Query gi|254780557|ref|YP_003064970.1| dinucleoside polyphosphate hydrolase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 160
No_of_seqs 112 out of 4114
Neff 8.5
Searched_HMMs 39220
Date Sun May 29 22:29:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780557.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00714 dinucleoside polyphos 100.0 1.3E-42 0 268.6 14.7 146 1-155 6-156 (156)
2 cd03671 Ap4A_hydrolase_plant_l 100.0 4.3E-40 1.1E-44 253.9 13.1 142 1-150 1-147 (147)
3 cd04670 Nudix_Hydrolase_12 Mem 99.9 8.2E-27 2.1E-31 176.5 11.4 124 3-148 2-125 (127)
4 cd04695 Nudix_Hydrolase_36 Mem 99.9 3E-25 7.7E-30 167.4 11.4 126 6-150 2-131 (131)
5 cd04681 Nudix_Hydrolase_22 Mem 99.9 5.6E-25 1.4E-29 165.9 12.0 114 4-134 2-115 (130)
6 cd04677 Nudix_Hydrolase_18 Mem 99.9 1.7E-25 4.3E-30 168.9 8.9 124 2-143 6-131 (132)
7 cd04679 Nudix_Hydrolase_20 Mem 99.9 3.9E-25 9.9E-30 166.8 9.7 122 3-142 2-123 (125)
8 cd04678 Nudix_Hydrolase_19 Mem 99.9 7.2E-25 1.8E-29 165.2 9.8 117 3-135 2-118 (129)
9 cd04699 Nudix_Hydrolase_39 Mem 99.9 1.5E-24 3.8E-29 163.4 11.2 116 4-137 2-117 (129)
10 cd03430 GDPMH GDP-mannose glyc 99.9 2.5E-24 6.5E-29 162.0 11.0 120 4-134 13-132 (144)
11 cd04683 Nudix_Hydrolase_24 Mem 99.9 1E-24 2.6E-29 164.3 8.8 119 5-140 2-120 (120)
12 cd04696 Nudix_Hydrolase_37 Mem 99.9 9.9E-24 2.5E-28 158.6 11.8 115 4-137 3-117 (125)
13 PRK09438 ntpA dATP pyrophospho 99.9 4.8E-23 1.2E-27 154.6 11.8 127 2-142 5-139 (148)
14 cd04676 Nudix_Hydrolase_17 Mem 99.9 2E-23 5E-28 156.9 9.5 115 4-136 3-119 (129)
15 cd04700 DR1025_like DR1025 fro 99.9 5.4E-23 1.4E-27 154.3 10.8 114 4-136 14-127 (142)
16 cd04682 Nudix_Hydrolase_23 Mem 99.9 8.5E-23 2.2E-27 153.2 11.1 113 4-133 1-113 (122)
17 cd03425 MutT_pyrophosphohydrol 99.9 5E-23 1.3E-27 154.5 9.6 114 6-141 4-118 (124)
18 PRK10776 nucleoside triphospha 99.9 4.4E-23 1.1E-27 154.8 9.3 115 1-137 1-116 (129)
19 cd04694 Nudix_Hydrolase_35 Mem 99.9 1.1E-22 2.8E-27 152.5 11.1 128 4-134 2-131 (143)
20 cd04680 Nudix_Hydrolase_21 Mem 99.9 1.5E-22 3.7E-27 151.8 10.8 112 4-138 1-112 (120)
21 cd04684 Nudix_Hydrolase_25 Con 99.9 2.1E-22 5.3E-27 150.9 11.1 118 4-135 1-118 (128)
22 cd03673 Ap6A_hydrolase Diadeno 99.9 2.5E-22 6.3E-27 150.5 11.5 125 4-147 2-130 (131)
23 cd04672 Nudix_Hydrolase_14 Mem 99.9 1.5E-22 3.9E-27 151.6 10.0 114 3-137 2-115 (123)
24 cd04671 Nudix_Hydrolase_13 Mem 99.9 1.6E-22 4.1E-27 151.5 9.8 109 5-134 2-110 (123)
25 cd03674 Nudix_Hydrolase_1 Memb 99.9 4.8E-22 1.2E-26 148.8 11.3 120 5-137 4-126 (138)
26 PRK10546 pyrimidine (deoxy)nuc 99.9 3.7E-22 9.4E-27 149.5 10.6 123 5-149 5-128 (135)
27 cd04673 Nudix_Hydrolase_15 Mem 99.9 2.8E-22 7.3E-27 150.1 9.6 116 4-136 1-116 (122)
28 cd04664 Nudix_Hydrolase_7 Memb 99.9 8.2E-22 2.1E-26 147.4 11.3 124 5-147 3-128 (129)
29 cd04687 Nudix_Hydrolase_28 Mem 99.9 9.5E-22 2.4E-26 147.1 10.9 121 3-134 1-121 (128)
30 pfam00293 NUDIX NUDIX domain. 99.9 1.7E-21 4.5E-26 145.5 11.9 121 2-138 1-121 (133)
31 cd03428 Ap4A_hydrolase_human_l 99.9 2.8E-21 7.2E-26 144.3 11.9 123 3-146 2-128 (130)
32 cd04511 Nudix_Hydrolase_4 Memb 99.9 1.1E-21 2.9E-26 146.6 9.5 110 4-138 14-125 (130)
33 cd04691 Nudix_Hydrolase_32 Mem 99.9 9.9E-22 2.5E-26 147.0 9.1 104 6-133 3-107 (117)
34 PRK08999 hypothetical protein; 99.9 2.4E-21 6.2E-26 144.7 10.6 121 3-145 4-126 (312)
35 cd04690 Nudix_Hydrolase_31 Mem 99.9 3.7E-21 9.4E-26 143.6 9.7 108 6-134 3-110 (118)
36 cd02883 Nudix_Hydrolase Nudix 99.8 7.3E-21 1.9E-25 141.9 10.3 112 4-134 1-112 (123)
37 cd04667 Nudix_Hydrolase_10 Mem 99.8 5.8E-21 1.5E-25 142.5 9.5 102 7-137 3-104 (112)
38 cd03427 MTH1 MutT homolog-1 (M 99.8 9.3E-21 2.4E-25 141.3 10.0 121 7-147 4-125 (137)
39 cd04669 Nudix_Hydrolase_11 Mem 99.8 1E-20 2.6E-25 141.0 10.1 112 5-134 2-114 (121)
40 cd04688 Nudix_Hydrolase_29 Mem 99.8 1.4E-20 3.5E-25 140.3 8.5 118 3-134 1-118 (126)
41 cd03675 Nudix_Hydrolase_2 Cont 99.8 8.3E-20 2.1E-24 135.8 12.1 129 5-156 2-130 (134)
42 cd04697 Nudix_Hydrolase_38 Mem 99.8 5.2E-20 1.3E-24 136.9 11.0 112 4-135 1-113 (126)
43 cd04685 Nudix_Hydrolase_26 Mem 99.8 1E-19 2.6E-24 135.2 10.3 123 4-134 1-123 (133)
44 cd04693 Nudix_Hydrolase_34 Mem 99.8 1.3E-19 3.4E-24 134.5 10.0 112 5-135 2-114 (127)
45 cd04692 Nudix_Hydrolase_33 Mem 99.8 4.6E-19 1.2E-23 131.4 10.3 123 2-135 1-128 (144)
46 cd04689 Nudix_Hydrolase_30 Mem 99.8 7.9E-19 2E-23 130.0 10.8 120 4-150 2-121 (125)
47 cd03672 Dcp2p mRNA decapping e 99.8 9.6E-19 2.5E-23 129.6 9.5 109 4-134 2-111 (145)
48 cd02885 IPP_Isomerase Isopente 99.8 3.9E-18 9.9E-23 126.0 10.7 120 1-135 28-149 (165)
49 COG1051 ADP-ribose pyrophospha 99.8 5.5E-18 1.4E-22 125.2 10.8 114 4-137 11-125 (145)
50 cd03429 NADH_pyrophosphatase N 99.8 1.2E-18 3.1E-23 129.0 5.8 123 4-150 1-128 (131)
51 PRK05379 bifunctional nicotina 99.7 4.3E-17 1.1E-21 119.9 9.4 116 5-134 204-321 (340)
52 cd04686 Nudix_Hydrolase_27 Mem 99.7 6.1E-17 1.5E-21 119.1 9.9 114 5-133 2-118 (131)
53 TIGR00586 mutt mutator mutT pr 99.7 8.5E-18 2.2E-22 124.0 4.2 71 8-82 10-80 (150)
54 PRK03759 isopentenyl-diphospha 99.7 4.6E-16 1.2E-20 113.9 11.0 119 2-135 33-153 (184)
55 cd04674 Nudix_Hydrolase_16 Mem 99.6 9.4E-16 2.4E-20 112.2 9.3 107 4-130 5-111 (118)
56 cd03424 ADPRase_NUDT5 ADP-ribo 99.6 4.8E-15 1.2E-19 108.0 11.6 118 4-139 3-120 (137)
57 cd03426 CoAse Coenzyme A pyrop 99.6 3.3E-15 8.3E-20 109.0 9.0 113 4-134 3-118 (157)
58 PRK11762 nudE ADP-ribose dipho 99.6 3.1E-14 8E-19 103.3 10.3 114 5-137 49-162 (185)
59 COG0494 MutT NTP pyrophosphohy 99.5 4.5E-13 1.1E-17 96.6 12.6 113 15-137 24-137 (161)
60 cd04666 Nudix_Hydrolase_9 Memb 99.5 1.6E-13 4.2E-18 99.1 9.6 111 6-135 3-116 (122)
61 PRK10729 nudF ADP-ribose pyrop 99.5 5.4E-13 1.4E-17 96.1 11.1 121 5-138 51-175 (202)
62 PRK10707 hypothetical protein; 99.5 3.5E-13 8.9E-18 97.2 9.7 105 12-134 41-146 (190)
63 cd04665 Nudix_Hydrolase_8 Memb 99.5 8.2E-14 2.1E-18 100.9 5.4 54 8-68 4-57 (118)
64 PRK00241 nudC NADH pyrophospha 99.5 3.1E-13 7.9E-18 97.5 8.0 119 4-150 134-253 (257)
65 KOG2839 consensus 99.4 7.4E-13 1.9E-17 95.3 9.5 132 2-154 8-142 (145)
66 KOG0648 consensus 99.4 4E-13 1E-17 96.8 5.8 124 3-141 115-238 (295)
67 cd04662 Nudix_Hydrolase_5 Memb 99.4 1.5E-12 3.8E-17 93.5 8.6 109 5-128 2-126 (126)
68 COG2816 NPY1 NTP pyrophosphohy 99.4 3.2E-13 8.3E-18 97.4 5.1 105 4-134 145-250 (279)
69 cd04663 Nudix_Hydrolase_6 Memb 99.4 6.8E-13 1.7E-17 95.5 5.7 50 7-63 4-55 (126)
70 KOG3084 consensus 99.3 4.5E-13 1.1E-17 96.6 3.3 109 4-133 188-297 (345)
71 TIGR02705 nudix_YtkD nucleosid 99.3 1.3E-12 3.4E-17 93.8 2.3 52 9-67 30-81 (158)
72 cd03676 Nudix_hydrolase_3 Memb 99.2 1.9E-10 4.8E-15 81.3 11.5 123 9-142 40-168 (180)
73 COG1443 Idi Isopentenyldiphosp 99.1 3.8E-10 9.6E-15 79.5 8.0 116 7-136 37-155 (185)
74 KOG3041 consensus 99.1 3E-09 7.6E-14 74.3 11.1 120 4-136 74-196 (225)
75 KOG3069 consensus 99.1 1.1E-09 2.9E-14 76.7 8.7 115 5-134 45-163 (246)
76 COG4119 Predicted NTP pyrophos 98.9 2.4E-09 6.1E-14 74.8 6.6 106 31-148 35-149 (161)
77 cd03431 DNA_Glycosylase_C DNA 98.8 5.6E-08 1.4E-12 66.9 9.3 115 3-148 2-116 (118)
78 cd04661 MRP_L46 Mitochondrial 98.6 4.7E-07 1.2E-11 61.5 9.7 109 15-137 13-123 (132)
79 cd03670 ADPRase_NUDT9 ADP-ribo 98.5 2.3E-07 5.8E-12 63.3 6.2 41 16-62 50-90 (186)
80 KOG0142 consensus 98.4 3E-07 7.6E-12 62.7 5.1 120 4-136 53-185 (225)
81 TIGR02150 IPP_isom_1 isopenten 98.3 9.4E-06 2.4E-10 53.9 9.6 119 6-134 33-171 (190)
82 KOG2937 consensus 98.1 5.2E-07 1.3E-11 61.2 0.4 107 4-132 83-190 (348)
83 KOG4195 consensus 97.9 8.9E-06 2.3E-10 54.0 3.7 39 16-60 140-178 (275)
84 PRK10880 adenine DNA glycosyla 97.8 0.0001 2.6E-09 47.9 7.8 113 6-151 233-345 (350)
85 TIGR00052 TIGR00052 conserved 97.4 0.00066 1.7E-08 43.2 7.3 131 5-146 46-191 (199)
86 KOG4313 consensus 97.3 0.0013 3.3E-08 41.5 7.6 108 16-134 149-258 (306)
87 KOG4548 consensus 97.3 0.0019 4.8E-08 40.5 7.9 106 14-140 138-253 (263)
88 PRK13910 DNA glycosylase MutY; 96.7 0.0046 1.2E-07 38.2 6.0 28 122-152 257-284 (290)
89 COG4112 Predicted phosphoester 96.7 0.013 3.3E-07 35.6 8.1 111 8-133 66-186 (203)
90 KOG1689 consensus 94.9 0.12 3.2E-06 29.9 6.6 52 3-61 69-123 (221)
91 COG1194 MutY A/G-specific DNA 91.2 0.53 1.4E-05 26.2 5.2 39 3-43 235-273 (342)
92 TIGR01084 mutY A/G-specific ad 88.2 0.6 1.5E-05 25.9 3.5 40 3-44 241-280 (297)
93 KOG4432 consensus 75.1 7 0.00018 19.7 6.3 30 36-65 83-112 (405)
94 KOG2937 consensus 73.6 0.8 2E-05 25.2 -0.3 34 31-64 263-296 (348)
95 TIGR00586 mutt mutator mutT pr 70.5 0.2 5E-06 28.7 -4.0 54 9-64 87-140 (150)
96 KOG1202 consensus 58.0 10 0.00027 18.7 2.9 39 22-67 259-297 (2376)
97 PRK07198 hypothetical protein; 52.5 20 0.0005 17.1 3.9 49 6-61 153-201 (418)
98 PRK04123 ribulokinase; Provisi 48.2 23 0.00058 16.7 4.8 62 5-66 14-80 (542)
99 pfam03487 IL13 Interleukin-13. 39.4 18 0.00046 17.3 1.7 25 36-60 13-37 (43)
100 KOG3904 consensus 39.4 13 0.00032 18.2 0.9 29 34-62 11-40 (209)
101 cd01284 Riboflavin_deaminase-r 38.3 25 0.00063 16.5 2.3 40 3-58 18-57 (115)
102 KOG0245 consensus 35.3 24 0.0006 16.6 1.8 24 33-62 55-78 (1221)
103 COG0554 GlpK Glycerol kinase [ 32.1 42 0.0011 15.2 4.8 56 5-67 16-76 (499)
104 PRK09605 O-sialoglycoprotein e 30.9 44 0.0011 15.1 4.1 53 6-67 14-72 (536)
105 TIGR00326 eubact_ribD riboflav 30.2 34 0.00088 15.7 1.9 39 4-59 19-58 (393)
106 PRK00047 glpK glycerol kinase; 29.9 45 0.0012 15.0 4.5 56 5-67 16-76 (498)
107 PRK10939 autoinducer-2 (AI-2) 26.8 52 0.0013 14.7 4.0 57 5-67 14-76 (521)
108 pfam00383 dCMP_cyt_deam_1 Cyti 26.5 52 0.0013 14.6 2.5 45 3-59 24-68 (104)
109 KOG1794 consensus 25.3 55 0.0014 14.5 4.3 53 5-65 14-66 (336)
110 TIGR02493 PFLA pyruvate format 23.4 46 0.0012 14.9 1.6 36 30-65 59-101 (243)
111 TIGR01311 glycerol_kin glycero 21.7 65 0.0017 14.1 3.8 59 5-70 12-79 (518)
112 pfam08918 PhoQ_Sensor PhoQ Sen 21.1 67 0.0017 14.0 2.2 17 8-24 77-93 (180)
113 pfam11673 DUF3269 Protein of u 20.0 71 0.0018 13.9 4.6 52 10-65 8-70 (73)
No 1
>PRK00714 dinucleoside polyphosphate hydrolase; Reviewed
Probab=100.00 E-value=1.3e-42 Score=268.56 Aligned_cols=146 Identities=44% Similarity=0.860 Sum_probs=130.9
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--CCCCCCCCCCEEECC
Q ss_conf 956606999984898399999268877666872201211507888888999999999837552--222201366124116
Q gi|254780557|r 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKS--ISLLGQGDSYIQYDF 78 (160)
Q Consensus 1 ~yR~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~--~~~~~~~~~~~~~~~ 78 (160)
-||+|||+||+|.+|+||++||++. +.|+|||||||.||||++||.||++||||+++ .....++..|+.|..
T Consensus 6 ~YR~nVg~vi~n~~g~vl~~~R~~~------~~Wq~PqGgid~gE~~~~aa~REl~EE~Gi~~~~v~ii~~~~~wl~Yd~ 79 (156)
T PRK00714 6 GYRPNVGIILLNRQGQVFWGRRIGQ------HSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDL 79 (156)
T ss_pred CCCCCEEEEEEECCCCEEEEEECCC------CCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEC
T ss_conf 8887639999909992999998899------9767994500799899999999999985898200045762588389858
Q ss_pred CCCCC---CCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHCCHHHHHHHHHHHHHHHH
Q ss_conf 32220---000112344337999980475430105788888886003760378997630000137999999999999860
Q gi|254780557|r 79 PAHCI---QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDFKKEAYRQVVADFAYLIK 155 (160)
Q Consensus 79 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~fk~~vy~~~l~~l~~~i~ 155 (160)
|.... ....+.+|.+.||++.|.+...+|++++.. .+||++|+|++++++++.++||||+||++|+++|+++|.
T Consensus 80 P~~~~~~~~~~~y~GQ~QkWfl~rf~g~d~~Inl~~~~---~pEF~~wkW~~~~~~~~~vv~FKr~vY~~vl~ef~~~l~ 156 (156)
T PRK00714 80 PKRLVRRDWKPVCIGQKQKWFLLRLTGDDSEINLNTSH---HPEFDAWRWVSYWYPLRQVVPFKRDVYRRVLKEFASLLL 156 (156)
T ss_pred CHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEECCCCC---CCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf 17764243058702636899999981798517668999---986233475888997776333189999999999988649
No 2
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=100.00 E-value=4.3e-40 Score=253.90 Aligned_cols=142 Identities=44% Similarity=0.799 Sum_probs=125.0
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC--CCCCCCEEECC
Q ss_conf 9566069999848983999992688776668722012115078888889999999998375522222--01366124116
Q gi|254780557|r 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLL--GQGDSYIQYDF 78 (160)
Q Consensus 1 ~yR~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~--~~~~~~~~~~~ 78 (160)
+||+||||||+|++|+||++||++.+ |.|+||||+||.|||+.+||.||++|||||++.... ..+..|+.|..
