Query gi|254780554|ref|YP_003064967.1| Holliday junction resolvase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 169 No_of_seqs 124 out of 1248 Neff 6.5 Searched_HMMs 23785 Date Tue May 31 20:06:39 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780554.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1hjr_A Holliday junction resol 100.0 0 0 344.8 20.2 156 6-162 2-157 (158) 2 1kcf_A Hypothetical 30.2 KD pr 98.3 5.5E-05 2.3E-09 50.3 14.6 153 2-154 37-238 (258) 3 1vhx_A Putative holliday junct 98.2 4.2E-06 1.8E-10 57.2 7.8 108 4-119 2-113 (150) 4 1nu0_A Hypothetical protein YQ 98.0 3.6E-05 1.5E-09 51.5 9.2 104 4-117 2-109 (138) 5 1iv0_A Hypothetical protein; r 97.7 5E-05 2.1E-09 50.6 5.1 88 5-106 1-91 (98) 6 3bzc_A TEX; helix-turn-helix, 96.7 0.002 8.5E-08 40.7 5.1 61 5-71 329-390 (785) 7 2gel_A Putative GRAM negative 96.2 0.037 1.5E-06 32.9 9.1 95 5-111 1-97 (231) 8 2ivn_A O-sialoglycoprotein end 96.0 0.029 1.2E-06 33.6 7.8 93 5-110 1-109 (330) 9 3eno_A Putative O-sialoglycopr 95.8 0.052 2.2E-06 32.0 8.5 96 3-110 4-114 (334) 10 3en9_A Glycoprotease, O-sialog 95.6 0.13 5.4E-06 29.6 10.5 99 2-109 3-112 (540) 11 2a6a_A Hypothetical protein TM 95.6 0.059 2.5E-06 31.6 7.9 96 3-111 11-108 (218) 12 2gup_A ROK family protein; sug 95.0 0.049 2.1E-06 32.1 6.0 60 3-71 2-61 (292) 13 1zc6_A Probable N-acetylglucos 94.8 0.073 3.1E-06 31.1 6.4 61 1-64 6-68 (305) 14 2aa4_A Mannac kinase, putative 94.7 0.065 2.7E-06 31.4 5.9 56 5-67 1-56 (289) 15 2qm1_A Glucokinase; alpha-beta 94.3 0.12 4.8E-06 29.9 6.4 57 6-65 7-63 (326) 16 2e2o_A Hexokinase; acetate and 93.0 0.073 3.1E-06 31.1 3.6 63 4-71 1-66 (299) 17 1t6c_A Exopolyphosphatase; alp 92.1 0.66 2.8E-05 25.2 10.6 80 3-82 10-102 (315) 18 1hux_A Activator of (R)-2-hydr 91.9 0.67 2.8E-05 25.1 7.4 51 4-59 2-52 (270) 19 3eo3_A Bifunctional UDP-N-acet 91.8 0.52 2.2E-05 25.8 6.7 58 2-64 17-74 (333) 20 3ll3_A Gluconate kinase; xylul 90.9 0.89 3.7E-05 24.4 8.7 61 4-67 2-71 (504) 21 1woq_A Inorganic polyphosphate 90.9 0.9 3.8E-05 24.4 8.3 62 2-64 9-70 (267) 22 3lm2_A Putative kinase; struct 89.8 0.39 1.6E-05 26.6 4.6 61 1-72 2-62 (226) 23 1u6z_A Exopolyphosphatase; alp 87.7 1.5 6.5E-05 22.9 7.0 70 2-71 8-88 (513) 24 2ews_A Pantothenate kinase; PA 87.0 1.1 4.8E-05 23.7 5.4 52 3-71 19-70 (287) 25 3i33_A Heat shock-related 70 k 86.2 0.41 1.7E-05 26.5 2.8 20 4-23 22-41 (404) 26 3i8b_A Xylulose kinase; strain 85.4 2 8.6E-05 22.2 6.9 69 1-71 1-71 (515) 27 3p4i_A Acetate kinase; structu 84.8 2 8.4E-05 22.2 5.8 55 3-59 11-70 (392) 28 2ch5_A NAGK protein; transfera 84.2 1.1 4.4E-05 23.9 4.2 56 6-64 7-64 (347) 29 1saz_A Probable butyrate kinas 82.1 0.65 2.7E-05 25.2 2.4 21 4-24 1-21 (381) 30 3g25_A Glycerol kinase; IDP007 82.0 2.8 0.00012 21.3 7.9 59 3-64 2-70 (501) 31 1zbs_A Hypothetical protein PG 81.9 2.8 0.00012 21.3 5.6 60 7-69 2-62 (291) 32 3htv_A D-allose kinase, alloki 81.4 1.1 4.7E-05 23.8 3.4 60 4-67 6-65 (310) 33 1nbw_A Glycerol dehydratase re 80.6 2.9 0.00012 21.3 5.3 18 7-24 411-428 (607) 34 3cer_A Possible exopolyphospha 80.2 3.2 0.00014 20.9 10.3 81 3-83 14-108 (343) 35 2iir_A Acetate kinase; transfe 79.0 3.6 0.00015 20.7 6.2 52 5-58 1-72 (403) 36 1z05_A Transcriptional regulat 78.3 3.7 0.00016 20.6 7.0 59 4-66 107-165 (429) 37 3epq_A Putative fructokinase; 77.8 3.9 0.00016 20.5 5.9 59 4-72 2-60 (302) 38 3mcp_A Glucokinase; structural 76.7 4.1 0.00017 20.3 6.1 57 4-64 8-64 (366) 39 1g99_A Acetate kinase; alpha/b 75.8 3.2 0.00013 21.0 4.3 24 5-28 1-24 (408) 40 2uyt_A Rhamnulokinase; rhamnos 75.1 2.8 0.00012 21.3 3.9 23 6-28 5-27 (489) 41 1z6r_A MLC protein; transcript 71.7 5.5 0.00023 19.5 5.2 59 4-66 84-142 (406) 42 2d0o_A DIOL dehydratase-reacti 68.3 6.5 0.00027 19.1 7.5 28 108-135 546-573 (610) 43 2hoe_A N-acetylglucosamine kin 66.6 7.1 0.0003 18.8 6.8 55 5-62 87-141 (380) 44 3h6e_A Carbohydrate kinase, FG 66.3 3.3 0.00014 20.9 2.6 24 6-29 7-30 (482) 45 1dkg_D Molecular chaperone DNA 65.2 2.3 9.8E-05 21.8 1.7 18 6-23 3-20 (383) 46 3mdq_A Exopolyphosphatase; str 63.1 8.2 0.00035 18.4 9.8 78 6-83 5-95 (315) 47 2dpn_A Glycerol kinase; thermu 61.6 8.8 0.00037 18.3 6.9 59 6-64 3-66 (495) 48 1zxo_A Conserved hypothetical 60.0 1.6 6.6E-05 22.9 0.1 24 7-31 2-25 (291) 49 2p67_A LAO/AO transport system 59.7 6.6 0.00028 19.0 3.2 68 4-74 86-158 (341) 50 2v7y_A Chaperone protein DNAK; 58.2 7.4 0.00031 18.7 3.3 28 6-33 162-189 (509) 51 2w40_A Glycerol kinase, putati 54.9 11 0.00048 17.6 7.7 24 4-27 2-26 (503) 52 2zf5_O Glycerol kinase; hypert 54.7 11 0.00048 17.5 7.1 55 7-64 5-67 (497) 53 2ap1_A Putative regulator prot 53.9 12 0.0005 17.5 7.6 57 4-65 24-80 (327) 54 2kho_A Heat shock protein 70; 53.6 9.2 0.00039 18.1 3.1 33 124-156 347-381 (605) 55 3hi0_A Putative exopolyphospha 53.3 12 0.00051 17.4 7.7 81 4-84 14-107 (508) 56 2www_A Methylmalonic aciduria 53.3 4.2 0.00018 20.2 1.4 76 3-78 103-180 (349) 57 3cpe_A Terminase, DNA packagin 53.1 12 0.00051 17.4 7.5 61 5-72 420-484 (592) 58 3hz6_A Xylulokinase; xylulose, 53.1 12 0.00051 17.4 6.9 27 1-27 1-27 (511) 59 2z1c_A Hydrogenase expression/ 52.3 13 0.00053 17.3 4.5 56 3-63 5-75 (75) 60 3jvp_A Ribulokinase; PSI-II, N 51.7 13 0.00054 17.2 7.5 57 6-64 6-81 (572) 61 2e1z_A Propionate kinase; TDCD 51.7 13 0.00054 17.2 6.7 54 3-58 16-86 (415) 62 2fsj_A Hypothetical protein TA 51.1 6.7 0.00028 19.0 2.1 17 3-19 19-35 (346) 63 2itm_A Xylulose kinase, xylulo 50.8 13 0.00056 17.2 5.8 55 8-65 3-65 (484) 64 3c6a_A Terminase large subunit 50.3 13 0.00057 17.1 7.3 59 5-72 60-124 (232) 65 3p32_A Probable GTPase RV1496/ 46.9 7.3 0.00031 18.8 1.8 71 4-74 109-181 (355) 66 3ifr_A Carbohydrate kinase, FG 44.5 17 0.0007 16.6 6.5 57 5-64 7-71 (508) 67 1e4f_T Cell division protein F 41.7 18 0.00077 16.3 6.1 39 1-39 4-42 (419) 68 2p3r_A Glycerol kinase; glycer 40.0 19 0.00082 16.1 7.6 56 6-64 4-67 (510) 69 2zgy_A Plasmid segregation pro 39.5 20 0.00083 16.1 4.7 19 7-25 2-20 (320) 70 3khy_A Propionate kinase; csgi 39.4 20 0.00084 16.1 6.2 23 6-28 3-25 (384) 71 1io2_A Ribonuclease HII; endon 38.9 7 0.00029 18.9 0.6 56 5-63 1-63 (213) 72 1jce_A ROD shape-determining p 33.6 18 0.00075 16.3 2.0 16 6-21 4-19 (344) 73 2d4w_A Glycerol kinase; alpha 32.9 25 0.0011 15.4 7.6 54 7-63 4-65 (504) 74 3d3r_A Hydrogenase assembly ch 32.5 26 0.0011 15.4 5.4 57 3-62 26-98 (103) 75 3ot5_A UDP-N-acetylglucosamine 32.0 26 0.0011 15.3 6.9 57 41-109 91-147 (403) 76 3js6_A Uncharacterized PARM pr 28.7 19 0.0008 16.2 1.5 16 4-19 3-18 (355) 77 2ot2_A Hydrogenase isoenzymes 28.0 31 0.0013 14.9 4.3 51 4-59 6-77 (90) 78 3hlz_A Uncharacterized protein 27.8 31 0.0013 14.9 3.0 53 104-157 158-212 (269) 79 1v4v_A UDP-N-acetylglucosamine 27.0 32 0.0013 14.8 7.4 57 41-109 68-124 (376) 80 1uax_A Ribonuclease HII, ribon 25.9 22 0.00094 15.7 1.4 62 5-69 1-69 (220) 81 3l0q_A Xylulose kinase; xlylul 24.7 35 0.0015 14.5 6.6 59 6-64 6-69 (554) 82 2qm8_A GTPase/ATPase; G protei 22.7 17 0.00072 16.5 0.4 74 4-77 85-160 (337) 83 1d2d_A TRNA synthetase, tRNA l 20.9 30 0.0012 15.0 1.3 18 119-136 19-36 (59) 84 3h3n_X Glycerol kinase; ATP-bi 20.6 42 0.0018 14.0 8.3 60 1-63 1-68 (506) 85 2h3g_X Biosynthetic protein; p 20.2 43 0.0018 14.0 5.3 35 7-45 2-36 (268) No 1 >1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6 Probab=100.00 E-value=0 Score=344.84 Aligned_cols=156 Identities=40% Similarity=0.677 Sum_probs=150.4 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHH Q ss_conf 69999788872058999971996899983368738899988899999998999862279627788503320241247889 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKL 85 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~l 85 (169) .|||||||+++|||||+|.++++++++++|+|+|+++ ++++||..|++++.+++++|+||.|++|++||++|++|++++ T Consensus 2 iILGiDPgl~~tG~avid~~~~~~~~i~~g~i~t~~~-~~~~Rl~~I~~~l~~ii~~~~pd~vaiE~~f~~~n~~sa~~l 80 (158) T 1hjr_A 2 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKL 80 (158) T ss_dssp EEEEEECCSSEEEEEEEEEETTEEEEEEEEEEECCCS-CHHHHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHH T ss_pred EEEEECCCCCCEEEEEEEEECCEEEEEEEEEEECCCC-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHH T ss_conf 8999843558568999995398789998668977998-879999999999999997139735369898862388899999 Q ss_pred HHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHH Q ss_conf 99999999999860161775260677765316888899999999999628899999556789999999764168756 Q gi|254780554|r 86 GQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAYHANSGY 162 (169) Q Consensus 86 g~arGvi~l~~~~~~i~v~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~~~~~D~aDAlAiAl~h~~~~~~~~ 162 (169) ||+||++++++.++++|++||+|++|||++||+|+|+|+||+.||+++|++.+++.+|++||+|+|+||+|+.+|+. T Consensus 81 ~~a~G~i~~~~~~~~i~i~~~~P~~vKk~vtG~G~A~K~qV~~mv~~~l~l~~~~~~D~aDAlAial~h~~~~~~~~ 157 (158) T 1hjr_A 81 GQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAM 157 (158) T ss_dssp HHHHHHHHHHHHTTTCCEEEEEHHHHHHHHTSSSSCCHHHHHHHHHHHTTCCCCCSSCTHHHHHHHHHHHHTTSSSC T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 99999999999985996013688999999857997799999999999819999999987999999999997623446 No 2 >1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1 c.55.3.7 Probab=98.28 E-value=5.5e-05 Score=50.32 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=87.6 Q ss_pred CCCCEEEEECCCCCEEEEEEEEEECC-EEEEEEEEEEECCCC----------CCHHHHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 98806999978887205899997199-689998336873889----------9988899999998999862279627788 Q gi|254780554|r 2 RKSIRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVR----------QSLAFRLCQLYEGLTDVIKNWRPEEAAV 70 (169) Q Consensus 2 ~~~MrILGIDPGl~~tG~avie~~~~-~~~li~~g~I~t~~~----------~~~~~Rl~~I~~~l~~ii~~~~Pd~vai 70 (169) +..+|||+||.|+.+..|++++...+ ...+.++.++..... .+...-...++.-++.++..++||.|.| T Consensus 37 ~~~~rILSIDvGIKNLAyc~l~~~~~~~~~I~~W~~i~L~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~d~vlI 116 (258) T 1kcf_A 37 YPTSRVLGIDLGIKNFSYCFASQNEDSKVIIHNWSVENLTEKNGLDIQWTEDFQPSSMADLSIQLFNTLHEKFNPHVILM 116 (258) T ss_dssp CCCSSEEEEEECSTTEEEEEEEECTTSCEEEEEEEEECTTSCCTTCCCCCCCCSHHHHHHHHHHHHHHHHHHHCCSEEEE T ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 89982789982743001235612789875578754621255667553135567879999999999998640047998997 Q ss_pred EHHHHCCCHHH----HHHHHHHHHHHHHHHHHC---------CC-CEEEECHHHHHHHHCC--------CCCCCH-HHHH Q ss_conf 50332024124----788999999999999860---------16-1775260677765316--------888899-9999 Q gi|254780554|r 71 EQVFVNKDAVA----TLKLGQARAIAILSPALA---------RI-PVSEYAPNTIKKAVIG--------VGHGDK-KQIH 127 (169) Q Consensus 71 E~~F~~~n~~t----~~~lg~arGvi~l~~~~~---------~i-~v~ey~P~~vKkavtG--------~G~A~K-eqV~ 127 (169) |.+-+..+..+ ++++....+.+....... .. -|....|..+.++-.. ..+-.+ +-+. T Consensus 117 E~Qr~Rs~~~~v~~~~lr~~~le~mL~a~~~~~~~~~~~~~~~~~~v~~~~p~~v~~y~~~~~~~~~~~~~Kk~~i~l~~ 196 (258) T 1kcf_A 117 ERQRYRSGIATIPEWTLRVNMLESMLYALHYAEKRNSIEQKIQYPFLLSLSPKSTYSYWASVLNTKASFSKKKSRVQMVK 196 (258) T ss_dssp EECCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHC-------CCEEEECCHHHHHHHHHHHHC-------CCCHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHHHH T ss_conf 87766567752137889999999999999998613432334664358875756667874234565443420199999999 Q ss_pred HHHHH-------------HC--CCCCCCCCCHHHHHHHHHHH Q ss_conf 99999-------------62--88999995567899999997 Q gi|254780554|r 128 MMLKM-------------LM--PESFFKGKDAADALAIAVCH 154 (169) Q Consensus 128 ~mV~~-------------ll--~~~~~~~~D~aDAlAiAl~h 154 (169) ..+.. .. -....|-||.||++=-|+.- T Consensus 197 ~~L~~~~~~~~~~~~~~~~~~~f~~~kKkDDLADslLQ~la~ 238 (258) T 1kcf_A 197 ELIDGQKILFENEEALYKWNNGSRVEFKKDDMADSALIASGW 238 (258) T ss_dssp HHHHTTSEEESSHHHHHHHHHCCSTTTHHHHHHHHHHHHHHH T ss_pred HHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHH T ss_conf 998425334677167888987447777634678799999999 No 3 >1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8 Probab=98.22 E-value=4.2e-06 Score=57.21 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=66.8 Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHH Q ss_conf 80699997888720589999719968999833687388999888999999989998622796277885033202412478 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATL 83 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~ 83 (169) +|||||||+|..