Query gi|254780555|ref|YP_003064968.1| hypothetical protein CLIBASIA_02210 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 41 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 09:11:07 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780555.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1n10a1 b.7.3.1 (A:1146-1240) 29.6 17 0.0013 17.2 2.6 27 13-39 2-31 (95) 2 d1x9ya2 d.17.1.4 (A:41-211) St 25.2 20 0.0015 16.8 2.3 18 19-37 56-73 (171) 3 d2ghsa1 b.68.6.1 (A:20-314) Re 24.3 22 0.0016 16.6 2.4 18 10-27 198-215 (295) 4 d1rwia_ b.68.9.1 (A:) Serine/t 23.5 28 0.0021 16.0 2.8 17 10-26 13-29 (260) 5 d2b1ya1 b.156.1.1 (A:4-104) Hy 21.4 4.6 0.00033 20.2 -1.6 26 9-35 53-78 (101) 6 d1dmha_ b.3.6.1 (A:) Catechol 17.6 22 0.0016 16.7 1.2 14 14-27 178-191 (309) 7 d1ibxa_ d.15.2.1 (A:) Caspase- 16.7 26 0.0019 16.2 1.4 19 6-24 36-54 (81) 8 d2burb1 b.3.6.1 (B:303-540) Pr 16.4 24 0.0018 16.4 1.2 15 14-28 125-139 (238) 9 d3eeqa2 c.152.1.1 (A:8-214) Co 16.2 40 0.0029 15.3 2.3 22 9-30 77-98 (207) 10 d1d4ba_ d.15.2.1 (A:) Cell dea 15.5 27 0.002 16.1 1.3 17 6-23 66-82 (122) No 1 >d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Probab=29.62 E-value=17 Score=17.20 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=14.8 Q ss_pred CEEEEEECCCC-EEEE--EEECCCCCEEEE Q ss_conf 28999917998-9999--821247602212 Q gi|254780555|r 13 PIRIVVDEDGN-YWFM--VKDVAGGLDFTS 39 (41) Q Consensus 13 pirivvdedgn-ywfm--vkdvaggldfts 39 (41) +|+.-|+|-+| |||+ |+.++|.-|..+ T Consensus 2 ~i~F~v~~gsnp~~lav~v~n~~g~gdI~~ 31 (95) T d1n10a1 2 KVTFHVEKGSNPNYLALLVKYVNGDGDVVA 31 (95) T ss_dssp CCEEEECTTCBTTEEEEEEECCCCSSCEEE T ss_pred CEEEEECCCCCCCEEEEEEEECCCCCCEEE T ss_conf 489998899986569999998489986999 No 2 >d1x9ya2 d.17.1.4 (A:41-211) Staphopain B, prodomain {Staphylococcus aureus [TaxId: 1280]} Probab=25.23 E-value=20 Score=16.83 Aligned_cols=18 Identities=28% Similarity=0.720 Sum_probs=9.8 Q ss_pred ECCCCEEEEEEECCCCCEE Q ss_conf 1799899998212476022 Q gi|254780555|r 19 DEDGNYWFMVKDVAGGLDF 37 (41) Q Consensus 19 dedgnywfmvkdvaggldf 37 (41) .|||||+|-|-. .|-..+ T Consensus 56 ~~DgnYYyPVLk-~g~i~Y 73 (171) T d1x9ya2 56 EEDNSYYYPVIK-DGKIVY 73 (171) T ss_dssp CBCSSEEEEEEE-TTEEEE T ss_pred CCCCCEEEEEEC-CCCEEE T ss_conf 568868646751-796799 No 3 >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Probab=24.27 E-value=22 Score=16.60 Aligned_cols=18 Identities=22% Similarity=0.363 Sum_probs=12.1 Q ss_pred CCCCEEEEEECCCCEEEE Q ss_conf 568289999179989999 Q gi|254780555|r 10 EHNPIRIVVDEDGNYWFM 27 (41) Q Consensus 10 ehnpirivvdedgnywfm 27 (41) +..|-.+.+|.+||+|.- T Consensus 198 ~g~pdG~~vD~~GnlWva 215 (295) T d2ghsa1 198 KGGMDGSVCDAEGHIWNA 215 (295) T ss_dssp SSEEEEEEECTTSCEEEE T ss_pred CCCCCCEEECCCCCEEEE T ss_conf 566632678699998953 No 4 >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Probab=23.51 E-value=28 Score=16.05 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=9.3 Q ss_pred CCCCEEEEEECCCCEEE Q ss_conf 56828999917998999 Q gi|254780555|r 10 EHNPIRIVVDEDGNYWF 26 (41) Q Consensus 10 ehnpirivvdedgnywf 26 (41) .+.|.-|.+|.|||.