T Consensus 1 ~YR~~Vg~vi~n~~~~vl~~~R~~~~-----~~W~~P~G~i~~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~Y~~ 75 (147)
T cd03671 1 PYRPNVGVVLFNEDGKVFVGRRIDTP-----GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDL 75 (147)
T ss_pred CCCCEEEEEEEECCCEEEEEEECCCC-----CCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEEC
T ss_conf 99877899999289949999968998-----8887980024799999999999999986966231355564027358607
Q ss_pred CCCCC---CCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHCCHHHHHHHHHHH
Q ss_conf 32220---0001123443379999804754301057888888860037603789976300001379999999999
Q gi|254780557|r 79 PAHCI---QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDFKKEAYRQVVADF 150 (160)
Q Consensus 79 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~fk~~vy~~~l~~l 150 (160)
|.... ....+.+|.++||++.+.+...+|++++. ..+||++|+|++++++++.++||||++|++|+++|
T Consensus 76 P~~~~~~~~~~~~~GQ~Qkwfl~~~~g~d~~I~l~~~---~~~EF~~wrW~~~~e~~~~vv~FKr~vY~~vl~eF 147 (147)
T cd03671 76 PPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAP---EHPEFDEWRWVPLEELPDLIVPFKRPVYEAVLKEF 147 (147)
T ss_pred HHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCCCCC---CCCCEEEEEECCHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 2665430146645797879999998779650767999---99874564878889976755254199999999759
No 3
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.94 E-value=8.2e-27 Score=176.54 Aligned_cols=124 Identities=31% Similarity=0.456 Sum_probs=94.3
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 66069999848983999992688776668722012115078888889999999998375522222013661241163222
Q gi|254780557|r 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHC 82 (160)
Q Consensus 3 R~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~ 82 (160)
|.+||++|+|++|++||+|+.+.+ .|.|+||||+||+|||+.+||+||++||||+++....... ..
T Consensus 2 ~igv~avi~n~~~~vLlv~~~~~~----~g~W~lPgG~ve~GEt~~eaa~REv~EEtGl~v~~~~~l~---~~------- 67 (127)
T cd04670 2 TVGVGGLVLNEKNEVLVVQERNKT----PNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVG---FR------- 67 (127)
T ss_pred EEEEEEEEEECCCEEEEEEECCCC----CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEE---EE-------
T ss_conf 678999999799999999977899----9958998203159979999999999998794568975898---99-------
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHCCHHHHHHHHH
Q ss_conf 000011234433799998047543010578888888600376037899763000013799999999
Q gi|254780557|r 83 IQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDFKKEAYRQVVA 148 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~fk~~vy~~~l~ 148 (160)
.......++...+|.+.+.+...+++++ ..|+.+++|++++|+++. |++.+++|.++.
T Consensus 68 ~~~~~~~~~~~~~f~~~~~~~~~~i~~~------~~Ei~e~~W~~~~El~~~--p~~~~~~r~~~~ 125 (127)
T cd04670 68 HAHPGAFGKSDLYFICRLKPLSFDINFD------TSEIAAAKWMPLEEYISQ--PITSEVNRLILD 125 (127)
T ss_pred ECCCCCCCCEEEEEEEEEECCCCCCCCC------CCCEEEEEEECHHHHHCC--CCCHHHHHHHHC
T ss_conf 6079888971799999998188877889------850578788369998708--870466665612
No 4
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.93 E-value=3e-25 Score=167.43 Aligned_cols=126 Identities=22% Similarity=0.279 Sum_probs=85.0
Q ss_pred EEEEE---ECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 69999---848983999992688776668722012115078888889999999998375522222013661241163222
Q gi|254780557|r 6 VGILI---LNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHC 82 (160)
Q Consensus 6 V~vvi---~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~ 82 (160)
|.+|| +|++.+|||.||+. ..+|+|+||||+||+|||+.+||+||++|||||++............+..
T Consensus 2 ~~~v~~~~~~~~~~~LlLkR~~----~~~g~W~~p~G~iE~gEs~~eaA~REl~EETGl~~~~l~~~~~~~~~y~~---- 73 (131)
T cd04695 2 VSGVLLRSLDKETKVLLLKRVK----TLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEA---- 73 (131)
T ss_pred EEEEEEEEECCCCEEEEEECCC----CCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCEEEEEEEC----
T ss_conf 5799999989988899997689----99995869823346999999999998889778774347712426889984----
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCH-HCCHHHHHHHHHHH
Q ss_conf 000011234433799998047543010578888888600376037899763000-01379999999999
Q gi|254780557|r 83 IQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVV-DFKKEAYRQVVADF 150 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~-~fk~~vy~~~l~~l 150 (160)
... ... ...+++.+.....++.+ +.||++|+|++++++.++.. |.+|.+++.+..+|
T Consensus 74 --~~~-~i~-~~~~f~~~~~~~~~v~l-------s~Eh~~y~W~~~eea~~ll~~~~~r~~l~~~~~~~ 131 (131)
T cd04695 74 --NDN-RIL-MAPVFVGFVPPHQEVVL-------NHEHTEYRWCSFAEALELAPFPGQRALYDHVWRYF 131 (131)
T ss_pred --CCC-EEE-EEEEEEEEECCCCCCCC-------CCCCCCCEECCHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf --897-699-99999999389997825-------62032089718999996769967899999999759
No 5
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.93 E-value=5.6e-25 Score=165.86 Aligned_cols=114 Identities=25% Similarity=0.295 Sum_probs=78.8
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220136612411632220
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCI 83 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
..||++|+|++|+|||+||++. +..|.|.+|||+||+|||+++||+||++||||+++....... ..+..+.
T Consensus 2 ~aV~~vI~~~~g~vLl~kR~~~---~~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~------~~~~~~~ 72 (130)
T cd04681 2 AAVGVLILNEDGELLVVRRARE---PGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLF------SLPNTYP 72 (130)
T ss_pred CEEEEEEEECCCEEEEEEECCC---CCCCCEECCEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEE------EECCCCC
T ss_conf 6799999968999999996899---889909298820659999999998999998695468868999------9764554
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHC
Q ss_conf 000112344337999980475430105788888886003760378997630
Q gi|254780557|r 84 QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNI 134 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~ 134 (160)
...........+|.+.+.+.. ...+..|+.+++||+++|+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~E~~e~~W~~~~el~~~ 115 (130)
T cd04681 73 YGGMEYDTLDLFFVCQVDDKP--------IVKAPDDVAELKWVVPQDIELE 115 (130)
T ss_pred CCCEEEEEEEEEEEEEECCCC--------CCCCCCCEEEEEEECHHHCCHH
T ss_conf 698238999999999987987--------4799982516899868789710
No 6
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.92 E-value=1.7e-25 Score=168.92 Aligned_cols=124 Identities=23% Similarity=0.284 Sum_probs=83.4
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 56606999984898399999268877666872201211507888888999999999837552222201366124116322
Q gi|254780557|r 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAH 81 (160)
Q Consensus 2 yR~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~ 81 (160)
-.++|+++|+|++|+|||+||++ .|.|++|||+||+|||+.+||+||++||||+++....... .+.....
T Consensus 6 ~~~g~~~vv~~~~g~vLL~~r~~------~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~----~~~~~~~ 75 (132)
T cd04677 6 ILVGAGVILLNEQGEVLLQKRSD------TGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLG----VYSGKEF 75 (132)
T ss_pred EEEEEEEEEEECCCEEEEEEECC------CCCEECCEEEECCCCCHHHHHHHHHHHHHCCEEEEEEEEE----EECCCEE
T ss_conf 78579999998999899999889------9949898427669979999999999998695535247999----9778645
Q ss_pred CCC--CCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHCCHHHH
Q ss_conf 200--00112344337999980475430105788888886003760378997630000137999
Q gi|254780557|r 82 CIQ--ENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDFKKEAY 143 (160)
Q Consensus 82 ~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~fk~~vy 143 (160)
... ..........+|.+...+. ....+..|+.+++|++++++++.+.|+.|.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~E~~e~~Wf~~delp~l~~p~~r~~i 131 (132)
T cd04677 76 YVKPNGDDEQYIVTLYYVTKVFGG--------KLVPDGDETLELKFFSLDELPELINPQHKEML 131 (132)
T ss_pred EECCCCCCEEEEEEEEEEEEECCC--------CCCCCCCCEEEEEEECHHHCCCCCCHHHHHHC
T ss_conf 544899847999999999862587--------56799970158999829998344892257560
No 7
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.92 E-value=3.9e-25 Score=166.79 Aligned_cols=122 Identities=22% Similarity=0.193 Sum_probs=82.6
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 66069999848983999992688776668722012115078888889999999998375522222013661241163222
Q gi|254780557|r 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHC 82 (160)
Q Consensus 3 R~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~ 82 (160)
|.+|+++|+|++|+|||+||+..+ ..|.|.||||+||.|||+++||+||++||||+++....+.... .+ .
T Consensus 2 ~v~v~avv~~~~g~vLL~~R~~~~---~~g~W~lPGG~vE~gEt~~~aa~REv~EEtGl~v~~~~l~~~~--~~-----~ 71 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRLRAP---EAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVV--DH-----I 71 (125)
T ss_pred EEEEEEEEEECCCEEEEEEECCCC---CCCEEECCEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEE--CC-----C
T ss_conf 126999999779989999938999---9997939883058998999999999999879785853799998--56-----4
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHCCHHH
Q ss_conf 000011234433799998047543010578888888600376037899763000013799
Q gi|254780557|r 83 IQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDFKKEA 142 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~fk~~v 142 (160)
.... ..+....+|++..... +.. ..+..|+++++|+++++|++.+.++.|+.
T Consensus 72 ~~~~-~~~~~~~~f~~~~~~g--~~~-----~~~~~e~~e~~Wf~~d~LP~~l~~~~r~~ 123 (125)
T cd04679 72 IEEP-PQHWVAPVYLAENFSG--EPR-----LMEPDKLLELGWFALDALPQPLTRATRDA 123 (125)
T ss_pred CCCC-CCEEEEEEEEEEECCC--EEE-----CCCCCEEEEEEEECHHHCCCCCCHHHHHH
T ss_conf 3589-9659999999997388--782-----28998146887898889888659889997
No 8
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.92 E-value=7.2e-25 Score=165.23 Aligned_cols=117 Identities=21% Similarity=0.318 Sum_probs=80.5
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 66069999848983999992688776668722012115078888889999999998375522222013661241163222
Q gi|254780557|r 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHC 82 (160)
Q Consensus 3 R~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~ 82 (160)
|.+|||+|+|++|+|||+||... +..|.|++|||+||+|||+++||+||++|||||++....... .+ ...+
T Consensus 2 ~vgV~~iv~~~~g~vLL~rR~~~---~~~g~W~lPgG~ve~GEs~~~Aa~REv~EEtGl~v~~~~~~~--~~----~~~~ 72 (129)
T cd04678 2 RVGVGVFVLNPKGKVLLGKRKGS---HGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLT--VT----NDVF 72 (129)
T ss_pred CCEEEEEEEECCCEEEEEEECCC---CCCCEEECCEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEE--EE----CCCC
T ss_conf 53799999989995999994789---999949898104058988999999999998798525249999--98----8775
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCC
Q ss_conf 00001123443379999804754301057888888860037603789976300
Q gi|254780557|r 83 IQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIV 135 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i 135 (160)
.... .+....+|.+...+...+. . ..+..|+++++|+++++|+++.
T Consensus 73 ~~~~--~h~i~~~f~~~~~~g~~~~--~---~~ep~e~~~~~Wf~~deLP~l~ 118 (129)
T cd04678 73 EEEG--KHYVTIFVKAEVDDGEAEP--N---KMEPEKCEGWEWFDWEELPSVD 118 (129)
T ss_pred CCCC--CEEEEEEEEEEEECCCCCC--C---CCCCHHCCEEEEECHHHCCCCC
T ss_conf 7789--4699999999983782364--7---7993240130899989986986
No 9
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.92 E-value=1.5e-24 Score=163.36 Aligned_cols=116 Identities=22% Similarity=0.345 Sum_probs=79.5
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220136612411632220
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCI 83 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
.+|+++|+|++|++||+||+..+ ..++|+|.||||++|+|||+++||+||++||||+++........ .. +.
T Consensus 2 v~V~~~I~~~~g~vLl~kR~~~~-~~~~G~W~~PGG~ie~gEt~~~aa~REl~EEtGl~v~~~~~~~~--~~------~~ 72 (129)
T cd04699 2 VAVAALIVKDVGRILILKRSKDE-RTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPS--TV------TH 72 (129)
T ss_pred EEEEEEEEECCCEEEEEEECCCC-CCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEE--EE------EE
T ss_conf 89999999899989999808999-99998188980506599899999999999987957787688769--99------97
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHH
Q ss_conf 000112344337999980475430105788888886003760378997630000
Q gi|254780557|r 84 QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVD 137 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~ 137 (160)
...........+|.+...+ .......|+++++|++++||+++..+
T Consensus 73 ~~~~~~~~~~~~f~~~~~~---------~~~~~~~E~~e~~Wv~~eeL~~L~~d 117 (129)
T cd04699 73 EDSGVYNVIYLVFVCEALS---------GAVKLSDEHEEYAWVTLEELAILKAD 117 (129)
T ss_pred CCCCCEEEEEEEEEEEECC---------CCCCCCCCCEEEEEEEHHHHHHCCCC
T ss_conf 2799508999999986248---------86878865206699848997548797
No 10
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.91 E-value=2.5e-24 Score=162.04 Aligned_cols=120 Identities=12% Similarity=0.164 Sum_probs=84.1
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220136612411632220
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCI 83 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
+||+++|+|++|++||+||.+. ++.|.|.+|||+|++|||+.+||+||++||||+++......+.+.+.+.+++.+.
T Consensus 13 v~V~~vI~n~~g~iLL~kR~~~---p~~g~W~~PGG~i~~gEt~~~a~~Re~~eE~Gl~i~~~~~~~~Gv~eh~y~d~~~ 89 (144)
T cd03430 13 VSIDLIVENEDGQYLLGKRTNR---PAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNFF 89 (144)
T ss_pred EEEEEEEECCCCCEEEEECCCC---CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEEEECCCCCC
T ss_conf 7999999979996999981699---8899498983447799799999999999974971640344897758998267777
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHC
Q ss_conf 000112344337999980475430105788888886003760378997630
Q gi|254780557|r 84 QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNI 134 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~ 134 (160)
......+.....|.+...+. .....+.|+++|+|++++|++++
T Consensus 90 ~~~~~~H~V~l~y~~~~~~~--------e~~~~ddeh~e~~Wf~~del~~~ 132 (144)
T cd03430 90 GDDFSTHYVVLGYVLKLSSN--------ELLLPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred CCCCCEEEEEEEEEEEECCC--------CCCCCHHHCCEEEEECHHHHHCC
T ss_conf 89853099999999995589--------75599457006699679995217
No 11
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.91 E-value=1e-24 Score=164.32 Aligned_cols=119 Identities=23% Similarity=0.269 Sum_probs=77.2
Q ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 06999984898399999268877666872201211507888888999999999837552222201366124116322200
Q gi|254780557|r 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCIQ 84 (160)
Q Consensus 5 ~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
+|+ +|++++++|||+||++. +...|.|+||||++|+|||+++||+||++|||||++....+.........
T Consensus 2 av~-vvl~~~~~vLL~~R~~~--~~~~G~W~~PGG~ve~GEt~~~aa~REl~EEtGl~v~~~~l~~~~~~~~~------- 71 (120)
T cd04683 2 AVY-VLLRRDDEVLLQRRANT--GYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRR------- 71 (120)
T ss_pred EEE-EEEEECCEEEEEECCCC--CCCCCEEECCEEECCCCCCHHHHHHHHHHHHHCCEEEECEEEEEEEEECC-------
T ss_conf 899-99993999999977899--99999798975887799999999999988876938873408999988326-------
Q ss_pred CCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHCCH
Q ss_conf 00112344337999980475430105788888886003760378997630000137
Q gi|254780557|r 85 ENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDFKK 140 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~fk~ 140 (160)
..........+|.+..... ++. ..+..|+++++|+++++|++.++||.|
T Consensus 72 ~~~~~~~~~~~f~~~~~~g--~p~-----~~~p~e~~~~~Wf~~deLP~~~~~~~~ 120 (120)
T cd04683 72 TEDIESRIGLFFTVRRWSG--EPR-----NCEPDKCAELRWFPLDALPDDTVDYVR 120 (120)
T ss_pred CCCCCEEEEEEEEEEEECC--EEE-----CCCCCCEEEEEEECHHHCCCCCCCCCC
T ss_conf 8998799999999997478--986-----189981458999998899886577749
No 12
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.91 E-value=9.9e-24 Score=158.61 Aligned_cols=115 Identities=24% Similarity=0.304 Sum_probs=77.0
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220136612411632220
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCI 83 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
++|+++|+|++|+|||+||.. +.|.|.||||+||.|||+.+||+||++|||||++........ ....+...+
T Consensus 3 v~V~avI~~~~g~vLl~r~~~-----~~g~W~lPGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~--~~~~~~~~~- 74 (125)
T cd04696 3 VTVGALIYAPDGRILLVRTTK-----WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMV--QEAIFSEEF- 74 (125)
T ss_pred CEEEEEEEECCCEEEEEEECC-----CCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEE--EECCCCCCC-
T ss_conf 179999994999899999369-----999598986588699599999999999975957653589988--822126767-
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHH
Q ss_conf 000112344337999980475430105788888886003760378997630000
Q gi|254780557|r 84 QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVD 137 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~ 137 (160)
....++..+.|.+... ......+.|+++++|++++++.++..+
T Consensus 75 ------~~~~h~~~~~~~~~~~-----~~~~~~~~E~~e~~Wv~~~el~~~~l~ 117 (125)
T cd04696 75 ------HKPAHFVLFDFFARTD-----GTEVTPNEEIVEWEWVTPEEALDYPLN 117 (125)
T ss_pred ------CCCCEEEEEEEEEEEE-----CCCCCCCCCCCEEEEECHHHHHCCCCC
T ss_conf ------7776599999999980-----892777835429999438895659888
No 13
>PRK09438 ntpA dATP pyrophosphohydrolase; Provisional
Probab=99.90 E-value=4.8e-23 Score=154.63 Aligned_cols=127 Identities=24% Similarity=0.383 Sum_probs=90.2
Q ss_pred CCC--EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC---EEE
Q ss_conf 566--069999848983999992688776668722012115078888889999999998375522222013661---241
Q gi|254780557|r 2 YRR--GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSY---IQY 76 (160)
Q Consensus 2 yR~--~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~---~~~ 76 (160)
|+. +|.|||+|.+++|||+||++. +|+|++|||++|+||++.+||+||++|||||+.......+..+ ..|
T Consensus 5 yk~p~svlvvi~~~~~~vLl~~R~~~-----~~~W~~~~G~~e~gE~~~~aa~RE~~EEtGi~~~~~~~~L~D~~~~~~y 79 (148)
T PRK09438 5 YKIPVSVLVVIYTPDLKVLMLQRADD-----PDFWQSVTGSLEEGETPAQTAAREVKEETGIDVAAEQLTLIDCQRTVEY 79 (148)
T ss_pred CCCCCEEEEEEECCCCCEEEEEECCC-----CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCEEEE
T ss_conf 89997799999859998999997489-----9967098312689979899999999998686225671364266520232
Q ss_pred C-CCCCCCCC-CCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCH-HCCHHH
Q ss_conf 1-63222000-011234433799998047543010578888888600376037899763000-013799
Q gi|254780557|r 77 D-FPAHCIQE-NGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVV-DFKKEA 142 (160)
Q Consensus 77 ~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~-~fk~~v 142 (160)
. ++.+.++. ....++..++|.+.+.. ..++.+ .||++|+|++++++.+.+. |.+++.