++|+||-|..+.-...+. ++..+.... ....+.|.+++++++|+.++|=-|.--.+..+. T Consensus 2 ~MriLgiD~G~kriGvAisD~~~~~a~pl~--~i~~~~~~~-----~~~~~~i~~ii~e~~i~~iViGlP~~~dg~~~~- 73 (150) T 1vhx_A 2 SLRILGLDLGTKTLGVALSDEMGWTAQGIE--TIKINEAEG-----DYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGP- 73 (150) T ss_dssp CEEEEEEEECSSEEEEEEECTTSSSEEEEE--EEECBGGGT-----BCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCH- T ss_pred CCEEEEEECCCCEEEEEEECCCCCCCCCCE--EEECCCCCC-----HHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHH- T ss_conf 860999952899799999569988335601--133223452-----479999999999839996998578466887548- Q ss_pred HHHHHHHHHHHHHHHCCCCEEEE----CHHHHHHHHCCCC Q ss_conf 89999999999998601617752----6067776531688 Q gi|254780554|r 84 KLGQARAIAILSPALARIPVSEY----APNTIKKAVIGVG 119 (169) Q Consensus 84 ~lg~arGvi~l~~~~~~i~v~ey----~P~~vKkavtG~G 119 (169) ..-+++--+-......++||+.+ +..+.+...-..| T Consensus 74 ~~~~v~~f~~~l~~~~~l~V~~~DEr~TS~~A~~~l~~~~ 113 (150) T 1vhx_A 74 RGEASQTFAKVLETTYNVPVVLWDERLTTMAAEKMLIAAD 113 (150) T ss_dssp HHHHHHHHHHHHHHHHCSCEEEECCSSCHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCC T ss_conf 8999999999626588975688678865999999999769 No 4 >1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A Probab=98.01 E-value=3.6e-05 Score=51.46 Aligned_cols=104 Identities=14% Similarity=0.129 Sum_probs=64.5 Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHH Q ss_conf 80699997888720589999719968999833687388999888999999989998622796277885033202412478 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATL 83 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~ 83 (169) +-||||||+|+.++|+||-|..+.-... .+++..+.... ..+.|.+++++|+|+.++|--|+-..+..+.. T Consensus 2 ~griLgiD~G~kriGlAisd~~~~~a~p--l~~i~~~~~~~-------~~~~l~~~i~e~~~~~iVvG~P~~~~g~~~~~ 72 (138) T 1nu0_A 2 SGTLMAFDFGTKSIGVAVGQRITGTARP--LPAIKAQDGTP-------DWNIIERLLKEWQPDEIIVGLPLNMDGTEQPL 72 (138) T ss_dssp CCEEEEEECCSSEEEEEEEETTTTEEEE--EEEEEEETTEE-------CHHHHHHHHHHHCCSEEEEEEEECTTSCBCHH T ss_pred CCCEEEEEECCCEEEEEEECCCCCCEEC--CEEEECCCCHH-------HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHH T ss_conf 9768999937887999994799884304--18898277468-------99999998630487299955545778984889 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEE----CHHHHHHHHCC Q ss_conf 89999999999998601617752----60677765316 Q gi|254780554|r 84 KLGQARAIAILSPALARIPVSEY----APNTIKKAVIG 117 (169) Q Consensus 84 ~lg~arGvi~l~~~~~~i~v~ey----~P~~vKkavtG 117 (169) .-+++--+-....+.++||+.+ +..+.+....- T Consensus 73 -~~~v~~F~~~L~~~~~i~v~~~DErlTS~eA~~~l~~ 109 (138) T 1nu0_A 73 -TARARKFANRIHGRFGVEVKLHDERLSTVEARSGLFE 109 (138) T ss_dssp -HHHHHHHHHHHHHHHCCCEEEEEEECCCCCC------ T ss_pred -HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH T ss_conf -9999999999998509987996076449999999997 No 5 >1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8 Probab=97.66 E-value=5e-05 Score=50.59 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=54.9 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCC---CHHH Q ss_conf 0699997888720589999719968999833687388999888999999989998622796277885033202---4124 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK---DAVA 81 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~---n~~t 81 (169) |||||||.|..++|.|+-|..+.-... .++|... + .....+.|.+++++|+|+.++|=-|.--. +.++ T Consensus 1 MriLglD~G~kriGvAisd~~~~~A~p--l~~i~~~---~----~~~~~~~l~~li~e~~i~~iVvGlP~~~dG~~~~~~ 71 (98) T 1iv0_A 1 MRVGALDVGEARIGLAVGEEGVPLASG--RGYLVRK---T----LEEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQA 71 (98) T ss_dssp CCEEEEEESSSEEEEEEECSCCSSCCC--EEEEECC---C----HHHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCS T ss_pred CCEEEEEECCCEEEEEEECCCCCEEEC--EEEEECC---C----CHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHH T ss_conf 929999808998999992599987817--7889825---8----568999999999971857499158977899919899 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 7889999999999998601617752 Q gi|254780554|r 82 TLKLGQARAIAILSPALARIPVSEY 106 (169) Q Consensus 82 ~~~lg~arGvi~l~~~~~~i~v~ey 106 (169) . .+ +--+-. +...++||..+ T Consensus 72 ~-~v---~~f~~~-L~~~~~pv~~~ 91 (98) T 1iv0_A 72 G-KV---LPLVEA-LRARGVEVELW 91 (98) T ss_dssp S-TT---HHHHHH-HHHTTCEEEEE T ss_pred H-HH---HHHHHH-HHHCCCCEEEE T ss_conf 9-99---999999-86379999998 No 6 >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A Probab=96.70 E-value=0.002 Score=40.67 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=42.4 Q ss_pred CEEEEECCCCC-EEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 06999978887-20589999719968999833687388999888999999989998622796277885 Q gi|254780554|r 5 IRIIGIDPGLR-RTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVE 71 (169) Q Consensus 5 MrILGIDPGl~-~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE 71 (169) -++||+|||.+ .|-|+++|.+| +++++++|-+....... ..-...|.+++.+|+|+.|+|= T Consensus 329 ~~vlg~dPg~r~g~k~a~vD~~G---~vld~~~iyp~~~~~~~---~~a~~~l~~li~~~~~~vIaIG 390 (785) T 3bzc_A 329 RATLGLDPGLRTGVKVAVVDATG---KLLDTATVYPHAPKNQW---DQTLAVLAALCAKHQVELIAIG 390 (785) T ss_dssp CCEEEEECCSSSCEEEEEECTTS---CEEEEEEECCSGGGCCH---HHHHHHHHHHHHHHTCCEEEEE T ss_pred CCEEEECCCCCCCEEEEEECCCC---CEEEEEEECCCCCCCCH---HHHHHHHHHHHHHCCCCEEEEC T ss_conf 82355478987735999998999---87876797468974235---9999999999998299689976 No 7 >2gel_A Putative GRAM negative resuscitation promoting factor; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium LT2} PDB: 2gem_A 1okj_A Probab=96.22 E-value=0.037 Score=32.91 Aligned_cols=95 Identities=11% Similarity=0.222 Sum_probs=51.3 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCC--CHHHH Q ss_conf 0699997888720589999719968999833687388999888999999989998622796277885033202--41247 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK--DAVAT 82 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~--n~~t~ 82 (169) |+||+||-++..+..|+.+ +++.. .. .... ...+.+.|.. .+.+++++.+...=-+..+.++. ..-|. T Consensus 1 M~iLaIdTS~~~~sval~~--~~~i~--~~--~~~~-~r~hs~~L~~---~i~~~L~~~~i~~~did~i~v~~GPGSFTG 70 (231) T 2gel_A 1 MRILAIDTATEACSVALWN--NGTIN--AH--FELC-PREHTQRILP---MVQEILAASGASLNEIDALAFGRGPGSFTG 70 (231) T ss_dssp CEEEEEECSSSEEEEEEEE--TTEEE--EE--EEEC-CSCCHHHHHH---HHHHHHHHTTCCGGGCSEEEEECCSSCHHH T ss_pred CCEEEEECCCCCEEEEEEE--CCEEE--EE--EEEC-CHHHHHHHHH---HHHHHHHHCHHHHHHHCEEEEECCCCCHHH T ss_conf 9899999377271999999--99999--99--9975-5899999999---999998755021233107999758651375 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECHHHH Q ss_conf 88999999999999860161775260677 Q gi|254780554|r 83 LKLGQARAIAILSPALARIPVSEYAPNTI 111 (169) Q Consensus 83 ~~lg~arGvi~l~~~~~~i~v~ey~P~~v 111 (169) +.+|-+-.-.+ +.-.++|++.++..++ T Consensus 71 lRig~s~akgl--a~~~~ip~igvssl~~ 97 (231) T 2gel_A 71 VRIGIGIAQGL--ALGANLPMIGVSTLAT 97 (231) T ss_dssp HHHHHHHHHHH--HHTTTCCEEEECHHHH T ss_pred HHHHHHHHHHH--HHHHCCCCCCCCHHHH T ss_conf 88999999999--9974888675276999 No 8 >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* Probab=96.05 E-value=0.029 Score=33.59 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=50.3 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEEC-CCCC----------CHHHHHHHHHHHHHHHHHC-----CCCCEE Q ss_conf 06999978887205899997199689998336873-8899----------9888999999989998622-----796277 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-CVRQ----------SLAFRLCQLYEGLTDVIKN-----WRPEEA 68 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t-~~~~----------~~~~Rl~~I~~~l~~ii~~-----~~Pd~v 68 (169) |.|||||-+...|+.||+|.. + ++ +.++.+ ..+. .+.+.|..+ +++++++ -.+|.+ T Consensus 1 M~iLgIeTScd~tsvAi~~~~--~--il-~~~~~~~~~~~GGvvP~~A~r~H~~~l~~~---i~~~l~~a~i~~~~id~i 72 (330) T 2ivn_A 1 MLALGIEGTAHTLGIGIVSED--K--VL-ANVFDTLTTEKGGIHPKEAAEHHARLMKPL---LRKALSEAGVSLDDIDVI 72 (330) T ss_dssp CCEEEEECSSSEEEEEEECSS--C--EE-EEEEEECCCTTCCCCHHHHHHHHHHHHHHH---HHHHHHHHTCCTTTCCEE T ss_pred CEEEEEECCCHHHEEEEEECC--E--EE-EEEEEEEECCCCCCCHHHHHHHHHHHHHHH---HHHHHHHCCCCHHHCCEE T ss_conf 909999836440289999899--9--99-998883126779858589999999999999---999999849985568668 Q ss_pred EEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHH Q ss_conf 885033202412478899999999999986016177526067 Q gi|254780554|r 69 AVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNT 110 (169) Q Consensus 69 aiE~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~~ 110 (169) |+-. +-..-+.+.+|..- +.-.+...++|++.+.-.+ T Consensus 73 avt~---gPG~~~~L~vG~~~--Ak~la~~~~~P~i~v~Hl~ 109 (330) T 2ivn_A 73 AFSQ---GPGLGPALRVVATA--ARALAVKYRKPIVGVNHCI 109 (330) T ss_dssp EEEE---ESSCHHHHHHHHHH--HHHHHHHTTCCEEEEEHHH T ss_pred EEEC---CCCCCCCHHHHHHH--HHHHHHHCCCCEEEECCHH T ss_conf 8812---89841026999999--9999986087637626399 No 9 >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} Probab=95.85 E-value=0.052 Score=31.97 Aligned_cols=96 Identities=8% Similarity=0.119 Sum_probs=49.4 Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCC----------CHHHHHHHHHHHHHHHHHCC-----CCCE Q ss_conf 88069999788872058999971996899983368738899----------98889999999899986227-----9627 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ----------SLAFRLCQLYEGLTDVIKNW-----RPEE 67 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~----------~~~~Rl~~I~~~l~~ii~~~-----~Pd~ 67 (169) .+|+|||||-+-..|+.||+|. + +. +.........+. .+.+.|.. -+++++++. .+|. T Consensus 4 ~~m~iLgIeTScd~tsvaiv~~-~-~i--l~~~~~~~~~~~GGvvP~~A~r~H~~~l~~---~i~~~l~~a~i~~~~id~ 76 (334) T 3eno_A 4 DPMIVLGLEGTAHTISCGIIDE-S-RI--LAMESSMYRPKTGGIRPLDAAVHHSEVIDT---VISRALEKAKISIHDIDL 76 (334) T ss_dssp CCCEEEEEECSSSEEEEEEEES-S-CC--CEEEEEECCCSSCSCCHHHHHHHHHHHHHH---HHHHHHHHHTCCGGGCCE T ss_pred CCCEEEEEECCHHHEEEEEEEC-C-EE--EEEEEEEEECCCCCCCHHHHHHHHHHHHHH---HHHHHHHHCCCCHHHCCE T ss_conf 7757999984604208999989-9-88--899888710787988869999999999999---999999974986433026 Q ss_pred EEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHH Q ss_conf 7885033202412478899999999999986016177526067 Q gi|254780554|r 68 AAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNT 110 (169) Q Consensus 68 vaiE~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~~ 110 (169) +++-. +-.-...+.+|.. .....+...++|++.+.-.+ T Consensus 77 ia~t~---gPGl~~~l~vG~~--~Ak~la~~~~~Pli~v~Hle 114 (334) T 3eno_A 77 IGFSM---GPGLAPSLRVTAT--AARTISVLTGKPIIGVNHPL 114 (334) T ss_dssp EEEEC---SSSCHHHHHHHHH--HHHHHHHHHTCCCEEECHHH T ss_pred EEECC---CCCCCCCCCHHHH--HHHHHHHHCCCCCCCCCHHH T ss_conf 88435---7873224206799--99998874267845235188 No 10 >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* Probab=95.64 E-value=0.13 Score=29.58 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=51.9 Q ss_pred CCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCC----------CCHHHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 98806999978887205899997199689998336873889----------99888999999989998622796277885 Q gi|254780554|r 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR----------QSLAFRLCQLYEGLTDVIKNWRPEEAAVE 71 (169) Q Consensus 2 ~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~----------~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE 71 (169) ..+|.|||||-+-.-|+.||++.++. ++..-.+..... ..+.+.|..+.++..+-++...+|.|++- T Consensus 3 ~~~m~vLgIETScddTs~Aiv~~~~~---il~~~~~~~~~~~gGvvPe~A~r~H~~~l~~li~~al~~~~~~~id~IavT 79 (540) T 3en9_A 3 MDPMICLGLEGTAEKTGVGIVTSDGE---VLFNKTIMYKPPKQGINPREAADHHAETFPKLIKEAFEVVDKNEIDLIAFS 79 (540) T ss_dssp CCSCEEEEEECSSSEEEEEEEETTSC---EEEEEEEECCCCCSSSSCCCHHHHHHHHHHHHHHHHHHHSCGGGCCEEEEE T ss_pred CCCCEEEEEECCCCCEEEEEEECCCE---EEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE T ss_conf 77737999986666607899968980---999867874389899890899999999999999999975895458889995 Q ss_pred H-HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHH Q ss_conf 0-3320241247889999999999998601617752606 Q gi|254780554|r 72 Q-VFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPN 109 (169) Q Consensus 72 ~-~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~ 109 (169) . | .-...+.+|..- ..-.+...