BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780555|ref|YP_003064968.1| hypothetical protein
CLIBASIA_02210 [Candidatus Liberibacter asiaticus str. psy62]
         (41 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780555|ref|YP_003064968.1| hypothetical protein CLIBASIA_02210 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040232|gb|ACT57028.1| hypothetical protein CLIBASIA_02210 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 41

 Score = 82.3 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/41 (100%), Positives = 41/41 (100%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTSIT 41
          MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTSIT
Sbjct: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTSIT 41


>gi|254780125|ref|YP_003064538.1| prophage antirepressor [Candidatus Liberibacter asiaticus str.
          psy62]
 gi|254039802|gb|ACT56598.1| prophage antirepressor [Candidatus Liberibacter asiaticus str.
          psy62]
 gi|317120696|gb|ADV02519.1| putative Bro-N family phage antirepressor [Liberibacter phage
          SC1]
 gi|317120739|gb|ADV02561.1| putative Bro-N family phage antirepressor [Liberibacter phage
          SC2]
 gi|317120800|gb|ADV02621.1| putative Bro-N family phage antirepressor [Liberibacter phage
          SC2]
 gi|317120840|gb|ADV02661.1| putative Bro-N family phage antirepressor [Liberibacter phage
          SC1]
          Length = 262

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 24/37 (64%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDF 37
          MS + PF  E N IR +VD+D N WF+ KDVA  L +
Sbjct: 1  MSTITPFEFESNKIRTIVDKDQNIWFVAKDVATALGY 37


>gi|53803190|ref|YP_115046.1| hypothetical protein MCA2642 [Methylococcus capsulatus str. Bath]
 gi|53756951|gb|AAU91242.1| conserved domain protein [Methylococcus capsulatus str. Bath]
          Length = 252

 Score = 42.3 bits (98), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 2  SDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDF 37
          +++IPF+ E  P+R+V D  G  WF+  DVA  L++
Sbjct: 3  TELIPFDFEGRPVRVVTDAQGEPWFVAADVAQSLEY 38


>gi|315122913|ref|YP_004063402.1| prophage antirepressor [Candidatus Liberibacter solanacearum
          CLso-ZC1]
 gi|313496315|gb|ADR52914.1| prophage antirepressor [Candidatus Liberibacter solanacearum
          CLso-ZC1]
          Length = 261

 Score = 41.5 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDF 37
          MS++IPF  E N IR VVD+D    F+ KD+A  L +
Sbjct: 1  MSNIIPFEFESNKIRTVVDKDNTILFVAKDIAEALGY 37


>gi|315121946|ref|YP_004062435.1| prophage antirepressor [Candidatus Liberibacter solanacearum
          CLso-ZC1]
 gi|313495348|gb|ADR51947.1| prophage antirepressor [Candidatus Liberibacter solanacearum
          CLso-ZC1]
          Length = 262

 Score = 41.1 bits (95), Expect = 0.056,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDF 37
          MS +IPF  E N IR VVD+D    F+ KD+A  L +
Sbjct: 1  MSSIIPFEFESNKIRTVVDKDNTILFVAKDIAEALGY 37


>gi|255020306|ref|ZP_05292374.1| prophage antirepressor [Acidithiobacillus caldus ATCC 51756]
 gi|254970226|gb|EET27720.1| prophage antirepressor [Acidithiobacillus caldus ATCC 51756]
          Length = 257

 Score = 40.3 bits (93), Expect = 0.093,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 2  SDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTSIT 41
          +++IPF+ E  P+R+V D  G  WF+  DV   L+  + T
Sbjct: 3  TELIPFDFEGRPVRVVTDAQGEPWFVAADVCAVLELPNTT 42


>gi|9107730|gb|AAF85322.1|AE004059_12 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 530

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 1   MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTS 39
           M+ + PF  E + +R VVD+ G  WF+ KDVA  L +T+
Sbjct: 161 MNAITPFQFESHAVRTVVDDHGEVWFVGKDVADVLGYTN 199


