RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780554|ref|YP_003064967.1| Holliday junction resolvase [Candidatus Liberibacter asiaticus str. psy62] (169 letters) >1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} (A:) Length = 158 Score = 171 bits (436), Expect = 3e-44 Identities = 63/155 (40%), Positives = 98/155 (63%), Gaps = 1/155 (0%) Query: 6 RIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRP 65 I+GIDPG R TG+G++ G L ++ SG I + V L RL +Y G+T++I ++P Sbjct: 2 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 60 Query: 66 EEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQ 125 + A+EQVF+ K+A + LKLGQAR +AI++ +PV EYA +K+ V+G+G +K Q Sbjct: 61 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 120 Query: 126 IHMMLKMLMPESFFKGKDAADALAIAVCHAYHANS 160 + M++ L+ DAADALAIA+ H + + + Sbjct: 121 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQN 155 >1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} (A:) Length = 150 Score = 88.0 bits (218), Expect = 5e-19 Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 12/126 (9%) Query: 4 SIRIIGIDPGLRRTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNW 63 S+RI+G+D G + G + D G + + I L+++IK++ Sbjct: 2 SLRILGLDLGTKTLGVALSDEXGWTAQGIETIKINE-------AEGDYGLSRLSELIKDY 54 Query: 64 RPEEAAVEQVFVNKDAVATLKLGQARAIAILSPALARIPV----SEYAPNTIKKAVIGVG 119 ++ + N + + ++ A + +PV +K +I Sbjct: 55 TIDKIVLGFPK-NXNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLTTXAAEKXLIAAD 113 Query: 120 HGDKKQ 125 +K+ Sbjct: 114 VSRQKR 119 >1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} (A:) Length = 138 Score = 31.0 bits (70), Expect = 0.088 Identities = 3/21 (14%), Positives = 6/21 (28%) Query: 6 RIIGIDPGLRRTGWGIVDVAG 26 + D G + G + Sbjct: 4 TLXAFDFGTKSIGVAVGQRIT 24 >1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} (A:) Length = 74 Score = 30.8 bits (70), Expect = 0.11 Identities = 5/15 (33%), Positives = 10/15 (66%) Query: 124 KQIHMMLKMLMPESF 138 +IH LK+ +P+ + Sbjct: 26 HKIHSFLKITVPKDW 40 >1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} (A:) Length = 98 Score = 29.7 bits (67), Expect = 0.20 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 15/68 (22%) Query: 6 RIIGIDPGLRRTGWGIVDVA-GDNLCFVSSG--TIVSCVRQSLAFRLCQLYEGLTDVIKN 62 R+ +D G R G +A G+ ++SG +V + L ++ Sbjct: 2 RVGALDVGEARIG-----LAVGEEGVPLASGRGYLVRKTLEEDVEALLDF-------VRR 49 Query: 63 WRPEEAAV 70 + V Sbjct: 50 EGLGKLVV 57 >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} (A:326-467) Length = 142 Score = 29.2 bits (65), Expect = 0.28 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 7/66 (10%) Query: 6 RIIGIDPGLR-RTGWGIVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWR 64 +G+DPGLR +VD G + + T+ ++ + Q L + + Sbjct: 5 ATLGLDPGLRTGVKVAVVDATGK---LLDTATVYPHAPKN---QWDQTLAVLAALCAKHQ 58 Query: 65 PEEAAV 70 E A+ Sbjct: 59 VELIAI 64 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} (F:1-76) Length = 76 Score = 26.6 bits (58), Expect = 1.8 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 10/32 (31%) Query: 122 DKKQIHMM---LKMLMPESFFKGKDAADALAI 150 +K+ + + LK+ D+A ALAI Sbjct: 18 EKQALKKLQASLKLYAD-------DSAPALAI 42 >1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} (A:) Length = 258 Score = 26.5 bits (58), Expect = 2.1 Identities = 6/31 (19%), Positives = 14/31 (45%) Query: 2 RKSIRIIGIDPGLRRTGWGIVDVAGDNLCFV 32 + R++GID G++ + D+ + Sbjct: 37 YPTSRVLGIDLGIKNFSYCFASQNEDSKVII 67 >2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A (A:82-154) Length = 73 Score = 25.8 bits (57), Expect = 3.3 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 12/67 (17%) Query: 10 IDPGLRRTGWG---IVDVAGDNLCFVSSGTIVSCVRQSLAFRLCQLYEGLTDVIKNWRPE 66 I P L T G +V++ + +G + + +T ++ P Sbjct: 16 IRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVM---------TVRVAVTQKLREKIPS 66 Query: 67 EAAVEQV 73 AAV+ + Sbjct: 67 IAAVQLI 73 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 25.5 bits (56), Expect = 4.0 Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 16/41 (39%) Query: 33 SSGTIVSCVRQ--SLAFRLCQLYEGLTDVIKNWRPEEAAVE 71 S ++S + + F Y G+T ++ AV Sbjct: 1 SLADVMS-IESLVEVVF-----YRGMT--MQV------AVP 27 >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} (A:1-190) Length = 190 Score = 24.4 bits (51), Expect = 8.3 Identities = 4/15 (26%), Positives = 5/15 (33%) Query: 121 GDKKQIHMMLKMLMP 135 G H L+P Sbjct: 2 GSSHHHHHHSSGLVP 16 >1e25_A Extended-spectrum beta-lactamase PER-1; hydrolase, antibiotic resistance, class A cephalosporinase; 1.9A {Pseudomonas aeruginosa} (A:39-161) Length = 123 Score = 24.3 bits (52), Expect = 8.9 Identities = 9/69 (13%), Positives = 17/69 (24%), Gaps = 6/69 (8%) Query: 100 RIPVSEYAPNTIKKA---VIGVGHGDKKQIHMMLKMLMPESFFKGKDAADALAIAVCHAY 156 + V+ A G + +L+ + S A D L V Sbjct: 31 TVIVNRAKVLQNTWAPIMKAYQGDEFSVPVQQLLQYSVSHSD---NVACDLLFELVGGPA 87 Query: 157 HANSGYYKI 165 + + Sbjct: 88 ALHDYIQSM 96 >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* (A:1-152,A:366-444) Length = 231 Score = 24.2 bits (52), Expect = 9.8 Identities = 8/41 (19%), Positives = 17/41 (41%) Query: 92 AILSPALARIPVSEYAPNTIKKAVIGVGHGDKKQIHMMLKM 132 L P+ + ++ P ++ A I VG + + M + Sbjct: 2 GALIPSSTLFNIFDFNPKKVRIAFIAVGLRGQTHVENMARR 42 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.323 0.136 0.406 Gapped Lambda K H 0.267 0.0592 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,319,630 Number of extensions: 54608 Number of successful extensions: 165 Number of sequences better than 10.0: 1 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 20 Length of query: 169 Length of database: 4,956,049 Length adjustment: 82 Effective length of query: 87 Effective length of database: 2,184,039 Effective search space: 190011393 Effective search space used: 190011393 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 51 (23.7 bits)