HHsearch alignment for GI: 254780557 and conserved domain: cd03674
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.88 E-value=4.8e-22 Score=148.79 Aligned_cols=120 Identities=24% Similarity=0.242 Sum_probs=73.1
Q ss_pred EEEEEEEC-CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC--CEEECCCCC
Q ss_conf 06999984-898399999268877666872201211507888888999999999837552222201366--124116322
Q gi|254780557|r 5 GVGILILN-QDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDS--YIQYDFPAH 81 (160)
Q Consensus 5 ~V~vvi~n-~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~--~~~~~~~~~ 81 (160)
T Consensus 4 ~~~~~Vv~~~~g~vLLv~~~~------~g~W~lPGG~ve~gEt~~~Aa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 77 (138)
T cd03674 4 TASAFVVNPDRGKVLLTHHRK------LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGH 77 (138)
T ss_pred EEEEEEEECCCCEEEEEEECC------CCEEECCCCEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEECCC
T ss_conf 799999978999899998659------99298996586798899999999999987987322256043405789876685
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHH
Q ss_conf 20000112344337999980475430105788888886003760378997630000
Q gi|254780557|r 82 CIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVD 137 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~ 137 (160)
T Consensus 78 ~~~~~~~~~h~~v~f~~~~~~~--~-----~~~~~~~E~~~~~W~~~~el~~l~~~ 126 (138)
T cd03674 78 PKRGVPGHLHLDLRFLAVAPAD--D-----VAPPKSDESDAVRWFPLDELASLELP 126 (138)
T ss_pred CCCCCCCEEEEEEEEEEEECCC--C-----CCCCCCCCCCEEEEEEHHHCCCCCCC
T ss_conf 6788887699999999996288--8-----66689973210299859993025899