>gi|77747608|ref|NP_299802.2| hypothetical protein XF2524 [Xylella fastidiosa 9a5c]
          Length = 504

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 1   MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTS 39
           M+ + PF  E + +R VVD+ G  WF+ KDVA  L +T+
Sbjct: 135 MNAITPFQFESHAVRTVVDDHGEVWFVGKDVADVLGYTN 173


>gi|15837286|ref|NP_297974.1| hypothetical protein XF0684 [Xylella fastidiosa 9a5c]
 gi|9105566|gb|AAF83494.1|AE003912_6 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 503

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 1   MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTS 39
           M+ + PF  E + +R VVD+ G  WF+ KDVA  L +T+
Sbjct: 135 MNAITPFQFESHAVRTVVDDHGEVWFVGKDVADVLGYTN 173


>gi|28199601|ref|NP_779915.1| hypothetical protein PD1726 [Xylella fastidiosa Temecula1]
 gi|77747679|ref|NP_779339.2| hypothetical protein PD1133 [Xylella fastidiosa Temecula1]
 gi|28057716|gb|AAO29564.1| phage-related protein [Xylella fastidiosa Temecula1]
          Length = 503

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 1   MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTS 39
           M+ + PF  E + +R VVD+ G  WF+ KDVA  L +T+
Sbjct: 135 MNAITPFQFESHAVRTVVDDHGEVWFVGKDVADVLGYTN 173


>gi|182681747|ref|YP_001829907.1| prophage antirepressor [Xylella fastidiosa M23]
 gi|182682342|ref|YP_001830502.1| prophage antirepressor [Xylella fastidiosa M23]
 gi|28057123|gb|AAO28988.1| phage-related protein [Xylella fastidiosa Temecula1]
 gi|182631857|gb|ACB92633.1| prophage antirepressor [Xylella fastidiosa M23]
 gi|182632452|gb|ACB93228.1| prophage antirepressor [Xylella fastidiosa M23]
 gi|307578623|gb|ADN62592.1| prophage antirepressor [Xylella fastidiosa subsp. fastidiosa GB514]
 gi|307580176|gb|ADN64145.1| prophage antirepressor [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 535

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 1   MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTS 39
           M+ + PF  E + +R VVD+ G  WF+ KDVA  L +T+
Sbjct: 167 MNAITPFQFESHAVRTVVDDHGEVWFVGKDVADVLGYTN 205


>gi|71276718|ref|ZP_00652986.1| BRO, N-terminal [Xylella fastidiosa Dixon]
 gi|71276734|ref|ZP_00653001.1| BRO, N-terminal [Xylella fastidiosa Dixon]
 gi|71900867|ref|ZP_00682983.1| BRO, N-terminal [Xylella fastidiosa Ann-1]
 gi|71902520|ref|ZP_00684445.1| BRO, N-terminal [Xylella fastidiosa Ann-1]
 gi|71162461|gb|EAO12196.1| BRO, N-terminal [Xylella fastidiosa Dixon]
 gi|71162476|gb|EAO12210.1| BRO, N-terminal [Xylella fastidiosa Dixon]
 gi|71727755|gb|EAO30023.1| BRO, N-terminal [Xylella fastidiosa Ann-1]
 gi|71729338|gb|EAO31453.1| BRO, N-terminal [Xylella fastidiosa Ann-1]
          Length = 370

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTS 39
          M+ + PF+ E   +R VVD+ G  WF+ KDVA  L +T+
Sbjct: 1  MNAITPFHFESQAVRTVVDDHGEVWFVGKDVADVLGYTN 39


>gi|273810427|ref|YP_003344898.1| Bro-N family protein [Xylella phage Xfas53]
 gi|257097802|gb|ACV41108.1| Bro-N family protein [Xylella phage Xfas53]
          Length = 431