|+ T Consensus 13 ~~~P~~vavd~dG~i~v 29 (260) T d1rwia_ 13 RLSPSGVAVDSAGNVYV 29 (260) T ss_dssp CCCEEEEEECTTCCEEE T ss_pred CCCCCEEEECCCCCEEE T ss_conf 69878899969999999 No 5 >d2b1ya1 b.156.1.1 (A:4-104) Hypothetical protein Atu1913 {Agrobacterium tumefaciens [TaxId: 358]} Probab=21.43 E-value=4.6 Score=20.24 Aligned_cols=26 Identities=35% Similarity=0.663 Sum_probs=20.5 Q ss_pred CCCCCEEEEEECCCCEEEEEEECCCCC Q ss_conf 256828999917998999982124760 Q gi|254780555|r 9 LEHNPIRIVVDEDGNYWFMVKDVAGGL 35 (41) Q Consensus 9 lehnpirivvdedgnywfmvkdvaggl 35 (41) .+.+|+||.|-+.|. |..+-|..|+- T Consensus 53 ~~ksPvri~VP~tG~-W~lvVD~~G~~ 78 (101) T d2b1ya1 53 AKKSPIRIAVPETMH-WHLIIDAEGHS 78 (101) T ss_dssp CCSSSCCCCCCSSSC-CCCCCCCTTSS T ss_pred CCCCCEEEECCCCCE-EEEEEECCCCC T ss_conf 334866997478851-89999778971 No 6 >d1dmha_ b.3.6.1 (A:) Catechol 1,2-dioxygenase {Acinetobacter calcoaceticus [TaxId: 471]} Probab=17.58 E-value=22 Score=16.67 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=11.8 Q ss_pred EEEEEECCCCEEEE Q ss_conf 89999179989999 Q gi|254780555|r 14 IRIVVDEDGNYWFM 27 (41) Q Consensus 14 irivvdedgnywfm 27 (41) -|++.|++|+|||- T Consensus 178 G~~~Td~~G~y~F~ 191 (309) T d1dmha_ 178 RSIITDENGQYRVR 191 (309) T ss_dssp EEEECCTTSEEEEE T ss_pred EEEEECCCCEEEEE T ss_conf 18930899759999 No 7 >d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=16.74 E-value=26 Score=16.24 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=14.3 Q ss_pred CCCCCCCCEEEEEECCCCE Q ss_conf 1002568289999179989 Q gi|254780555|r 6 PFNLEHNPIRIVVDEDGNY 24 (41) Q Consensus 6 pfnlehnpirivvdedgny 24 (41) -|++.-.+++||.+|||.- T Consensus 36 ~l~~~~~~~~lvLeeDGT~ 54 (81) T d1ibxa_ 36 RFQLPERGSRLCLYEDGTE 54 (81) T ss_dssp HTTCCTTTSEEEESSSCSC T ss_pred HHCCCCCCCEEEEECCCCE T ss_conf 8589986868999368959 No 8 >d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Probab=16.37 E-value=24 Score=16.42 Aligned_cols=15 Identities=33% Similarity=0.663 Sum_probs=12.4 Q ss_pred EEEEEECCCCEEEEE Q ss_conf 899991799899998 Q gi|254780555|r 14 IRIVVDEDGNYWFMV 28 (41) Q Consensus 14 irivvdedgnywfmv 28 (41) =|...|++|.|+|.- T Consensus 125 Gr~~TD~~G~y~F~T 139 (238) T d2burb1 125 GRMLTDDNGYYVFRT 139 (238) T ss_dssp EEEECCTTSEEEEEE T ss_pred EEEEECCCCEEEEEE T ss_conf 899869998499995 No 9 >d3eeqa2 c.152.1.1 (A:8-214) Cobalamin biosynthesis protein G, CbiG {Sulfolobus solfataricus [TaxId: 2287]} Probab=16.24 E-value=40 Score=15.25 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=16.6 Q ss_pred CCCCCEEEEEECCCCEEEEEEE Q ss_conf 2568289999179989999821 Q gi|254780555|r 9 LEHNPIRIVVDEDGNYWFMVKD 30 (41) Q Consensus 9 lehnpirivvdedgnywfmvkd 30 (41) -.+.|--|||||+|+|-.-+-. T Consensus 77 K~~DPaVvvvde~G~~vIpLL~ 98 (207) T d3eeqa2 77 KTEDPAIVCIDDKINYVIPLLG 98 (207) T ss_dssp TTTCCEEEEECTTCCEEEEEEC T ss_pred CCCCCCEEEEECCCCEEEEEEC T ss_conf 5669988999089999988505 No 10 >d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=15.45 E-value=27 Score=16.13 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=12.9 Q ss_pred CCCCCCCCEEEEEECCCC Q ss_conf 100256828999917998 Q gi|254780555|r 6 PFNLEHNPIRIVVDEDGN 23 (41) Q Consensus 6 pfnlehnpirivvdedgn 23 (41) -|++. +|++||.+|||. T Consensus 66 ~L~i~-~~~~lvLeeDGT 82 (122) T d1d4ba_ 66 TLLLN-GVLTLVLEEDGT 82 (122) T ss_dssp HHSCC-SSCEEEETTTTE T ss_pred HHCCC-CCEEEEEECCCC T ss_conf 83999-873899947997 Done!