HHsearch alignment for GI: 254780557 and conserved domain: cd04661
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=98.61 E-value=4.7e-07 Score=61.50 Aligned_cols=109 Identities=19% Similarity=0.280 Sum_probs=65.2
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC-C-CCCEEECCCCCCCCCCCCCCCC
Q ss_conf 8399999268877666872201211507888888999999999837552222201-3-6612411632220000112344
Q gi|254780557|r 15 DLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQ-G-DSYIQYDFPAHCIQENGYVGQM 92 (160)
Q Consensus 15 ~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 92 (160)
T Consensus 13 tLyLlVk~k~g----~~~~W~fP~~~~~~~EtLr~~Aer~L~~~~G~~~~~~~vgnaP~g~~k~k~p~~~~-~~~~~G~K 87 (132)
T cd04661 13 TLVLLVQQKVG----SQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVR-NEGIVGAK 87 (132)
T ss_pred EEEEEEEECCC----CCCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEECCCCCC-CCCCCCEE
T ss_conf 39999995379----88880288424667854899999999986077736789626875889875685224-44666347
Q ss_pred CEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHH
Q ss_conf 337999980475430105788888886003760378997630000
Q gi|254780557|r 93 QKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVD 137 (160)
Q Consensus 93 ~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~ 137 (160)
T Consensus 88 ~Ff~ka~~~~G~~~--~~-------~~~~df~Wltk~EL~~~l~~ 123 (132)
T cd04661 88 VFFFKARYMSGQFE--LS-------QNQVDFKWLAKEELQKYLNP 123 (132)
T ss_pred EEEEEEEEECCCCC--CC-------CCCCEEEECCHHHHHHHCCH
T ss_conf 99999999558646--56-------77520387089999876599