 Score = 39.6 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 1   MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTS 39
           M+ + PF  E   +R VVD+ G  WF+ KDVA  L +T+
Sbjct: 180 MNAITPFQFESQAVRTVVDDHGEVWFVGKDVADVLGYTN 218


>gi|71898928|ref|ZP_00681095.1| BRO, N-terminal [Xylella fastidiosa Ann-1]
 gi|71731340|gb|EAO33404.1| BRO, N-terminal [Xylella fastidiosa Ann-1]
          Length = 387

 Score = 39.6 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 1   MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTS 39
           M+ + PF  E   +R VVD+ G  WF+ KDVA  L +T+
Sbjct: 137 MNAITPFQFESQAVRTVVDDHGEVWFVGKDVADVLGYTN 175


>gi|169633393|ref|YP_001707129.1| hypothetical protein ABSDF1750 [Acinetobacter baumannii SDF]
 gi|169152185|emb|CAP01089.1| hypothetical protein; putative Prophage antirepressor
          [Acinetobacter baumannii]
          Length = 260

 Score = 39.6 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDF 37
          MS+M  FN   N IR +V +DG  WF+  DVA  L +
Sbjct: 1  MSEMSVFNFNQNEIRTIVKDDGEIWFIAADVATVLGY 37


>gi|169634092|ref|YP_001707828.1| hypothetical protein ABSDF2615 [Acinetobacter baumannii SDF]
 gi|169152884|emb|CAP01922.1| conserved hypothetical protein; putative Prophage antirepressor
          [Acinetobacter baumannii]
          Length = 94

 Score = 39.6 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDF 37
          MS+M  FN   N IR +V +DG  WF+  DVA  L +
Sbjct: 1  MSEMSVFNFNQNEIRTIVKDDGEIWFVAADVATVLGY 37


>gi|315122933|ref|YP_004063422.1| prophage antirepressor [Candidatus Liberibacter solanacearum
          CLso-ZC1]
 gi|313496335|gb|ADR52934.1| prophage antirepressor [Candidatus Liberibacter solanacearum
          CLso-ZC1]
          Length = 264

 Score = 39.2 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 3  DMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDF 37
          ++IPF  E N IR VVDED    F+ KD+A  L +
Sbjct: 5  NIIPFEFESNRIRTVVDEDNTILFVAKDIAEALGY 39


>gi|315121965|ref|YP_004062454.1| prophage antirepressor [Candidatus Liberibacter solanacearum
          CLso-ZC1]
 gi|313495367|gb|ADR51966.1| prophage antirepressor [Candidatus Liberibacter solanacearum
          CLso-ZC1]
          Length = 263

 Score = 39.2 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 3  DMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDF 37
          ++IPF  E N IR VVDED    F+ KD+A  L +
Sbjct: 5  NIIPFEFESNRIRTVVDEDNTILFVAKDIAEALGY 39


>gi|184157378|ref|YP_001845717.1| prophage antirepressor [Acinetobacter baumannii ACICU]
 gi|183208972|gb|ACC56370.1| Prophage antirepressor [Acinetobacter baumannii ACICU]
          Length = 250

 Score = 38.8 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFT 38
          MS++  FN   N IR V+ +DG  WF+  DVA  L+++
Sbjct: 1  MSNISVFNFNQNEIRTVLKDDGEIWFVASDVATVLEYS 38


>gi|283852564|ref|ZP_06369831.1| prophage antirepressor [Desulfovibrio sp. FW1012B]
 gi|283572012|gb|EFC20005.1| prophage antirepressor [Desulfovibrio sp. FW1012B]
          Length = 323

 Score = 38.4 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 2  SDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFT 38
          S+ +PF  E + IR V++ DGN WF+ +DV   ++ +
Sbjct: 13 SNPVPFAFESHEIRTVINGDGNPWFVARDVCAAMNIS 49


>gi|15838264|ref|NP_298952.1| hypothetical protein XF1663 [Xylella fastidiosa 9a5c]
 gi|9106723|gb|AAF84472.1|AE003992_8 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 381