T Consensus 80 eI~~~wr~RY~pgv~~n~EhvF~l~l~~-~~~V~L--------sEH~~~~Wl~~~eA~~l~~s~sN~~A 139 (148)
T PRK09438 80 EIFPHWRHRYAPGVTHNTEHWFCLALPH-ERPVVL--------TEHLAYQWLPAEEAAALTKSPSNAEA 139 (148)
T ss_pred ECCHHHCCCCCCCCCCCEEEEEEEECCC-CCCCCC--------CHHHHCCCCCHHHHHHHHCCCCCHHH
T ss_conf 1144222204888524167999998588-997212--------01432452479999998669331999
No 14
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.90 E-value=2e-23 Score=156.86 Aligned_cols=115 Identities=25% Similarity=0.328 Sum_probs=77.6
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCC--C
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220136612411632--2
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPA--H 81 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~--~ 81 (160)
|||+++|+|++|+|||+||.+ .|.|.+|||++|.|||+++||+||++||||+++....... .+..+. .
T Consensus 3 ~gv~~vv~~~~g~vLL~~r~~------~g~W~lPGG~ve~GE~~~~aa~RE~~EEtGl~v~~~~~~~----~~~~~~~~~ 72 (129)
T cd04676 3 PGVTAVVRDDEGRVLLIRRSD------NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVG----IYTGPVHVV 72 (129)
T ss_pred CEEEEEEEECCCEEEEEEECC------CCEEECCCCEECCCCCHHHHHHHHHHHHHCCEEEEEEEEE----EECCCCCCE
T ss_conf 779999997998099999869------9969899257419989899888999997695778727999----972644216
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCH
Q ss_conf 2000011234433799998047543010578888888600376037899763000
Q gi|254780557|r 82 CIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVV 136 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~ 136 (160)
.............+|.+...+.. ....+.|+.+++|+++++++++..
T Consensus 73 ~~~~~~~~~~~~~~f~~~~~~~~--------~~~~~~E~~e~~Wf~~delp~l~~ 119 (129)
T cd04676 73 TYPNGDVRQYLDITFRCRVVGGE--------LRVGDDESLDVAWFDPDGLPPLLM 119 (129)
T ss_pred ECCCCCEEEEEEEEEEEEEECCC--------CCCCCCCEEEEEEECHHHCCCCCC
T ss_conf 27999869999999998872884--------559997178889989989969999
No 15
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.89 E-value=5.4e-23 Score=154.30 Aligned_cols=114 Identities=25% Similarity=0.310 Sum_probs=80.0
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220136612411632220
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCI 83 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
..||++|+|++|+|||+||...+ ..|.|.||||+||+|||+.+||+||++||||+++....... .+.+..+.
T Consensus 14 ~AagavV~n~~g~vLLvrr~~~p---~~g~W~lPgG~vE~GEt~~eAa~REv~EETGl~v~~~~~l~--~~~~~~~~--- 85 (142)
T cd04700 14 RAAGAVILNERNDVLLVQEKGGP---KKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLG--TYLGRFDD--- 85 (142)
T ss_pred EEEEEEEEECCCEEEEEEECCCC---CCCEEECCEECCCCCCCHHHHHHHHHHHHHCCEEEEEEEEE--EEEEECCC---
T ss_conf 49999999699989999976899---89989798333879969999999999996697888888989--99468079---
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCH
Q ss_conf 00011234433799998047543010578888888600376037899763000
Q gi|254780557|r 84 QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVV 136 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~ 136 (160)
+ ......+|++...+.... ...+.|..+.+|++++|+++++.
T Consensus 86 --g--~~~~~~~fl~~~~~~~~~-------p~~~dE~~e~~Wf~~~El~~L~~ 127 (142)
T cd04700 86 --G--VLVLRHVWLAEPEGQTLA-------PKFTDEIAEASFFSREDVAQLYA 127 (142)
T ss_pred --C--CEEEEEEEEEEECCCCCC-------CCCCCCEEEEEEECHHHHHHHHC
T ss_conf --9--889999999997488325-------69998767889985999555450
No 16
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.89 E-value=8.5e-23 Score=153.16 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=80.7
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220136612411632220
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCI 83 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
.+|+++|+..+|+||+++|.+.+..+++|+|+||||++|.|||+.+||+||++||||+++......... .++.
T Consensus 1 ~~~a~al~~~~g~vLl~~R~~~~~~~~pg~W~~pGG~~e~~E~~~~~~~RE~~EE~gl~~~~~~~~~~~----~~~~--- 73 (122)
T cd04682 1 SGVALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFR----VYPS--- 73 (122)
T ss_pred CCEEEEEEECCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHEEEEE----EECC---
T ss_conf 947999996799799998999999998993879966667998999999999999888856700020278----5215---
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHH
Q ss_conf 00011234433799998047543010578888888600376037899763
Q gi|254780557|r 84 QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPN 133 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~ 133 (160)
........+|.+........ .....|+.+++|++++|+++
T Consensus 74 ---~~~~~~~~~F~~~l~~~~~~-------~~~~~Egq~~~W~~~eEll~ 113 (122)
T cd04682 74 ---ASPPGTEHVFVVPLTAREDA-------ILFGDEGQALRLMTVEEFLA 113 (122)
T ss_pred ---CCCCCEEEEEEEEEECCCCC-------CCCCCCCCEEEEEEHHHHHH
T ss_conf ---78994799999840056315-------35687330768745999964
No 17
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.89 E-value=5e-23 Score=154.52 Aligned_cols=114 Identities=23% Similarity=0.304 Sum_probs=75.7
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 69999848983999992688776668722012115078888889999999998375522222013661241163222000
Q gi|254780557|r 6 VGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCIQE 85 (160)
Q Consensus 6 V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~ 85 (160)
|+++|+|++|+|||+||... +.++|+|+||||+||.|||+.+||.||++||||+++......... .+.++
T Consensus 4 v~avI~~~~g~vLl~~R~~~--~~~~g~W~~PGG~ve~gE~~~~a~~RE~~EEtGl~v~~~~~~~~~--~~~~~------ 73 (124)
T cd03425 4 VAAIIIDDDGRILIAQRPAG--KHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATV--EHDYP------ 73 (124)
T ss_pred EEEEEEECCCEEEEEECCCC--CCCCCEEECCEEEECCCCCHHHHHHHHHHHHHCCEEEECCEEEEE--EEECC------
T ss_conf 99999979998999986899--999994979876796999999999999999869704674699999--89889------
Q ss_pred CCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHH-CCHH
Q ss_conf 0112344337999980475430105788888886003760378997630000-1379
Q gi|254780557|r 86 NGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVD-FKKE 141 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~-fk~~ 141 (160)
........|.+.... .+ ....|+++++|++++++.++..| ..++
T Consensus 74 --~~~~~l~~f~~~~~~--g~--------~~~~E~~~~~Wv~~~el~~l~~~~a~~~ 118 (124)
T cd03425 74 --DKRVTLHVFLVELWS--GE--------PQLLEHQELRWVPPEELDDLDFPPADVP 118 (124)
T ss_pred --CEEEEEEEEEEEECC--CC--------CCCCCCCCCEEEEHHHCCCCCCCCCHHH
T ss_conf --918999999989707--80--------8336453659802999364999826189
No 18
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.89 E-value=4.4e-23 Score=154.82 Aligned_cols=115 Identities=23% Similarity=0.273 Sum_probs=76.6
Q ss_pred CCCCEEE-EEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCC
Q ss_conf 9566069-999848983999992688776668722012115078888889999999998375522222013661241163
Q gi|254780557|r 1 MYRRGVG-ILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFP 79 (160)
Q Consensus 1 ~yR~~V~-vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~ 79 (160)
|=+..|+ +||+|.+|++|++||... ..+.|+|+||||+||+|||+++|++||++||+|+++........ ..+.++
T Consensus 1 mk~i~V~~aii~~~~~~~Li~~R~~~--~~~~g~WEFPGGKvE~gEt~~~Al~REl~EElgi~v~~~~~~~~--~~~~y~ 76 (129)
T PRK10776 1 MKKLQIAVGIIRNENNEIFITRRAAD--AHMANKLEFPGGKIEAGETPEQALIRELQEEVGITPQQATLFEK--LEYEFP 76 (129)
T ss_pred CCEEEEEEEEEEECCCEEEEEECCCC--CCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCEEEEECCEEEE--EEEECC
T ss_conf 97689999999948998999996999--98898591992852799798999999987751716760529999--999899
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHH
Q ss_conf 2220000112344337999980475430105788888886003760378997630000
Q gi|254780557|r 80 AHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVD 137 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~ 137 (160)
. ......+|.+. ..+..+ ...|+++++|++.+++.++-.|
T Consensus 77 ~--------~~i~l~~f~~~----~~~G~~------~~~e~~~~~Wv~~~eL~~~~~~ 116 (129)
T PRK10776 77 D--------RHITLWFWLVE----SWEGEP------WGKEGQPGRWVSQVALNADDFP 116 (129)
T ss_pred C--------EEEEEEEEEEE----ECCCEE------CCCCCCCCEEEEHHHCCCCCCC
T ss_conf 8--------09999999999----716999------7565767599778883659978
No 19
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.89 E-value=1.1e-22 Score=152.48 Aligned_cols=128 Identities=18% Similarity=0.210 Sum_probs=92.7
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC--CCCCEEECCCCC
Q ss_conf 606999984898399999268877666872201211507888888999999999837552222201--366124116322
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQ--GDSYIQYDFPAH 81 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~--~~~~~~~~~~~~ 81 (160)
.+|+|+|.|.+|+|||+||+.+. ..++|.|.+|||++|.|||+.+||+||++|||||++...... ........+|..
T Consensus 2 VgVa~ii~d~dgrvLL~rRs~~~-~~~Pg~W~~PGG~ve~GEt~~eaa~REl~EEtGL~v~p~~~~~~~l~l~EsvyP~~ 80 (143)
T cd04694 2 VGVAVLLQSSDQKLLLTRRASSL-RIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPL 80 (143)
T ss_pred CEEEEEEECCCCEEEEEEECCCC-CCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCEEEEEEEECCCCC
T ss_conf 25999999899929999858988-89998171887745899898999999998976763470112212446876307740
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHC
Q ss_conf 20000112344337999980475430105788888886003760378997630
Q gi|254780557|r 82 CIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNI 134 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~ 134 (160)
........+....++.++...+..++. ..-..+..|.+.+.|.+.+.+...
T Consensus 81 l~~glP~~HhIviy~~~~~~~~~~~~q--~~l~~~~~ev~~~~Wl~~~~~~~~ 131 (143)
T cd04694 81 LSRGLPKRHHIVVYILVKSSETHQQLQ--ARLQPDPNEVSAAAWLDKSLAKAV 131 (143)
T ss_pred CCCCCCCCEEEEEEEEEEECCCHHHHH--CCCCCCHHHCCEEEECCHHHHHHH
T ss_conf 145887633899999998366034220--123789667642485189999999
No 20
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.89 E-value=1.5e-22 Score=151.78 Aligned_cols=112 Identities=21% Similarity=0.211 Sum_probs=75.5
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220136612411632220
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCI 83 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
.+|+++|+|++|+|||+||.+ .+.|.+|||+||.|||+++||+||++||||+++......+. .+ .
T Consensus 1 vgv~~vv~~~~g~vLL~rr~~------~~~W~lPGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~l~~---~~------~ 65 (120)
T cd04680 1 LGARAVVTDADGRVLLVRHTY------GPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLG---VY------Y 65 (120)
T ss_pred CEEEEEEECCCCEEEEEEECC------CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEE---EE------E
T ss_conf 979999992999099998679------99199995471699899999999999986975551547999---98------2
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHC
Q ss_conf 0001123443379999804754301057888888860037603789976300001
Q gi|254780557|r 84 QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDF 138 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~f 138 (160)
...........+|.+...+ ......+.|+.+++|+++++|++.+.|.
T Consensus 66 ~~~~~~~~~~~~f~~~~~~--------~~~~~~~~E~~e~~Wf~~d~LPe~l~p~ 112 (120)
T cd04680 66 HSASGSWDHVIVFRARADT--------QPVIRPSHEISEARFFPPDALPEPTTPA 112 (120)
T ss_pred CCCCCCCEEEEEEEEEECC--------CCCCCCCHHHHCEEEECHHHCCCCCCHH
T ss_conf 5899975399999998248--------8867998367411398888988878977
No 21
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.88 E-value=2.1e-22 Score=150.92 Aligned_cols=118 Identities=20% Similarity=0.257 Sum_probs=78.7
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220136612411632220
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCI 83 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
.+|++||.+ +|+|||+||... ++.|.|.+|||+||+|||+++||+||++||||+++............+..+
T Consensus 1 ~g~~avi~~-~~~vLL~rr~~~---~~~g~W~lPGG~ve~gEt~~~aa~REv~EETGl~v~~~~~l~~~~~~~~~~---- 72 (128)
T cd04684 1 FGAYAVIPR-DGKLLLIQKNGG---PYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSP---- 72 (128)
T ss_pred CEEEEEEEE-CCEEEEEEECCC---CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEEEECC----
T ss_conf 989999993-999999997789---989829898560779989999999999987293788633889999999789----
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCC
Q ss_conf 0001123443379999804754301057888888860037603789976300
Q gi|254780557|r 84 QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIV 135 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i 135 (160)
......+....+|.+...+....+ .....|..+++|++++|+++..
T Consensus 73 ~~~~~~~~v~~~f~~~~~~g~~~~------~~~~ee~~e~~W~~~del~e~~ 118 (128)
T cd04684 73 DGDYDAHHLCVFYDARVVGGALPV------QEPGEDSHGAAWLPLDEAIERL 118 (128)
T ss_pred CCCEEEEEEEEEEEEEECCCCCCC------CCCCCCEEEEEEECHHHHHCCC
T ss_conf 997767999999999986894056------8999830599995889942312
No 22
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.88 E-value=2.5e-22 Score=150.47 Aligned_cols=125 Identities=23% Similarity=0.311 Sum_probs=82.5
Q ss_pred CEEEEEEECCC---CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCC
Q ss_conf 60699998489---839999926887766687220121150788888899999999983755222220136612411632
Q gi|254780557|r 4 RGVGILILNQD---DLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPA 80 (160)
Q Consensus 4 ~~V~vvi~n~~---~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~ 80 (160)
.++|+|+++.. .+|||++|.+ .|.|.||||+||+|||+.+||+||++|||||++......... .|
T Consensus 2 ~aaG~vv~r~~~~~~~vLLv~r~~------~~~W~lPgG~ve~gEs~~eaa~RE~~EEtGl~~~~~~~~~~~--~~---- 69 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPR------GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTI--RY---- 69 (131)
T ss_pred EEEEEEEEEECCCCEEEEEEEECC------CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCEE--EE----
T ss_conf 889999997169967999999589------997999824527997999999999999879538984271166--89----
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCH-HCCHHHHHHHH
Q ss_conf 22000011234433799998047543010578888888600376037899763000-01379999999
Q gi|254780557|r 81 HCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVV-DFKKEAYRQVV 147 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~-~fk~~vy~~~l 147 (160)
.+........+...+|.+...+....+ .++.|+++++|++++++++++. |..|.+.++++
T Consensus 70 ~~~~~~~~~~~~v~~f~~~~~~~~~~~-------~~~~e~~~~~W~~~~ea~~~l~~~~~r~il~~al 130 (131)
T cd03673 70 WFSSSGKRVHKTVHWWLMRALGGEFTP-------QPDEEVDEVRWLPPDEARDRLSYPNDRELLRAAL 130 (131)
T ss_pred EEECCCCEEEEEEEEEEEEEECCCCCC-------CCCCCCCEEEEEEHHHHHHHCCCHHHHHHHHHHH
T ss_conf 973499607889999999996795320-------7886541799921999977659987999999972
No 23
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.88 E-value=1.5e-22 Score=151.65 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=75.9
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 66069999848983999992688776668722012115078888889999999998375522222013661241163222
Q gi|254780557|r 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHC 82 (160)
Q Consensus 3 R~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~ 82 (160)
+.+|+++|++ +|+|||+||.+ .|.|.+|||+||+|||+++||+||++||||+++....+... +.. ...
T Consensus 2 ~v~V~~vv~~-dg~vLL~rr~~------~g~W~lPGG~ve~gEt~~eaa~REv~EETGl~v~~~~l~~v--~~~---~~~ 69 (123)
T cd04672 2 KVDVRAAIFK-DGKILLVREKS------DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAV--DDR---NKH 69 (123)
T ss_pred CCEEEEEEEE-CCEEEEEEECC------CCEEECCCEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEE--ECC---CCC
T ss_conf 3209999998-99999999889------99398984663799899999999999977909998589999--835---432
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHH
Q ss_conf 0000112344337999980475430105788888886003760378997630000
Q gi|254780557|r 83 IQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVD 137 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~ 137 (160)
............+|.+...+.. ...+.|.++++||++++|+++..+
T Consensus 70 ~~~~~~~~~~~~~f~~~~~~g~---------~~~~~E~~e~~Wf~~deLP~L~~~ 115 (123)
T cd04672 70 HPPPQPYQVYKLFFLCEILGGE---------FKPNIETSEVGFFALDDLPPLSEK 115 (123)
T ss_pred CCCCCCEEEEEEEEEEEECCCC---------CCCCCHHHEEEEECHHHCCCCCCC
T ss_conf 7999524999999999987893---------888945643679888899878756
No 24
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.88 E-value=1.6e-22 Score=151.54 Aligned_cols=109 Identities=23% Similarity=0.180 Sum_probs=75.3
Q ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 06999984898399999268877666872201211507888888999999999837552222201366124116322200
Q gi|254780557|r 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCIQ 84 (160)
Q Consensus 5 ~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
.|+++|+|++|+|||+||... ...|.|.||||+||+|||+++||+||++||||+++....+.. .. .
T Consensus 2 vV~avi~~~~g~vLLv~r~~~---~~~g~W~lPGG~vE~GEt~eeaa~REv~EETGl~v~~~~l~~----v~-------~ 67 (123)
T cd04671 2 IVAAVILNNQGEVLLIQEAKR---SCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLS----VE-------E 67 (123)
T ss_pred EEEEEEEECCCEEEEEEECCC---CCCCEEECCEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEE----EE-------E
T ss_conf 899999988998999996589---999959798018049989999999999997498889777999----99-------2
Q ss_pred CCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHC
Q ss_conf 00112344337999980475430105788888886003760378997630
Q gi|254780557|r 85 ENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNI 134 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~ 134 (160)
.........|.+...+. .+... ..++.|+.+++|+++++|+..
T Consensus 68 --~~~~~~~~~f~~~~~~G----~l~~~-~~~~~E~~ea~Wf~~deLP~p 110 (123)
T cd04671 68 --QGGSWFRFVFTGNITGG----DLKTE-KEADSESLQARWYSNKDLPLP 110 (123)
T ss_pred --CCCEEEEEEEEEEEECC----EECCC-CCCCCCEEEEEEECHHHCCCC
T ss_conf --69809999999999276----51168-999987799899888998687
No 25
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.88 E-value=4.8e-22 Score=148.79 Aligned_cols=120 Identities=24% Similarity=0.242 Sum_probs=73.1
Q ss_pred EEEEEEEC-CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC--CEEECCCCC
Q ss_conf 06999984-898399999268877666872201211507888888999999999837552222201366--124116322
Q gi|254780557|r 5 GVGILILN-QDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDS--YIQYDFPAH 81 (160)
Q Consensus 5 ~V~vvi~n-~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~--~~~~~~~~~ 81 (160)
.++++|+| ++|+|||+||.+ .|.|.+|||+||+|||+.+||+||++|||||++......... ...+..+..
