HHsearch alignment for GI: 254780557 and conserved domain: cd04667
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=5.8e-21 Score=142.50 Aligned_cols=102 Identities=28% Similarity=0.364 Sum_probs=70.2
Q ss_pred EEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 99998489839999926887766687220121150788888899999999983755222220136612411632220000
Q gi|254780557|r 7 GILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCIQEN 86 (160)
Q Consensus 7 ~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (160)
T Consensus 3 A~vi~~~~g~vLLvrr~-------~g~W~lPGG~ve~GEt~~~Aa~RE~~EEtGl~~~~~~~~~----~~~~-------- 63 (112)
T cd04667 3 ATVICRRGGRVLLVRKS-------GSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLF----HVDG-------- 63 (112)
T ss_pred EEEEEECCCEEEEEEEC-------CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEE----EEEC--------
T ss_conf 89999709999999918-------9938898748889989999999999998693765469999----9908--------
Q ss_pred CCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHH
Q ss_conf 112344337999980475430105788888886003760378997630000
Q gi|254780557|r 87 GYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVD 137 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~ 137 (160)
T Consensus 64 --~~~~~~~f~~~~~~--------~~~~~~~~E~~e~rW~~~del~el~~~ 104 (112)
T cd04667 64 --GSTRHHVFVASVPP--------SAQPKPSNEIADCRWLSLDALGDLNAS 104 (112)
T ss_pred --CCEEEEEEEEEECC--------CCCCCCCCCCEEEEEEEHHHCCCCCCC
T ss_conf --98899999999758--------864189974214799869996368899