 Score = 38.0 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTS 39
          M+ + PF+ E   +R VVD+ G  WF+ KDVA  L + +
Sbjct: 12 MNAITPFHFESQAVRTVVDDHGEVWFVGKDVADVLGYAN 50


>gi|71901490|ref|ZP_00683577.1| BRO, N-terminal [Xylella fastidiosa Ann-1]
 gi|71728746|gb|EAO30890.1| BRO, N-terminal [Xylella fastidiosa Ann-1]
          Length = 412

 Score = 38.0 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 1   MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTS 39
           M+ + PF  E + +R VVD+ G  WF+ KDVA  L + +
Sbjct: 161 MNAITPFQFESHAVRTVVDDHGEVWFVGKDVADVLGYAN 199


>gi|330810751|ref|YP_004355213.1| phage regulatory protein [Pseudomonas brassicacearum subsp.
          brassicacearum NFM421]
 gi|327378859|gb|AEA70209.1| Putative phage regulatory protein [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
          Length = 283

 Score = 38.0 bits (87), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 24/36 (66%)

Query: 2  SDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDF 37
          + +IPF+ +   IR++ DE G+ WF+ +DVA  L +
Sbjct: 28 NSVIPFDFDGGAIRVITDELGDPWFVARDVADALGY 63


>gi|144898901|emb|CAM75765.1| BRO, N-terminal [Magnetospirillum gryphiswaldense MSR-1]
          Length = 300

 Score = 37.6 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTSIT 41
          M++++PF  E + IR VVD DG  WF+ KDVA  L + + T
Sbjct: 1  MTNIVPFEFEGSAIR-VVDIDGAPWFVGKDVAERLGYANAT 40


>gi|258543092|ref|YP_003188525.1| prophage antirepressor [Acetobacter pasteurianus IFO 3283-01]
 gi|256634170|dbj|BAI00146.1| prophage antirepressor [Acetobacter pasteurianus IFO 3283-01]
 gi|256637230|dbj|BAI03199.1| prophage antirepressor [Acetobacter pasteurianus IFO 3283-03]
 gi|256640282|dbj|BAI06244.1| prophage antirepressor [Acetobacter pasteurianus IFO 3283-07]
 gi|256643339|dbj|BAI09294.1| prophage antirepressor [Acetobacter pasteurianus IFO 3283-22]
 gi|256646394|dbj|BAI12342.1| prophage antirepressor [Acetobacter pasteurianus IFO 3283-26]
 gi|256649447|dbj|BAI15388.1| prophage antirepressor [Acetobacter pasteurianus IFO 3283-32]
 gi|256652433|dbj|BAI18367.1| prophage antirepressor [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655491|dbj|BAI21418.1| prophage antirepressor [Acetobacter pasteurianus IFO 3283-12]
          Length = 234

 Score = 37.6 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTS 39
          MS++IPFN E + +R V+  DG  WF++ DV   L+ T+
Sbjct: 1  MSNIIPFNFEDHAVR-VITRDGEPWFVLADVCDVLEHTN 38


>gi|108763205|ref|YP_630118.1| putative bacteriophage L54a, antirepressor [Myxococcus xanthus DK
          1622]
 gi|108467085|gb|ABF92270.1| putative bacteriophage L54a, antirepressor [Myxococcus xanthus DK
          1622]
          Length = 270

 Score = 37.6 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 24/37 (64%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDF 37
          M+  + F+ E + +R+V D  G +WF+ KD+A  L++
Sbjct: 1  MNQPVAFDFESHHVRVVTDAHGEHWFVAKDIAESLEY 37


>gi|28198899|ref|NP_779213.1| hypothetical protein PD1001 [Xylella fastidiosa Temecula1]
 gi|182681602|ref|YP_001829762.1| prophage antirepressor [Xylella fastidiosa M23]
 gi|28056997|gb|AAO28862.1| phage-related protein [Xylella fastidiosa Temecula1]
 gi|182631712|gb|ACB92488.1| prophage antirepressor [Xylella fastidiosa M23]
 gi|307580036|gb|ADN64005.1| prophage antirepressor [Xylella fastidiosa subsp. fastidiosa
          GB514]
          Length = 262

