HHsearch alignment for GI: 254780557 and conserved domain: cd04692
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=4.6e-19 Score=131.41 Aligned_cols=123 Identities=17% Similarity=0.259 Sum_probs=84.1
Q ss_pred CCCEEEEEEECCC---CCEEEEEECCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEC
Q ss_conf 5660699998489---83999992688776668722012-1150788888899999999983755222220136612411
Q gi|254780557|r 2 YRRGVGILILNQD---DLVWVGRRCFHDNNKHLSLWQMP-QGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYD 77 (160)
Q Consensus 2 yR~~V~vvi~n~~---~~iLl~kR~~~~~~~~~g~W~~P-gG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~ 77 (160)
T Consensus 1 ~Hra~h~~v~~~~~~~g~illqkRs~~K-~~~Pg~wd~s~~Ghv~~gEt~~~aa~REl~EElGl~~~~~~l~~lg~~~~~ 79 (144)
T cd04692 1 WHRTFHCWIITKDEGKGYVLLQKRSANK-KTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIE 79 (144)
T ss_pred CCEEEEEEEEECCCCCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHCEEEEEEEEE
T ss_conf 9338999999667995289999788998-789983116657504579998999998999986887676881882189999
Q ss_pred CCCCCCCCCCCCCCC-CEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCC
Q ss_conf 632220000112344-3379999804754301057888888860037603789976300
Q gi|254780557|r 78 FPAHCIQENGYVGQM-QKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIV 135 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i 135 (160)
T Consensus 80 ~~----~~~~~~d~e~~~vy~~~~~~~~~~~------~~~~~EV~~~~wv~~~el~~~~ 128 (144)
T cd04692 80 YD----HIGKLIDREFHHVYLYELKVPLEEF------TLQKEEVAGVVLIPLDEFAELL 128 (144)
T ss_pred EE----CCCCCEEEEEEEEEEEEECCCCCCC------CCCHHHHHEEEEECHHHHHHHH
T ss_conf 74----4998172089999999968984567------8997881059998799999998