HHsearch alignment for GI: 254780557 and conserved domain: PRK03759
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional.
Probab=99.68 E-value=4.6e-16 Score=113.95 Aligned_cols=119 Identities=23% Similarity=0.259 Sum_probs=79.4
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCC
Q ss_conf 56606999984898399999268877666872201-21150788888899999999983755222220136612411632
Q gi|254780557|r 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQM-PQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPA 80 (160)
Q Consensus 2 yR~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~-PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~ 80 (160)
T Consensus 33 lHRafsv~l~~~~g~lllq~Rs~~K-~~~pg~w~~s~~gH~~~gE~~~~aa~R~l~EElGi~~~~l~~~-~~~f~Y~a~~ 110 (184)
T PRK03759 33 LHLAFSCYLFDADGRLLVTRRALSK-KTWPGVWTNSCCGHPQPGESLEDAIIRRCREELGVEITDLTLV-LPDFRYRATD 110 (184)
T ss_pred EEEEEEEEEECCCCCEEEEECCCCC-CCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEE-EEEEEEECCC
T ss_conf 3889999999599969999715897-3799940035446789998999999999999869883444055-0038997238
Q ss_pred CCCCCCCCCCCC-CEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCC
Q ss_conf 220000112344-3379999804754301057888888860037603789976300
Q gi|254780557|r 81 HCIQENGYVGQM-QKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIV 135 (160)
Q Consensus 81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i 135 (160)
T Consensus 111 ~----~g~~E~E~~~Vf~~~~d~---~~------~pnp~EV~e~~Wv~~~eL~~~i 153 (184)
T PRK03759 111 P----NGIVENEVCPVFAARATS---AL------QPNPDEVMDYQWVDPADLLRAV 153 (184)
T ss_pred C----CCCCEEEEEEEEEEEECC---CC------CCCHHHHEEEEEECHHHHHHHH
T ss_conf 9----986225799999998489---89------8996891346898699999999