Query gi|254780556|ref|YP_003064969.1| hypothetical protein CLIBASIA_02215 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 120
No_of_seqs 2 out of 4
Neff 1.4
Searched_HMMs 23785
Date Tue May 31 19:21:59 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780556.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kp1_E D-ornithine aminomutase 46.3 7 0.00029 19.0 1.6 32 58-91 2-33 (121)
2 3e7k_A TRPM7 channel; coiled-c 41.2 20 0.00082 16.4 3.4 26 45-70 3-28 (56)
3 2oux_A Magnesium transporter; 33.9 21 0.00087 16.3 2.4 52 64-115 85-136 (286)
4 3kxr_A Magnesium transporter, 22.6 36 0.0015 14.9 2.0 49 68-116 6-54 (205)
5 3eps_A Isocitrate dehydrogenas 18.7 50 0.0021 14.1 2.5 61 42-109 40-100 (578)
6 2i52_A Hypothetical protein; s 16.7 29 0.0012 15.5 0.4 20 81-101 7-26 (121)
7 2iec_A Uncharacterized protein 15.7 44 0.0019 14.4 1.2 20 82-101 4-23 (131)
8 2bdd_A ACP-synthase; structura 15.3 24 0.001 15.9 -0.3 14 19-32 27-40 (182)
9 1jr5_A 10 kDa anti-sigma facto 15.0 57 0.0024 13.8 1.6 23 67-97 13-35 (90)
10 2ogf_A Hypothetical protein MJ 14.3 43 0.0018 14.5 0.8 19 82-100 12-30 (122)
No 1
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=46.34 E-value=7 Score=19.04 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCH
Q ss_conf 9999999765476771379999999993668011
Q gi|254780556|r 58 QRVKEAEEQSNARLLKGLGMDDLVRYFMNLDSQN 91 (120)
Q Consensus 58 ~RVKE~EE~s~A~llk~L~~D~L~~~F~~L~~~~ 91 (120)
+|+..-|+|+.- |..|+-++|-+|||.|-.+-
T Consensus 2 kR~DDFe~Rrkh--L~~ltdeeL~~rFW~Laeki 33 (121)
T 3kp1_E 2 KRADDFQQRRAH--LANLSDEELQTRFWEMAEKI 33 (121)
T ss_dssp ----CHHHHTGG--GTTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHH
T ss_conf 643789999999--98678999999999999998
No 2
>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, membrane protein; 2.01A {Rattus norvegicus}
Probab=41.18 E-value=20 Score=16.45 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999999999999999999765476
Q gi|254780556|r 45 AHKLAKEYVEQANQRVKEAEEQSNAR 70 (120)
Q Consensus 45 ~HkLA~E~VE~A~~RVKE~EE~s~A~ 70 (120)
..|...||||.--++++|+.|+-|.-
T Consensus 3 ~~rvTsERVE~M~~~leeVneke~~i 28 (56)
T 3e7k_A 3 GSRVTFERVEQMSIQIKEVGDRVNYI 28 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86104999999999999997899999
No 3
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, protein structure initiative, nysgxrc; 2.16A {Enterococcus faecalis V583} SCOP: a.118.26.1 d.37.1.1
Probab=33.88 E-value=21 Score=16.30 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=31.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9765476771379999999993668011466556688998988999999866
Q gi|254780556|r 64 EEQSNARLLKGLGMDDLVRYFMNLDSQNQAFFIDTIQNKYQDEMEELSEFGE 115 (120)
Q Consensus 64 EE~s~A~llk~L~~D~L~~~F~~L~~~~~~~F~~~i~~~yqdemeelsefge 115 (120)
....-+.++..|..||++..+.+|+.+-+.........+-..+.+.+-.|.+
T Consensus 85 ~~~~~~~ll~~l~~dd~~dll~~l~~~~~~~iL~~L~~~~r~~i~~ll~y~e 136 (286)
T 2oux_A 85 RPSYAADMLAEMYTDNAVDLLNMLDKSQKAKYLSLLSSEEAGEIKELLHYED 136 (286)
T ss_dssp CHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHTSCHHHHHHHHHHTTSCT
T ss_pred CHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCCC
T ss_conf 9999999998589567899998689999999997168999999999737980
No 4
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural genomics, PSI-2; 2.41A {Shewanella oneidensis mr-1}
Probab=22.55 E-value=36 Score=14.90 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=39.4
Q ss_pred HHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4767713799999999936680114665566889989889999998666
Q gi|254780556|r 68 NARLLKGLGMDDLVRYFMNLDSQNQAFFIDTIQNKYQDEMEELSEFGEK 116 (120)
Q Consensus 68 ~A~llk~L~~D~L~~~F~~L~~~~~~~F~~~i~~~yqdemeelsefgek 116 (120)
-+.++..++.||++..+=+|+++....+.+....+-....+.+-.|.+.
