RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780555|ref|YP_003064968.1| hypothetical protein CLIBASIA_02210 [Candidatus Liberibacter asiaticus str. psy62] (41 letters) >d2b1ya1 b.156.1.1 (A:4-104) Hypothetical protein Atu1913 {Agrobacterium tumefaciens [TaxId: 358]} Length = 101 Score = 24.5 bits (53), Expect = 2.6 Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%) Query: 12 NPIRIVVDEDGNYWFMVKDVAGG 34 +PIRI V E + W ++ D G Sbjct: 56 SPIRIAVPETMH-WHLIIDAEGH 77 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.324 0.143 0.449 Gapped Lambda K H 0.267 0.0601 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 176,356 Number of extensions: 5123 Number of successful extensions: 32 Number of sequences better than 10.0: 1 Number of HSP's gapped: 32 Number of HSP's successfully gapped: 2 Length of query: 41 Length of database: 2,407,596 Length adjustment: 14 Effective length of query: 27 Effective length of database: 2,215,376 Effective search space: 59815152 Effective search space used: 59815152 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 47 (22.2 bits)