RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780555|ref|YP_003064968.1| hypothetical protein CLIBASIA_02210 [Candidatus Liberibacter asiaticus str. psy62] (41 letters) >3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A {Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A* Length = 468 Score = 24.3 bits (52), Expect = 6.7 Identities = 5/13 (38%), Positives = 6/13 (46%) Query: 16 IVVDEDGNYWFMV 28 V EDG +V Sbjct: 264 FTVSEDGKSDILV 276 >2b1y_A Hypothetical protein ATU1913; NEW fold, structural genomics, , PSI, protein structure initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: b.156.1.1 Length = 104 Score = 24.1 bits (52), Expect = 7.4 Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%) Query: 12 NPIRIVVDEDGNYWFMVKDVAGG 34 +PIRI V E + W ++ D G Sbjct: 59 SPIRIAVPETMH-WHLIIDAEGH 80 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.324 0.143 0.449 Gapped Lambda K H 0.267 0.0587 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 406,360 Number of extensions: 11965 Number of successful extensions: 94 Number of sequences better than 10.0: 1 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 6 Length of query: 41 Length of database: 5,693,230 Length adjustment: 14 Effective length of query: 27 Effective length of database: 5,353,814 Effective search space: 144552978 Effective search space used: 144552978 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.4 bits)