T Consensus 6 ~~~~l~~m~~dd~~~ll~~lp~~~~~~~l~~l~~~~r~~i~~~l~y~e~ 54 (205)
T 3kxr_A 6 VDLLFAQLSPEDLIEWSDYLPESFTDRALAQMGERQRQRFELYDQYSEN 54 (205)
T ss_dssp -CCSGGGSCHHHHHHTTTTSCHHHHHHHHHHSCHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCHH
T ss_conf 9999983897789999986999999999982999999999999579863
No 5
>3eps_A Isocitrate dehydrogenase kinase/phosphatase; ATP-binding, glyoxylate bypass, nucleotide-binding, protein phosphatase; HET: AMP ATP; 2.80A {Escherichia coli O157} PDB: 3lcb_A* 3lc6_A*
Probab=18.74 E-value=50 Score=14.09 Aligned_cols=61 Identities=11% Similarity=0.056 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99988999999999999999999765476771379999999993668011466556688998988999
Q gi|254780556|r 42 VLEAHKLAKEYVEQANQRVKEAEEQSNARLLKGLGMDDLVRYFMNLDSQNQAFFIDTIQNKYQDEMEE 109 (120)
Q Consensus 42 v~E~HkLA~E~VE~A~~RVKE~EE~s~A~llk~L~~D~L~~~F~~L~~~~~~~F~~~i~~~yqdemee 109 (120)
-.+.++.+++|.+--.++|.|+-++-... ++-..+-..|| .+-|..|++-+.+-.|.|.-|
T Consensus 40 W~~vQ~asreRI~lYD~~V~e~v~~L~~~----~~~~~~d~~~W---~~vK~~Y~~LL~~h~q~ELAE 100 (578)
T 3eps_A 40 WHAVQQAMKNRIHLYDHHVGLVVEQLRCI----TNGQSTDAEFL---LRVKEHYTRLLPDYPRFEIAE 100 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TSTTTTCHHHH---HHHHHHHHTTTTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCCCCCHHHH---HHHHHHHHHHHCCCCCHHHHH
T ss_conf 79999999999999999999999999987----27444788999---999999999971799688998
No 6
>2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.08A {Picrophilus torridus dsm 9790} SCOP: d.316.1.1
Probab=16.71 E-value=29 Score=15.46 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=16.2
Q ss_pred HHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999936680114665566889
Q gi|254780556|r 81 VRYFMNLDSQNQAFFIDTIQN 101 (120)
Q Consensus 81 ~~~F~~L~~~~~~~F~~~i~~ 101 (120)
..|| |++|..+|.|-+.|+-
T Consensus 7 ~kYF-n~TdrerA~FEaGIkl 26 (121)
T 2i52_A 7 EKYF-NCTDIQRAFFEAGIKL 26 (121)
T ss_dssp GGGC-CSCHHHHHHHHHHHHH
T ss_pred HHHC-CCCCHHHHHHHHHHHH
T ss_conf 8864-7882899888640223
No 7
>2iec_A Uncharacterized protein conserved in archaea; tetramer with intra-molecular and inter-molecular disufide bonds, structural genomics, PSI-2; 2.33A {Methanopyrus kandleri} SCOP: d.316.1.1
Probab=15.72 E-value=44 Score=14.40 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=17.0
Q ss_pred HHHHCCCCCHHHHHHHHHHH
Q ss_conf 99936680114665566889
Q gi|254780556|r 82 RYFMNLDSQNQAFFIDTIQN 101 (120)
Q Consensus 82 ~~F~~L~~~~~~~F~~~i~~ 101 (120)
.||-|++|..+|.|-+-|+-
T Consensus 4 kYF~n~TdrerA~FEaGIkl 23 (131)
T 2iec_A 4 KYFKRLSDRERAIFEAGITL 23 (131)
T ss_dssp -----CCHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHH
T ss_conf 45420882988888741233
No 8
>2bdd_A ACP-synthase; structural genomics, structural genomics consortium, SGC, transferase; 2.28A {Plasmodium yoelii yoelii}
Probab=15.27 E-value=24 Score=15.94 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=12.2
Q ss_pred HHCHHHCCCHHHHH
Q ss_conf 60002201026799
Q gi|254780556|r 19 IGCSLVEDNRIESL 32 (120)
Q Consensus 19 ~GC~lVEDNri~S~ 32 (120)
||||||+-.|++.+
T Consensus 27 IGiDIV~I~Ri~~l 40 (182)
T 2bdd_A 27 IGTDILCVNRIYKI 40 (182)
T ss_dssp EEEEEEEHHHHHHH
T ss_pred EEEEEEEHHHHHHH
T ss_conf 95660287999999
No 9
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=15.05 E-value=57 Score=13.78 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 5476771379999999993668011466556
Q gi|254780556|r 67 SNARLLKGLGMDDLVRYFMNLDSQNQAFFID 97 (120)
Q Consensus 67 s~A~llk~L~~D~L~~~F~~L~~~~~~~F~~ 97 (120)
+.||+|-|.|.||.+ +||.-|++
T Consensus 13 aiaSiLIKf~~edIl--------~~q~~FI~ 35 (90)
T 1jr5_A 13 TVASILIKFSREDIV--------ENRANFIA 35 (90)
T ss_dssp HHHHHHHHTTCHHHH--------TCHHHHHH
T ss_pred HHHHHHHHCCHHHHH--------HHHHHHHH
T ss_conf 999999982799998--------72999999
No 10
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, protein structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii}
Probab=14.28 E-value=43 Score=14.48 Aligned_cols=19 Identities=37% Similarity=0.669 Sum_probs=0.0
Q ss_pred HHHHCCCCCHHHHHHHHHH
Q ss_conf 9993668011466556688
Q gi|254780556|r 82 RYFMNLDSQNQAFFIDTIQ 100 (120)
Q Consensus 82 ~~F~~L~~~~~~~F~~~i~ 100 (120)
.||-|++|..+|.|-+.|+
T Consensus 12 kYF~n~TdrerA~FEaGIk 30 (122)
T 2ogf_A 12 KYFKNLTDRERAVFEGGIT 30 (122)
T ss_dssp HTTTTSCHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHH
T ss_conf 8744488699888864122
Done!