HHsearch alignment for GI: 254780557 and conserved domain: cd03676

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.23  E-value=1.9e-10  Score=81.29  Aligned_cols=123  Identities=15%  Similarity=0.278  Sum_probs=75.3

Q ss_pred             EEECCCC--CEEEEEECCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-CCCCCCEEECCCCCCCC
Q ss_conf             9984898--39999926887766687220-12115078888889999999998375522222-01366124116322200
Q gi|254780557|r    9 LILNQDD--LVWVGRRCFHDNNKHLSLWQ-MPQGGINPQEDPLDAAYRELYEETGIKSISLL-GQGDSYIQYDFPAHCIQ   84 (160)
Q Consensus         9 vi~n~~~--~iLl~kR~~~~~~~~~g~W~-~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~-~~~~~~~~~~~~~~~~~   84 (160)
T Consensus        40 ~v~~~~~~~~lWv~rRs~~K-~~~Pg~~D~~vaGg~~~g~~~~~~~~rE~~EEagi~~~l~~~~~~~G~isy~~~~---~  115 (180)
T cd03676          40 YVRDEDGGLRIWIPRRSPTK-ATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREG---E  115 (180)
T ss_pred             EEECCCCCEEEEEECCCCCC-CCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCEECEEEEEEEEC---C
T ss_conf             99879997899986268987-7899753011113667998999999999998819998998315511179999876---8


Q ss_pred             CCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCH--HCCHHH
Q ss_conf             0011234433799998047543010578888888600376037899763000--013799
Q gi|254780557|r   85 ENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVV--DFKKEA  142 (160)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~--~fk~~v  142 (160)
T Consensus       116 ~~gl~~e~~~vYdl~lp~-------d~~P~~~DGEVe~F~l~~v~ev~~~l~~g~Fkpn~  168 (180)
T cd03676         116 AGGLQPEVEYVYDLELPP-------DFIPAPQDGEVESFRLLTIDEVLRALKEGEFKPNC  168 (180)
T ss_pred             CCCCCCCEEEEEEEEECC-------CCEECCCCCCEEEEEEECHHHHHHHHHCCCCCCCC
T ss_conf             777355389999998289-------96057999866369996599999999739976520