++|++.+.-. T Consensus 80 ~gP----Gl~g~L~vG~~~--Ak~La~~~~iPli~V~Hl 112 (540) T 3en9_A 80 QGP----GLGPSLRVTATV--ARTLSLTLKKPIIGVNHC 112 (540) T ss_dssp EES----SCHHHHHHHHHH--HHHHHHHHTCCEEEEEHH T ss_pred CCC----CCHHHHHHHHHH--HHHHHHHCCCCCCCCCHH T ss_conf 799----734638999999--999999639981563389 No 11 >2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermotoga maritima MSB8} SCOP: c.55.1.9 c.55.1.9 Probab=95.57 E-value=0.059 Score=31.63 Aligned_cols=96 Identities=16% Similarity=0.203 Sum_probs=52.8 Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCC--HH Q ss_conf 8806999978887205899997199689998336873889998889999999899986227962778850332024--12 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKD--AV 80 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n--~~ 80 (169) +-|+||+||-+. ++..|+.+ ++.+. +. ... ....+.+.| ...+.+++++.+.+.--|+.++++.. .- T Consensus 11 ~~M~iLaiDTS~-~~sval~~--~~~i~--~~-~~~--~~r~hse~L---~~~i~~~L~~~~l~~~did~i~v~~GPGsF 79 (218) T 2a6a_A 11 HHMNVLALDTSQ-RIRIGLRK--GEDLF--EI-SYT--GEKKHAEIL---PVVVKKLLDELDLKVKDLDVVGVGIGPGGL 79 (218) T ss_dssp --CEEEEEECSS-SEEEEEEE--TTEEE--EE-EEE--SCGGGGGHH---HHHHHHHHHHHTCCGGGCSEEEEECCSSCH T ss_pred CCCEEEEEECCC-CCEEEEEE--CCEEE--EE-EEC--CCHHHHHHH---HHHHHHHHHHCCCCHHHCCEEEEECCCCCH T ss_conf 546077798277-64799998--99999--99-832--666899999---999999999859997886389995689808 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECHHHH Q ss_conf 4788999999999999860161775260677 Q gi|254780554|r 81 ATLKLGQARAIAILSPALARIPVSEYAPNTI 111 (169) Q Consensus 81 t~~~lg~arGvi~l~~~~~~i~v~ey~P~~v 111 (169) |.+.+|-+- +.-.+.-.++|++.++.-++ T Consensus 80 TGlRIg~a~--akgla~~~~ipl~~vssl~~ 108 (218) T 2a6a_A 80 TGLRVGIAT--VVGLVSPYDIPVAPLNSFEM 108 (218) T ss_dssp HHHHHHHHH--HHHHHGGGTCCEEEECHHHH T ss_pred HHHHHHHHH--HHHHHHHCCCCCCCCCHHHH T ss_conf 889899999--99999864998554577999 No 12 >2gup_A ROK family protein; sugar kinase, APC80695, sucrose, structural genomics, PSI, protein structure initiative; HET: SUC; 2.01A {Streptococcus pneumoniae TIGR4} SCOP: c.55.1.10 c.55.1.10 Probab=95.01 E-value=0.049 Score=32.13 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=43.4 Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 880699997888720589999719968999833687388999888999999989998622796277885 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVE 71 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE 71 (169) -+|+|+|||-|=|++=+++++..++ .++...+.|+ + .+..+...+.+.+.+++...++|= T Consensus 2 ~~~~~~~iDiGGT~ir~~l~d~~g~---ii~~~~~~t~--~----~~~~~~~~i~~~~~~~~i~~Igia 61 (292) T 2gup_A 2 NAMTIATIDIGGTGIKFASLTPDGK---ILDKTSISTP--E----NLEDLLAWLDQRLSEQDYSGIAMS 61 (292) T ss_dssp --CCEEEEEEETTEEEEEEECTTCC---EEEEEEECCC--S----SHHHHHHHHHHHHTTSCCSEEEEE T ss_pred CCCEEEEEEECCHHEEEEEECCCCC---EEEEEEEECC--C----CHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 9888999997702469999918996---9999997287--6----599999999998665278679996 No 13 >1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, structural genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum atcc 12472} SCOP: c.55.1.5 c.55.1.5 Probab=94.80 E-value=0.073 Score=31.08 Aligned_cols=61 Identities=21% Similarity=0.208 Sum_probs=43.7 Q ss_pred CCCCCE-EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 998806-9999788872058999971996899983368738-899988899999998999862279 Q gi|254780554|r 1 MRKSIR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-VRQSLAFRLCQLYEGLTDVIKNWR 64 (169) Q Consensus 1 ~~~~Mr-ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-~~~~~~~Rl~~I~~~l~~ii~~~~ 64 (169) |.++|| +||||-|-+++=++++|.+++ .+......+. ...+..+=+..|.+.+++.+++.. T Consensus 6 ~~~~m~y~iGIDiGgT~i~~~l~d~~G~---il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~g 68 (305) T 1zc6_A 6 MNPSIRYLIGVDGGGTGTRIRLHASDGT---PLAMAEGGASALSQGIAKSWQAVLSTLEAAFQQAG 68 (305) T ss_dssp --CCCCEEEEEEECSSCEEEEEEETTCC---EEEEEEESCCCGGGCHHHHHHHHHHHHHHHHHHTT T ss_pred CCCCCCEEEEEECCCCEEEEEEECCCCC---EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 8988868999992810089999979998---99999966998566999999999999999999749 No 14 >2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10 Probab=94.66 E-value=0.065 Score=31.41 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=41.0 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 069999788872058999971996899983368738899988899999998999862279627 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~ 67 (169) |-|||||-|-+++=++++|..|+- +....+.++.... ...+.+.+.+++++++.+. T Consensus 1 m~~igiD~GGT~~~~~l~d~~G~i---l~~~~~~~~~~~~----~~~i~~~i~~~~~~~~~~~ 56 (289) T 2aa4_A 1 MTTLAIDIGGTKLAAALIGADGQI---RDRRELPTPASQT----PEALRDALSALVSPLQAHA 56 (289) T ss_dssp CCEEEEEECSSEEEEEEECTTCCE---EEEEEEECCSSCC----HHHHHHHHHHHHTTTGGGC T ss_pred CCEEEEEECCCCEEEEEECCCCCE---EEEEEEECCCCCC----HHHHHHHHHHHHHHHHHHC T ss_conf 969999988003899999799969---9999997898878----9999999999999988655 No 15 >2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis V583} Probab=94.26 E-value=0.12 Score=29.86 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=44.4 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 699997888720589999719968999833687388999888999999989998622796 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~P 65 (169) +|||||-|-++|=++++|..++ ++....+.++...+...-+..|.+.+..+++++.. T Consensus 7 ~vLgiD~GgT~~~~~l~d~~G~---il~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~ 63 (326) T 2qm1_A 7 KIIGIDLGGTTIKFAILTTDGV---VQQKWSIETNILEDGKHIVPSIIESIRHRIDLYNM 63 (326) T ss_dssp EEEEEEECSSEEEEEEEETTCC---EEEEEEEECCCTTTTTTHHHHHHHHHHHHHHHTTC T ss_pred EEEEEEECCCEEEEEEECCCCC---EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 5999998734289999939997---99999971798889899999999999999997157 No 16 >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuclease-H fold, sugar kinase, glucose, conformational change; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* Probab=93.02 E-value=0.073 Score=31.09 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=38.2 Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC---CCEEEEE Q ss_conf 8069999788872058999971996899983368738899988899999998999862279---6277885 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR---PEEAAVE 71 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~---Pd~vaiE 71 (169) +|.+||||-|-++|=++++|.+++- +... +.++......-+..+.+.+.+++++.. ++.+.+- T Consensus 1 mm~~iGIDiGgT~~~~~l~d~~G~i---l~~~--~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~gig 66 (299) T 2e2o_A 1 MMIIVGVDAGGTKTKAVAYDCEGNF---IGEG--SSGPGNYHNVGLTRAIENIKEAVKIAAKGEADVVGMG 66 (299) T ss_dssp CCCEEEEEECSSCEEEEEECTTSCE---EEEE--EESCCCHHHHCHHHHHHHHHHHHHHHHTSCCSEEEEE T ss_pred CCEEEEEEECHHHEEEEEECCCCCE---EEEE--EECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 9299999937003799999499989---9999--9278996522099999999999998558985489870 No 17 >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus VF5} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Probab=92.13 E-value=0.66 Score=25.17 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=57.5 Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCH----------HHHHHHHHHHHHHHHHCCCCCEE-EEE Q ss_conf 8806999978887205899997199689998336873889998----------88999999989998622796277-885 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSL----------AFRLCQLYEGLTDVIKNWRPEEA-AVE 71 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~----------~~Rl~~I~~~l~~ii~~~~Pd~v-aiE 71 (169) ..|||=.||-|++.+=..|.+..++++..+..-...+.-.... -+|+...-..+.+++++|+++.+ ++= T Consensus 10 ~~mriAvIDIGSNsirl~I~~~~~~~~~~l~~~~~~~rLg~~~~~~g~l~~~~i~~~~~~L~~f~~~~~~~~v~~i~~vA 89 (315) T 1t6c_A 10 PIMRVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKAVA 89 (315) T ss_dssp CCEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 74589999976440899999825997302411157875212653159809999999999999999998750746199970 Q ss_pred HHHH--CCCHHHH Q ss_conf 0332--0241247 Q gi|254780554|r 72 QVFV--NKDAVAT 82 (169) Q Consensus 72 ~~F~--~~n~~t~ 82 (169) .--+ .+|.+.. T Consensus 90 TsA~R~A~N~~~~ 102 (315) T 1t6c_A 90 TEAIRRAKNAEEF 102 (315) T ss_dssp CHHHHTSTTHHHH T ss_pred HHHHHHCCCHHHH T ss_conf 2998847566599 No 18 >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 Probab=91.87 E-value=0.67 Score=25.14 Aligned_cols=51 Identities=24% Similarity=0.239 Sum_probs=30.5 Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHH Q ss_conf 80699997888720589999719968999833687388999888999999989998 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~i 59 (169) .|.+||||-|++.|-.+++|. +++ ++.+...++....... ...+.+.|.+. T Consensus 2 ~m~~lGID~GsT~tk~vv~de-~~~--i~~~~~~~~~~~~~~~--~~~i~~~l~~~ 52 (270) T 1hux_A 2 SIYTLGIDVGSTASKCIILKD-GKE--IVAKSLVAVGTGTSGP--ARSISEVLENA 52 (270) T ss_dssp CCEEEEEEECSSEEEEEEEET-TTE--EEEEEEEECCSSCCHH--HHHHHHHHHHH T ss_pred CCEEEEEEECHHHEEEEEEEC-CCE--EEEEEEEECCCCHHHH--HHHHHHHHHHC T ss_conf 828999994813699999968-994--9999997358984789--99999999970 No 19 >3eo3_A Bifunctional UDP-N-acetylglucosamine 2- epimerase/N-acetylmannosamine kinase; non-protein kinase, sialic acid biosynthesis; 2.84A {Homo sapiens} Probab=91.78 E-value=0.52 Score=25.84 Aligned_cols=58 Identities=12% Similarity=0.124 Sum_probs=41.3 Q ss_pred CCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 988069999788872058999971996899983368738899988899999998999862279 Q gi|254780554|r 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64 (169) Q Consensus 2 ~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~ 64 (169) +.+|..||||-|=+++=++++|..+.-+ ...... ...+..+.+..|.+.+.+.+.+.. T Consensus 17 ~~~~~~lGIDiGGT~~~~al~d~~G~vl---~~~~~~--~~~~~~~~~~~i~~~i~~~~~~~~ 74 (333) T 3eo3_A 17 QGTLSALAVDLGGTNLRVAIVSMKGEIV---KKYTQF--NPKTYEERINLILQMCVEAAAEAV 74 (333) T ss_dssp --CCEEEEEEECSSEEEEEEEETTSCEE---EEEEEE--CCSSHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCEEEEEEECCCEEEEEEECCCCCEE---EEEEEC--CCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 8885499999771139999995999799---999968--999978999999999999999861 No 20 >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* Probab=90.92 E-value=0.89 Score=24.38 Aligned_cols=61 Identities=23% Similarity=0.219 Sum_probs=33.7 Q ss_pred CCE-EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-----CC---CCHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 806-9999788872058999971996899983368738-----89---9988899999998999862279627 Q gi|254780554|r 4 SIR-IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-----VR---QSLAFRLCQLYEGLTDVIKNWRPEE 67 (169) Q Consensus 4 ~Mr-ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-----~~---~~~~~Rl~~I~~~l~~ii~~~~Pd~ 67 (169) .|+ |||||-|++++=.+++|.+++- +.......+ .. .+..+=...+.+.+.++.++...+. T Consensus 2 ~mkYvlgIDiGTts~Ka~l~d~~g~i---v~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~i 71 (504) T 3ll3_A 2 SLKYIIGMDVGTTATKGVLYDINGKA---VASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQKIDGKI 71 (504) T ss_dssp CCEEEEEEEECSSEEEEEEEETTSCE---EEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTCSSEE T ss_pred CCCEEEEEECCCCCEEEEEECCCCCE---EEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCE T ss_conf 97789999753444276699189989---99999847840699996247999999999999999996378870 No 21 >1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10 Probab=90.88 E-value=0.9 Score=24.36 Aligned_cols=62 Identities=18% Similarity=0.070 Sum_probs=38.8 Q ss_pred CCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 988069999788872058999971996899983368738899988899999998999862279 Q gi|254780554|r 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64 (169) Q Consensus 2 ~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~ 64 (169) +++..|||||-|-+++=++++|.+++... .+.-.+.|+...+...=+..|.+-+.++...