T Consensus 4 ~~~~~Vv~~~~g~vLLv~~~~------~g~W~lPGG~ve~gEt~~~Aa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 77 (138)
T cd03674 4 TASAFVVNPDRGKVLLTHHRK------LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGH 77 (138)
T ss_pred EEEEEEEECCCCEEEEEEECC------CCEEECCCCEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEECCC
T ss_conf 799999978999899998659------99298996586798899999999999987987322256043405789876685
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHH
Q ss_conf 20000112344337999980475430105788888886003760378997630000
Q gi|254780557|r 82 CIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVD 137 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~ 137 (160)
..............|.+..... + .....+.|+++++|+++++++++..+
T Consensus 78 ~~~~~~~~~h~~v~f~~~~~~~--~-----~~~~~~~E~~~~~W~~~~el~~l~~~ 126 (138)
T cd03674 78 PKRGVPGHLHLDLRFLAVAPAD--D-----VAPPKSDESDAVRWFPLDELASLELP 126 (138)
T ss_pred CCCCCCCEEEEEEEEEEEECCC--C-----CCCCCCCCCCEEEEEEHHHCCCCCCC
T ss_conf 6788887699999999996288--8-----66689973210299859993025899
No 26
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.88 E-value=3.7e-22 Score=149.46 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=77.3
Q ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 06999984898399999268877666872201211507888888999999999837552222201366124116322200
Q gi|254780557|r 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCIQ 84 (160)
Q Consensus 5 ~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
.|.+.|++.+|+||++||..+ ..++|+|.||||+||+|||+++|++||++||||+++........ +.+.++
T Consensus 5 ~Vvaaii~~~~rvLi~~R~~~--~~~~g~WEFPGGKvE~gEs~~~Al~REl~EElgi~v~~~~~l~~--~~~~~~----- 75 (135)
T PRK10546 5 DVVAAIIERDGKILLAQRPAH--SDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYIAS--HQREVS----- 75 (135)
T ss_pred EEEEEEEEECCEEEEEECCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCEEEE--EEEECC-----
T ss_conf 999999995999999988999--99998592983216898798999988878750958984568999--988779-----
Q ss_pred CCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCH-HCCHHHHHHHHHH
Q ss_conf 0011234433799998047543010578888888600376037899763000-0137999999999
Q gi|254780557|r 85 ENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVV-DFKKEAYRQVVAD 149 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~-~fk~~vy~~~l~~ 149 (160)
+... .+..|.+...... ....|+++++|++++|+.++-+ |-..++.++.++.
T Consensus 76 -----~~~i--~l~~~~~~~~~g~------~~~~e~~~~~Wv~~~el~~~~~~pAd~~il~~l~a~ 128 (135)
T PRK10546 76 -----GRII--HLHAWHVPDFHGT------LQAHEHQALVWCTPEEALRYPLAPADIPLLEAFMAL 128 (135)
T ss_pred -----CEEE--EEEEEEEEEECCE------EEECCCCCCEEEEHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf -----9899--9999999988881------821456756992389935499885859999999997
No 27
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.88 E-value=2.8e-22 Score=150.11 Aligned_cols=116 Identities=20% Similarity=0.164 Sum_probs=75.4
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220136612411632220
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCI 83 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
.+||++|++ +|+|||+||++. ++.|.|.+|||++|+|||+.+||+||++||||+++........ +.+. .
T Consensus 1 v~v~~ii~~-~~kvLL~~R~~~---~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtGl~v~~~~~~~~--~~~~-----~ 69 (122)
T cd04673 1 VAVGAVVFR-GGRVLLVRRANP---PDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTV--VDVI-----E 69 (122)
T ss_pred CEEEEEEEE-CCEEEEEEECCC---CCCCEEECCEEEEECCCCHHHHHHHHHHHHHCCEEEEEEEEEE--EEEE-----C
T ss_conf 989999998-999999996999---9999799989685789999999999999988976476069999--9102-----0
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCH
Q ss_conf 00011234433799998047543010578888888600376037899763000
Q gi|254780557|r 84 QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVV 136 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~ 136 (160)
.........+++.+.|.+....-.+. ...|+.+++|+++++++++.+
T Consensus 70 -~~~~~~~~~~~~~~~f~~~~~~g~~~-----~~~E~~e~~W~~~del~~l~l 116 (122)
T cd04673 70 -RDAAGRVEFHYVLIDFLCRYLGGEPV-----AGDDALDARWVPLDELAALSL 116 (122)
T ss_pred -CCCCCCEEEEEEEEEEEEEECCCEEE-----CCCCEEEEEEEEHHHCCCCCC
T ss_conf -28999658999999999997399884-----198838889986999147989
No 28
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.87 E-value=8.2e-22 Score=147.42 Aligned_cols=124 Identities=24% Similarity=0.284 Sum_probs=77.3
Q ss_pred EEEEEEE--CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 0699998--48983999992688776668722012115078888889999999998375522222013661241163222
Q gi|254780557|r 5 GVGILIL--NQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHC 82 (160)
Q Consensus 5 ~V~vvi~--n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~ 82 (160)
.|.||++ +.+++|||+||++. ++|+|++|||+||+|||+.+||.||++|||||++............+ .+
T Consensus 3 ~v~vv~~~~~~~~~vLll~Rs~~----~~G~W~~p~G~ve~gE~~~~aA~REi~EETGl~~~~~~~~~~~~~~~----~~ 74 (129)
T cd04664 3 SVLVVPYRLTGEGRVLLLRRSDK----YAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIA----FV 74 (129)
T ss_pred EEEEEEEEECCCCEEEEEECCCC----CCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEE----EE
T ss_conf 89999999889998999987999----98939198732289979999999999998889830179986145899----99
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHCCHHHHHHHH
Q ss_conf 00001123443379999804754301057888888860037603789976300001379999999
Q gi|254780557|r 83 IQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDFKKEAYRQVV 147 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~fk~~vy~~~l 147 (160)
............+|.+... ....+. .+.||++|+|++++|+.+... .+-.++|+
T Consensus 75 ~~~~~~~~~~~~~f~~~v~-~~~~v~-------l~~EH~~~~W~~~~ea~~~l~---~~~~r~a~ 128 (129)
T cd04664 75 EFTDNGRVWTEHPFAFHLP-SDAVVT-------LDWEHDAFEWVPPEEAAALLL---WESNRRAW 128 (129)
T ss_pred EECCCCEEEEEEEEEEECC-CCCCCC-------CCCCCCCEEECCHHHHHHHCC---CHHHHHHH
T ss_conf 9658985899999999867-898776-------874447218836999997659---93366875
No 29
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.87 E-value=9.5e-22 Score=147.07 Aligned_cols=121 Identities=21% Similarity=0.166 Sum_probs=80.8
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 66069999848983999992688776668722012115078888889999999998375522222013661241163222
Q gi|254780557|r 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHC 82 (160)
Q Consensus 3 R~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~ 82 (160)
|+.|+|||+ ++|+|||+||.+.. ..+|.||||+||+|||+.+||+||++||||+++....+... +.+......
T Consensus 1 R~~a~AvI~-~~~~vLL~r~~~~~----~~~w~lPGG~ve~GEt~~~Al~RE~~EEtGl~v~v~~l~~v--~e~~~~~~~ 73 (128)
T cd04687 1 RNSAKAVII-KNDKILLIKHHDDG----GVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFV--REYIGHNPT 73 (128)
T ss_pred CCEEEEEEE-ECCEEEEEEECCCC----CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCEEEE--EEECCCCCC
T ss_conf 947999999-89999999983699----81698988667699799999999887863967885608999--970132556
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHC
Q ss_conf 0000112344337999980475430105788888886003760378997630
Q gi|254780557|r 83 IQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNI 134 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~ 134 (160)
.......+....+|.+...+...... ....+.+..+++|++++||.++
T Consensus 74 ~~~~~~~h~v~~~f~~~~~~g~~~~~----~~~~d~~~~~~~Wv~ldeL~~~ 121 (128)
T cd04687 74 SELPGHFHQVELMFECKIKSGTPAKT----PSKPDPNQIGVEWLKLKELGDI 121 (128)
T ss_pred CCCCCCEEEEEEEEEEEECCCCCCCC----CCCCCCCEEEEEEECHHHHCCC
T ss_conf 67888549999999999868954667----7788766578998049995669
No 30
>pfam00293 NUDIX NUDIX domain.
Probab=99.87 E-value=1.7e-21 Score=145.52 Aligned_cols=121 Identities=31% Similarity=0.479 Sum_probs=85.2
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 56606999984898399999268877666872201211507888888999999999837552222201366124116322
Q gi|254780557|r 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAH 81 (160)
Q Consensus 2 yR~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~ 81 (160)
+|++|+++++|.+++|||+||...+ ...+.|.+|||++|+|||+.+||+||++||||+++....... ...+..+..
T Consensus 1 ~~~~v~vvi~~~~~~vll~~r~~~~--~~~~~w~~PgG~ve~gE~~~~aa~RE~~EE~Gi~~~~~~~~~--~~~~~~~~~ 76 (133)
T pfam00293 1 RRRAVGVVLLNEDGEVLLVRRSRTP--GTPGLWELPGGKVEPGESPEEAAVRELEEETGLRVLLLLLLG--VLEYPAPGR 76 (133)
T ss_pred CCCEEEEEEEECCCEEEEEEEECCC--CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEE--EEEECCCCC
T ss_conf 9988999999489989999927689--999849998455727988999999998897595115789999--998649999
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHC
Q ss_conf 200001123443379999804754301057888888860037603789976300001
Q gi|254780557|r 82 CIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDF 138 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~f 138 (160)
.......+|.+.+.......+. ...|+.+++|++++++.+.+...
T Consensus 77 ------~~~~~~~~~~~~~~~~~~~~~~------~~~E~~~~~w~~~~e~~~~~~~~ 121 (133)
T pfam00293 77 ------DLREHVHVFLAELLGGEPEPQP------DPGEVSEVRWVPLEELLELLLAG 121 (133)
T ss_pred ------CCCEEEEEEEEEEECCCCCCCC------CCCEEEEEEEEEHHHHHHHHHCC
T ss_conf ------9829999999998168644668------97838999999999999887889
No 31
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.86 E-value=2.8e-21 Score=144.29 Aligned_cols=123 Identities=21% Similarity=0.321 Sum_probs=78.7
Q ss_pred CCEEEEEEE---CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCC
Q ss_conf 660699998---48983999992688776668722012115078888889999999998375522222013661241163
Q gi|254780557|r 3 RRGVGILIL---NQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFP 79 (160)
Q Consensus 3 R~~V~vvi~---n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~ 79 (160)
=..+|+|++ |.+-+|||++|. .|.|+||||+||+|||+.+||+||++|||||+...........+.+...
T Consensus 2 e~saG~V~~r~~~~~~~vLLi~~~-------~g~W~~P~G~ie~gEs~~~aA~REv~EEtGl~~~~~~~~~~~~~~~~~~ 74 (130)
T cd03428 2 ERSAGAIIYRRLNNEIEYLLLQAS-------YGHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQ 74 (130)
T ss_pred CEEEEEEEEEECCCCEEEEEEECC-------CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECC
T ss_conf 568899999864994899999918-------9968999050489959999999999998798707878517478999816
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCH-HCCHHHHHHH
Q ss_conf 222000011234433799998047543010578888888600376037899763000-0137999999
Q gi|254780557|r 80 AHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVV-DFKKEAYRQV 146 (160)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~-~fk~~vy~~~ 146 (160)
. ........+|++...+. .++. .+.|+++++|++++++++++. +-.|.+.++|
T Consensus 75 --~----~~~~~~v~~fl~~~~~~-~~~~-------~~~E~~d~~W~~~~eA~~~l~~~~~r~il~~a 128 (130)
T cd03428 75 --V----RGKLKTVTYFLAELRPD-VEVK-------LSEEHQDYRWLPYEEALKLLTYEDLKAVLDKA 128 (130)
T ss_pred --C----CCEEEEEEEEEEEEECC-CCCC-------CCCCEEEEEEECHHHHHHHCCCHHHHHHHHHH
T ss_conf --8----97899999999998178-6789-------98215678998399999883997399999996
No 32
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.86 E-value=1.1e-21 Score=146.64 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=75.2
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220136612411632220
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCI 83 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
+.|++||. .+|||||+||...+ ..|+|.+|||++|.|||+++||+||++||||+++....... .+..|
T Consensus 14 ~~v~~ii~-~~~kILLvrR~~~P---~~g~W~lPGG~vE~gEt~eea~~REv~EEtGl~v~~~~~~~----v~~~p---- 81 (130)
T cd04511 14 IIVGCVPE-WEGKVLLCRRAIEP---RHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYA----VYSVP---- 81 (130)
T ss_pred EEEEEEEE-ECCEEEEEECCCCC---CCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEE----EECCC----
T ss_conf 89999998-69999999406899---99958689748658989999999899874097899626999----94578----
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHH--HCCHHC
Q ss_conf 0001123443379999804754301057888888860037603789976--300001
Q gi|254780557|r 84 QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTP--NIVVDF 138 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~--~~i~~f 138 (160)
..++...+|.+...+.. + ..+.|..+++|++++|++ +.+.|+
T Consensus 82 ----~~~~v~~~f~~~~~~g~--~-------~~~~E~~e~~wf~~delP~~~lAf~s 125 (130)
T cd04511 82 ----HISQVYMFYRARLLDLD--F-------APGPESLEVRLFTEEEIPWDELAFPT 125 (130)
T ss_pred ----CCCEEEEEEEEEEECCC--C-------CCCCCEEEEEEECHHHCCHHHCCHHH
T ss_conf ----77679999999991276--7-------99952016778878899706545165
No 33
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.86 E-value=9.9e-22 Score=146.96 Aligned_cols=104 Identities=25% Similarity=0.305 Sum_probs=70.3
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 69999848983999992688776668722012115078888889999999998375522222013661241163222000
Q gi|254780557|r 6 VGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCIQE 85 (160)
Q Consensus 6 V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~ 85 (160)
|+++|++ +|++||+||+.++ ..++|+|.||||+||+|||+++|++||++||+||++......... .+ .
T Consensus 3 Vagii~~-~~kvLl~rR~~~~-~~~~G~WefPGGkvE~gEt~~~Al~REl~EElgI~v~~~~~~~~~--~~--------~ 70 (117)
T cd04691 3 VVGVLFS-DDKVLLERRSLTK-NADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSL--YH--------P 70 (117)
T ss_pred EEEEEEE-CCEEEEEECCCCC-CCCCCEEECCEECCCCCCCHHHHHHHHHHHHHCEEEECCEEEEEE--EE--------C
T ss_conf 9999998-9999999889999-999996989745177988999999999889819156224589999--85--------5
Q ss_pred CCCCCCCCEEE-EEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHH
Q ss_conf 01123443379-9998047543010578888888600376037899763
Q gi|254780557|r 86 NGYVGQMQKWF-AFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPN 133 (160)
Q Consensus 86 ~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~ 133 (160)
.. ......+| ...+.| ++ ...|+++++|++++|++.
T Consensus 71 ~~-~~~~l~~~~~~~~~G---~~--------~~~E~~e~~Wv~~~el~~ 107 (117)
T cd04691 71 TS-ELQLLHYYVVTFWQG---EI--------PAQEAAEVHWMTANDIVL 107 (117)
T ss_pred CC-CEEEEEEEEEEEECC---EE--------CCCCCCCCEECCHHHCCC
T ss_conf 99-969999999999817---66--------433477057716999538
No 34
>PRK08999 hypothetical protein; Provisional
Probab=99.86 E-value=2.4e-21 Score=144.69 Aligned_cols=121 Identities=23% Similarity=0.293 Sum_probs=79.5
Q ss_pred CCEEEE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 660699-9984898399999268877666872201211507888888999999999837552222201366124116322
Q gi|254780557|r 3 RRGVGI-LILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAH 81 (160)
Q Consensus 3 R~~V~v-vi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~ 81 (160)
+..|+| +|+|.+|+||+++|..+ ..+.|+|+||||+||+|||+.+|+.||++||+||++........ ..+.+++.
T Consensus 4 ~i~V~~gvi~~~~~~vLi~~R~~~--~~~~g~WEFPGGKvE~~Et~~~aL~REl~EElgI~v~~~~~~~~--~~h~Y~~~ 79 (312)
T PRK08999 4 RVHVAAAVIRDADGRILLARRPEG--KHQGGLWEFPGGKVEPGETVEQALARELREELGIEVTAARPLIT--VPHDYPDK 79 (312)
T ss_pred EEEEEEEEEECCCCCEEEEECCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEE--EEEECCCE
T ss_conf 799999999858996999978999--98788464898867999899999999988870927632138899--99964984
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCH-HCCHHHHHH
Q ss_conf 2000011234433799998047543010578888888600376037899763000-013799999
Q gi|254780557|r 82 CIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVV-DFKKEAYRQ 145 (160)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~-~fk~~vy~~ 145 (160)
.. ....|....|.| .....|..+++|++++++.+.-. |-++++.+.
T Consensus 80 ~v-------~L~~~~v~~~~G-----------~~~~~EgQ~~~Wv~~~~l~~~~fp~AN~~Ii~~ 126 (312)
T PRK08999 80 RV-------RLDVREVTAWQG-----------EPHGREGQPLAWVAPDELAVYPFPPANQPIVRA 126 (312)
T ss_pred EE-------EEEEEEEEEECC-----------CCCCCCCCEEEEECHHHCCCCCCCCCCHHHHHH
T ss_conf 99-------999999873077-----------004656875667765335458999998699985
No 35
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=3.7e-21 Score=143.62 Aligned_cols=108 Identities=26% Similarity=0.286 Sum_probs=71.1
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 69999848983999992688776668722012115078888889999999998375522222013661241163222000
Q gi|254780557|r 6 VGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCIQE 85 (160)
Q Consensus 6 V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~ 85 (160)
|+++|+|++|+|||+||.+ .+.|.||||+||+|||+++||.||++||||+++......... .+..+.. ..
T Consensus 3 ~~a~v~~~~grvLl~rr~~------~~~W~lPGG~vE~gEt~~~a~~REl~EE~Gl~v~~~~l~~~~--~~~~~~~--~~ 72 (118)
T cd04690 3 AAALILVRDGRVLLVRKRG------TDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLG--TFRAPAA--NE 72 (118)
T ss_pred EEEEEEECCCEEEEEEECC------CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEECCEEEEEE--EEEECCC--CC
T ss_conf 9999998999899999779------994989963765997999999999989759498602079989--9972166--79
Q ss_pred CCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHC
Q ss_conf 0112344337999980475430105788888886003760378997630
Q gi|254780557|r 86 NGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNI 134 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~ 134 (160)
. ........|.+.+.+.. ....|+++++|++++|+.++
T Consensus 73 ~-~~~~~~~~~~~~~~g~~----------~~~~E~~e~~Wv~~~el~~~ 110 (118)
T cd04690 73 P-GVDVRATVYVAELTGEP----------VPAAEIEEIRWVDYDDPADD 110 (118)
T ss_pred C-CEEEEEEEEEEEEECCC----------CCCCCCCCEEEECHHHCCCC
T ss_conf 9-98999999999981884----------57863100299579897689
No 36
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.85 E-value=7.3e-21 Score=141.89 Aligned_cols=112 Identities=30% Similarity=0.404 Sum_probs=77.0
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220136612411632220
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCI 83 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
++|+++|+|.+++|||+||.+. .+|.|.+|||++|+|||+.+||+||++||||+++....... .+.+..+.
T Consensus 1 ~~~~~ii~~~~~~vLl~~r~~~----~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~--~~~~~~~~--- 71 (123)
T cd02883 1 VAVGAVILDEDGRVLLVRRADS----PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLG--VYEVESPD--- 71 (123)
T ss_pred CEEEEEEEECCCEEEEEEECCC----CCCEEECCCEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEE--EEEEECCC---
T ss_conf 9999999979999999994289----98959998143159989899756678898594567758999--99987778---
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHC
Q ss_conf 000112344337999980475430105788888886003760378997630
Q gi|254780557|r 84 QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNI 134 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~ 134 (160)
........+|.+...+.... .....|+.+++|++++++...