 Score = 37.6 bits (86), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTS 39
          M+ M PF  E + +R VVD+ G  WF+  DVA  L + +
Sbjct: 12 MNAMTPFQFESHAVRTVVDDHGEVWFVGTDVATVLGYAN 50


>gi|312962012|ref|ZP_07776509.1| hypothetical protein PFWH6_3932 [Pseudomonas fluorescens WH6]
 gi|311283822|gb|EFQ62406.1| hypothetical protein PFWH6_3932 [Pseudomonas fluorescens WH6]
          Length = 283

 Score = 36.9 bits (84), Expect = 0.87,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 25/37 (67%)

Query: 2  SDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFT 38
          S +IPF+ +   IR++ D+ G+ WF+ +DVA  L ++
Sbjct: 28 SAVIPFDFDGAAIRVITDKLGDPWFVARDVADALGYS 64


>gi|71276717|ref|ZP_00652985.1| BRO, N-terminal [Xylella fastidiosa Dixon]
 gi|71900866|ref|ZP_00682982.1| BRO, N-terminal [Xylella fastidiosa Ann-1]
 gi|71162475|gb|EAO12209.1| BRO, N-terminal [Xylella fastidiosa Dixon]
 gi|71729337|gb|EAO31452.1| BRO, N-terminal [Xylella fastidiosa Ann-1]
          Length = 264

 Score = 36.9 bits (84), Expect = 0.93,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 4  MIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTSIT 41
          +IPF+   + +R+V+  DGN WF+ KDV   LD+ + +
Sbjct: 5  IIPFDFHSHVVRVVM-RDGNPWFVAKDVMDALDYAATS 41


>gi|222112392|ref|YP_002554656.1| prophage antirepressor [Acidovorax ebreus TPSY]
 gi|221731836|gb|ACM34656.1| prophage antirepressor [Acidovorax ebreus TPSY]
          Length = 252

 Score = 36.9 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLD 36
          MS +IPF  E + +R+ VD+ G  WF   DV   L+
Sbjct: 1  MSAIIPFQFEAHAVRVQVDDQGQPWFNATDVCDALE 36


>gi|71899743|ref|ZP_00681894.1| BRO, N-terminal [Xylella fastidiosa Ann-1]
 gi|71730438|gb|EAO32518.1| BRO, N-terminal [Xylella fastidiosa Ann-1]
          Length = 203

 Score = 36.5 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 4  MIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTSIT 41
          +IPF+   + +R+V+  DGN WF+ KDV   LD+   +
Sbjct: 5  IIPFDFHSHVVRVVM-RDGNPWFVAKDVMDALDYAETS 41


>gi|71899745|ref|ZP_00681896.1| BRO, N-terminal [Xylella fastidiosa Ann-1]
 gi|71730440|gb|EAO32520.1| BRO, N-terminal [Xylella fastidiosa Ann-1]
          Length = 251

 Score = 36.1 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTS 39
          M+ + PF+ E + +R VVD+ G  WF+  DVA  L + +
Sbjct: 1  MNAITPFHFESHAVRTVVDDHGEVWFVGTDVATVLGYAN 39


>gi|170720501|ref|YP_001748189.1| prophage antirepressor [Pseudomonas putida W619]
 gi|169758504|gb|ACA71820.1| prophage antirepressor [Pseudomonas putida W619]
          Length = 256

 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 3  DMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFT 38
          ++IPFN   + IR+V D     WF+ KD+A  L ++
Sbjct: 2  NLIPFNFNGHEIRVVKDHANEPWFVAKDIADDLGYS 37


>gi|292491104|ref|YP_003526543.1| BRO domain protein [Nitrosococcus halophilus Nc4]
 gi|291579699|gb|ADE14156.1| BRO domain protein [Nitrosococcus halophilus Nc4]
          Length = 316