+. T Consensus 9 ~~~~~viGiDiGGT~i~~~l~d~~~~~i~-~~~~~~~t~~~~~~~~i~~~i~~~i~~l~~~~~ 70 (267) T 1woq_A 9 HKNAPLIGIDIGGTGIKGGIVDLKKGKLL-GERFRVPTPQPATPESVAEAVALVVAELSARPE 70 (267) T ss_dssp --CCCEEEEEECSSEEEEEEEETTTTEEE-EEEEEEECCSSCCHHHHHHHHHHHHHHHHTSTT T ss_pred CCCCCEEEEEECCCEEEEEEEECCCCEEE-EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 89998999998776599999989999899-999996789999999999999999999875026 No 22 >3lm2_A Putative kinase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, transferase; HET: MSE; 1.70A {Agrobacterium tumefaciens} Probab=89.83 E-value=0.39 Score=26.59 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=43.1 Q ss_pred CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEH Q ss_conf 998806999978887205899997199689998336873889998889999999899986227962778850 Q gi|254780554|r 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQ 72 (169) Q Consensus 1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~ 72 (169) |..+..|||||-|-+++-+++++..+ +. .+.++...+. ..+.+.+.++++++.++.++|=- T Consensus 2 m~~~~~vlgiDIGGT~i~~~l~d~~~-~~------~~~t~~~~~~----~~~~~~i~~~i~~~~~~~igi~~ 62 (226) T 3lm2_A 2 MAEDQTVLAIDIGGSHVKIGLSTDGE-ER------KVESGKTMTG----PEMVAAVTAMAKDMTYDVIAMGY 62 (226) T ss_dssp CGGGCCEEEEEECSSEEEEEETTTCC-EE------EEECCTTCCH----HHHHHHHHHHTTTCCCSEEEEEE T ss_pred CCCCCEEEEEEECCCEEEEEEEECCC-CE------EEECCCCCCH----HHHHHHHHHHHHHHCCCCCEEEC T ss_conf 98788599999788569999997998-68------9965899997----99999999999750323518951 No 23 >1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, actin) superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* Probab=87.66 E-value=1.5 Score=22.90 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=52.0 Q ss_pred CCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCC--------CC--HHHHHHHHHHHHHHHHHCCCCC-EEEE Q ss_conf 98806999978887205899997199689998336873889--------99--8889999999899986227962-7788 Q gi|254780554|r 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVR--------QS--LAFRLCQLYEGLTDVIKNWRPE-EAAV 70 (169) Q Consensus 2 ~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~--------~~--~~~Rl~~I~~~l~~ii~~~~Pd-~vai 70 (169) .++||+=.||-|+++.=+.|.+..++.++.++.-...+.-. .+ --+|....-.++.++++.|+++ ..++ T Consensus 8 ~~~~~~AvIDiGSNSirl~I~~~~~~~~~~i~~~k~~vrLg~~l~~~g~l~~~~i~~~~~~L~~f~~~~~~~~v~~~~~v 87 (513) T 1u6z_A 8 PRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPASVCIV 87 (513) T ss_dssp ----CEEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTCCBCHHHHHHHHHHHHHHHHHTTTCCGGGEEEE T ss_pred CCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 99887999997555089999995599720200037897432465546991999999999999999999986799889998 Q ss_pred E Q ss_conf 5 Q gi|254780554|r 71 E 71 (169) Q Consensus 71 E 71 (169) = T Consensus 88 A 88 (513) T 1u6z_A 88 G 88 (513) T ss_dssp E T ss_pred E T ss_conf 1 No 24 >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, SGC, transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 Probab=86.98 E-value=1.1 Score=23.74 Aligned_cols=52 Identities=10% Similarity=0.143 Sum_probs=34.2 Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 880699997888720589999719968999833687388999888999999989998622796277885 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVE 71 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE 71 (169) ..|| +|||-|-|++=++++|..+.. +.. ..+ ..+ +.+.+++++++++.+.+= T Consensus 19 ~~m~-IGIDiGGT~ik~~~~d~~g~i---~~~--~~~-------~~~----~~i~~~i~~~~i~~Igi~ 70 (287) T 2ews_A 19 SHMK-VGIDAGGTLIKIVQEQDNQRT---FKT--ELT-------KNI----DQVVEWLNQQQIEKLCLT 70 (287) T ss_dssp --CE-EEEEECSSEEEEEEECSSCEE---EEE--EEG-------GGH----HHHHHHHHTSCCSEEEEE T ss_pred CCEE-EEEEECHHHEEEEEEECCCCE---EEE--EEH-------HHH----HHHHHHHHHHCCCEEEEE T ss_conf 9779-999987355899999099989---998--605-------369----999999876068889998 No 25 >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide- binding, phosphoprotein, polymorphism; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3fzh_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 1ngh_A* 1ngd_A* 1ngf_A* 1bup_A* 1nga_A* ... Probab=86.15 E-value=0.41 Score=26.48 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=15.0 Q ss_pred CCEEEEECCCCCEEEEEEEE Q ss_conf 80699997888720589999 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVD 23 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie 23 (169) +|.|+|||-|++++..|+.+ T Consensus 22 ~m~viGIDfGTt~s~va~~~ 41 (404) T 3i33_A 22 SMPAIGIDLGTTYSCVGVFQ 41 (404) T ss_dssp -CCCEEEEECSSEEEEEEEE T ss_pred CCCEEEEECCCCCEEEEEEE T ss_conf 99899999281368999998 No 26 >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Probab=85.39 E-value=2 Score=22.16 Aligned_cols=69 Identities=14% Similarity=0.071 Sum_probs=37.5 Q ss_pred CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCC--CCCHHHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 99880699997888720589999719968999833687388--999888999999989998622796277885 Q gi|254780554|r 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV--RQSLAFRLCQLYEGLTDVIKNWRPEEAAVE 71 (169) Q Consensus 1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~--~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE 71 (169) |...--|+|||-|++++=.+++|.++++. +..+....+. ..+..+=...+.+.++++....++..+++= T Consensus 1 m~~~~lv~GiD~GTss~Ka~l~d~~~g~i--~~~~~~~~p~~~eqd~~~~~~~~~~~~~~~~~~~~I~aIgit 71 (515) T 3i8b_A 1 MSLRTLVAGVDTSTQSCKVRVTDAETGEL--VRFGQAKHPNGTSVDPSYWWSAFQEAAEQAGGLDDVSALAVG 71 (515) T ss_dssp -CCSCEEEEEEECSSEEEEEEEETTTCCE--EEEEEEECCSSSEECTHHHHHHHHHHHHHTTCSTTEEEEEEE T ss_pred CCCCCEEEEEEECHHCEEEEEEECCCCEE--EEEEECCCCCCEEECHHHHHHHHHHHHHHCCCHHCCEEEEEE T ss_conf 99785899998600021637898999979--999962498988899999999999999962773134699998 No 27 >3p4i_A Acetate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, no pathogenic species; 2.35A {Mycobacterium avium} Probab=84.85 E-value=2 Score=22.22 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=38.0 Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEEC-----CCCCCHHHHHHHHHHHHHHH Q ss_conf 8806999978887205899997199689998336873-----88999888999999989998 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-----CVRQSLAFRLCQLYEGLTDV 59 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t-----~~~~~~~~Rl~~I~~~l~~i 59 (169) .+||||-|.||++++=|+++|.+... ....|.++. ..-.++.+++..+.+.|.+- T Consensus 11 ~~~kILviN~GSSS~K~alf~~~~~~--~~~~g~~e~i~~~~~~~~~~~~~~~~il~~L~~~ 70 (392) T 3p4i_A 11 GARRVLVINSGSSSLKFQLVDPESGV--AASTGIVERIGEESSPVPDHDAALRRAFDMLAGD 70 (392) T ss_dssp -CCEEEEEEECSSCEEEEEECTTTCC--EEEEEEECCC--CCCSCCSHHHHHHHHHHHHHHT T ss_pred CCCEEEEECCCCHHHEEEEEECCCCC--EECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHC T ss_conf 78879999476140563689389985--6502565322898887889999999999999865 No 28 >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, ribonuclease H fold, sugar kinase/HSP70/actin superfamily, domain rotation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* Probab=84.23 E-value=1.1 Score=23.93 Aligned_cols=56 Identities=13% Similarity=0.041 Sum_probs=37.4 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCC--CCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 699997888720589999719968999833687388--99988899999998999862279 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV--RQSLAFRLCQLYEGLTDVIKNWR 64 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~--~~~~~~Rl~~I~~~l~~ii~~~~ 64 (169) ..||||-|-|+|=++++|.+++ ++......+.. .....+-+..|.+.+.+++++.. T Consensus 7 ~~iGIDiGGTk~~~~l~d~~G~---il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~g 64 (347) T 2ch5_A 7 IYGGVEGGGTRSEVLLVSEDGK---ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAG 64 (347) T ss_dssp EEEEEEECTTCEEEEEEETTSC---EEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHHHT T ss_pred EEEEEECCCHHEEEEEECCCCC---EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 8999990612128889949999---999999468996658999999999999999999749 No 29 >1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A* Probab=82.15 E-value=0.65 Score=25.23 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.3 Q ss_pred CCEEEEECCCCCEEEEEEEEE Q ss_conf 806999978887205899997 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDV 24 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~ 24 (169) .||||-|.||++++=|+++|. T Consensus 1 m~kILvIN~GSSS~K~alf~~ 21 (381) T 1saz_A 1 MFRILTINPGSTSTKLSIFED 21 (381) T ss_dssp CCEEEEEEECSSEEEEEEEET T ss_pred CCEEEEECCCCHHHEEEEEEC T ss_conf 974999857817562378938 No 30 >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, structural genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* Probab=81.97 E-value=2.8 Score=21.29 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=36.9 Q ss_pred CCCE--EEEECCCCCEEEEEEEEEECCEEEEEEEEEEEC-----CCC---CCHHHHHHHHHHHHHHHHHCCC Q ss_conf 8806--999978887205899997199689998336873-----889---9988899999998999862279 Q gi|254780554|r 3 KSIR--IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS-----CVR---QSLAFRLCQLYEGLTDVIKNWR 64 (169) Q Consensus 3 ~~Mr--ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t-----~~~---~~~~~Rl~~I~~~l~~ii~~~~ 64 (169) -+|. +||||-|++++=.+++|.+++. +....... ... .+..+=...+.+.++++++++. T Consensus 2 ~~M~kyvlgIDiGTss~Ka~l~d~~g~i---~~~~~~~~~~~~~~~g~~Eqd~~~~~~~~~~~i~~~~~~~~ 70 (501) T 3g25_A 2 NAMEKYILSIDQGTTSSRAILFNQKGEI---AGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVINEND 70 (501) T ss_dssp -CCCCEEEEEEECSSEEEEEEECTTSCE---EEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTT T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCE---EEEEEECCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCC T ss_conf 8727279999831103100078599989---99999727713589980888999999999999999998759 No 31 >1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.30A {Porphyromonas gingivalis W83} SCOP: c.55.1.5 c.55.1.5 Probab=81.92 E-value=2.8 Score=21.29 Aligned_cols=60 Identities=20% Similarity=0.122 Sum_probs=35.7 Q ss_pred EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHCCCCCEEE Q ss_conf 99997888720589999719968999833687388-9998889999999899986227962778 Q gi|254780554|r 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV-RQSLAFRLCQLYEGLTDVIKNWRPEEAA 69 (169) Q Consensus 7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~-~~~~~~Rl~~I~~~l~~ii~~~~Pd~va 69 (169) ||++|=|-++|=|++++ +++.+.....| -.++ ..+..+-...|.+.+.+.+.....+..+ T Consensus 2 iL~vDgGGTKT~~~l~~-~g~~i~~~~~~--~~N~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 62 (291) T 1zbs_A 2 ILIGDSGSTKTDWCIAK-EGKSLGRFQTS--GINPFQQDRNEIDTALRSEVLPAIGQKASSIRA 62 (291) T ss_dssp EEEEEECSSEEEEEEEE-TTEEEEEEEEE--CCCTTTSCHHHHHHHHTTTTHHHHTTSTTTCCE T ss_pred EEEEEECHHHEEEEEEC-CCCEEEEEECC--CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE T ss_conf 89999363257899998-99789999748--888201799999999999999998636888416 No 32 >3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12} Probab=81.38 E-value=1.1 Score=23.76 Aligned_cols=60 Identities=8% Similarity=0.127 Sum_probs=40.1 Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 8069999788872058999971996899983368738899988899999998999862279627 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEE 67 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~ 67 (169) .-.|+|||-|-+++=++++|..++- +....+.++. ...+.-+..|.+.+.++++++..+. T Consensus 6 ~~~v~GIDiGgt~i~~~l~d~~g~i---~~~~~~~~~~-~~~~~~~~~i~~~i~~~~~~~~~~i 65 (310) T 3htv_A 6 HNVVAGVDMGATHIRFCLRTAEGET---LHCEKKRTAE-VIAPGLVSGIGEMIDEQLRRFNARC 65 (310) T ss_dssp EEEEEEEEECSSEEEEEEEETTSCE---EEEEEEEHHH-HHTTCHHHHHHHHHHHHHHHHTEEE T ss_pred CCEEEEEEECCCEEEEEEECCCCCE---EEEEEECCCC-CCHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 9899999976667999999299989---9999961888-7889999999999999998759973 No 33 >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Probab=80.63 E-value=2.9 Score=21.26 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=7.9 Q ss_pred EEEECCCCCEEEEEEEEE Q ss_conf 999978887205899997 Q gi|254780554|r 7 IIGIDPGLRRTGWGIVDV 24 (169) Q Consensus 7 ILGIDPGl~~tG~avie~ 24 (169) ++=+|-|-..|-.+|++. T Consensus 411 vaViDiGGGTTDvSI~~~ 428 (607) T 1nbw_A 411 LAILDLGAGSTDAAIVNA 428 (607) T ss_dssp EEEEEECSSEEEEEEECS T ss_pred EEEEEECCCCEEEEEEEC T ss_conf 499995898379999969 No 34 >3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} Probab=80.24 E-value=3.2 Score=20.92 Aligned_cols=81 Identities=19% Similarity=0.093 Sum_probs=54.9 Q ss_pred CCCEEEEECCCCCEEEEEEEEEECC-EEEEEEEEEEECCCCCCH----------HHHHHHHHHHHHHHHHCCCCCE-EEE Q ss_conf 8806999978887205899997199-689998336873889998----------8899999998999862279627-788 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGD-NLCFVSSGTIVSCVRQSL----------AFRLCQLYEGLTDVIKNWRPEE-AAV 70 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~-~~~li~~g~I~t~~~~~~----------~~Rl~~I~~~l~~ii~~~~Pd~-vai 70 (169) ++|+|=.