T Consensus 72 ---~~~~~~~~~f~~~~~~~~~~-------~~~~~e~~~~~W~~~~el~~~ 112 (123)
T cd02883 72 ---EGEHAVVFVFLARLVGGEPT-------LLPPDEISEVRWVTLDELPAL 112 (123)
T ss_pred ---CCCEEEEEEEEEEECCCCCC-------CCCCCCEEEEEEEEHHHHHCC
T ss_conf ---99669999999999589521-------289866899999849991349
No 37
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=5.8e-21 Score=142.50 Aligned_cols=102 Identities=28% Similarity=0.364 Sum_probs=70.2
Q ss_pred EEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 99998489839999926887766687220121150788888899999999983755222220136612411632220000
Q gi|254780557|r 7 GILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCIQEN 86 (160)
Q Consensus 7 ~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (160)
|+||+|++|+|||+||. .|.|.||||++|+|||+.+||+||+.||||++........ .+..
T Consensus 3 A~vi~~~~g~vLLvrr~-------~g~W~lPGG~ve~GEt~~~Aa~RE~~EEtGl~~~~~~~~~----~~~~-------- 63 (112)
T cd04667 3 ATVICRRGGRVLLVRKS-------GSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLF----HVDG-------- 63 (112)
T ss_pred EEEEEECCCEEEEEEEC-------CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEE----EEEC--------
T ss_conf 89999709999999918-------9938898748889989999999999998693765469999----9908--------
Q ss_pred CCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHH
Q ss_conf 112344337999980475430105788888886003760378997630000
Q gi|254780557|r 87 GYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVD 137 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~ 137 (160)
.......|.+.... .....++.|+++++||++++++++..+
T Consensus 64 --~~~~~~~f~~~~~~--------~~~~~~~~E~~e~rW~~~del~el~~~ 104 (112)
T cd04667 64 --GSTRHHVFVASVPP--------SAQPKPSNEIADCRWLSLDALGDLNAS 104 (112)
T ss_pred --CCEEEEEEEEEECC--------CCCCCCCCCCEEEEEEEHHHCCCCCCC
T ss_conf --98899999999758--------864189974214799869996368899
No 38
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.84 E-value=9.3e-21 Score=141.28 Aligned_cols=121 Identities=27% Similarity=0.351 Sum_probs=74.4
Q ss_pred EEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 99998489839999926887766687220121150788888899999999983755222220136612411632220000
Q gi|254780557|r 7 GILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCIQEN 86 (160)
Q Consensus 7 ~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (160)
..+++.++|+|||++|... ++.|+|.||||+||+|||+++||+||++||||+++....... ...+..+
T Consensus 4 tl~ii~~~~kiLl~~R~~~---~~~G~W~~PGGkvE~gEt~~~a~~REl~EEtGl~v~~~~~~g--~~~~~~~------- 71 (137)
T cd03427 4 TLCFIKDPDKVLLLNRKKG---PGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVG--IIKFPFP------- 71 (137)
T ss_pred EEEEEEECCEEEEEEECCC---CCCCEEECCEEECCCCCCHHHHHHHHHHHHHCEEEEEEEEEE--EEEEEEC-------
T ss_conf 9999998999999996999---999959795565679979999999999898692887138999--9999927-------
Q ss_pred CCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCH-HCCHHHHHHHH
Q ss_conf 11234433799998047543010578888888600376037899763000-01379999999
Q gi|254780557|r 87 GYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVV-DFKKEAYRQVV 147 (160)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~-~fk~~vy~~~l 147 (160)
.....+....|.+......+. ...+..+++|++++++.++-. |-.+++.+.++
T Consensus 72 ---~~~~~~~~~~f~~~~~~G~~~-----~~~~e~~l~Wv~~~el~~l~~~p~d~~~l~~ll 125 (137)
T cd03427 72 ---GEEERYGVFVFLATEFEGEPL-----KESEEGILDWFDIDDLPLLPMWPGDREWLPLML 125 (137)
T ss_pred ---CCCEEEEEEEEEEEEEEEEEC-----CCCCCCEEEEEEHHHCCCCCCCCCHHHHHHHHH
T ss_conf ---999899999999983524767-----988333689984989775899823689999997
No 39
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=1e-20 Score=141.01 Aligned_cols=112 Identities=23% Similarity=0.243 Sum_probs=76.2
Q ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 06999984898399999268877666872201211507888888999999999837552222201366124116322200
Q gi|254780557|r 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCIQ 84 (160)
Q Consensus 5 ~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
-+++||+|.+|+|||+||.... .++|.||||+||+|||+.+||+||++||||+++....... ..
T Consensus 2 Ra~~ii~~~~~~vLl~~r~~~~----~~~w~~PGG~ve~gEt~~~a~~RE~~EE~g~~v~~~~~~~----~~-------- 65 (121)
T cd04669 2 RASIVIINDQGEILLIRRIKPG----KTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFL----IV-------- 65 (121)
T ss_pred EEEEEEEECCCEEEEEEECCCC----CCEEECCCCEECCCCCHHHHHHHHHHHHCCCEEEEEEEEE----EE--------
T ss_conf 2899999779999999984899----9869899606059999999999998876098899655999----99--------
Q ss_pred CCCCCCCCCEEEEEEECCCCCCEECCCC-CCCCCCCCCEEEECCHHHHHHC
Q ss_conf 0011234433799998047543010578-8888886003760378997630
Q gi|254780557|r 85 ENGYVGQMQKWFAFRFQGLTSEICVDRT-AYGYESEFDAWTWVSLWDTPNI 134 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~E~~~~~Wv~~~el~~~ 134 (160)
.+.+...++|.+.+.+.......... ....+.+.-+.+|+++++|.+.
T Consensus 66 --~~~~~~~~~F~~~i~~g~~~~~~~~e~~~~~~~~~~e~~WvpldeL~~l 114 (121)
T cd04669 66 --NQNGRTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI 114 (121)
T ss_pred --EECCCEEEEEEEEEECCEECCCCCCCCCCCCCCCEEEEEEEEHHHHCCC
T ss_conf --7479806999999981478158784235778887289999779992728
No 40
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1.4e-20 Score=140.31 Aligned_cols=118 Identities=17% Similarity=0.172 Sum_probs=78.0
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 66069999848983999992688776668722012115078888889999999998375522222013661241163222
Q gi|254780557|r 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHC 82 (160)
Q Consensus 3 R~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~ 82 (160)
|..|++||++ +++|||+|+.+ .++|.+|||+||.|||+.+||+||++||||+++.......... ..+
T Consensus 1 rvrv~aii~~-~~~vLl~~~~~------~~~w~lPGG~ve~gEt~~eA~~RE~~EEtGl~v~~~~l~~v~e------~~f 67 (126)
T cd04688 1 KVRAAAIIIH-NGKLLVQKNPD------ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVE------NIF 67 (126)
T ss_pred CEEEEEEEEE-CCEEEEEEECC------CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEE------EEE
T ss_conf 9799999998-99999999779------9989998534369989999998888887596788246999997------688
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHC
Q ss_conf 0000112344337999980475430105788888886003760378997630
Q gi|254780557|r 83 IQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNI 134 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~ 134 (160)
.......+....+|.+.+.+..... .+......+.+..+++|++++++.+.
T Consensus 68 ~~~~~~~h~i~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~Wv~ldeL~~l 118 (126)
T cd04688 68 TYNGKPGHEIEFYYLVTLLDESLYQ-QDIEILEEEGEKIVFRWIPIDELKEI 118 (126)
T ss_pred ECCCCCCEEEEEEEEEEECCCCCCC-CCCCCCCCCCCEEEEEECCHHHHCCC
T ss_conf 7299754799999999997885577-87643277987999998479992768
No 41
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.83 E-value=8.3e-20 Score=135.76 Aligned_cols=129 Identities=18% Similarity=0.230 Sum_probs=79.9
Q ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 06999984898399999268877666872201211507888888999999999837552222201366124116322200
Q gi|254780557|r 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCIQ 84 (160)
Q Consensus 5 ~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
.|++||. .+|++||++|.... .+.|.+|||++|+|||+.+||+||++||||+++....+.. .+.+..+..
T Consensus 2 tVaavv~-~~gr~LLV~~~~~~----~~~~~~PgG~~e~gE~~~~a~~RE~~EEtG~~v~~~~~~g--~~~~~~~~~--- 71 (134)
T cd03675 2 TVAAVVE-RDGRFLLVEEETDG----GLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLG--IYQWTAPDS--- 71 (134)
T ss_pred EEEEEEE-ECCEEEEEEEECCC----CCEEECCCEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEE--EEEEECCCC---
T ss_conf 8999999-79999999996599----9729898227889989999999999997577677617999--998755899---
Q ss_pred CCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHCCHHHHHHHHHHHHHHHHC
Q ss_conf 001123443379999804754301057888888860037603789976300001379999999999998605
Q gi|254780557|r 85 ENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDFKKEAYRQVVADFAYLIKS 156 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~fk~~vy~~~l~~l~~~i~~ 156 (160)
...+..+-|.+...+ ..+....+.|..+++|++++|+..+.....-+.. ++-+.+++..
T Consensus 72 -------~~~ylr~~F~~~~~~---~~~~~~~D~eI~~a~W~tldEi~~~~~~lRsPlV---~~~i~Dyl~G 130 (134)
T cd03675 72 -------DTTYLRFAFAAELLE---HLPDQPLDSGIVRAHWLTLEEILALAARLRSPLV---LRCIEDYLAG 130 (134)
T ss_pred -------CCEEEEEEEEEEECC---CCCCCCCCCCCEEEEECCHHHHHHHHHCCCCHHH---HHHHHHHHCC
T ss_conf -------961899999999778---9988899986024172789998652541168849---9999999736
No 42
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=5.2e-20 Score=136.92 Aligned_cols=112 Identities=25% Similarity=0.353 Sum_probs=78.8
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 6069999848983999992688776668722012-115078888889999999998375522222013661241163222
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMP-QGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHC 82 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~P-gG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~ 82 (160)
++|.|+|+|.+|++||.||+..+ ..++|+|++. ||+|++|||+.+||.||+.||+||+........ .+.+...
T Consensus 1 Ra~~v~i~n~~G~iLlqkRs~~K-~~~Pg~wd~s~~Ghv~~GE~~~~aa~REl~EElGI~~~~l~~~~--~~~~~~~--- 74 (126)
T cd04697 1 RATYIFVFNSEGKLCVHKRTLTK-DWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLG--LFYYDTD--- 74 (126)
T ss_pred CEEEEEEECCCCCEEEEEECCCC-CCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE--EEEECCC---
T ss_conf 97999999299979999857999-87996134576876779989999999999998689866756758--9998789---
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCC
Q ss_conf 00001123443379999804754301057888888860037603789976300
Q gi|254780557|r 83 IQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIV 135 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i 135 (160)
........|..... .+...+..|+++++|++++|+.+.+
T Consensus 75 -----~~~~~~~vf~~~~d---------~~l~~~~eEV~~~~w~~~~El~~~~ 113 (126)
T cd04697 75 -----GNRVWGKVFSCVYD---------GPLKLQEEEVEEITWLSINEILQFK 113 (126)
T ss_pred -----CCCEEEEEEEEEEC---------CCCCCCHHHHHEEEECCHHHHHHHH
T ss_conf -----88489999999999---------9995996773117980399999898
No 43
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1e-19 Score=135.23 Aligned_cols=123 Identities=24% Similarity=0.268 Sum_probs=82.0
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220136612411632220
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCI 83 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
+.+.|+|+|.+|+|||+||++.+ ...+++|.+|||++|+||++.+||.||+.|||||++..... ..+.... .+.
T Consensus 1 ~aarvvl~d~~grvLL~r~~~~~-~~~~~~W~~pgG~~~~gE~~~~a~~RE~~EE~G~~~~~~~~--~v~~r~~---~f~ 74 (133)
T cd04685 1 RAARVVLLDPDDRVLLLRGDDPD-SPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGP--PVWRRDA---AFT 74 (133)
T ss_pred CEEEEEEECCCCCEEEEEECCCC-CCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEECCCCC--CEEEEEE---EEE
T ss_conf 91799998699999999744789-99999185998748898698999999999875978002446--3799967---870
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHC
Q ss_conf 000112344337999980475430105788888886003760378997630
Q gi|254780557|r 84 QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNI 134 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~ 134 (160)
.......+...+|++...... +....-...+...+.++||++++||.+.
T Consensus 75 ~~g~~~~~~E~fflvr~~~~e--~~~~~~t~~E~~~i~e~RWws~~EL~~t 123 (133)
T cd04685 75 FLGVDGRQEERFFLARTPRTE--PSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred CCCCCCCCEEEEEEEEECCCE--ECCCCCCHHHHHHCCCCCCCCHHHHHHC
T ss_conf 378710006899999946860--3576676666401025525889999327
No 44
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=1.3e-19 Score=134.54 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=75.1
Q ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 069999848983999992688776668722012-1150788888899999999983755222220136612411632220
Q gi|254780557|r 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMP-QGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCI 83 (160)
Q Consensus 5 ~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~P-gG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
-|.|+|+|.+|++||.||+.++ ..++|+|++| ||+++.||+. +||.||++||+|+++....... ...+....
T Consensus 2 vv~v~v~n~~g~iLlqkRs~~K-~~~Pg~W~~~~gg~v~~gE~~-eaa~RE~~EElGi~l~~~~~~~--~~~~~~~~--- 74 (127)
T cd04693 2 VVHVCIFNSKGELLLQKRSPNK-DGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRP--LFRYFFEA--- 74 (127)
T ss_pred EEEEEEECCCCCEEEEECCCCC-CCCCCCEECCCCCCCCCCCCH-HHHHHHHHHHHCCCCCCCCCEE--EEEEECCC---
T ss_conf 8999999399989999668998-899972767887551289859-9999999997177017666478--89999269---
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCC
Q ss_conf 0001123443379999804754301057888888860037603789976300
Q gi|254780557|r 84 QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIV 135 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i 135 (160)
.. ...++++....... ....+..|+++++|++++|+.+++
T Consensus 75 --~~----~~~~~~~~~~~~~~------~~~~~~~EV~d~~Wvs~eEl~~~~ 114 (127)
T cd04693 75 --EG----FDDYYLFYADVEIG------KLILQKEEVDEVKFVSKDEIDGLI 114 (127)
T ss_pred --CC----EEEEEEEEEEEECC------CCCCCHHHEEEEEEECHHHHHHHH
T ss_conf --92----58999999703789------872893782468996799999998
No 45
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=4.6e-19 Score=131.41 Aligned_cols=123 Identities=17% Similarity=0.259 Sum_probs=84.1
Q ss_pred CCCEEEEEEECCC---CCEEEEEECCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEC
Q ss_conf 5660699998489---83999992688776668722012-1150788888899999999983755222220136612411
Q gi|254780557|r 2 YRRGVGILILNQD---DLVWVGRRCFHDNNKHLSLWQMP-QGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYD 77 (160)
Q Consensus 2 yR~~V~vvi~n~~---~~iLl~kR~~~~~~~~~g~W~~P-gG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~ 77 (160)
|.+.|.+.|+|++ |+|||.||+..+ ..++|+|+.. ||+++.|||+.+||+||+.||+||++....+.....+.+.
T Consensus 1 ~Hra~h~~v~~~~~~~g~illqkRs~~K-~~~Pg~wd~s~~Ghv~~gEt~~~aa~REl~EElGl~~~~~~l~~lg~~~~~ 79 (144)
T cd04692 1 WHRTFHCWIITKDEGKGYVLLQKRSANK-KTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIE 79 (144)
T ss_pred CCEEEEEEEEECCCCCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHCEEEEEEEEE
T ss_conf 9338999999667995289999788998-789983116657504579998999998999986887676881882189999
Q ss_pred CCCCCCCCCCCCCCC-CEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCC
Q ss_conf 632220000112344-3379999804754301057888888860037603789976300
Q gi|254780557|r 78 FPAHCIQENGYVGQM-QKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIV 135 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i 135 (160)
.. .......+. ...|++........+ ..+..|+++++|++++|+.+++
T Consensus 80 ~~----~~~~~~d~e~~~vy~~~~~~~~~~~------~~~~~EV~~~~wv~~~el~~~~ 128 (144)
T cd04692 80 YD----HIGKLIDREFHHVYLYELKVPLEEF------TLQKEEVAGVVLIPLDEFAELL 128 (144)
T ss_pred EE----CCCCCEEEEEEEEEEEEECCCCCCC------CCCHHHHHEEEEECHHHHHHHH
T ss_conf 74----4998172089999999968984567------8997881059998799999998
No 46
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.79 E-value=7.9e-19 Score=130.05 Aligned_cols=120 Identities=20% Similarity=0.244 Sum_probs=76.4
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220136612411632220
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCI 83 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
..|+++|+ .+|+|||+||.+. +.|.+|||+|++|||+++|+.||++||||+++............ +.
T Consensus 2 vra~aii~-~~~~vLl~~~~~~------~~~~lPGG~ve~gE~~~~a~~RE~~EE~G~~v~~~~~l~~~e~~------~~ 68 (125)
T cd04689 2 LRARAIVR-AGNKVLLARVIGQ------PHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQ------WH 68 (125)
T ss_pred EEEEEEEE-ECCEEEEEEECCC------CCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEECEEEEEEEEE------EE
T ss_conf 69999999-8999999998899------95899979856998999999999999879978946599999746------77
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHCCHHHHHHHHHHH
Q ss_conf 0001123443379999804754301057888888860037603789976300001379999999999
Q gi|254780557|r 84 QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDFKKEAYRQVVADF 150 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~fk~~vy~~~l~~l 150 (160)
......+....+|.+.......+ .....+.+..+++|++++|+. .|...++++
T Consensus 69 ~~~~~~H~i~~~f~~~~~~~~~~-----~~~~~d~d~~~~~WvpL~eL~---------lyP~~l~d~ 121 (125)
T cd04689 69 EKGVRTHEINHIFAVESSWLASD-----GPPQADEDHLSFSWVPVSDLS---------LYPALLRDL 121 (125)
T ss_pred CCCCCEEEEEEEEEEECCCCCCC-----CCCCCCCCEEEEEEECHHHHH---------HCCHHHHHH
T ss_conf 59965189999999952554556-----898888866789997189953---------487758888
No 47
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.78 E-value=9.6e-19 Score=129.55 Aligned_cols=109 Identities=28% Similarity=0.375 Sum_probs=74.5
Q ss_pred CEEEEEEECCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 60699998489-83999992688776668722012115078888889999999998375522222013661241163222
Q gi|254780557|r 4 RGVGILILNQD-DLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHC 82 (160)
Q Consensus 4 ~~V~vvi~n~~-~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~ 82 (160)
|..||+|+|++ +++||+|+.. .+.|+||||+++.||++.+||+||++||||+++....... .+
T Consensus 2 Pv~GaIiln~~~~kvLLVk~~~------~~~W~fPkGki~~~E~~~~~AiREv~EEtG~Dv~~~i~~~----------~~ 65 (145)
T cd03672 2 PVYGAIILNEDLDKVLLVKGWK------SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKD----------DY 65 (145)
T ss_pred CEEEEEEEECCCCEEEEEEECC------CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCC----------EE
T ss_conf 7259999918999899999438------9958599641689979899998887773275754215846----------06
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHC
Q ss_conf 0000112344337999980475430105788888886003760378997630
Q gi|254780557|r 83 IQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNI 134 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~ 134 (160)
.. ....+|....|.+.-......+. ....-|.++.+|+++++|+..
T Consensus 66 Ie-~~~~~q~~rlyiv~gVp~dt~F~-----p~TRkEI~~I~W~~i~~Lp~~ 111 (145)
T cd03672 66 IE-LIIRGQNVKLYIVPGVPEDTPFE-----PKTRKEISKIEWFDIKDLPTK 111 (145)
T ss_pred EE-EEECCEEEEEEEECCCCCCCCCC-----CCCCCCEEEEEEEEHHHHHHH
T ss_conf 99-99789089999982888887517-----887232765788898884444
No 48
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.77 E-value=3.9e-18 Score=126.03 Aligned_cols=120 Identities=26% Similarity=0.348 Sum_probs=81.1
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCC
Q ss_conf 956606999984898399999268877666872201-2115078888889999999998375522222013661241163
Q gi|254780557|r 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQM-PQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFP 79 (160)
Q Consensus 1 ~yR~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~-PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~ 79 (160)
|+.++|.++|+|.+|++||.||+..+ ..++|.|.. -+|++.+||++.+||.||+.||+||+........ ..+.|...
