HHsearch alignment for GI: 254780557 and conserved domain: cd04676
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.90 E-value=2e-23 Score=156.86 Aligned_cols=115 Identities=25% Similarity=0.328 Sum_probs=77.6
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCC--C
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220136612411632--2
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPA--H 81 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~--~ 81 (160)
T Consensus 3 ~gv~~vv~~~~g~vLL~~r~~------~g~W~lPGG~ve~GE~~~~aa~RE~~EEtGl~v~~~~~~~----~~~~~~~~~ 72 (129)
T cd04676 3 PGVTAVVRDDEGRVLLIRRSD------NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVG----IYTGPVHVV 72 (129)
T ss_pred CEEEEEEEECCCEEEEEEECC------CCEEECCCCEECCCCCHHHHHHHHHHHHHCCEEEEEEEEE----EECCCCCCE
T ss_conf 779999997998099999869------9969899257419989899888999997695778727999----972644216
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCH
Q ss_conf 2000011234433799998047543010578888888600376037899763000
Q gi|254780557|r 82 CIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVV 136 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~ 136 (160)
T Consensus 73 ~~~~~~~~~~~~~~f~~~~~~~~--------~~~~~~E~~e~~Wf~~delp~l~~ 119 (129)
T cd04676 73 TYPNGDVRQYLDITFRCRVVGGE--------LRVGDDESLDVAWFDPDGLPPLLM 119 (129)
T ss_pred ECCCCCEEEEEEEEEEEEEECCC--------CCCCCCCEEEEEEECHHHCCCCCC
T ss_conf 27999869999999998872884--------559997178889989989969999