||-|++.+=+-|.|..++ .++.++.....+.-.... -+|+..+-+.+.+++++|.++. .++ T Consensus 14 ~~~~iAvIDIGSNSirl~I~e~~~~~~~~~l~~~~~~~rLg~~~~~~g~is~~~i~~~~~~L~~f~~~~~~~~v~~~~~v 93 (343) T 3cer_A 14 ESVTVAGIDCGTNSIRLKIARVDADGMHEVVPRILRVIRLGQDVDKTHRFADEALERAYVAAREFAGVIAEHPIDGLRFV 93 (343) T ss_dssp CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEEECCCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHTTSCCSEEEEE T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 78879999805540799999987999813400027997766771114990999999999999999999863786559986 Q ss_pred EHHHH--CCCHHHHH Q ss_conf 50332--02412478 Q gi|254780554|r 71 EQVFV--NKDAVATL 83 (169) Q Consensus 71 E~~F~--~~n~~t~~ 83 (169) =.--+ .+|.+..+ T Consensus 94 ATsA~R~A~N~~~~l 108 (343) T 3cer_A 94 ATSATRDAENREEFE 108 (343) T ss_dssp ECHHHHHCTTHHHHH T ss_pred HHHHHHHCCCCCCHH T ss_conf 349998651540099 No 35 >2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima} Probab=78.98 E-value=3.6 Score=20.67 Aligned_cols=52 Identities=15% Similarity=0.307 Sum_probs=33.2 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEEC--------------------CCCCCHHHHHHHHHHHHHH Q ss_conf 06999978887205899997199689998336873--------------------8899988899999998999 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS--------------------CVRQSLAFRLCQLYEGLTD 58 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t--------------------~~~~~~~~Rl~~I~~~l~~ 58 (169) ||||-|-||++++=|+++|.++.+. +..|.++. ..-.++.+++..+.+.|.+ T Consensus 1 MkILviN~GSSS~K~alf~~~~~~~--l~~g~~e~ig~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~il~~L~~ 72 (403) T 2iir_A 1 MRVLVINSGSSSIKYQLIEMEGEKV--LCKGIAERIGIEGSRLVHRVGDEKHVIERELPDHEEALKLILNTLVD 72 (403) T ss_dssp CEEEEEEEETTEEEEEEEETTTTEE--EEEEEEECTTSTTCEEEEEETTEEEEEECCCCSHHHHHHHHHHHHHC T ss_pred CEEEEECCCHHHHEEEEEECCCCCE--EEEEEEEEECCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHH T ss_conf 9199985783746428897799847--88888988459986489993882136621579999999999999985 No 36 >1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Probab=78.33 E-value=3.7 Score=20.55 Aligned_cols=59 Identities=8% Similarity=0.142 Sum_probs=45.2 Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 806999978887205899997199689998336873889998889999999899986227962 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd 66 (169) ...+||||-|-+.+-++++|..++ .+....+.++ ..+.++-+..|.+.+.+++.++.++ T Consensus 107 ~~~~iGIdig~~~i~~~l~dl~G~---il~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~~~~~ 165 (429) T 1z05_A 107 GWQFLSMRLGRGYLTIALHELGGE---VLIDTKIDIH-EIDQDDVLARLLFEIEEFFQTYAAQ 165 (429) T ss_dssp TEEEEEEEEETTEEEEEEEETTSC---EEEEEEEECC-CCBHHHHHHHHHHHHHHHHHHTTTT T ss_pred EEEEEEEEECCCEEEEEEECCCCC---EEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHCCCC T ss_conf 049999998999899999849987---8999983488-7887899999999999999975766 No 37 >3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3lm9_A* Probab=77.79 E-value=3.9 Score=20.45 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=39.2 Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEH Q ss_conf 806999978887205899997199689998336873889998889999999899986227962778850 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQ 72 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~ 72 (169) +.-++|||-|-+++=++++|..++- ++...+.|.. ++ ...+.+.+.+++++...+.|-- T Consensus 2 ~~l~~GiDiGgT~i~~~l~d~~G~i---l~~~~~pt~~----~~---~~~~~i~~~~~~~~i~~igi~~ 60 (302) T 3epq_A 2 NAMLGGIEAGGTXFVCAVGREDGTI---IDRIEFPTXM----PD---ETIEXVIQYFSQFSLQAIGIGS 60 (302) T ss_dssp -CCEEEEEECSSEEEEEEECTTSCE---EEEEEEECCC----HH---HHHHHHHHHHTTSCCSEEEEEE T ss_pred CCEEEEEEECCCEEEEEEECCCCCE---EEEEEECCCC----HH---HHHHHHHHHHHHHCCCEEEEEE T ss_conf 9779999967747999999699939---9999966899----79---9999999999872576547911 No 38 >3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis} Probab=76.71 E-value=4.1 Score=20.27 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=39.6 Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 8069999788872058999971996899983368738899988899999998999862279 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~ 64 (169) +-.|||||-|-+++=++++|..+. +++.-.+.+. .+....-+..|.+.+.++...+. T Consensus 8 ~~~vlgiDIGGT~i~~al~d~~g~---i~~~~~~pt~-~~~~~~~l~~i~~~i~~~~~~~~ 64 (366) T 3mcp_A 8 NRIVMTLDAGGTNFVFSAIQGGKE---IADPVVLPAC-ADCLDKCLGNLVEGFKAIQAGLP 64 (366) T ss_dssp CCEEEEEECSSSEEEEEEEETTEE---CSCCEEEECC-TTCHHHHHHHHHHHHHHHHTTCS T ss_pred CCEEEEEEECCCEEEEEEEECCCC---EEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHCC T ss_conf 988999998731499999908995---9999997589-88999999999999999985478 No 39 >1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A* Probab=75.76 E-value=3.2 Score=20.99 Aligned_cols=24 Identities=13% Similarity=0.499 Sum_probs=21.2 Q ss_pred CEEEEECCCCCEEEEEEEEEECCE Q ss_conf 069999788872058999971996 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDN 28 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~ 28 (169) |+||-|.||++++=|+++|..+.+ T Consensus 1 MkILvIN~GSSS~K~alf~~~~~~ 24 (408) T 1g99_A 1 MKVLVINAGSSSLKYQLIDMTNES 24 (408) T ss_dssp CEEEEEEECSSCEEEEEEETTTTE T ss_pred CEEEEECCCHHHHEEEEEECCCCC T ss_conf 909998477572641789789986 No 40 >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinase-HSP70- actin superfamily, L-rhamnulose kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* Probab=75.10 E-value=2.8 Score=21.27 Aligned_cols=23 Identities=9% Similarity=0.097 Sum_probs=20.1 Q ss_pred EEEEECCCCCEEEEEEEEEECCE Q ss_conf 69999788872058999971996 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDN 28 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~ 28 (169) -+||||-|++++=-+++|.+++. T Consensus 5 ~~lgiDiGTtsvKa~l~d~~g~~ 27 (489) T 2uyt_A 5 NCVAVDLGASSGRVMLARYEREC 27 (489) T ss_dssp EEEEEEECSSEEEEEEEEEEGGG T ss_pred EEEEEECCCCCEEEEEEECCCCE T ss_conf 69999776435265899679988 No 41 >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A Probab=71.66 E-value=5.5 Score=19.49 Aligned_cols=59 Identities=5% Similarity=0.027 Sum_probs=42.0 Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 806999978887205899997199689998336873889998889999999899986227962 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd 66 (169) .-.++|||-|-+.+-++++|..++- +....+.++...+ .+-+..+.+.+.+++.++..+ T Consensus 84 ~~~~igv~i~~~~i~~~l~dl~g~i---i~~~~~~~~~~~~-~~~l~~i~~~i~~~~~~~~~~ 142 (406) T 1z6r_A 84 AWHYLSLRISRGEIFLALRDLSSKL---VVEESQELALKDD-LPLLDRIISHIDQFFIRHQKK 142 (406) T ss_dssp TCEEEEEEEETTEEEEEEEETTCCE---EEEEEEECCSSCS-SCHHHHHHHHHHHHHHHTGGG T ss_pred CCEEEEEEECCCEEEEEEECCCCCE---EEEEEEECCCCCH-HHHHHHHHHHHHHHHHHCCCC T ss_conf 6689999988988999998699988---9889984367986-999999999999999965775 No 42 >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Probab=68.34 E-value=6.5 Score=19.05 Aligned_cols=28 Identities=11% Similarity=0.048 Sum_probs=13.5 Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCC Q ss_conf 0677765316888899999999999628 Q gi|254780554|r 108 PNTIKKAVIGVGHGDKKQIHMMLKMLMP 135 (169) Q Consensus 108 P~~vKkavtG~G~A~KeqV~~mV~~ll~ 135 (169) +..+-..+.=-|.+.=..+..++...|. T Consensus 546 ~~dIdgVVLVGGSSrlpgI~eLVte~L~ 573 (610) T 2d0o_A 546 IRDIPFVVLVGGSSLDFEVPQLVTDALA 573 (610) T ss_dssp GGGCCEEEEESGGGGCSSHHHHHHHHTT T ss_pred CCCCCEEEEECHHHHHHCHHHHHHHHHC T ss_conf 0348909998825411069999999847 No 43 >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Probab=66.60 E-value=7.1 Score=18.84 Aligned_cols=55 Identities=9% Similarity=0.073 Sum_probs=39.7 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 0699997888720589999719968999833687388999888999999989998622 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~ 62 (169) --++|||-|-+++-++++|..++ .+....+.++...+..+-+..|.+.++++++. T Consensus 87 ~~~igidig~~~i~~~l~d~~g~---vi~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 141 (380) T 2hoe_A 87 AYVLGIEVTRDEIAACLIDASMN---ILAHEAHPLPSQSDREETLNVMYRIIDRAKDM 141 (380) T ss_dssp CEEEEEEECSSEEEEEEEETTCC---EEEEEEEECCSSCCHHHHHHHHHHHHHHHHHH T ss_pred CEEEEEEECCCEEEEEEECCCCC---EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 78999999999899999949998---99999875798888899999999999999998 No 44 >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain DSM 12444, SGX, transferase, structural genomics; 2.50A {Novosphingobium aromaticivorans DSM12444} Probab=66.31 E-value=3.3 Score=20.91 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=18.9 Q ss_pred EEEEECCCCCEEEEEEEEEECCEE Q ss_conf 699997888720589999719968 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNL 29 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~ 29 (169) -+|+||-|++++=.+++|.+++.. T Consensus 7 ~~l~iD~GTts~Ka~l~d~~g~~i 30 (482) T 3h6e_A 7 ATIVIDLGKTLSKVSLWDLDGRML 30 (482) T ss_dssp -CEEEEECSSEEEEEEECTTSCEE T ss_pred EEEEEECCHHHHHHEEEECCCCEE T ss_conf 699998612210040681889899 No 45 >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Probab=65.25 E-value=2.3 Score=21.80 Aligned_cols=18 Identities=44% Similarity=0.682 Sum_probs=14.2 Q ss_pred EEEEECCCCCEEEEEEEE Q ss_conf 699997888720589999 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVD 23 (169) Q Consensus 6 rILGIDPGl~~tG~avie 23 (169) .|+|||-|+++++.|+.+ T Consensus 3 ~viGIDfGTt~s~va~~~ 20 (383) T 1dkg_D 3 KIIGIDLGTTNSCVAIMD 20 (383) T ss_dssp CCCEEECCSSEEEEEEEE T ss_pred CEEEEECCCCCEEEEEEE T ss_conf 999998560288999999 No 46 >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} Probab=63.11 E-value=8.2 Score=18.43 Aligned_cols=78 Identities=13% Similarity=0.052 Sum_probs=52.7 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCC--------CH--HHHHHHHHHHHHHHHHCCCCCEEE-EEHHH Q ss_conf 69999788872058999971996899983368738899--------98--889999999899986227962778-85033 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQ--------SL--AFRLCQLYEGLTDVIKNWRPEEAA-VEQVF 74 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~--------~~--~~Rl~~I~~~l~~ii~~~~Pd~va-iE~~F 74 (169) ||=-||-|++.+=.-|.|..++++..+......+.-.. +. -+|+..+-+.+.+++++|+|+.+. +=.-- T Consensus 5 riAvIDiGSNsirl~I~~~~~~~~~~l~~~~~~~rLg~~~~~~g~is~~~i~~~~~~L~~f~~~~~~~~v~~~~~vaTsA 84 (315) T 3mdq_A 5 RIGVIDMGTNTFHLLITDIVNDRPHTLVNEKSAVGLGKGGITKGFITEEAMDRALDTLKKFRVILDEHAVVHVIATGTSA 84 (315) T ss_dssp EEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCSSTTTGGGTCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECHH T ss_pred EEEEEEECCCEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHH T ss_conf 49999955540899999965998358888889976667751149949999999999999999987643774698756599 Q ss_pred H--CCCHHHHH Q ss_conf 2--02412478 Q gi|254780554|r 75 V--NKDAVATL 83 (169) Q Consensus 75 ~--~~n~~t~~ 83 (169) + .+|.+..+ T Consensus 85 ~R~A~N~~~~~ 95 (315) T 3mdq_A 85 VRSGSNKQVLI 95 (315) T ss_dssp HHHCTTHHHHH T ss_pred HHHCCCHHHHH T ss_conf 99664738899 No 47 >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Probab=61.56 E-value=8.8 Score=18.26 Aligned_cols=59 Identities=7% Similarity=0.002 Sum_probs=33.3 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEE--EEEEEEECCCC---CCHHHHHHHHHHHHHHHHHCCC Q ss_conf 69999788872058999971996899--98336873889---9988899999998999862279 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCF--VSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNWR 64 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~l--i~~g~I~t~~~---~~~~~Rl~~I~~~l~~ii~~~~ 64 (169) -+||||-|++++=.+++|.+++.... ..+-.+..... .+..+=...+.+.+.++++++. T Consensus 3 y~lgIDiGTts~Ka~l~d~~g~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~l~~~~ 66 (495) T 2dpn_A 3 FLLALDQGTTSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRRAG 66 (495) T ss_dssp CEEEEEECSSEEEEEEECTTSCEEEEEEEECCEECSSTTCCEECHHHHHHHHHHHHHHHHHHTT T ss_pred EEEEEECCCCCEEEEEEECCCCEEEEEEEECCEECCCCCCEEECHHHHHHHHHHHHHHHHHHCC T ss_conf 9999974232334448808899999999745604589993899999999999999999999749 No 48 >1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5 Probab=60.04 E-value=1.6 Score=22.88 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=19.5 Q ss_pred EEEECCCCCEEEEEEEEEECCEEEE Q ss_conf 9999788872058999971996899 Q gi|254780554|r 7 IIGIDPGLRRTGWGIVDVAGDNLCF 31 (169) Q Consensus 7 ILGIDPGl~~tG~avie~~~~~~~l 31 (169) ||+||=|.