T Consensus 28 l~Hrav~v~v~n~~g~lllqkRs~~K-~~~Pg~wd~s~~Gh~~~GE~~~~aa~Rel~EElGi~~~~~~~~~-~~~~y~~~ 105 (165)
T cd02885 28 LLHRAFSVFLFNSKGRLLLQRRALSK-YTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVL-PRFRYRAP 105 (165)
T ss_pred CEEEEEEEEEECCCCCEEEEEECCCC-CCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEE-EEEEEECC
T ss_conf 34899999999089979999857988-68997073554346769975899999988886199854320466-68999322
Q ss_pred CCCCCCCCCCCC-CCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCC
Q ss_conf 222000011234-43379999804754301057888888860037603789976300
Q gi|254780557|r 80 AHCIQENGYVGQ-MQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIV 135 (160)
Q Consensus 80 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i 135 (160)
.. ....-. ....|.+...+ ++ ..+..|+++++|++++++.+.+
T Consensus 106 ~~----~~~~e~E~~~vy~~~~d~---~~------~~~~~EV~~~~w~~~~el~~~i 149 (165)
T cd02885 106 DD----GGLVEHEIDHVFFARADV---TL------IPNPDEVSEYRWVSLEDLKELV 149 (165)
T ss_pred CC----CCCCCEEEEEEEEEEECC---CC------CCCHHHHEEEEEECHHHHHHHH
T ss_conf 48----987423799999996589---87------6995792388997899999999
No 49
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.76 E-value=5.5e-18 Score=125.16 Aligned_cols=114 Identities=25% Similarity=0.303 Sum_probs=72.3
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220136612411632220
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCI 83 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
+.|++++.. +++|||+||.+.+ +.|+|.+|||+||.|||+++||.||++||||+++...... ..+..+..-
T Consensus 11 ~~v~~~i~~-~~~iLLvrR~~~p---~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~----~v~~~~~rd- 81 (145)
T COG1051 11 VAVGALIVR-NGRILLVRRANEP---GAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELL----AVFDDPGRD- 81 (145)
T ss_pred EEEEEEEEC-CCEEEEEEECCCC---CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE----EEECCCCCC-
T ss_conf 057899942-8859999866888---8986818866278998889999999999878865430688----885488878-
Q ss_pred CCCCCCCCCCEEEEEEECCCC-CCEECCCCCCCCCCCCCEEEECCHHHHHHCCHH
Q ss_conf 000112344337999980475-430105788888886003760378997630000
Q gi|254780557|r 84 QENGYVGQMQKWFAFRFQGLT-SEICVDRTAYGYESEFDAWTWVSLWDTPNIVVD 137 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~ 137 (160)
. ..+++..+.+.... .+ .......+..++.|+++++++....+
T Consensus 82 --~----r~~~v~~~~~~~~~~g~-----~~~~~~~d~~~~~~~~~~~l~~~~~~ 125 (145)
T COG1051 82 --P----RGHHVSFLFFAAEPEGE-----LLAGDGDDAAEVGWFPLDELPELPLP 125 (145)
T ss_pred --C----CEEEEEEEEEEECCCCC-----CCCCCHHHHHHCCEECHHHCCCCCCC
T ss_conf --8----52699999999714786-----66677264762752645455454443
No 50
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.75 E-value=1.2e-18 Score=129.00 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=82.9
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220136612411632220
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCI 83 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
|||-++|.|.++++||+|+...+ .|.|.+|+|+||+|||+++|+.||++||||+++....... ..+..+
T Consensus 1 P~Vi~~V~~~~~~iLL~r~~~~~----~g~~~~~aG~ve~GEs~e~a~~REv~EE~gv~v~~i~y~~------sqpwpf- 69 (131)
T cd03429 1 PAVIVLVIDGGDRILLARQPRFP----PGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVG------SQPWPF- 69 (131)
T ss_pred CEEEEEEEECCCEEEEECCCCCC----CCCEECCEEEECCCCCHHHCEEEEEEEEECCEECCEEEEE------ECCCCC-
T ss_conf 97999999489889997056799----9959466266439999799118989987177022169988------758799-
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHC-----CHHCCHHHHHHHHHHH
Q ss_conf 000112344337999980475430105788888886003760378997630-----0001379999999999
Q gi|254780557|r 84 QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNI-----VVDFKKEAYRQVVADF 150 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~-----i~~fk~~vy~~~l~~l 150 (160)
-+.....|.+...+ .++.+ .+.|..+++|++.+|+.+. .+|.+-.+-++.++.+
T Consensus 70 -----p~~Lm~~f~a~~~~--~e~~~------~~~Ei~earWfs~del~~~~~~~~~~p~~~sIA~~li~~w 128 (131)
T cd03429 70 -----PSSLMLGFTAEADS--GEIVV------DDDELEDARWFSRDEVRAAGEGLPELPPPGSIARQLIEAW 128 (131)
T ss_pred -----CCEEEEEEEEEECC--CCCCC------CHHHEEEEEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf -----88689999999769--97669------9316216776769998663328877899210999999998
No 51
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.72 E-value=4.3e-17 Score=119.94 Aligned_cols=116 Identities=28% Similarity=0.399 Sum_probs=72.5
Q ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC--CCCEEECCCCCC
Q ss_conf 069999848983999992688776668722012115078888889999999998375522222013--661241163222
Q gi|254780557|r 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQG--DSYIQYDFPAHC 82 (160)
Q Consensus 5 ~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~--~~~~~~~~~~~~ 82 (160)
.|.+||. .+|+|||++|... ++.|.|.+|||.|+.|||+.+||+|||.|||||+.....+.. .....+..|..-
T Consensus 204 T~DaVVv-~~ghVLLIrR~~~---P~kG~WALPGGfv~~~Etl~~aa~REL~EETgl~~~~~~l~~~l~~~~vfd~P~Rd 279 (340)
T PRK05379 204 TVDAVVV-QSGHVLLVRRRAE---PGKGLWALPGGFVGQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPGRS 279 (340)
T ss_pred EEEEEEE-ECCEEEEEEECCC---CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCC
T ss_conf 5316999-8898999941899---98888758988699999989999998864126887620322001243247899999
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHC
Q ss_conf 0000112344337999980475430105788888886003760378997630
Q gi|254780557|r 83 IQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNI 134 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~ 134 (160)
.+. ....+-|++.+.... .+.......-.+.+|+++.++..+
T Consensus 280 pRG----rvvt~a~~~~l~~~~------lp~v~agDDA~~A~W~pl~el~~~ 321 (340)
T PRK05379 280 LRG----RTITHAFLFEFPAGE------LPAVKGGDDADKARWVPLAELAAM 321 (340)
T ss_pred CCC----CEEEEEEEEEECCCC------CCCCCCCCCHHHCEEEEHHHHHHC
T ss_conf 987----789999999726776------678789985565776539996547
No 52
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=6.1e-17 Score=119.07 Aligned_cols=114 Identities=17% Similarity=0.245 Sum_probs=69.3
Q ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 06999984898399999268877666872201211507888888999999999837552222201366124116322200
Q gi|254780557|r 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCIQ 84 (160)
Q Consensus 5 ~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
.|++||++ +++|||+++.. .+.|.||||+||+|||+.+|++||++||||+........+ ..+.. ...+...
T Consensus 2 avraIi~~-~~kiLL~~~~~------~~~~~lPGG~ve~gE~~~~al~RE~~EETG~~~i~~~~~~-G~~~E-~r~~~~~ 72 (131)
T cd04686 2 AVRAIILQ-GDKILLLYTKR------YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKF-GTYTE-RRPWRKP 72 (131)
T ss_pred CEEEEEEE-CCEEEEEEECC------CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCE-EEEEE-EEEEECC
T ss_conf 48999998-99999999769------9967678773789989899999999987496101313114-55999-8410058
Q ss_pred CCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCC---EEEECCHHHHHH
Q ss_conf 0011234433799998047543010578888888600---376037899763
Q gi|254780557|r 85 ENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFD---AWTWVSLWDTPN 133 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~---~~~Wv~~~el~~ 133 (160)
..........+|.|..........+ +..|.. ...|++++|+++
T Consensus 73 ~~~~~~m~s~~Y~C~v~~~~g~~~l------e~~E~~~G~~pvWv~i~eAi~ 118 (131)
T cd04686 73 DADIFHMISYYYLCEVDAELGAQQL------EDYEAELGMKPIWINIHEAIE 118 (131)
T ss_pred CCCEEEEEEEEEEEEECHHCCCCCC------CCHHHHCCCCEEECCHHHHHH
T ss_conf 8877989878999985122189877------603442697217678999999
No 53
>TIGR00586 mutt mutator mutT protein; InterPro: IPR003561 MutT is a small bacterial protein (~12-15kDa) involved in the GO system responsible for removing an oxidatively damaged form of guanine (8-hydroxy- guanine or 7,8-dihydro-8-oxoguanine) from DNA and the nucleotide pool. 8-oxo-dGTP is inserted opposite dA and dC residues of template DNA with near equal efficiency, leading to A.T to G.C transversions. MutT specifically degrades 8-oxo-dGTP to the monophosphate, with the concomitant release of pyrophosphate. A short conserved N-terminal region of mutT (designated the MutT domain) is also found in a variety of other prokaryotic, viral, and eukaryotic proteins , , , . Recently, the generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family . The solution structure of the MutT enzyme has been solved by NMR . The structure is globular and compact, and contains a five-stranded mixed beta-sheet. The parallel portion of the sheet is sandwiched between two alpha-helices, forming an alpha+beta fold. ; GO: 0008413 8-oxo-78-dihydroguanine triphosphatase activity, 0006281 DNA repair.
Probab=99.70 E-value=8.5e-18 Score=124.04 Aligned_cols=71 Identities=27% Similarity=0.401 Sum_probs=56.4
Q ss_pred EEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 999848983999992688776668722012115078888889999999998375522222013661241163222
Q gi|254780557|r 8 ILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHC 82 (160)
Q Consensus 8 vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~ 82 (160)
+||.|++|+|||.||... ..+.+.|.||||+||.||||++|+.|||.||+||++....+ -....|.+|...
T Consensus 10 giIrNe~gei~itrR~~g--~~~a~~lEFPGGK~e~GETpeqa~vREl~EEigI~~~~~~l--~e~l~~eyP~~~ 80 (150)
T TIGR00586 10 GIIRNENGEIFITRRAAG--AHFANKLEFPGGKIEMGETPEQAVVRELQEEIGITPQHFEL--FEKLEYEYPQKR 80 (150)
T ss_pred EEEECCCCCEEEEECCCC--CCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCHH--EEEECCCCCCEE
T ss_conf 899818880788744456--21000247989813889897897765422200123200000--001013067400
No 54
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.68 E-value=4.6e-16 Score=113.95 Aligned_cols=119 Identities=23% Similarity=0.259 Sum_probs=79.4
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCC
Q ss_conf 56606999984898399999268877666872201-21150788888899999999983755222220136612411632
Q gi|254780557|r 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQM-PQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPA 80 (160)
Q Consensus 2 yR~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~-PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~ 80 (160)
..+.+.++|+|.+|++||.||+..+ ..++|.|.. -+|++.+||++.+||.||+.||+||.+...... ...+.|....
T Consensus 33 lHRafsv~l~~~~g~lllq~Rs~~K-~~~pg~w~~s~~gH~~~gE~~~~aa~R~l~EElGi~~~~l~~~-~~~f~Y~a~~ 110 (184)
T PRK03759 33 LHLAFSCYLFDADGRLLVTRRALSK-KTWPGVWTNSCCGHPQPGESLEDAIIRRCREELGVEITDLTLV-LPDFRYRATD 110 (184)
T ss_pred EEEEEEEEEECCCCCEEEEECCCCC-CCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEE-EEEEEEECCC
T ss_conf 3889999999599969999715897-3799940035446789998999999999999869883444055-0038997238
Q ss_pred CCCCCCCCCCCC-CEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCC
Q ss_conf 220000112344-3379999804754301057888888860037603789976300
Q gi|254780557|r 81 HCIQENGYVGQM-QKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIV 135 (160)
Q Consensus 81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i 135 (160)
. ....-.. ...|.....+ .+ .....|+++++|++++++...+
T Consensus 111 ~----~g~~E~E~~~Vf~~~~d~---~~------~pnp~EV~e~~Wv~~~eL~~~i 153 (184)
T PRK03759 111 P----NGIVENEVCPVFAARATS---AL------QPNPDEVMDYQWVDPADLLRAV 153 (184)
T ss_pred C----CCCCEEEEEEEEEEEECC---CC------CCCHHHHEEEEEECHHHHHHHH
T ss_conf 9----986225799999998489---89------8996891346898699999999
No 55
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=9.4e-16 Score=112.15 Aligned_cols=107 Identities=23% Similarity=0.132 Sum_probs=67.5
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220136612411632220
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCI 83 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
+.|++++. .+++|||+||...+ ..|.|.+|||.+|.|||+++||.||++||||+++....... +. ..
T Consensus 5 ~vv~~~~~-~~d~vLl~rR~~~P---~~G~w~lPgGf~e~gEt~~~aa~RE~~EEtgl~v~~~~~~L-----f~----v~ 71 (118)
T cd04674 5 PVVVALLP-VDDGLLVIRRGIEP---GRGKLALPGGFIELGETWQDAVARELLEETGVAVDPADIRL-----FD----VR 71 (118)
T ss_pred CEEEEEEE-ECCEEEEEEECCCC---CCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEE-----EE----CC
T ss_conf 48999999-79999999859998---88858487537549999999999999997685116140179-----87----15
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHH
Q ss_conf 00011234433799998047543010578888888600376037899
Q gi|254780557|r 84 QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWD 130 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~e 130 (160)
. ..+.. .+.+.+.+.... .+.++-.+..|..++++++..+
T Consensus 72 s----~p~~~-~~~~~~l~~~~~--~dlp~f~pt~Es~e~~l~~~p~ 111 (118)
T cd04674 72 S----APDGT-LLVFGLLPERRA--ADLPPFEPTDETTERAVVTAPS 111 (118)
T ss_pred C----CCCEE-EEEEEEEHHHCC--CCCCCCCCCCCEEEEEEECCCC
T ss_conf 4----68437-999998310012--4368989883303369516744
No 56
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.63 E-value=4.8e-15 Score=108.04 Aligned_cols=118 Identities=27% Similarity=0.243 Sum_probs=77.8
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220136612411632220
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCI 83 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~ 83 (160)
-+|+++-++++++|+|++.-.++- ..-.|.||+|.+|+||||.+||.||++||||++......... +.
T Consensus 3 daV~il~~~~~~~i~lv~QyR~~~--~~~~~E~PaG~id~gE~~~~aA~REL~EETG~~~~~~~~l~~----------~~ 70 (137)
T cd03424 3 DAVAVLPYDDDGKVVLVRQYRPPV--GGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGS----------FY 70 (137)
T ss_pred CEEEEEEECCCCEEEEEEEEECCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCC----------CC
T ss_conf 989999986999899998144289--983898155468899799999999974120651386789336----------25
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHCC
Q ss_conf 00011234433799998047543010578888888600376037899763000013
Q gi|254780557|r 84 QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDFK 139 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~fk 139 (160)
.......+....|++.-.....+ ....+.|+.+..|++++++.+++..-+
T Consensus 71 ~~pg~~~~~~~~~~a~~~~~~~~------~~~d~~E~i~v~~~~~~e~~~~i~~g~ 120 (137)
T cd03424 71 PSPGFSDERIHLFLAEDLSPGEE------GLLDEGEDIEVVLVPLDEALELLADGE 120 (137)
T ss_pred CCCCCCCCEEEEEEEEECCCCCC------CCCCCCCCEEEEEECHHHHHHHHHCCC
T ss_conf 88823371799999994404556------788877526899966999999998299
No 57
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.61 E-value=3.3e-15 Score=109.00 Aligned_cols=113 Identities=22% Similarity=0.231 Sum_probs=75.2
Q ss_pred CEEEEEEECCCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCC
Q ss_conf 606999984898--39999926887766687220121150788-888899999999983755222220136612411632
Q gi|254780557|r 4 RGVGILILNQDD--LVWVGRRCFHDNNKHLSLWQMPQGGINPQ-EDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPA 80 (160)
Q Consensus 4 ~~V~vvi~n~~~--~iLl~kR~~~~~~~~~g~W~~PgG~ve~g-Et~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~ 80 (160)
-.|.++++..++ .||++||+.+.+ .++|.+.||||++|++ ||+.+||+||+.||+|+......... ..+.
T Consensus 3 AaVli~l~~~~~~~~ill~kRs~~l~-~h~GqisfPGG~~e~~D~~~~~tAlREt~EEiGl~~~~~~~lg------~L~~ 75 (157)
T cd03426 3 AAVLVLLVEREGELRVLLTKRASHLR-SHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLG------RLPP 75 (157)
T ss_pred CEEEEEEEECCCCEEEEEEEECCCCC-CCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEE------ECCC
T ss_conf 38999999879967999998267667-7898483799602766533899999999998689911338986------3487
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHC
Q ss_conf 220000112344337999980475430105788888886003760378997630
Q gi|254780557|r 81 HCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNI 134 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~ 134 (160)
.... .+....-|.+...+ ..++.+ ...|.+++-|++++++.+.
T Consensus 76 ~~t~----s~~~V~PfV~~~~~-~~~~~~------~~~EV~~vf~vPL~~ll~~ 118 (157)
T cd03426 76 YYTR----SGFVVTPVVGLVPP-PLPLVL------NPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred CCCC----CCCEEEEEEEEECC-CCCCCC------CHHHHHHHHHCCHHHHHCC
T ss_conf 1325----98489999999479-876579------8489788814059997397
No 58
>PRK11762 nudE ADP-ribose diphosphatase NudE; Provisional
Probab=99.56 E-value=3.1e-14 Score=103.28 Aligned_cols=114 Identities=23% Similarity=0.188 Sum_probs=72.7
Q ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 06999984898399999268877666872201211507888888999999999837552222201366124116322200
Q gi|254780557|r 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCIQ 84 (160)
Q Consensus 5 ~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~~ 84 (160)
.|+|+-++.+++|+|++.=-+... .-.|.+|+|++|+||+|.+||.|||.||||+......... .++.
T Consensus 49 aV~Ivpi~~~~~vvLVrQyR~~~~--~~~lEiPaG~id~gE~p~~aA~REL~EETGy~a~~~~~l~----------~~~~ 116 (185)
T PRK11762 49 AVMIVPILDDDTLLLIREYAAGTE--SYELGFPKGLIDPGETPEEAANRELKEEVGFGARQLTFLK----------ELSL 116 (185)
T ss_pred EEEEEEECCCCEEEEEECCCCCCC--CEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEE----------EEEC
T ss_conf 899999759997999993368888--8799824305899969899999998897697747689975----------9983
Q ss_pred CCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHH
Q ss_conf 00112344337999980475430105788888886003760378997630000
Q gi|254780557|r 85 ENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVD 137 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~ 137 (160)
...+.......|++. + +.. ......+.|+.++.+++++|+.+++..
