RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780555|ref|YP_003064968.1| hypothetical protein
CLIBASIA_02210 [Candidatus Liberibacter asiaticus str. psy62]
         (41 letters)



>d2b1ya1 b.156.1.1 (A:4-104) Hypothetical protein Atu1913
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 101

 Score = 24.5 bits (53), Expect = 2.6
 Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)

Query: 12 NPIRIVVDEDGNYWFMVKDVAGG 34
          +PIRI V E  + W ++ D  G 
Sbjct: 56 SPIRIAVPETMH-WHLIIDAEGH 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.143    0.449 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 176,356
Number of extensions: 5123
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 2
Length of query: 41
Length of database: 2,407,596
Length adjustment: 14
Effective length of query: 27
Effective length of database: 2,215,376
Effective search space: 59815152
Effective search space used: 59815152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)