++|=|.++| +++.+.. T Consensus 2 IL~IDgGGTKT~~vl~d-~g~~i~~ 25 (291) T 1zxo_A 2 ILIADSGSTKTDWCVVL-NGAVIKR 25 (291) T ss_dssp --CEECCTTCEEEEEEC-SSSEEEE T ss_pred EEEEEECHHHEEEEEEE-CCCEEEE T ss_conf 89999452256899994-9968999 No 49 >2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} SCOP: c.37.1.10 Probab=59.71 E-value=6.6 Score=19.03 Aligned_cols=68 Identities=18% Similarity=0.057 Sum_probs=35.8 Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEE----E-EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHH Q ss_conf 806999978887205899997199689998----3-3687388999888999999989998622796277885033 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVS----S-GTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVF 74 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~----~-g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F 74 (169) ..-|+.+||++..+|-+++... .+... - ..|+..........+..-....-.+++....|.+.+|.+= T Consensus 86 ~vavlavDpss~~sggailgDr---~Rm~~l~~~~~~~ir~~~s~~~lgg~~~~~~~~v~~l~~~g~D~iliETVG 158 (341) T 2p67_A 86 KVAVIAVDPSSPVTGGSILGDK---TRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVG 158 (341) T ss_dssp CEEEEEECCC------------------CTTTTCTTEEEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEEC T ss_pred CEEEECCCCCCCCCCCCCCHHH---HHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 6014416886640244362126---789875157753541366654443203656889999875599731221026 No 50 >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Probab=58.17 E-value=7.4 Score=18.69 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=15.7 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEE Q ss_conf 6999978887205899997199689998 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVS 33 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~ 33 (169) .||=+|-|-..+-.+|++..++.++.+. T Consensus 162 ~vlV~D~GgGT~DvSiv~~~~~~~~vl~ 189 (509) T 2v7y_A 162 TILVYDLGGGTFDVSILELGDGVFEVKA 189 (509) T ss_dssp EEEEEEECSSCEEEEEEEEETTEEEEEE T ss_pred EEEEEECCCCCEEEEEEEEECCEEEEEE T ss_conf 8999997998489999998199899999 No 51 >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* Probab=54.85 E-value=11 Score=17.56 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=19.3 Q ss_pred CC-EEEEECCCCCEEEEEEEEEECC Q ss_conf 80-6999978887205899997199 Q gi|254780554|r 4 SI-RIIGIDPGLRRTGWGIVDVAGD 27 (169) Q Consensus 4 ~M-rILGIDPGl~~tG~avie~~~~ 27 (169) .| -|||||-|++++=.+++|.+++ T Consensus 2 ~M~~vlgID~GTss~Ka~l~d~~g~ 26 (503) T 2w40_A 2 SMNVILSIDQSTQSTKVFFYDEELN 26 (503) T ss_dssp -CEEEEEEEECSSEEEEEEEETTCC T ss_pred CCCEEEEEECCCCCEEEEEECCCCC T ss_conf 6669999985100210007869998 No 52 >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, glycerol metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis KOD1} Probab=54.66 E-value=11 Score=17.54 Aligned_cols=55 Identities=15% Similarity=0.076 Sum_probs=29.9 Q ss_pred EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-----CC---CCHHHHHHHHHHHHHHHHHCCC Q ss_conf 9999788872058999971996899983368738-----89---9988899999998999862279 Q gi|254780554|r 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-----VR---QSLAFRLCQLYEGLTDVIKNWR 64 (169) Q Consensus 7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-----~~---~~~~~Rl~~I~~~l~~ii~~~~ 64 (169) +||||-|++++=.+++|.+++.. .......+ .. .+..+=...+.+.+++++++.. T Consensus 5 ~lgIDiGTss~Ka~l~d~~g~~~---~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~~~~~~~~~~ 67 (497) T 2zf5_O 5 VLSLDEGTTSARAIIFDRESNIH---GIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQSAR 67 (497) T ss_dssp EEEEEECSSEEEEEEECTTCCEE---EEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHT T ss_pred EEEEECCCCCEEEEEEECCCCEE---EEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCC T ss_conf 99998025352766995889999---9999977622689982899999999999999999999759 No 53 >2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 Probab=53.94 E-value=12 Score=17.47 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=38.6 Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 80699997888720589999719968999833687388999888999999989998622796 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~P 65 (169) +|= ||||-|=+++=++++|..+. ++....+.|+ ..+...=+..|.+.+.++..++.. T Consensus 24 ~~y-lGiDiGGT~i~~al~d~~G~---il~~~~~~t~-~~~~~~~l~~i~~~i~~~~~~~~~ 80 (327) T 2ap1_A 24 AMY-YGFDIGGTKIALGVFDSTRR---LQWEKRVPTP-HTSYSAFLDAVCELVEEADQRFGV 80 (327) T ss_dssp CEE-EEEEECSSEEEEEEEETTCC---EEEEEEEECC-CSCHHHHHHHHHHHHHHHHHHHTS T ss_pred CEE-EEEEECCCEEEEEEECCCCC---EEEEEEEECC-CCCHHHHHHHHHHHHHHHHHHCCC T ss_conf 579-99996722499999919998---9999998699-999999999999999999886388 No 54 >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Probab=53.60 E-value=9.2 Score=18.13 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=17.5 Q ss_pred HHHHHHHHHHCCCCCC--CCCCHHHHHHHHHHHHH Q ss_conf 9999999996288999--99556789999999764 Q gi|254780554|r 124 KQIHMMLKMLMPESFF--KGKDAADALAIAVCHAY 156 (169) Q Consensus 124 eqV~~mV~~ll~~~~~--~~~D~aDAlAiAl~h~~ 156 (169) --|+.+++.+|+.+.. .+.|++=|.+.|+..+. T Consensus 347 P~Vq~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ 381 (605) T 2kho_A 347 PMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGV 381 (605) T ss_dssp HHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHTT T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 89999999985989677979624899879999763 No 55 >3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Agrobacterium tumefaciens str} Probab=53.27 E-value=12 Score=17.40 Aligned_cols=81 Identities=6% Similarity=0.037 Sum_probs=53.1 Q ss_pred CCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCH----------HHHHHHHHHHHHHHHHCCCCCE-EEEEH Q ss_conf 806999978887205899997199689998336873889998----------8899999998999862279627-78850 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSL----------AFRLCQLYEGLTDVIKNWRPEE-AAVEQ 72 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~----------~~Rl~~I~~~l~~ii~~~~Pd~-vaiE~ 72 (169) ..+|=-||-|++++=+.|.|..++.++.++.....+.-.... -+|+...-.++.+++++|.++. .++=. T Consensus 14 ~~~iAvIDiGSNsirl~I~e~~~~~~~~i~~~k~~~rLg~~~~~~g~ls~~~i~~~~~~L~~f~~~~~~~~v~~i~~vaT 93 (508) T 3hi0_A 14 LAPVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRMHEEGVTRALMALRRFHVLSEQAQAQKLYVLAT 93 (508) T ss_dssp CCCEEEEEECSSEEEEEEESCSSSSCCEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEC T ss_pred CCCEEEEEECCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 99589999655408999997379985078888899636567642599199999999999999999998679978999916 Q ss_pred HHH--CCCHHHHHH Q ss_conf 332--024124788 Q gi|254780554|r 73 VFV--NKDAVATLK 84 (169) Q Consensus 73 ~F~--~~n~~t~~~ 84 (169) --+ .+|....+. T Consensus 94 sA~R~A~N~~~~~~ 107 (508) T 3hi0_A 94 AAAREAENGPDFIR 107 (508) T ss_dssp THHHHSTTHHHHHH T ss_pred HHHHCCCCHHHHHH T ss_conf 99885938999999 No 56 >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, disease mutation, mitochondrion, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Probab=53.26 E-value=4.2 Score=20.22 Aligned_cols=76 Identities=9% Similarity=0.040 Sum_probs=41.4 Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEE-EEE-EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCC Q ss_conf 880699997888720589999719968999-833-6873889998889999999899986227962778850332024 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFV-SSG-TIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKD 78 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li-~~g-~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n 78 (169) ...=||.+||++..+|=+++...-+-..+- +-+ .++..+......-+..--...-.+++.+..|.+.||.+=.+.. T Consensus 103 ~~vaVla~Dpss~~~gg~llgdriRm~~~~~~~~~~ir~~~~~~~~gg~~~~~~~~i~llea~G~D~i~iEtvG~gq~ 180 (349) T 2www_A 103 HKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVGQS 180 (349) T ss_dssp CCEEEEECCC----------------CCSTTCTTEEEECC---------CTTHHHHHHHHHHTTCSEEEEECCCC--C T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC T ss_conf 717899578786626888775388469635787631266644442111025479999987406998699985366502 No 57 >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Probab=53.10 E-value=12 Score=17.38 Aligned_cols=61 Identities=15% Similarity=0.039 Sum_probs=37.9 Q ss_pred CEEEEECCCC----CEEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEH Q ss_conf 0699997888----7205899997199689998336873889998889999999899986227962778850 Q gi|254780554|r 5 IRIIGIDPGL----RRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQ 72 (169) Q Consensus 5 MrILGIDPGl----~~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~ 72 (169) --++|+||+. ..+.+.|++..+...+.+..-....-+-..+. +.+.++...|++..+.||. T Consensus 420 ~YvigvDvA~G~~~DySai~Vidv~~~~~eqVa~~~~n~i~~~~~a-------~~I~~l~~~YN~a~V~VE~ 484 (592) T 3cpe_A 420 KYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISHLILP-------DIVMRYLVEYNECPVYIEL 484 (592) T ss_dssp CEEEEEECCSSBTTBCEEEEEEECSSSSEEEEEEEEESSSCTTTHH-------HHHHHHHHHTTSCCEEEEE T ss_pred CEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCHHHHH-------HHHHHHHHHCCCCEEEEEE T ss_conf 0268851244577773279994147876189999835888989999-------9999999972884899997 No 58 >3hz6_A Xylulokinase; xylulose, structural genomic, manolate, transferase, structural genomics, PSI-2, protein structure initiative; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Probab=53.06 E-value=12 Score=17.38 Aligned_cols=27 Identities=22% Similarity=0.259 Sum_probs=18.6 Q ss_pred CCCCCEEEEECCCCCEEEEEEEEEECC Q ss_conf 998806999978887205899997199 Q gi|254780554|r 1 MRKSIRIIGIDPGLRRTGWGIVDVAGD 27 (169) Q Consensus 1 ~~~~MrILGIDPGl~~tG~avie~~~~ 27 (169) |..+.=|||||-|++++=.+++|.+++ T Consensus 1 m~~~~YilgID~GTts~Ka~l~d~~g~ 27 (511) T 3hz6_A 1 MSLAFYIATFDIGTTEVKAALADRDGG 27 (511) T ss_dssp -CCCCEEEEEEECSSEEEEEEECTTSC T ss_pred CCCCEEEEEEEECCCCEEEEEEECCCC T ss_conf 974537999985120213037818899 No 59 >2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal binding protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1 Probab=52.33 E-value=13 Score=17.31 Aligned_cols=56 Identities=13% Similarity=0.321 Sum_probs=38.3 Q ss_pred CCCEEEEECCCCCEEEEEEEEEEC---------------CEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 880699997888720589999719---------------9689998336873889998889999999899986227 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAG---------------DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~---------------~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~ 63 (169) -++||+.|+.+ .|.+|..| +.+-+++.|..-..-.....++...+++++.+..+.| T Consensus 5 iP~~Vvei~~~-----~A~vd~~G~~r~v~l~lv~~~~vGDyVLVH~G~Ai~~ideeeA~e~l~~~~el~~~~~~~ 75 (75) T 2z1c_A 5 VPGKVIEVNGP-----VAVVDFGGVKREVRLDLMPDTKPGDWVIVHTGFAIEKLDEKKAMEILEAWAEVEKAMEGF 75 (75) T ss_dssp CCEEEEEEETT-----EEEEEETTEEEEEECTTSTTCCTTCEEEEETTEEEEEECHHHHHHHHHHHHHHHHHC--- T ss_pred CCEEEEEECCC-----EEEEEECCEEEEEEEEEECCCCCCCEEEEEECCHHEECCHHHHHHHHHHHHHHHHHHHCC T ss_conf 34699998799-----899990997999999860899999899994070112279999999999999999987359 No 60 >3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} Probab=51.72 E-value=13 Score=17.25 Aligned_cols=57 Identities=16% Similarity=0.074 Sum_probs=34.8 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCC-------------------CCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 699997888720589999719968999833687388-------------------99988899999998999862279 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV-------------------RQSLAFRLCQLYEGLTDVIKNWR 64 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~-------------------~~~~~~Rl~~I~~~l~~ii~~~~ 64 (169) =|||||-|++++=.+++|.++++. +......... ..+..+=...+.+.