Query         gi|254780555|ref|YP_003064968.1| hypothetical protein CLIBASIA_02210 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 41
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 09:11:07 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780555.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1n10a1 b.7.3.1 (A:1146-1240)   29.6      17  0.0013   17.2   2.6   27   13-39      2-31  (95)
  2 d1x9ya2 d.17.1.4 (A:41-211) St  25.2      20  0.0015   16.8   2.3   18   19-37     56-73  (171)
  3 d2ghsa1 b.68.6.1 (A:20-314) Re  24.3      22  0.0016   16.6   2.4   18   10-27    198-215 (295)
  4 d1rwia_ b.68.9.1 (A:) Serine/t  23.5      28  0.0021   16.0   2.8   17   10-26     13-29  (260)
  5 d2b1ya1 b.156.1.1 (A:4-104) Hy  21.4     4.6 0.00033   20.2  -1.6   26    9-35     53-78  (101)
  6 d1dmha_ b.3.6.1 (A:) Catechol   17.6      22  0.0016   16.7   1.2   14   14-27    178-191 (309)
  7 d1ibxa_ d.15.2.1 (A:) Caspase-  16.7      26  0.0019   16.2   1.4   19    6-24     36-54  (81)
  8 d2burb1 b.3.6.1 (B:303-540) Pr  16.4      24  0.0018   16.4   1.2   15   14-28    125-139 (238)
  9 d3eeqa2 c.152.1.1 (A:8-214) Co  16.2      40  0.0029   15.3   2.3   22    9-30     77-98  (207)
 10 d1d4ba_ d.15.2.1 (A:) Cell dea  15.5      27   0.002   16.1   1.3   17    6-23     66-82  (122)

No 1  
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}
Probab=29.62  E-value=17  Score=17.20  Aligned_cols=27  Identities=26%  Similarity=0.396  Sum_probs=14.8

Q ss_pred             CEEEEEECCCC-EEEE--EEECCCCCEEEE
Q ss_conf             28999917998-9999--821247602212
Q gi|254780555|r   13 PIRIVVDEDGN-YWFM--VKDVAGGLDFTS   39 (41)
Q Consensus        13 pirivvdedgn-ywfm--vkdvaggldfts   39 (41)
                      +|+.-|+|-+| |||+  |+.++|.-|..+
T Consensus         2 ~i~F~v~~gsnp~~lav~v~n~~g~gdI~~   31 (95)
T d1n10a1           2 KVTFHVEKGSNPNYLALLVKYVNGDGDVVA   31 (95)
T ss_dssp             CCEEEECTTCBTTEEEEEEECCCCSSCEEE
T ss_pred             CEEEEECCCCCCCEEEEEEEECCCCCCEEE
T ss_conf             489998899986569999998489986999


No 2  
>d1x9ya2 d.17.1.4 (A:41-211) Staphopain B, prodomain {Staphylococcus aureus [TaxId: 1280]}
Probab=25.23  E-value=20  Score=16.83  Aligned_cols=18  Identities=28%  Similarity=0.720  Sum_probs=9.8

Q ss_pred             ECCCCEEEEEEECCCCCEE
Q ss_conf             1799899998212476022
Q gi|254780555|r   19 DEDGNYWFMVKDVAGGLDF   37 (41)
Q Consensus        19 dedgnywfmvkdvaggldf   37 (41)
                      .|||||+|-|-. .|-..+
T Consensus        56 ~~DgnYYyPVLk-~g~i~Y   73 (171)
T d1x9ya2          56 EEDNSYYYPVIK-DGKIVY   73 (171)
T ss_dssp             CBCSSEEEEEEE-TTEEEE
T ss_pred             CCCCCEEEEEEC-CCCEEE
T ss_conf             568868646751-796799


No 3  
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}
Probab=24.27  E-value=22  Score=16.60  Aligned_cols=18  Identities=22%  Similarity=0.363  Sum_probs=12.1

Q ss_pred             CCCCEEEEEECCCCEEEE
Q ss_conf             568289999179989999
Q gi|254780555|r   10 EHNPIRIVVDEDGNYWFM   27 (41)
Q Consensus        10 ehnpirivvdedgnywfm   27 (41)
                      +..|-.+.+|.+||+|.-
T Consensus       198 ~g~pdG~~vD~~GnlWva  215 (295)
T d2ghsa1         198 KGGMDGSVCDAEGHIWNA  215 (295)
T ss_dssp             SSEEEEEEECTTSCEEEE
T ss_pred             CCCCCCEEECCCCCEEEE
T ss_conf             566632678699998953


No 4  
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.51  E-value=28  Score=16.05  Aligned_cols=17  Identities=29%  Similarity=0.567  Sum_probs=9.3

Q ss_pred             CCCCEEEEEECCCCEEE
Q ss_conf             56828999917998999
Q gi|254780555|r   10 EHNPIRIVVDEDGNYWF   26 (41)
Q Consensus        10 ehnpirivvdedgnywf   26 (41)
                      .+.|.-|.+|.|||.|+
T Consensus        13 ~~~P~~vavd~dG~i~v   29 (260)
T d1rwia_          13 RLSPSGVAVDSAGNVYV   29 (260)
T ss_dssp             CCCEEEEEECTTCCEEE
T ss_pred             CCCCCEEEECCCCCEEE
T ss_conf             69878899969999999


