RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780556|ref|YP_003064969.1| hypothetical protein CLIBASIA_02215 [Candidatus Liberibacter asiaticus str. psy62] (120 letters) >d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243 Score = 28.1 bits (62), Expect = 0.26 Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Query: 11 LVTTAITIIGCSLVEDNRIESLRM----VKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQ 66 + + +G S+ + E++ + V + + + +L K YVE+AN+R++E ++ Sbjct: 185 AMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEEL-KPYVERANERIRELLKK 243 >d3ejna1 a.118.8.6 (A:32-490) Uncharacterized protein BF3025 {Bacteroides fragilis [TaxId: 817]} Length = 459 Score = 24.6 bits (52), Expect = 2.4 Identities = 9/75 (12%), Positives = 22/75 (29%), Gaps = 15/75 (20%) Query: 53 VEQANQRVKEAEEQSN------ARLLKGLGMDDLVRYF---------MNLDSQNQAFFID 97 + + +EAE + + + +L F + D Sbjct: 54 LRNVQKMGEEAERVNAPVYTALTKFFRAYYFYELTLRFGDIPYSQALKGEKEEIYTPEYD 113 Query: 98 TIQNKYQDEMEELSE 112 ++ + ++EL E Sbjct: 114 AQEDVFAGILQELRE 128 >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 Score = 24.5 bits (52), Expect = 2.5 Identities = 7/34 (20%), Positives = 15/34 (44%) Query: 19 IGCSLVEDNRIESLRMVKEAKMEVLEAHKLAKEY 52 +G +D + L +V++ + + L EY Sbjct: 37 VGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEY 70 >d1vr0a1 c.148.1.1 (A:1-235) 2-phosphosulfolactate phosphatase ComB {Clostridium acetobutylicum [TaxId: 1488]} Length = 235 Score = 24.1 bits (52), Expect = 3.8 Identities = 10/63 (15%), Positives = 22/63 (34%) Query: 29 IESLRMVKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQSNARLLKGLGMDDLVRYFMNLD 88 I + M + K+E+ +A A+ + + + + + LG+ Y D Sbjct: 162 IINCVMDRMKKLELTDAATTAQYVYKTNEDIKGFVKYAKHYKRIMELGLKKDFEYCCKKD 221 Query: 89 SQN 91 Sbjct: 222 IVK 224 >d1jxha_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Salmonella typhimurium [TaxId: 90371]} Length = 266 Score = 23.6 bits (50), Expect = 4.5 Identities = 4/17 (23%), Positives = 6/17 (35%) Query: 40 MEVLEAHKLAKEYVEQA 56 E AK ++ A Sbjct: 227 RSWGETVNEAKAWLSAA 243 >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 Score = 23.4 bits (49), Expect = 5.9 Identities = 8/34 (23%), Positives = 13/34 (38%) Query: 19 IGCSLVEDNRIESLRMVKEAKMEVLEAHKLAKEY 52 IG ++ + L VK A+ + EY Sbjct: 36 IGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEY 69 >d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 286 Score = 23.2 bits (49), Expect = 6.5 Identities = 8/39 (20%), Positives = 17/39 (43%) Query: 34 MVKEAKMEVLEAHKLAKEYVEQANQRVKEAEEQSNARLL 72 + A+ + A +A +Y+E + + + RLL Sbjct: 229 ALDAARAVLDAAPGVAVDYLELRDIGLGPMPLNGSGRLL 267 >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 142 Score = 23.3 bits (50), Expect = 6.7 Identities = 5/40 (12%), Positives = 17/40 (42%), Gaps = 2/40 (5%) Query: 10 TLVTTAITIIGCSLVEDNRIESL--RMVKEAKMEVLEAHK 47 ++ + +ED I+ + ++ ++ +EA+ Sbjct: 9 RIINDDQSFYADVYLEDGLIKQIGENLIVPGGVKTIEANG 48 >d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 304 Score = 22.9 bits (48), Expect = 7.4 Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%) Query: 83 YFMNLDSQNQAFFIDTIQNKYQDEMEELSEFGEKV 117 + +A + + + DE EL+ FG +V Sbjct: 235 LTCDPTIYKRATPVPYLT--F-DEAAELAYFGAQV 266 >d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Length = 88 Score = 23.1 bits (50), Expect = 7.5 Identities = 8/43 (18%), Positives = 23/43 (53%) Query: 22 SLVEDNRIESLRMVKEAKMEVLEAHKLAKEYVEQANQRVKEAE 64 + E++ +LR ++ A M+ ++A+++VE+ + + Sbjct: 21 RITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQ 63 >d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 292 Score = 22.9 bits (48), Expect = 8.1 Identities = 6/13 (46%), Positives = 8/13 (61%) Query: 105 DEMEELSEFGEKV 117 E E++ FG KV Sbjct: 244 AEAAEMATFGAKV 256 >d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]} Length = 447 Score = 22.6 bits (48), Expect = 8.9 Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 2/39 (5%) Query: 48 LAKEYVEQANQRVKEAEEQSNAR--LLKGLGMDDLVRYF 84 L + + E A + + + + R L+ + ++ F Sbjct: 352 LDRSFPEDAKRLRAQVAHELDVRFKELEHMAATNIFESF 390 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.314 0.129 0.334 Gapped Lambda K H 0.267 0.0422 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 381,019 Number of extensions: 15042 Number of successful extensions: 83 Number of sequences better than 10.0: 1 Number of HSP's gapped: 82 Number of HSP's successfully gapped: 27 Length of query: 120 Length of database: 2,407,596 Length adjustment: 74 Effective length of query: 46 Effective length of database: 1,391,576 Effective search space: 64012496 Effective search space used: 64012496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 47 (22.7 bits)