T Consensus 117 spg~~~e~~~~flA~--~----l~~-~~~~~De~E~iev~~~~~~e~~~mi~~ 162 (185)
T PRK11762 117 APSYFSSKMNIVLAQ--D----LYP-ERLEGDEPEPLEVVRWPLADLDELLAR 162 (185)
T ss_pred CCCCCCCEEEEEEEC--C----CCC-CCCCCCCCCCEEEEEECHHHHHHHHHC
T ss_conf 773115329999985--8----605-667999984149999769999999985
No 59
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.51 E-value=4.5e-13 Score=96.55 Aligned_cols=113 Identities=23% Similarity=0.334 Sum_probs=64.7
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 83999992688776668722012115078888889-99999999837552222201366124116322200001123443
Q gi|254780557|r 15 DLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLD-AAYRELYEETGIKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQ 93 (160)
Q Consensus 15 ~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~-Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (160)
+++|+.+|.... +.|.||||+||.||++.+ ||+||++||||+++....... ....+..............
T Consensus 24 ~~vl~~~~~~~~-----~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 94 (161)
T COG0494 24 GEVLLAQRRDDG-----GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLEL----LGEFPPSPGDGSSVGGREH 94 (161)
T ss_pred CEEEEEEEECCC-----CEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEE----EEEEECCCCCCCCCCCEEE
T ss_conf 799999984799-----9599088855899987899999999998788131520289----9999666543321121579
Q ss_pred EEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHH
Q ss_conf 37999980475430105788888886003760378997630000
Q gi|254780557|r 94 KWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVD 137 (160)
Q Consensus 94 ~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~ 137 (160)
..+................... ..|+.++.|++++++......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~ 137 (161)
T COG0494 95 RVFFVAEVDDSLAVAIEGLSAP-SEELEDLEWVPLDELAALVLA 137 (161)
T ss_pred EEEEEEECCCCCCCCCCCCCCC-CCCCCEEEEECHHHHHHHHCC
T ss_conf 9999996134434333466665-421010476566786655302
No 60
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.50 E-value=1.6e-13 Score=99.10 Aligned_cols=111 Identities=20% Similarity=0.240 Sum_probs=67.3
Q ss_pred EEEEEECCC-C--CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 699998489-8--3999992688776668722012115078888889999999998375522222013661241163222
Q gi|254780557|r 6 VGILILNQD-D--LVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHC 82 (160)
Q Consensus 6 V~vvi~n~~-~--~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~ 82 (160)
||++.++.+ | +|||+.+.++ |.|.||+|++|+|||+.+||+||++||+|+....... ....+.|..+
T Consensus 3 agal~~r~~~g~~eVLLItsr~~------~rWilPKG~~e~~es~~~aA~REa~EEAGv~g~i~~~-~lG~~~y~k~--- 72 (122)
T cd04666 3 AGAIPYRETGGEVEVLLVTSRRT------GRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKR-PLGRFEYRKR--- 72 (122)
T ss_pred EEEEEEEECCCCEEEEEEEECCC------CEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCC-CCEEEEEEEC---
T ss_conf 99999997399089999992699------9499887536799899999888888742948888675-8889999982---
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCC
Q ss_conf 00001123443379999804754301057888888860037603789976300
Q gi|254780557|r 83 IQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIV 135 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i 135 (160)
...........+|.+....... +-+ +....+-+|++++++...+
T Consensus 73 -~~~~~~~~~V~~f~~~V~~~~~----~wp----E~~~R~R~W~s~~eA~~~v 116 (122)
T cd04666 73 -SKNRPPRCEVAVFPLEVTEELD----EWP----EMHQRKRKWFSPEEAALLV 116 (122)
T ss_pred -CCCCCCCEEEEEEEEEEEEECC----CCC----CCCCEEEEECCHHHHHHHC
T ss_conf -7998531999999999985112----599----7586799993899999863
No 61
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.48 E-value=5.4e-13 Score=96.06 Aligned_cols=121 Identities=19% Similarity=0.032 Sum_probs=73.5
Q ss_pred EEEEEEEC-CCCCEEEEE--ECCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCC
Q ss_conf 06999984-898399999--26887-766687220121150788888899999999983755222220136612411632
Q gi|254780557|r 5 GVGILILN-QDDLVWVGR--RCFHD-NNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPA 80 (160)
Q Consensus 5 ~V~vvi~n-~~~~iLl~k--R~~~~-~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~ 80 (160)
+|+|+.+| ..++|+|++ |...- ....+=.|.+|.|.+|+||+|++||.||+.||||+++.......
T Consensus 51 av~vL~yDp~~d~vvLveQfR~~~~~~~~~~wllEipAG~id~gE~p~~~A~REl~EEtG~~~~~l~~l~---------- 120 (202)
T PRK10729 51 AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVL---------- 120 (202)
T ss_pred EEEEEEEECCCCEEEEEEECCCHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEE----------
T ss_conf 7999998077896999982351220379996399940203389979899999998887595805289977----------
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHC
Q ss_conf 2200001123443379999804754301057888888860037603789976300001
Q gi|254780557|r 81 HCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDF 138 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~f 138 (160)
.++..+.......+.|+......... .......+.|..++.|++++++.+++..-
T Consensus 121 ~~~~SPG~s~E~i~lf~a~~d~~~~~---~~~gl~dE~EdI~v~~v~~~ea~~~i~~G 175 (202)
T PRK10729 121 SYLASPGGTSERSSIMVGEVDATTAS---GIHGLADENEDIRVHVVSREQAYQWVEEG 175 (202)
T ss_pred EEECCCCCCCEEEEEEEEEECCCCCC---CCCCCCCCCCEEEEEEECHHHHHHHHHCC
T ss_conf 88168975331599999980253345---67888999965799996799999999859
No 62
>PRK10707 hypothetical protein; Provisional
Probab=99.47 E-value=3.5e-13 Score=97.19 Aligned_cols=105 Identities=19% Similarity=0.130 Sum_probs=69.1
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 4898399999268877666872201211507888-888999999999837552222201366124116322200001123
Q gi|254780557|r 12 NQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQE-DPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCIQENGYVG 90 (160)
Q Consensus 12 n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gE-t~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (160)
+.+..+||++|+.+- ..++|...||||++|+++ |+.+||+||+.||+||.......... .+..... .+
T Consensus 41 ~~~~~iLlt~Rs~~L-~~H~GqIsFPGGk~e~~D~~~~~TALREt~EEiGl~~~~v~vlG~------L~~~~t~----sg 109 (190)
T PRK10707 41 RPQPGLLLTQRAIHL-RKHAGQVAFPGGAVDDTDASLIAAALREAEEEVAIPPSAVEVIGV------LPPVDSV----TG 109 (190)
T ss_pred CCCCEEEEEECCCCC-CCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEE------CCCEECC----CC
T ss_conf 899589999756535-679998848996768888888999999888986899432589863------4735667----89
Q ss_pred CCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHC
Q ss_conf 44337999980475430105788888886003760378997630
Q gi|254780557|r 91 QMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNI 134 (160)
Q Consensus 91 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~ 134 (160)
....-|... ....... .....|++++-|++++++++.
T Consensus 110 ~~V~P~Vg~-i~~~~~~------~~~~~EV~~vf~vPL~~ll~~ 146 (190)
T PRK10707 110 YQVTPVVGI-IPPNLPY------RASEDEVAAVFEMPLAEALHL 146 (190)
T ss_pred CEEEEEEEE-ECCCCCC------CCCHHHHHHHEECCHHHHHCC
T ss_conf 889999999-7788777------898488472355419996284
No 63
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.46 E-value=8.2e-14 Score=100.86 Aligned_cols=54 Identities=35% Similarity=0.426 Sum_probs=44.8
Q ss_pred EEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9998489839999926887766687220121150788888899999999983755222220
Q gi|254780557|r 8 ILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLG 68 (160)
Q Consensus 8 vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~ 68 (160)
.+|...++++||+++.. ..|.||||++|+|||+.+||.||++||||+.+.....
T Consensus 4 ~vi~~~~~~~Ll~~~~~-------rgw~~PGG~~e~gEt~~~aa~RE~~EEtG~~~~~l~~ 57 (118)
T cd04665 4 LVICFYDDGLLLVRHKD-------RGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTL 57 (118)
T ss_pred EEEEEECCEEEEEEECC-------CCEECCCCCCCCCCCHHHHHHHHHHHHHCEEEEEEEE
T ss_conf 99997899999999289-------9787983041799999999999887732918410689
No 64
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.45 E-value=3.1e-13 Score=97.48 Aligned_cols=119 Identities=20% Similarity=0.288 Sum_probs=79.0
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-CCCCCEEECCCCCC
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220-13661241163222
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLG-QGDSYIQYDFPAHC 82 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~-~~~~~~~~~~~~~~ 82 (160)
|+|=+.|. +++++||++....+ .|.+...-|.||+|||.++|+.||++||+|+++..... .++.| .+|.
T Consensus 134 PaVIvlV~-~gd~iLLar~~~~~----~~~yS~lAGFvE~GEslE~aV~REV~EE~Gi~V~~i~Y~~SQpW---PFP~-- 203 (257)
T PRK00241 134 PCIIVAVR-RGDEILLARHPRHR----NGVYTVLAGFVEVGESLEQCVAREVMEEVGIKVKNLRYVGSQPW---PFPR-- 203 (257)
T ss_pred CEEEEEEE-ECCEEEECCCCCCC----CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEECCEEEEEECCC---CCCH--
T ss_conf 76999997-29988761478899----98523010036578589997535102346728754017541588---8974--
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHCCHHHHHHHHHHH
Q ss_conf 00001123443379999804754301057888888860037603789976300001379999999999
Q gi|254780557|r 83 IQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDFKKEAYRQVVADF 150 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~fk~~vy~~~l~~l 150 (160)
+...-|.....+ .+|+++ ..|..+.+|++.++++.. |-+..+-++.+...
T Consensus 204 --------sLMlGf~A~~~~--~ei~~d------~~Ei~~A~Wf~~delp~l--Pp~~SIAr~LIe~w 253 (257)
T PRK00241 204 --------SLMLGFHADYDS--GEIVFD------PKEIADAQWFTYDELPLL--PPSGTIARRLIEDT 253 (257)
T ss_pred --------HHHEEEEEEECC--CCCCCC------HHHEEEEEEECHHHHHHC--CCCCCHHHHHHHHH
T ss_conf --------112106999568--863258------333022474568984206--99765999999999
No 65
>KOG2839 consensus
Probab=99.44 E-value=7.4e-13 Score=95.27 Aligned_cols=132 Identities=21% Similarity=0.308 Sum_probs=74.5
Q ss_pred CCCEEEEEEECCCC---CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECC
Q ss_conf 56606999984898---399999268877666872201211507888888999999999837552222201366124116
Q gi|254780557|r 2 YRRGVGILILNQDD---LVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDF 78 (160)
Q Consensus 2 yR~~V~vvi~n~~~---~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~ 78 (160)
||.-+|.|.+.-++ +|||+..+.++ ..|-+|+||+|+||++.+||+||+.||.|++-.........+..-
T Consensus 8 ~r~vagCi~~r~~~~~ieVLlvsSs~~~-----~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~-- 80 (145)
T KOG2839 8 FRLVAGCICYRSDKEKIEVLLVSSSKKP-----HRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFL-- 80 (145)
T ss_pred CEEEEEEEEEEECCCCEEEEEEECCCCC-----CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCHHHCC--
T ss_conf 4899776556305761379999668899-----876278997789976889999999987175554110024121105--
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHCCHHHHHHHHHHHHHHH
Q ss_conf 3222000011234433799998047543010578888888600376037899763000013799999999999986
Q gi|254780557|r 79 PAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDFKKEAYRQVVADFAYLI 154 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~fk~~vy~~~l~~l~~~i 154 (160)
. ..+... .....|.+. ...+ ++..+ ..+.|+..++|++++|.....- + .-...++.+|...+
T Consensus 81 -~-~~~~~~---~k~~~~~l~---v~e~--le~wp-~~~~~~r~r~W~~ledA~~~~~-~--~~m~~al~e~~~~l 142 (145)
T KOG2839 81 -S-KKHRTK---PKGVMYVLA---VTEE--LEDWP-ESEHEFREREWLKLEDAIELCQ-H--KWMKAALEEFLQFL 142 (145)
T ss_pred -C-HHHCCC---CCCEEEHHH---HHHH--CCCCH-HHHCCCCEEEEEEHHHHHHHHH-H--HHHHHHHHHHHHHH
T ss_conf -8-422364---030654334---4553--03676-4511122257766988999987-3--99999999999875
No 66
>KOG0648 consensus
Probab=99.40 E-value=4e-13 Score=96.83 Aligned_cols=124 Identities=23% Similarity=0.285 Sum_probs=85.1
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 66069999848983999992688776668722012115078888889999999998375522222013661241163222
Q gi|254780557|r 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHC 82 (160)
Q Consensus 3 R~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~ 82 (160)
|.+||+.|+|.+++||+++-.+.. ....|.|.+|+|.|+++|++.++|+||++||||++........ . ...
T Consensus 115 ~vgvg~~V~n~~~eVlVv~e~d~~-~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eVla-----~---r~~ 185 (295)
T KOG0648 115 RVGVGAFVLNKKKEVLVVQEKDGA-VKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEVLA-----F---RRA 185 (295)
T ss_pred HEEEEEEEECCCCEEEEEEECCCC-EEECCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHH-----H---HHH
T ss_conf 400013673688636789722553-2312651056137536654013455556777576415466777-----8---764
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHCCHH
Q ss_conf 00001123443379999804754301057888888860037603789976300001379
Q gi|254780557|r 83 IQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDFKKE 141 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~fk~~ 141 (160)
+...........+|.|.+....-+|+. +..|...++|+++.+..+..+-.+.+
T Consensus 186 H~~~~~~~ksd~f~~c~L~p~s~~i~~------~~~ei~~~~Wmp~~e~v~qp~~~~~~ 238 (295)
T KOG0648 186 HNATFGLIKSDMFFTCELRPRSLDITK------CKREIEAAAWMPIEEYVSQPLVHPKG 238 (295)
T ss_pred HCCHHHCCCCCCEEEEEEECCCCCCCH------HHHHHHHHHCCCHHHHHCCCCCCCCH
T ss_conf 111332134651059996346444316------58999987525577763050006521
No 67
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.40 E-value=1.5e-12 Score=93.53 Aligned_cols=109 Identities=24% Similarity=0.233 Sum_probs=65.1
Q ss_pred EEEEEEECC---CCCEEEEEECCCCCCCC----CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEC
Q ss_conf 069999848---98399999268877666----87220121150788888899999999983755222220136612411
Q gi|254780557|r 5 GVGILILNQ---DDLVWVGRRCFHDNNKH----LSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYD 77 (160)
Q Consensus 5 ~V~vvi~n~---~~~iLl~kR~~~~~~~~----~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~ 77 (160)
++|++++.. .-+|||++... ++| .|.|.+|+|++|+||++.+||+||+.||||+.+......+ ..+
T Consensus 2 SAG~ll~R~~~g~~EVLLvHpGG---PfW~rkd~g~WsiPKG~~e~gE~p~~aA~RE~~EEtG~~~~G~~~~L-g~~--- 74 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGG---PFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVDGPFIDL-GSL--- 74 (126)
T ss_pred CCEEEEEEECCCCEEEEEEECCC---CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCE---
T ss_conf 74088899649976999980599---86467778861687877899879899999999976189989861046-010---
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCEECCC---------CCCCCCCCCCEEEECCH
Q ss_conf 6322200001123443379999804754301057---------88888886003760378
Q gi|254780557|r 78 FPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDR---------TAYGYESEFDAWTWVSL 128 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~~~~~~~E~~~~~Wv~~ 128 (160)
....++..+.+.+.-..+..++.-++ .....-+|+|.++|+++
T Consensus 75 --------rq~gGK~V~~WA~e~d~d~~~~~sntf~~EWPp~SG~~~~fPEvDra~Wf~l 126 (126)
T cd04662 75 --------KQSGGKVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI 126 (126)
T ss_pred --------ECCCCCEEEEEEEEECCCHHHCCCCCEEEECCCCCCCCCCCCCCCEECCCCC
T ss_conf --------5479989999988414795343346158766999884431674100023359
No 68
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.40 E-value=3.2e-13 Score=97.36 Aligned_cols=105 Identities=22% Similarity=0.301 Sum_probs=69.1
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC-CCCCEEECCCCCC
Q ss_conf 606999984898399999268877666872201211507888888999999999837552222201-3661241163222
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQ-GDSYIQYDFPAHC 82 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~-~~~~~~~~~~~~~ 82 (160)
|||=++|.+ ..++||.+|..+ ++|...+--|.||+|||.++|+.||++||+||++...... ++.| .+
T Consensus 145 P~vIv~v~~-~~~ilLa~~~~h----~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQPW-------Pf 212 (279)
T COG2816 145 PCVIVAVIR-GDEILLARHPRH----FPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQPW-------PF 212 (279)
T ss_pred CEEEEEEEC-CCCEEECCCCCC----CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCEEEEEEEEEECCCC-------CC
T ss_conf 769999961-772000689887----785300013304578549999999988864717765668732689-------99
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHC
Q ss_conf 0000112344337999980475430105788888886003760378997630
Q gi|254780557|r 83 IQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNI 134 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~ 134 (160)
....+.- |...... .+|+.+. .|..|.+|++.+|++..
T Consensus 213 -----P~SLMig-f~aey~s--geI~~d~------~Eleda~WFs~~evl~~ 250 (279)
T COG2816 213 -----PHSLMLG-FMAEYDS--GEITPDE------GELEDARWFSRDEVLPA 250 (279)
T ss_pred -----CHHHHHH-HEEEECC--CCCCCCC------CHHHHCCCCCHHHHHHH
T ss_conf -----5346524-0255426--6646782------21334113477777762
No 69
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.38 E-value=6.8e-13 Score=95.48 Aligned_cols=50 Identities=32% Similarity=0.417 Sum_probs=39.6
Q ss_pred EEEEECCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99998489--8399999268877666872201211507888888999999999837552
Q gi|254780557|r 7 GILILNQD--DLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKS 63 (160)
Q Consensus 7 ~vvi~n~~--~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~ 63 (160)
.|++..++ .++|+.+. + ...|++|||.||+|||+++||+||+.|||||..
T Consensus 4 pvv~r~~~~~~elL~f~h---p----~~g~q~p~G~ve~gE~~~~aa~RE~~EEtGl~~ 55 (126)
T cd04663 4 PAVLRRNGEVLELLVFEH---P----LAGFQIVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred CEEEECCCCEEEEEEEEC---C----CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 689961697068999817---8----885476576758998989999999888768764
No 70
>KOG3084 consensus
Probab=99.35 E-value=4.5e-13 Score=96.55 Aligned_cols=109 Identities=23% Similarity=0.280 Sum_probs=72.3
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-CCCCCEEECCCCCC
Q ss_conf 60699998489839999926887766687220121150788888899999999983755222220-13661241163222
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLG-QGDSYIQYDFPAHC 82 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~-~~~~~~~~~~~~~~ 82 (160)
|+|=.+|++.+|+.+|+.|.. .+.+|.|..+.|.+|+|||.++||.||++||+|+++..+.. .++.|... |
T Consensus 188 PvVIm~li~~d~~~~LL~R~~---r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQPWP~~--p--- 259 (345)
T KOG3084 188 PVVIMLLIDHDGKHALLGRQK---RYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQPWPLM--P--- 259 (345)
T ss_pred CEEEEEEECCCCCEEEEECCC---CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEECCCCCCC--C---
T ss_conf 869999976888774100146---79996010000027755029999999889974954135766504898999--6---
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHH
Q ss_conf 000011234433799998047543010578888888600376037899763
Q gi|254780557|r 83 IQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPN 133 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~ 133 (160)
+..-.+++.+.....+|+++. +.|..|.+|++-.+..+
T Consensus 260 --------~SLMIgc~ala~~~~~I~vd~-----dlEleDaqwF~r~ev~~ 297 (345)
T KOG3084 260 --------QSLMIGCLALAKLNGKISVDK-----DLELEDAQWFDREEVKS 297 (345)
T ss_pred --------HHHHHHHHHHHHHCCCCCCCC-----CHHHHHCCCCCHHHHHH
T ss_conf --------689999999986178512375-----34544234424999999
No 71
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD; InterPro: IPR014078 The proteins in this entry belong to the nudix family and share some sequence identity with Escherichia coli MutT but appear not to be functionally interchangeable with it. The functional assignment of the proteins in this family is contentious. Reference challenges the findings of reference , both in interpretation and in enzyme assay results..