No 5  
>d2b1ya1 b.156.1.1 (A:4-104) Hypothetical protein Atu1913 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=21.43  E-value=4.6  Score=20.24  Aligned_cols=26  Identities=35%  Similarity=0.663  Sum_probs=20.5

Q ss_pred             CCCCCEEEEEECCCCEEEEEEECCCCC
Q ss_conf             256828999917998999982124760
Q gi|254780555|r    9 LEHNPIRIVVDEDGNYWFMVKDVAGGL   35 (41)
Q Consensus         9 lehnpirivvdedgnywfmvkdvaggl   35 (41)
                      .+.+|+||.|-+.|. |..+-|..|+-
T Consensus        53 ~~ksPvri~VP~tG~-W~lvVD~~G~~   78 (101)
T d2b1ya1          53 AKKSPIRIAVPETMH-WHLIIDAEGHS   78 (101)
T ss_dssp             CCSSSCCCCCCSSSC-CCCCCCCTTSS
T ss_pred             CCCCCEEEECCCCCE-EEEEEECCCCC
T ss_conf             334866997478851-89999778971


No 6  
>d1dmha_ b.3.6.1 (A:) Catechol 1,2-dioxygenase {Acinetobacter calcoaceticus [TaxId: 471]}
Probab=17.58  E-value=22  Score=16.67  Aligned_cols=14  Identities=36%  Similarity=0.641  Sum_probs=11.8

Q ss_pred             EEEEEECCCCEEEE
Q ss_conf             89999179989999
Q gi|254780555|r   14 IRIVVDEDGNYWFM   27 (41)
Q Consensus        14 irivvdedgnywfm   27 (41)
                      -|++.|++|+|||-
T Consensus       178 G~~~Td~~G~y~F~  191 (309)
T d1dmha_         178 RSIITDENGQYRVR  191 (309)
T ss_dssp             EEEECCTTSEEEEE
T ss_pred             EEEEECCCCEEEEE
T ss_conf             18930899759999


No 7  
>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.74  E-value=26  Score=16.24  Aligned_cols=19  Identities=32%  Similarity=0.471  Sum_probs=14.3

Q ss_pred             CCCCCCCCEEEEEECCCCE
Q ss_conf             1002568289999179989
Q gi|254780555|r    6 PFNLEHNPIRIVVDEDGNY   24 (41)
Q Consensus         6 pfnlehnpirivvdedgny   24 (41)
                      -|++.-.+++||.+|||.-
T Consensus        36 ~l~~~~~~~~lvLeeDGT~   54 (81)
T d1ibxa_          36 RFQLPERGSRLCLYEDGTE   54 (81)
T ss_dssp             HTTCCTTTSEEEESSSCSC
T ss_pred             HHCCCCCCCEEEEECCCCE
T ss_conf             8589986868999368959


No 8  
>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]}
Probab=16.37  E-value=24  Score=16.42  Aligned_cols=15  Identities=33%  Similarity=0.663  Sum_probs=12.4

Q ss_pred             EEEEEECCCCEEEEE
Q ss_conf             899991799899998
Q gi|254780555|r   14 IRIVVDEDGNYWFMV   28 (41)
Q Consensus        14 irivvdedgnywfmv   28 (41)
                      =|...|++|.|+|.-
T Consensus       125 Gr~~TD~~G~y~F~T  139 (238)
T d2burb1         125 GRMLTDDNGYYVFRT  139 (238)
T ss_dssp             EEEECCTTSEEEEEE
T ss_pred             EEEEECCCCEEEEEE
T ss_conf             899869998499995


No 9  
>d3eeqa2 c.152.1.1 (A:8-214) Cobalamin biosynthesis protein G, CbiG {Sulfolobus solfataricus [TaxId: 2287]}
Probab=16.24  E-value=40  Score=15.25  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=16.6

Q ss_pred             CCCCCEEEEEECCCCEEEEEEE
Q ss_conf             2568289999179989999821
Q gi|254780555|r    9 LEHNPIRIVVDEDGNYWFMVKD   30 (41)
Q Consensus         9 lehnpirivvdedgnywfmvkd   30 (41)
                      -.+.|--|||||+|+|-.-+-.
T Consensus        77 K~~DPaVvvvde~G~~vIpLL~   98 (207)
T d3eeqa2          77 KTEDPAIVCIDDKINYVIPLLG   98 (207)
T ss_dssp             TTTCCEEEEECTTCCEEEEEEC
T ss_pred             CCCCCCEEEEECCCCEEEEEEC
T ss_conf             5669988999089999988505


No 10 
>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.45  E-value=27  Score=16.13  Aligned_cols=17  Identities=29%  Similarity=0.614  Sum_probs=12.9

Q ss_pred             CCCCCCCCEEEEEECCCC
Q ss_conf             100256828999917998
Q gi|254780555|r    6 PFNLEHNPIRIVVDEDGN   23 (41)
Q Consensus         6 pfnlehnpirivvdedgn   23 (41)
                      -|++. +|++||.+|||.
T Consensus        66 ~L~i~-~~~~lvLeeDGT   82 (122)
T d1d4ba_          66 TLLLN-GVLTLVLEEDGT   82 (122)
T ss_dssp             HHSCC-SSCEEEETTTTE
T ss_pred             HHCCC-CCEEEEEECCCC
T ss_conf             83999-873899947997


Done!