++++++++. T Consensus 6 y~LgIDiGTts~Ka~l~D~~~g~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~Eqd~~~~~~a~~~~i~~~l~~~~ 81 (572) T 3jvp_A 6 YTIGVDYGTESGRAVLIDLSNGQE--LADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDYVEVLTTSVPAVMKESG 81 (572) T ss_dssp EEEEEEECSSEEEEEEEETTTCCE--EEEEEEECTTCCBSSBSTTSCCBCCTTCCEECHHHHHHHHTTHHHHHHHC-- T ss_pred EEEEEEECCCCEEEEEEECCCCEE--EEEEEEEECCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCC T ss_conf 799997246552889998899909--9999986023432224798886789882777899999999999999999849 No 61 >2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A* Probab=51.66 E-value=13 Score=17.24 Aligned_cols=54 Identities=15% Similarity=0.112 Sum_probs=34.7 Q ss_pred CCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEE----------C-------CCCCCHHHHHHHHHHHHHH Q ss_conf 880699997888720589999719968999833687----------3-------8899988899999998999 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIV----------S-------CVRQSLAFRLCQLYEGLTD 58 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~----------t-------~~~~~~~~Rl~~I~~~l~~ 58 (169) ..|.||-|-||++++=|+++|.++.+ .+..|.+. . ....++.+.+..+...|.+ T Consensus 16 ~~~lILVIN~GSSS~K~alf~~~~~~--~l~~g~ve~i~~~~~~~~~~~~~~~~~~~~~~~~al~~il~~L~~ 86 (415) T 2e1z_A 16 EFPVVLVINCGSSSIKFSVLDVATCD--VLMAGIADGMNTENAFLSINGDKPINLAHSNYEDALKAIAFELEK 86 (415) T ss_dssp -CCEEEEEEECSSEEEEEEEETTTCC--EEEEEEEESTTSSSCEEEETTSCCEECCSCCHHHHHHHHHHHHHT T ss_pred CCCEEEEECCCHHHHEEEEEECCCCC--EEEEECCCCCCCCCCEEEEECCEEEECCCCCHHHHHHHHHHHHHH T ss_conf 97169998277061651789789988--677602122589885699717803650302899999999999984 No 62 >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural protein; 1.90A {Thermoplasma acidophilum dsm 1728} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Probab=51.09 E-value=6.7 Score=18.98 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=13.2 Q ss_pred CCCEEEEECCCCCEEEE Q ss_conf 88069999788872058 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGW 19 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~ 19 (169) .+|.|+|||.|++.+.. T Consensus 19 ~~~~iiGID~G~~~vKv 35 (346) T 2fsj_A 19 SHMVVVGLDVGYGDTKV 35 (346) T ss_dssp --CEEEEEEECSSEEEE T ss_pred CCCEEEEEECCCCCEEE T ss_conf 98889999958572899 No 63 >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Probab=50.76 E-value=13 Score=17.15 Aligned_cols=55 Identities=18% Similarity=0.118 Sum_probs=24.2 Q ss_pred EEECCCCCEEEEEEEEEECCEEEEEEEEEEECCC---C-----CCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9997888720589999719968999833687388---9-----99888999999989998622796 Q gi|254780554|r 8 IGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV---R-----QSLAFRLCQLYEGLTDVIKNWRP 65 (169) Q Consensus 8 LGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~---~-----~~~~~Rl~~I~~~l~~ii~~~~P 65 (169) ||||-|++++=.+++|.+++ ++.....+.+. + .+..+=+..+.+.++++.+++.+ T Consensus 3 lgiDiGTtsiKa~l~d~~g~---~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~~~~l~~~~~~ 65 (484) T 2itm_A 3 IGIDLGTSGVKVILLNEQGE---VVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSL 65 (484) T ss_dssp EEEEECSSEEEEEEECTTSC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHSCC T ss_pred EEEEECCCCEEEEEECCCCC---EEEEEEEECCEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCC T ss_conf 99983343424548819898---9999998435155899838989999999999999999976796 No 64 >3c6a_A Terminase large subunit; terminase nuclease, viral protein; 1.16A {Enterobacteria phage RB49} PDB: 3c6h_A Probab=50.28 E-value=13 Score=17.11 Aligned_cols=59 Identities=12% Similarity=-0.019 Sum_probs=34.4 Q ss_pred CEEEEECCCC----CEEEEEEEEEECCEEEEEEEEEEECCCC--CCHHHHHHHHHHHHHHHHHCCCCCEEEEEH Q ss_conf 0699997888----7205899997199689998336873889--998889999999899986227962778850 Q gi|254780554|r 5 IRIIGIDPGL----RRTGWGIVDVAGDNLCFVSSGTIVSCVR--QSLAFRLCQLYEGLTDVIKNWRPEEAAVEQ 72 (169) Q Consensus 5 MrILGIDPGl----~~tG~avie~~~~~~~li~~g~I~t~~~--~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~ 72 (169) .=++|+||+. ..+-+-|+|......+.|. ..+-+.- ..++++ +.++...|++-.+.+|. T Consensus 60 ~YvigvD~A~G~g~DyS~i~V~Dvt~~~~~qVA--~~r~n~i~p~~~a~i-------i~~i~~~Yn~a~v~vE~ 124 (232) T 3c6a_A 60 KYVATLDCSEGRGQDYHALQIIDITEFPYKQVA--VYHSNTTSHFILPDI-------VFKYLMMYNECPVYIEL 124 (232) T ss_dssp CEEEEEECCCSSSSCCEEEEEEECSSSSEEEEE--EEEESCCCTTTHHHH-------HHHHHHHTTSCCEEEBC T ss_pred EEEEEEECCCCCCCCCCEEEEEECCCCCCEEEE--EECCCCCCHHHHHHH-------HHHHHHHHCCCEEEEEE T ss_conf 499999747876888787999976798714899--974036687899999-------99999870557399997 No 65 >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A* Probab=46.93 E-value=7.3 Score=18.76 Aligned_cols=71 Identities=14% Similarity=0.086 Sum_probs=39.9 Q ss_pred CCEEEEECCCCCEEEEEEEEEECC-EEEEEEE-EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHH Q ss_conf 806999978887205899997199-6899983-3687388999888999999989998622796277885033 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAGD-NLCFVSS-GTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVF 74 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~~-~~~li~~-g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F 74 (169) ..-|+.+||++..+|-+++...-+ .....+- ..++..+.......+..--.....+++....|.+.+|.+= T Consensus 109 ~VavlavDPss~~sggailgDr~Rm~~~~~~~~~~ir~~~trg~~gg~~~~~~~~~~ll~~~G~d~iiiETVG 181 (355) T 3p32_A 109 RVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVG 181 (355) T ss_dssp CEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHHHHHHHHHHHHHHTTCCEEEEEECS T ss_pred CEEEEECCCCCCCCHHHCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 6568846888742120121001247775058863576158766320244421446777875399802343035 No 66 >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural genomics, transferase, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum atcc 11170} Probab=44.48 E-value=17 Score=16.55 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=32.1 Q ss_pred CEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-----CC---CCHHHHHHHHHHHHHHHHHCCC Q ss_conf 069999788872058999971996899983368738-----89---9988899999998999862279 Q gi|254780554|r 5 IRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-----VR---QSLAFRLCQLYEGLTDVIKNWR 64 (169) Q Consensus 5 MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-----~~---~~~~~Rl~~I~~~l~~ii~~~~ 64 (169) -=|||||-|++++=.+++|.+++ ++.......+ +. .+..+=...+.+.+.++.+++. T Consensus 7 kyvlgIDiGTts~Ka~l~d~~g~---il~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~l~~~~~ 71 (508) T 3ifr_A 7 RQVIGLDIGTTSTIAILVRLPDT---VVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTTAG 71 (508) T ss_dssp CEEEEEEECSSEEEEEEEETTTE---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHC T ss_pred CEEEEEECCCCCEEEEEEECCCC---EEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCC T ss_conf 88999987223427789958999---999999856712599981899999999999999999999638 No 67 >1e4f_T Cell division protein FTSA; bacterial cell division, actin family; 1.9A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1e4g_T* Probab=41.67 E-value=18 Score=16.28 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=29.0 Q ss_pred CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEEC Q ss_conf 998806999978887205899997199689998336873 Q gi|254780554|r 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVS 39 (169) Q Consensus 1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t 39 (169) |.++=-+.|||-|++..=..+.+..+++++.+..|...+ T Consensus 4 m~k~~~~vgiDIGSs~Ik~vv~~~~~~~~~iig~g~~ps 42 (419) T 1e4f_T 4 LSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKS 42 (419) T ss_dssp ---CEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEEC T ss_pred CCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEEEECC T ss_conf 776886999998756199999997599389999997456 No 68 >2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} SCOP: c.55.1.4 c.55.1.4 PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* Probab=40.00 E-value=19 Score=16.12 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=33.0 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-----CC---CCHHHHHHHHHHHHHHHHHCCC Q ss_conf 69999788872058999971996899983368738-----89---9988899999998999862279 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-----VR---QSLAFRLCQLYEGLTDVIKNWR 64 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-----~~---~~~~~Rl~~I~~~l~~ii~~~~ 64 (169) =+||||-|++++=.+++|.+++.. .......+ +. .+..+=...+.+.+.+++.+.. T Consensus 4 Y~lgIDiGTss~Ka~l~d~~g~~~---~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~i~~~~~~~~ 67 (510) T 2p3r_A 4 YIVALDQGTTSSRAVVMDHDANII---SVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKAD 67 (510) T ss_dssp EEEEEEECSSEEEEEEECTTCCEE---EEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTT T ss_pred EEEEEEECCCCEEEEEECCCCCEE---EEEEECCCEECCCCCCEEECHHHHHHHHHHHHHHHHHHCC T ss_conf 999998224142222882999899---9999537703589982898999999999999999999759 No 69 >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Probab=39.52 E-value=20 Score=16.08 Aligned_cols=19 Identities=16% Similarity=0.143 Sum_probs=13.1 Q ss_pred EEEECCCCCEEEEEEEEEE Q ss_conf 9999788872058999971 Q gi|254780554|r 7 IIGIDPGLRRTGWGIVDVA 25 (169) Q Consensus 7 ILGIDPGl~~tG~avie~~ 25 (169) |+|||.|++++..+..+.. T Consensus 2 iIgID~Gt~~~kva~~~~~ 20 (320) T 2zgy_A 2 LVFIDDGSTNIKLQWQESD 20 (320) T ss_dssp EEEEEECSSEEEEEEECSS T ss_pred EEEEECCCCCEEEEEECCC T ss_conf 9999869116999999199 No 70 >3khy_A Propionate kinase; csgid, IDP01739, ATP-binding, nucleotide-binding, transferase, structural genomics; 1.98A {Francisella tularensis subsp} Probab=39.36 E-value=20 Score=16.06 Aligned_cols=23 Identities=9% Similarity=0.270 Sum_probs=20.0 Q ss_pred EEEEECCCCCEEEEEEEEEECCE Q ss_conf 69999788872058999971996 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDN 28 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~ 28 (169) |||-|.||+++|=|++++.+..+ T Consensus 3 kILvIN~GSSS~K~alf~~~~~~ 25 (384) T 3khy_A 3 EILVLNCGSSSVKFALINPHTSQ 25 (384) T ss_dssp EEEEEEECSSCEEEEEEETTTTE T ss_pred EEEEEECCHHHHHHEEEECCCCC T ss_conf 49999376663714779689987 No 71 >1io2_A Ribonuclease HII; endonuclease, hydrolase; 2.00A {Thermococcus kodakarensis KOD1} SCOP: c.55.3.1 PDB: 2dfh_A 2dff_A 2dfe_A 1x1p_A Probab=38.92 E-value=7 Score=18.88 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=26.7 Q ss_pred CEEEEECCCCC-------EEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 06999978887-------205899997199689998336873889998889999999899986227 Q gi|254780554|r 5 IRIIGIDPGLR-------RTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63 (169) Q Consensus 5 MrILGIDPGl~-------~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~ 63 (169) |||+|+|=.=+ ..+-++++... ...+...| ++=+++.+...| .+|++.+.+....| T Consensus 1 m~I~GvDEaGRG~l~GPvvvaav~~~~~~-~~~l~~~g-v~DSK~Ls~~kR-~~l~~~i~~~~~~~ 63 (213) T 1io2_A 1 MKIAGIDEAGRGPVIGPMVIAAVVVDENS-LPKLEELK-VRDSKKLTPKRR-EKLFNEILGVLDDY 63 (213) T ss_dssp CEEEEEEEECSSCSBSCEEEEEEEEEGGG-HHHHHHTT-GGGCTTCCHHHH-HHHHHHHHTTCSEE T ss_pred CEEEEECCCCCCCCCCCEEEEEEEEEHHH-CCHHHHCC-CCCCHHCCHHHH-HHHHHHHHHHHHHH T ss_conf 92993547787773110068999980142-30333037-752010999899-99999999776652 No 72 >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Probab=33.57 E-value=18 Score=16.34 Aligned_cols=16 Identities=38% Similarity=0.293 Sum_probs=12.0 Q ss_pred EEEEECCCCCEEEEEE Q ss_conf 6999978887205899 Q gi|254780554|r 6 RIIGIDPGLRRTGWGI 21 (169) Q Consensus 6 rILGIDPGl~~tG~av 21 (169) |++|||-|++++-.++ T Consensus 4 ~~iGID~GTtns~va~ 19 (344) T 1jce_A 4 KDIGIDLGTANTLVFL 19 (344) T ss_dssp CEEEEEECSSEEEEEE T ss_pred CCEEEECCHHHEEEEE T ss_conf 8689988845689999 No 73 >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} Probab=32.88 E-value=25 Score=15.42 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=27.1 Q ss_pred EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCC---CC-----CHHHHHHHHHHHHHHHHHCC Q ss_conf 99997888720589999719968999833687388---99-----98889999999899986227 Q gi|254780554|r 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCV---RQ-----SLAFRLCQLYEGLTDVIKNW 63 (169) Q Consensus 7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~---~~-----~~~~Rl~~I~~~l~~ii~~~ 63 (169) +||||-|++++=.