HHsearch alignment for GI: 254780557 and conserved domain: TIGR02150
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1; InterPro: IPR011876 This entry represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0008299 isoprenoid biosynthetic process.
Probab=98.28 E-value=9.4e-06 Score=53.90 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=71.9
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCCCCCCC-CCCCCCCC---CC-----------CHHHHHHHHHHHHHCCCCCCCC-CC
Q ss_conf 699998489839999926887766687220-12115078---88-----------8889999999998375522222-01
Q gi|254780557|r 6 VGILILNQDDLVWVGRRCFHDNNKHLSLWQ-MPQGGINP---QE-----------DPLDAAYRELYEETGIKSISLL-GQ 69 (160)
Q Consensus 6 V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~-~PgG~ve~---gE-----------t~~~Aa~REl~EEtGi~~~~~~-~~ 69 (160)
T Consensus 33 FS~flfn~~~~LL~qrRa~~K-~twP~vWTNsCCsHP~~q~~G~l~q~~~~~~~~Gvk~~A~RRl~~~LGi~~~~~~~~~ 111 (190)
T TIGR02150 33 FSVFLFNDQGRLLLQRRAASK-ITWPGVWTNSCCSHPLPQTPGTLAQSTLEENVLGVKNAAIRRLLAELGIPADDVDVDE 111 (190)
T ss_pred EEEEEECCCCCEEEEEECCCC-CCCCCCEECCEECCCCCCCCCCCHHCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 676777189836888840118-8437840034027878888885101146111103326788878763488512236757
Q ss_pred CCC--CEEECCCCCCCCCCCCCCCCCEEEEEEECC--CCCCEECCCCCCCCCCCCCEEEECCHHHHHHC
Q ss_conf 366--124116322200001123443379999804--75430105788888886003760378997630
Q gi|254780557|r 70 GDS--YIQYDFPAHCIQENGYVGQMQKWFAFRFQG--LTSEICVDRTAYGYESEFDAWTWVSLWDTPNI 134 (160)
Q Consensus 70 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~ 134 (160)
T Consensus 112 ~~~L~~~~Y~A~~~---s~g~~G~h~~~~~~~~~~nk~~~~~~PnP------~~v~~~~W~~~~~~~~~ 171 (190)
T TIGR02150 112 LTVLPRFSYRARDG---SDGAWGIHEVCPVFFARKNKADVPVNPNP------PEVAAIKWVSLEVLREV 171 (190)
T ss_pred HHHCCCCEEEECCC---CCCCCCEEEEEEEEEEECCCCCCCCCCCC------CHHHEEEECCHHHHHHH
T ss_conf 20034733661443---45778758511589997234588876897------22421440268999998