 Score = 35.3 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLD 36
          M+D+IPFN + + IR+V+  DG  WF+ KD+   L+
Sbjct: 1  MNDLIPFNFDGHDIRVVMI-DGEPWFVAKDLCDVLE 35


>gi|160898695|ref|YP_001564277.1| prophage antirepressor [Delftia acidovorans SPH-1]
 gi|160364279|gb|ABX35892.1| prophage antirepressor [Delftia acidovorans SPH-1]
          Length = 270

 Score = 34.9 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 25/38 (65%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFT 38
          MS++ PF  + + I ++ ++ G  WF+ K+V+G L ++
Sbjct: 1  MSNITPFKFQDHEITVLTNDSGEPWFIAKEVSGVLGYS 38


>gi|310286594|ref|YP_003937852.1| phage anti-repressor protein [Bifidobacterium bifidum S17]
 gi|309250530|gb|ADO52278.1| putative phage anti-repressor protein [Bifidobacterium bifidum
          S17]
          Length = 260

 Score = 34.6 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 2  SDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDF 37
          +++ PF+ + N +RI+ D+ G  WF+ KDV   L +
Sbjct: 4  NNLQPFDFKGNQVRILTDKKGEPWFVAKDVCNVLGY 39


>gi|190573874|ref|YP_001971719.1| putative phage-like protein [Stenotrophomonas maltophilia K279a]
 gi|190011796|emb|CAQ45416.1| putative phage-related protein [Stenotrophomonas maltophilia
          K279a]
          Length = 253

 Score = 34.6 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 20/36 (55%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLD 36
          MS +IPF  E + +RI VD  G  WF   DV   L+
Sbjct: 1  MSAIIPFQFEAHAVRIQVDGAGLPWFNASDVCNALE 36


>gi|269955332|ref|YP_003325121.1| prophage antirepressor [Xylanimonas cellulosilytica DSM 15894]
 gi|269304013|gb|ACZ29563.1| prophage antirepressor [Xylanimonas cellulosilytica DSM 15894]
          Length = 259

 Score = 34.2 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 2  SDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDFTSI 40
          +D+  F+     +RI+ DE G+ WF+  DVA  L   +I
Sbjct: 3  TDLQQFDFHGAGVRIITDEHGDPWFVAADVAAALSLGNI 41


>gi|307544693|ref|YP_003897172.1| prophage antirepressor [Halomonas elongata DSM 2581]
 gi|307216717|emb|CBV41987.1| prophage antirepressor [Halomonas elongata DSM 2581]
          Length = 262

 Score = 33.4 bits (75), Expect = 9.5,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 1  MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDF 37
          M  + PFN +   +R++  +DG   F+ KDVA  L +
Sbjct: 1  MQSIQPFNFDSQQVRVIQGDDGEPMFVAKDVAAALGY 37


>gi|294789953|ref|ZP_06755172.1| toxin-antitoxin system, toxin component, Bro family [Simonsiella
          muelleri ATCC 29453]
 gi|294482110|gb|EFG29818.1| toxin-antitoxin system, toxin component, Bro family [Simonsiella
          muelleri ATCC 29453]
          Length = 283

 Score = 33.4 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 10 EHNPIRIVVDEDGNYWFMVKDVAGGLDFTS 39
          E++ IR + DE G +WF+  DV G L + +
Sbjct: 23 ENHSIRTIADEKGEFWFLANDVCGVLGYVN 52


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.324    0.143    0.449 

Lambda     K      H
   0.267   0.0464    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 549,210,661
Number of Sequences: 14124377
Number of extensions: 16084020
Number of successful extensions: 37152
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 37087
Number of HSP's gapped (non-prelim): 68
length of query: 41
length of database: 4,842,793,630
effective HSP length: 15
effective length of query: 26
effective length of database: 4,630,927,975
effective search space: 120404127350
effective search space used: 120404127350
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.7 bits)