+++|.+++. +.......+. +. +..+=...+.+.+++++++. T Consensus 4 ~lgID~GTts~Ka~l~d~~g~i---~~~~~~~~~~~~~~~g~~E~d~~~~w~~~~~~i~~~l~~~ 65 (504) T 2d4w_A 4 VLAIDQGTTSSRAIVFDHSGEI---YSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTRG 65 (504) T ss_dssp EEEEEECSSEEEEEEECTTSCE---EEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHT T ss_pred EEEEEECCCCEEEEEECCCCCE---EEEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHC T ss_conf 9999832313100178598989---9999962771459998089999999999999999999975 No 74 >3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein structure initiative; 1.85A {Shewanella oneidensis mr-1} SCOP: b.40.14.1 Probab=32.49 E-value=26 Score=15.38 Aligned_cols=57 Identities=14% Similarity=0.266 Sum_probs=37.1 Q ss_pred CCCEEEEECCCCCEEEEEEEEEE----------------CCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 88069999788872058999971----------------9968999833687388999888999999989998622 Q gi|254780554|r 3 KSIRIIGIDPGLRRTGWGIVDVA----------------GDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKN 62 (169) Q Consensus 3 ~~MrILGIDPGl~~tG~avie~~----------------~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~ 62 (169) -++||+.||.... .|.+|.. -+.+-+++.|.....-.....++...+++.+.+..+. T Consensus 26 IP~kVveI~~~~~---~A~Vd~~Gv~reV~l~Lv~e~v~vGDyVLVHaGfAIekIdeeeA~etl~~l~el~~~~e~ 98 (103) T 3d3r_A 26 IPSQVVAVDNERQ---SVTVDTLGVRRDVSSHLMTEPLAIGDYVLIHIGFVMNKIDRNDALQSLELYQEIVSKLEN 98 (103) T ss_dssp CCEEEEEEETTTT---EEEEEETTEEEEEECTTBSSCCCTTCEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHC- T ss_pred ECEEEEEECCCCC---EEEEECCCEEEEEEEECCCCCCCCCCEEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHH T ss_conf 1519999929888---899967994999981015678889989999516676438999999999999999997530 No 75 >3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes} Probab=32.01 E-value=26 Score=15.33 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=40.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHH Q ss_conf 899988899999998999862279627788503320241247889999999999998601617752606 Q gi|254780554|r 41 VRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPN 109 (169) Q Consensus 41 ~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~ 109 (169) ..+++.+.+..+-..+.+++.+.+||.|.+=.- ..++ ++ ..+++...+||+..+-.. T Consensus 91 ~~~~~~~~~~~~i~~~~~~~~~~kPD~vlV~GD-----r~~~--la-----~alaa~~~~Ipi~HiegG 147 (403) T 3ot5_A 91 KGQTLAEITSRVMNGINEVIAAENPDIVLVHGD-----TTTS--FA-----AGLATFYQQKMLGHVEAG 147 (403) T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHCCSEEEEETT-----CHHH--HH-----HHHHHHHTTCEEEEESCC T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC-----CCHH--HH-----HHHHHHHHCCCEEEEECC T ss_conf 999999999999999999999739999999688-----8048--99-----999999819978999646 No 76 >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Probab=28.68 E-value=19 Score=16.20 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=8.3 Q ss_pred CCEEEEECCCCCEEEE Q ss_conf 8069999788872058 Q gi|254780554|r 4 SIRIIGIDPGLRRTGW 19 (169) Q Consensus 4 ~MrILGIDPGl~~tG~ 19 (169) ++.|+|||.|+..+-. T Consensus 3 ~~~iigiDiG~~~~K~ 18 (355) T 3js6_A 3 NVYVMALDFGNGFVKG 18 (355) T ss_dssp CEEEEEEEECSSEEEE T ss_pred CCEEEEEECCCEEEEE T ss_conf 9839999937001999 No 77 >2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1 Probab=28.02 E-value=31 Score=14.91 Aligned_cols=51 Identities=25% Similarity=0.272 Sum_probs=31.9 Q ss_pred CCEEEEECCCCCEEEEEEEEEEC---------------------CEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHH Q ss_conf 80699997888720589999719---------------------968999833687388999888999999989998 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAG---------------------DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDV 59 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~---------------------~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~i 59 (169) +|||+-||.. +|.+|..| +.+-+++.|..-..-.....++...+++.+.++ T Consensus 6 P~kVvei~~~-----~A~vd~~Gv~r~v~l~lv~~~~~~~~~~vGDyVLVH~G~Ai~~ide~eA~etl~~l~el~~~ 77 (90) T 2ot2_A 6 PGQIRTIDGN-----QAKVDVCGIQRDVDLTLVGSCDENGQPRVGQWVLVHVGFAMSVINEAEARDTLDALQNMFDV 77 (90) T ss_dssp EEEEEEECSS-----EEEEECSSSEEEEECTTTCSBCTTSCBCTTCEEEEETTEEEEEECHHHHHHHHHHHHHHHHT T ss_pred CEEEEEECCC-----EEEEEECCCEEEEEEEECCCCCCCCCCCCCCEEEEECCHHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 4499998599-----79999389179999641226667764677889999614645018999999999999999877 No 78 >3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Probab=27.82 E-value=31 Score=14.89 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=33.0 Q ss_pred EEECHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHHHHHH Q ss_conf 7526067776531688889999999999962889999955--67899999997641 Q gi|254780554|r 104 SEYAPNTIKKAVIGVGHGDKKQIHMMLKMLMPESFFKGKD--AADALAIAVCHAYH 157 (169) Q Consensus 104 ~ey~P~~vKkavtG~G~A~KeqV~~mV~~ll~~~~~~~~D--~aDAlAiAl~h~~~ 157 (169) ||...++|||-++-+=..+++++.. +|+++....+.++| +--||+|++|-.+- T Consensus 158 yew~~~tik~qL~KdFqG~EaDLd~-LQrlID~g~I~~dd~~twQAmGIafGDILa 212 (269) T 3hlz_A 158 YEWVVSTVKQELKKDFQGVEEDLEK-IQQVIDSGKISPKKKDEWLAIGITVCAILT 212 (269) T ss_dssp HHHHHHHHHHHHCCCCCSSGGGHHH-HHHHHHTTCSCTTCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 8999999999974224572877999-999984378782148899976899999988 No 79 >1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3 Probab=26.97 E-value=32 Score=14.80 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=40.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHH Q ss_conf 899988899999998999862279627788503320241247889999999999998601617752606 Q gi|254780554|r 41 VRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPN 109 (169) Q Consensus 41 ~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~n~~t~~~lg~arGvi~l~~~~~~i~v~ey~P~ 109 (169) ...++.+.+..+...+.+++.+++||.|.+-.- ..++ ++ +.+++...+||+..+.-. T Consensus 68 ~~~~~~~~~~~~~~~~~~il~~~kpD~Vlv~GD-----r~~~--la-----~a~aa~~~~ipi~HiegG 124 (376) T 1v4v_A 68 ERQALPDLAARILPQAARALKEMGADYVLVHGD-----TLTT--FA-----VAWAAFLEGIPVGHVEAG 124 (376) T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTTCSEEEEESS-----CHHH--HH-----HHHHHHHTTCCEEEETCC T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECC-----CCHH--HH-----HHHHHHHCCCCEEEEECC T ss_conf 888899999999999999974059998999689-----7079--99-----999998629747986617 No 80 >1uax_A Ribonuclease HII, ribonuclease H2; RNA*DNA hybrid ribonucleotidohydrolase; 2.00A {Pyrococcus horikoshii OT3} SCOP: c.55.3.1 Probab=25.87 E-value=22 Score=15.74 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=31.0 Q ss_pred CEEEEECCCCC-------EEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE Q ss_conf 06999978887-------205899997199689998336873889998889999999899986227962778 Q gi|254780554|r 5 IRIIGIDPGLR-------RTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAA 69 (169) Q Consensus 5 MrILGIDPGl~-------~tG~avie~~~~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~va 69 (169) |||+|+|=.=+ ..+-++++.+.- ..+...| ++=+++.+..+| .+|++.+.+....|....+. T Consensus 1 ~~I~GvDEaGRG~~~GPlvvaav~~~~~~~-~~l~~~g-v~DSK~Ls~~kR-~~l~~~i~~~~~~~~v~~~~ 69 (220) T 1uax_A 1 MKVAGVDEAGRGPVIGPLVIGVAVIDEKNI-ERLRDIG-VKDSKQLTPGQR-EKLFSKLIDILDDYYVLLVT 69 (220) T ss_dssp CEEEEEEEECSSCSBSCEEEEEEEEEGGGH-HHHHHHT-GGGSTTSCHHHH-HHHHHHHHHHSSEEEEEEEC T ss_pred CEEEEECCCCCCCCCCCCEEEEEEECHHHH-HHHHHCC-CCCCCCCCHHHH-HHHHHHHCCCCCEEEEEECC T ss_conf 929805387866620331789999875651-3565359-986452999999-99976530234227999578 No 81 >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* Probab=24.71 E-value=35 Score=14.54 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=33.3 Q ss_pred EEEEECCCCCEEEEEEEEEECCEEEE--EEEEEEECCCC---CCHHHHHHHHHHHHHHHHHCCC Q ss_conf 69999788872058999971996899--98336873889---9988899999998999862279 Q gi|254780554|r 6 RIIGIDPGLRRTGWGIVDVAGDNLCF--VSSGTIVSCVR---QSLAFRLCQLYEGLTDVIKNWR 64 (169) Q Consensus 6 rILGIDPGl~~tG~avie~~~~~~~l--i~~g~I~t~~~---~~~~~Rl~~I~~~l~~ii~~~~ 64 (169) =+||||-|++++=.+++|.+++.... ..+..+.+.+. .+..+=...+.+.+.++++++. T Consensus 6 Y~lgIDiGTts~Ka~l~d~~G~i~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~l~~~~~~~~ 69 (554) T 3l0q_A 6 YFIGVDVGTGSARAGVFDLQGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDAVNQAD 69 (554) T ss_dssp EEEEEEECSSEEEEEEEETTSCEEEEEEEECCCEEEETTEEEECHHHHHHHHHHHHHHHHHHHT T ss_pred EEEEEEECCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCC T ss_conf 7999981454525458849998999999856617689994899999999999999999999749 No 82 >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone; HET: MSE; 1.70A {Methylobacterium extorquens AM1} SCOP: c.37.1.10 PDB: 2qm7_A* Probab=22.72 E-value=17 Score=16.47 Aligned_cols=74 Identities=16% Similarity=0.104 Sum_probs=39.6 Q ss_pred CCEEEEECCCCCEEEEEEEEEEC--CEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCC Q ss_conf 80699997888720589999719--968999833687388999888999999989998622796277885033202 Q gi|254780554|r 4 SIRIIGIDPGLRRTGWGIVDVAG--DNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPEEAAVEQVFVNK 77 (169) Q Consensus 4 ~MrILGIDPGl~~tG~avie~~~--~~~~li~~g~I~t~~~~~~~~Rl~~I~~~l~~ii~~~~Pd~vaiE~~F~~~ 77 (169) ..-|+.+||++..+|-+++.... .....-..-.++..+......-+..-....-.+++...-|.+.||.+-.+. T Consensus 85 kvavlavDpss~~tggallgD~~Rm~~~~~~~~~~ir~~~~~g~~~g~~~~~~~~i~~~~~~g~d~ilvEtVG~gq 160 (337) T 2qm8_A 85 KVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQ 160 (337) T ss_dssp CEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSS T ss_pred CEEEEECCCCCCCCHHCCCCHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 3112314876211220044126889985246622542530136531046778999999874498759997135554 No 83 >1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A Probab=20.94 E-value=30 Score=15.00 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=15.1 Q ss_pred CCCCHHHHHHHHHHHCCC Q ss_conf 888999999999996288 Q gi|254780554|r 119 GHGDKKQIHMMLKMLMPE 136 (169) Q Consensus 119 G~A~KeqV~~mV~~ll~~ 136 (169) .+|+|++|...|+.|+.+ T Consensus 19 ~KA~K~~i~~aV~~LL~L 36 (59) T 1d2d_A 19 EKAPKAKVTEAVECLLSL 36 (59) T ss_dssp TCCCHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHH T ss_conf 499999999999999999 No 84 >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleotide-binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O Probab=20.63 E-value=42 Score=14.04 Aligned_cols=60 Identities=13% Similarity=0.056 Sum_probs=31.9 Q ss_pred CCCCCEEEEECCCCCEEEEEEEEEECCEEEEEEEEEEECC-----CC---CCHHHHHHHHHHHHHHHHHCC Q ss_conf 9988069999788872058999971996899983368738-----89---998889999999899986227 Q gi|254780554|r 1 MRKSIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSC-----VR---QSLAFRLCQLYEGLTDVIKNW 63 (169) Q Consensus 1 ~~~~MrILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~-----~~---~~~~~Rl~~I~~~l~~ii~~~ 63 (169) |.+.=-|||||-|++++=.+++|.+++.+ .......+ .. .+..+=...+.+.+.+++.+. T Consensus 1 M~~~~y~lgIDiGTts~Ka~l~d~~g~~i---~~~~~~~~~~~~~~g~~Eqd~~~~~~~~~~~~~~~~~~~ 68 (506) T 3h3n_X 1 MAEKNYVMAIDQGTTSSRAIIFDRNGKKI---GSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIES 68 (506) T ss_dssp -CCCCEEEEEEECSSEEEEEEEETTSCEE---EEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCEE---EEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHC T ss_conf 99885899998322031000681899999---999985671658998188899999999999999999985 No 85 >2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} Probab=20.18 E-value=43 Score=13.98 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=24.5 Q ss_pred EEEECCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCH Q ss_conf 999978887205899997199689998336873889998 Q gi|254780554|r 7 IIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSL 45 (169) Q Consensus 7 ILGIDPGl~~tG~avie~~~~~~~li~~g~I~t~~~~~~ 45 (169) +|-||-|-+++=||+.+ +++ ++....+.+...... T Consensus 2 ~L~IDiGNT~iK~~l~~--~~~--~~~~~~~~t~~~~~~ 36 (268) T 2h3g_X 2 IFVLDVGNTNAVLGVFE--EGE--LRQHWRMETDRHKTE 36 (268) T ss_dssp EEEEEECSSEEEEEEEE--TTE--EEEEEEEECCTTCCH T ss_pred EEEEEECCCCCEEEEEE--CCE--EEEEEEEECCCCCCH T ss_conf 89999887710899998--999--999999845876677 Done!