd~IA~~i~~fl~~~~~~~ 73 (152) T 1bdg_A 6 TGNFLALDLGGTNYRVLSVTLEGKGKSPRIQERTYCIPAEKMSGSGTELFKYIAETLADFLENNGMKD 73 (152) T ss_dssp CEEEEEEEESSSSEEEEEEEECC-CCCCEEEEEEECCCTTTTTSBHHHHHHHHHHHHHHHHHHTTCCS T ss_pred EEEEEEEEECCCCEEEEEEEECCCCCCEEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 58999998189848999999779997247889875088787169899999999999999998548766 No 81 >>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} (A:55-200,A:431-457) Probab=26.24 E-value=47 Score=14.71 Aligned_cols=63 Identities=6% Similarity=-0.089 Sum_probs=44.9 Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCC---CCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 806999978887205899997199689998336873889---998889999999899986227962 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNWRPE 66 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~---~~~~~Rl~~I~~~l~~ii~~~~Pd 66 (169) .=+.|+||-|-++.=.+.++..++....+.....+.+.. .+-.+=...|.+.+.+.++.+.++ T Consensus 6 ~G~fLALDlGGTNlRV~~V~L~G~~~~~~~~~~~~ip~~~~~gt~~eLFd~IA~~i~~fl~~~~~~ 71 (173) T 2yhx_A 6 AGSFLAIVMGGGDLEVILISLAGRQESSIXASRSLAAAMSTTAIPSDLWGNXAXSNAAFSSXEFSS 71 (173) T ss_dssp CEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCTTTTSCSCTHHHHHHHHHHHHHHHHHHTSS T ss_pred EEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEECCHHHCCCCHHHHHCCHHHHHHHHHHHCCCC T ss_conf 689999981798579999998389866981356888888645997786475488899998501556 No 82 >>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A* (A:1-178) Probab=25.23 E-value=49 Score=14.60 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=10.1 Q ss_pred CEEEEEHHHHCCCHHHHHHHHH Q ss_conf 2778850332024124788999 Q gi|254780554|r 66 EEAAVEQVFVNKDAVATLKLGQ 87 (169) Q Consensus 66 d~vaiE~~F~~~n~~t~~~lg~ 87 (169) .-|+||+|| |.|..|+..|.+ T Consensus 139 ~RiviEKPf-G~dl~Sa~~Ln~ 159 (178) T 2bh9_A 139 NRIIVEKPF-GRDLQSSDRLSN 159 (178) T ss_dssp EEEEECSCS-CSSHHHHHHHHH T ss_pred CEEEEECCC-CCCHHHHHHHHH T ss_conf 216761443-356787999999 No 83 >>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) - NAD(P)); 2.00A {Leuconostoc mesenteroides} (A:1-182) Probab=25.07 E-value=49 Score=14.58 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=6.6 Q ss_pred HHHHHHHHHCCCCCE Q ss_conf 998999862279627 Q gi|254780554|r 53 YEGLTDVIKNWRPEE 67 (169) Q Consensus 53 ~~~l~~ii~~~~Pd~ 67 (169) .+.+.+.++.+..+. T Consensus 55 r~~v~~~l~~~~~~~ 69 (182) T 1dpg_A 55 KQLVRDCIKDFTDDQ 69 (182) T ss_dssp HHHHHHHHGGGCSCH T ss_pred HHHHHHHHHHHCCCH T ss_conf 999999998647888 No 84 >>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics, structural genomics consortium, SGC, allosteric enzyme; HET: GLC BG6; 2.80A {Homo sapiens} (A:54-186,A:425-445) Probab=24.43 E-value=51 Score=14.51 Aligned_cols=65 Identities=11% Similarity=-0.025 Sum_probs=41.0 Q ss_pred CCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEEC-CCCCCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 98806999978887205899997199689998336873-889998889999999899986227962 Q gi|254780554|r 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-CVRQSLAFRLCQLYEGLTDVIKNWRPE 66 (169) Q Consensus 2 ~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t-~~~~~~~~Rl~~I~~~l~~ii~~~~Pd 66 (169) ++.-+.|+||-|-++.=.+.++..++.......-.|.. -+..+-.+=.-.|.+.+.+.+.++.++ T Consensus 3 ~E~G~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~ip~~~~~~t~~~LFd~IA~~i~~fl~~~~~~ 68 (154) T 3hm8_A 3 SERGDFLALDLGGTNFRVLLVRVTTGVQITSEIYSIPETVAQGSGQQLFDHIVDCIVDFQQKQGLS 68 (154) T ss_dssp CCCEEEEEEEESSSSEEEEEEEESSSEEEEEEEECCCHHHHTSBHHHHHHHHHHHHHHHHHHHTCT T ss_pred CCEEEEEEEEECCCCEEEEEEEECCCCEEEEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHCCCC T ss_conf 713789999968984899999977991688887656877724988999999999999999961889 No 85 >>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermotoga maritima MSB8} (A:105-173) Probab=22.37 E-value=43 Score=14.94 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=17.0 Q ss_pred HHHHHHHHCCCCCEEEEEHHH Q ss_conf 989998622796277885033 Q gi|254780554|r 54 EGLTDVIKNWRPEEAAVEQVF 74 (169) Q Consensus 54 ~~l~~ii~~~~Pd~vaiE~~F 74 (169) +++.++.++|+|..|--|++| T Consensus 49 ee~~~i~ke~~p~~vl~ddi~ 69 (69) T 2a6a_A 49 EELEEITKEFSPKIVLKDDLL 69 (69) T ss_dssp HHHHHHHHHHCCSEEEESSCC T ss_pred HHHHHHHHHCCCCEEECCCCC T ss_conf 999999974499889778767 No 86 >>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} (B:36-143) Probab=22.12 E-value=56 Score=14.23 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=30.5 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHH-HHHHHHHHHHHHC----CCCEEEEC Q ss_conf 99999989998622796277885033202412478899-9999999999860----16177526 Q gi|254780554|r 49 LCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLG-QARAIAILSPALA----RIPVSEYA 107 (169) Q Consensus 49 l~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg-~arGvi~l~~~~~----~i~v~ey~ 107 (169) -..+.+.+.++.++|+|+.++|=.- .-+. .+| -..+++--.-.+. ++|+..+. T Consensus 46 ~~kL~~aI~~~~~~~~p~~I~V~~t-----c~~~-iIGdDi~~v~~~~~~e~~~~~~~~ii~v~ 103 (108) T 1mio_B 46 GSNIKTAVKNIFSLYNPDIIAVHTT-----CLSE-TLGDDLPTYISQMEDAGSIPEGKLVIHTN 103 (108) T ss_dssp HHHHHHHHHHHHHHTCCSEEEEEEC-----HHHH-HHTCCHHHHHHHHHHTTCSCTTCEEEEEC T ss_pred HHHHHHHHHHHHHHCCCCEEEEECC-----CHHH-HHCCCHHHHHHHHHHHCCCCCCCEEEEEC T ss_conf 8999999999998509989999678-----6798-85688999999999855999886289850 Done!