Probab=99.28 E-value=1.3e-12 Score=93.80 Aligned_cols=52 Identities=29% Similarity=0.326 Sum_probs=42.8
Q ss_pred EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99848983999992688776668722012115078888889999999998375522222
Q gi|254780557|r 9 LILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLL 67 (160)
Q Consensus 9 vi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~ 67 (160)
||..-+++.||...... .-.||||+||.|||+.+||+|||+||||-.+..+.
T Consensus 30 vip~~~~qWLlT~H~~R-------GlEFPGGKvE~GEt~~eAA~REv~EETGA~v~~l~ 81 (158)
T TIGR02705 30 VIPRYKDQWLLTEHKRR-------GLEFPGGKVEEGETSKEAAIREVYEETGAIVKELH 81 (158)
T ss_pred EEEEECCEEEECCCCCC-------CCCCCCCEECCCCCHHHHHHEECCCCCCEEEEEEE
T ss_conf 97556893344035878-------70478880079988467651001003580754688
No 72
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.23 E-value=1.9e-10 Score=81.29 Aligned_cols=123 Identities=15% Similarity=0.278 Sum_probs=75.3
Q ss_pred EEECCCC--CEEEEEECCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-CCCCCCEEECCCCCCCC
Q ss_conf 9984898--39999926887766687220-12115078888889999999998375522222-01366124116322200
Q gi|254780557|r 9 LILNQDD--LVWVGRRCFHDNNKHLSLWQ-MPQGGINPQEDPLDAAYRELYEETGIKSISLL-GQGDSYIQYDFPAHCIQ 84 (160)
Q Consensus 9 vi~n~~~--~iLl~kR~~~~~~~~~g~W~-~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~-~~~~~~~~~~~~~~~~~ 84 (160)
++-+.++ ++.+.||+.++ ..++|+|+ +.+||+..|||+.+|++||+.||+||...... ........|.... .
T Consensus 40 ~v~~~~~~~~lWv~rRs~~K-~~~Pg~~D~~vaGg~~~g~~~~~~~~rE~~EEagi~~~l~~~~~~~G~isy~~~~---~ 115 (180)
T cd03676 40 YVRDEDGGLRIWIPRRSPTK-ATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREG---E 115 (180)
T ss_pred EEECCCCCEEEEEECCCCCC-CCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCEECEEEEEEEEC---C
T ss_conf 99879997899986268987-7899753011113667998999999999998819998998315511179999876---8
Q ss_pred CCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCH--HCCHHH
Q ss_conf 0011234433799998047543010578888888600376037899763000--013799
Q gi|254780557|r 85 ENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVV--DFKKEA 142 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~--~fk~~v 142 (160)
...........|-+.+.. +-.+..++.|.+++.|++++++.+.+. +||-..
T Consensus 116 ~~gl~~e~~~vYdl~lp~-------d~~P~~~DGEVe~F~l~~v~ev~~~l~~g~Fkpn~ 168 (180)
T cd03676 116 AGGLQPEVEYVYDLELPP-------DFIPAPQDGEVESFRLLTIDEVLRALKEGEFKPNC 168 (180)
T ss_pred CCCCCCCEEEEEEEEECC-------CCEECCCCCCEEEEEEECHHHHHHHHHCCCCCCCC
T ss_conf 777355389999998289-------96057999866369996599999999739976520
No 73
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=99.10 E-value=3.8e-10 Score=79.53 Aligned_cols=116 Identities=20% Similarity=0.158 Sum_probs=74.6
Q ss_pred EEEEECCCCCEEEEEECCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-CCCCCCEEECCCCCCCC
Q ss_conf 99998489839999926887766687220-12115078888889999999998375522222-01366124116322200
Q gi|254780557|r 7 GILILNQDDLVWVGRRCFHDNNKHLSLWQ-MPQGGINPQEDPLDAAYRELYEETGIKSISLL-GQGDSYIQYDFPAHCIQ 84 (160)
Q Consensus 7 ~vvi~n~~~~iLl~kR~~~~~~~~~g~W~-~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~-~~~~~~~~~~~~~~~~~ 84 (160)
-..|||++|++||.||+..+ ..|+|.|. -..||=-+|||...|++|-+.+|+||.+..+. ..+-.-+.|..+..-
T Consensus 37 S~~lFne~g~LLltrRA~~K-~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~-- 113 (185)
T COG1443 37 SSFLFNERGQLLLTRRALSK-KTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADPD-- 113 (185)
T ss_pred HEEEECCCCCEEEEHHHHHC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCC--
T ss_conf 04686788866310144532-557663436542798688741889999889983998754474021465178635898--
Q ss_pred CCCCCCCCCEEEEEEECCC-CCCEECCCCCCCCCCCCCEEEECCHHHHHHCCH
Q ss_conf 0011234433799998047-543010578888888600376037899763000
Q gi|254780557|r 85 ENGYVGQMQKWFAFRFQGL-TSEICVDRTAYGYESEFDAWTWVSLWDTPNIVV 136 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~ 136 (160)
...-.+.- +.+....+ ..++ .+.|..+|+|++++++.+++.
T Consensus 114 --~~~E~Eic-~V~~~~~~~~~~~--------npdEV~~~~wv~~e~l~~~~~ 155 (185)
T COG1443 114 --GIVENEIC-PVLAARLDSALDP--------NPDEVMDYRWVSPEDLKEMVD 155 (185)
T ss_pred --CCCEEEEE-EEEEEEECCCCCC--------CHHHHHHEECCCHHHHHHHHC
T ss_conf --75300241-3888861377879--------968862411268999987524
No 74
>KOG3041 consensus
Probab=99.06 E-value=3e-09 Score=74.28 Aligned_cols=120 Identities=24% Similarity=0.163 Sum_probs=75.9
Q ss_pred CEEEEE-EECCCCC--EEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCC
Q ss_conf 606999-9848983--9999926887766687220121150788888899999999983755222220136612411632
Q gi|254780557|r 4 RGVGIL-ILNQDDL--VWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPA 80 (160)
Q Consensus 4 ~~V~vv-i~n~~~~--iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~ 80 (160)
.+|+++ ++-.+|+ ++|.|.-..| ...=+-.||.|-||.||++++||+|||+||||+.-. ....+ ...+..|
T Consensus 74 dgVaIl~il~~dG~~~ivL~kQfRpP--~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gk-v~~~s--~~~f~DP- 147 (225)
T KOG3041 74 DGVAILAILESDGKPYIVLVKQFRPP--TGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGK-VDMVS--PTVFLDP- 147 (225)
T ss_pred CEEEEEEEEECCCCEEEEEEEEECCC--CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCE-EEECC--CCEECCC-
T ss_conf 70799999804896899997750489--774789723554348976678889988887485531-44126--3077279-
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCH
Q ss_conf 22000011234433799998047543010578888888600376037899763000
Q gi|254780557|r 81 HCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVV 136 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~ 136 (160)
...+.......+...++..+ |.++-....+.||.++.-+++.++.+...
T Consensus 148 ------Gltn~~~~iv~v~idg~~pE-nqrp~q~ledgEfIev~~i~~~~L~~~~~ 196 (225)
T KOG3041 148 ------GLTNCNLCIVVVDIDGDVPE-NQRPVQQLEDGEFIEVFLIPLSELWRELA 196 (225)
T ss_pred ------CCCCCCEEEEEEEECCCCCC-CCCCCCCCCCCCEEEEEEEEHHHHHHHHH
T ss_conf ------88887158999994388710-15866567888569999841888999998
No 75
>KOG3069 consensus
Probab=99.05 E-value=1.1e-09 Score=76.74 Aligned_cols=115 Identities=19% Similarity=0.139 Sum_probs=70.4
Q ss_pred EEEEEEECC-CC--CEEEEEECCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCC
Q ss_conf 069999848-98--3999992688776668722012115078-8888899999999983755222220136612411632
Q gi|254780557|r 5 GVGILILNQ-DD--LVWVGRRCFHDNNKHLSLWQMPQGGINP-QEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPA 80 (160)
Q Consensus 5 ~V~vvi~n~-~~--~iLl~kR~~~~~~~~~g~W~~PgG~ve~-gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~ 80 (160)
.|-+.|++. +| ++||+||+.+- ..++|.=.||||+.|. +.|-.+||.||+.||+|++++..... ...+.
T Consensus 45 aVlI~L~~~~~~~l~vLltkRSr~L-rshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~------g~l~~ 117 (246)
T KOG3069 45 AVLIPLVQVGSGELSVLLTKRSRTL-RSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVL------GALPP 117 (246)
T ss_pred CEEEEEEECCCCCEEEEEEECCCCC-CCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH------HHCCC
T ss_conf 2899999858885689998335633-3568715578876783445048889887898739998882564------21544
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHC
Q ss_conf 220000112344337999980475430105788888886003760378997630
Q gi|254780557|r 81 HCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNI 134 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~ 134 (160)
.+.+....+. .. +-+.... .+-........|..+.-||++++++..
T Consensus 118 ~~~r~~~~v~-p~----v~~l~~~---~~l~~~~ln~gEv~~~F~VPL~~ll~~ 163 (246)
T KOG3069 118 FVLRSGWSVF-PV----VGFLSDK---KILPSLRLNSGEVESAFWVPLTDLLLP 163 (246)
T ss_pred EEECCCCCCC-EE----EEEEECC---CCCCCCCCCCHHEEEEEEEEHHHHHHH
T ss_conf 0452676313-06----8997314---334213588024023322018997324
No 76
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.94 E-value=2.4e-09 Score=74.85 Aligned_cols=106 Identities=20% Similarity=0.189 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCC----
Q ss_conf 8722012115078888889999999998375522222013661241163222000011234433799998047543----
Q gi|254780557|r 31 LSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSE---- 106 (160)
Q Consensus 31 ~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 106 (160)
.|.|.+|+|-...||+|..||.||..||+||.+.-....+ -.....-++...-|...-.-+..+
T Consensus 35 ~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~l------------G~~kQ~GGKvVta~~veae~Dva~~rSn 102 (161)
T COG4119 35 DGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDL------------GSLKQSGGKVVTAFGVEAELDVADARSN 102 (161)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCEEECCCHHHH------------HHHCCCCCCEEEEEEEEEEEEHHHHHCC
T ss_conf 7741056665478867778888876665123524706554------------3430579708999864310334353156
Q ss_pred -EECCC----CCCCCCCCCCEEEECCHHHHHHCCHHCCHHHHHHHHH
Q ss_conf -01057----8888888600376037899763000013799999999
Q gi|254780557|r 107 -ICVDR----TAYGYESEFDAWTWVSLWDTPNIVVDFKKEAYRQVVA 148 (160)
Q Consensus 107 -i~~~~----~~~~~~~E~~~~~Wv~~~el~~~i~~fk~~vy~~~l~ 148 (160)
+.+.. ..-...+|.+..-|+++.+....+.-.+|+...+.++
T Consensus 103 tFe~eWPprSG~M~~FPEVDRagWF~l~eAr~Kil~gQRpfldrL~a 149 (161)
T COG4119 103 TFELEWPPRSGKMRKFPEVDRAGWFPLAEARTKILKGQRPFLDRLMA 149 (161)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCEECHHHHHHHHHCCCHHHHHHHH
T ss_conf 03665699888643176543226346178786776045527899998
No 77
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.78 E-value=5.6e-08 Score=66.87 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=72.2
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 66069999848983999992688776668722012115078888889999999998375522222013661241163222
Q gi|254780557|r 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHC 82 (160)
Q Consensus 3 R~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~ 82 (160)
|..++++|++.+|+|||.||-+. +-+.|.|+||+.-++.++...++...++..+.+....... .+
T Consensus 2 ~~~~~~~ii~~~~~iLl~kRp~~--Gll~gLwefP~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~v 66 (118)
T cd03431 2 RRGIAVVVIRNDGRVLLEKRPEK--GLLAGLWEFPSVEWEEEADGEEALLSALKKALRLSLEPLG-------------TV 66 (118)
T ss_pred EEEEEEEEEECCCEEEEEECCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-------------EE
T ss_conf 59999999977999999988999--8456530078665565646279998766655301221044-------------04
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHCCHHHHHHHHH
Q ss_conf 000011234433799998047543010578888888600376037899763000013799999999
Q gi|254780557|r 83 IQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDFKKEAYRQVVA 148 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~fk~~vy~~~l~ 148 (160)
.+...+.......|.+.. +... ....+++|++.+++.+..+| .+.+++++
T Consensus 67 ~H~fSH~~l~~~~~~~~~---------~~~~----~~~~~~~Wv~~~~l~~~~~p---~~~~Kil~ 116 (118)
T cd03431 67 KHTFTHFRLTLHVYLARL---------EGDL----LAPDEGRWVPLEELDEYALP---TVMRKILE 116 (118)
T ss_pred EEEECCEEEEEEEEEEEE---------CCCC----CCCCCCEEEEHHHCCCCCCC---HHHHHHHH
T ss_conf 134241799999999996---------3798----78988899767885406898---79999997
No 78
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=98.61 E-value=4.7e-07 Score=61.50 Aligned_cols=109 Identities=19% Similarity=0.280 Sum_probs=65.2
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC-C-CCCEEECCCCCCCCCCCCCCCC
Q ss_conf 8399999268877666872201211507888888999999999837552222201-3-6612411632220000112344
Q gi|254780557|r 15 DLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQ-G-DSYIQYDFPAHCIQENGYVGQM 92 (160)
Q Consensus 15 ~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 92 (160)
.-+||+|.... ..+.|.||.|.++.|||.++||-|.+.|-+|-........ . ...+.+..|.... .....+..
T Consensus 13 tLyLlVk~k~g----~~~~W~fP~~~~~~~EtLr~~Aer~L~~~~G~~~~~~~vgnaP~g~~k~k~p~~~~-~~~~~G~K 87 (132)
T cd04661 13 TLVLLVQQKVG----SQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVR-NEGIVGAK 87 (132)
T ss_pred EEEEEEEECCC----CCCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEECCCCCC-CCCCCCEE
T ss_conf 39999995379----88880288424667854899999999986077736789626875889875685224-44666347
Q ss_pred CEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHH
Q ss_conf 337999980475430105788888886003760378997630000
Q gi|254780557|r 93 QKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVD 137 (160)
Q Consensus 93 ~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~ 137 (160)
.-+|-..+.+...+ +. ....||+|++-+||.+.+.+
T Consensus 88 ~Ff~ka~~~~G~~~--~~-------~~~~df~Wltk~EL~~~l~~ 123 (132)
T cd04661 88 VFFFKARYMSGQFE--LS-------QNQVDFKWLAKEELQKYLNP 123 (132)
T ss_pred EEEEEEEEECCCCC--CC-------CCCCEEEECCHHHHHHHCCH
T ss_conf 99999999558646--56-------77520387089999876599
No 79
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.53 E-value=2.3e-07 Score=63.33 Aligned_cols=41 Identities=24% Similarity=0.247 Sum_probs=36.2
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 39999926887766687220121150788888899999999983755
Q gi|254780557|r 16 LVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIK 62 (160)
Q Consensus 16 ~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~ 62 (160)
+||.+||.+. |.|.+|||.||+||+..++++||+.||..-.
T Consensus 50 efvai~r~d~------~~WAlPGGmVdpGE~vs~tL~Ref~eEal~~ 90 (186)
T cd03670 50 QFVAIKRPDS------GEWAIPGGMVDPGEKISATLKREFGEEALNS 90 (186)
T ss_pred EEEEEEECCC------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8999983488------8542476526788405089999999999886
No 80
>KOG0142 consensus
Probab=98.44 E-value=3e-07 Score=62.65 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=75.9
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCC---------CCCCCCC-CCCHHHHHHHHHHHHHCCCCCCCC---CCC
Q ss_conf 606999984898399999268877666872201---------2115078-888889999999998375522222---013
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQM---------PQGGINP-QEDPLDAAYRELYEETGIKSISLL---GQG 70 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~---------PgG~ve~-gEt~~~Aa~REl~EEtGi~~~~~~---~~~ 70 (160)
++-.|++||.+|++||.||++.+ -.|++.|.= |+.-.+. +.....||.|-|+-|+||.....- ..+
T Consensus 53 RaFSVFlFns~~~lLlQqRS~~K-itFP~~~TNtccSHPL~~~~el~e~d~lGvr~AAqRkL~~ELGIp~e~v~pee~~~ 131 (225)
T KOG0142 53 RAFSVFLFNSKNELLLQQRSDEK-ITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNF 131 (225)
T ss_pred HEEEEEEECCCCHHHHHHHCCCC-CCCCCHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCEE
T ss_conf 20468986585147765403544-11650555324248477866630574276899999987776199723068788100
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCH
Q ss_conf 661241163222000011234433799998047543010578888888600376037899763000
Q gi|254780557|r 71 DSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVV 136 (160)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~ 136 (160)
..-+.|..+..-.+... +.. |.+.+.. ++++++. ..|..+++||+.+|+.+++.
T Consensus 132 ltrihYkA~sdg~wGEh----EID-YiL~~~~---~~~lnPn----pnEv~e~ryvs~eelkel~~ 185 (225)
T KOG0142 132 LTRIHYKAPSDGIWGEH----EID-YILFLVK---DVTLNPN----PNEVSEIRYVSREELKELVA 185 (225)
T ss_pred HEEEEEECCCCCCCCCC----EEE-EEEEEEC---CCCCCCC----HHHHHHHHEECHHHHHHHHH
T ss_conf 11457615788875400----134-7999843---6788978----44555721126999999985
No 81
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1; InterPro: IPR011876 This entry represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0008299 isoprenoid biosynthetic process.
Probab=98.28 E-value=9.4e-06 Score=53.90 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=71.9
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCCCCCCC-CCCCCCCC---CC-----------CHHHHHHHHHHHHHCCCCCCCC-CC
Q ss_conf 699998489839999926887766687220-12115078---88-----------8889999999998375522222-01
Q gi|254780557|r 6 VGILILNQDDLVWVGRRCFHDNNKHLSLWQ-MPQGGINP---QE-----------DPLDAAYRELYEETGIKSISLL-GQ 69 (160)
Q Consensus 6 V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~-~PgG~ve~---gE-----------t~~~Aa~REl~EEtGi~~~~~~-~~ 69 (160)
=-++|||.++++||.||+..| ..|||.|. -=-||=-+ || -..+||+|-++-|+||...... .+
T Consensus 33 FS~flfn~~~~LL~qrRa~~K-~twP~vWTNsCCsHP~~q~~G~l~q~~~~~~~~Gvk~~A~RRl~~~LGi~~~~~~~~~ 111 (190)
T TIGR02150 33 FSVFLFNDQGRLLLQRRAASK-ITWPGVWTNSCCSHPLPQTPGTLAQSTLEENVLGVKNAAIRRLLAELGIPADDVDVDE 111 (190)
T ss_pred EEEEEECCCCCEEEEEECCCC-CCCCCCEECCEECCCCCCCCCCCHHCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 676777189836888840118-8437840034027878888885101146111103326788878763488512236757
Q ss_pred CCC--CEEECCCCCCCCCCCCCCCCCEEEEEEECC--CCCCEECCCCCCCCCCCCCEEEECCHHHHHHC
Q ss_conf 366--124116322200001123443379999804--75430105788888886003760378997630
Q gi|254780557|r 70 GDS--YIQYDFPAHCIQENGYVGQMQKWFAFRFQG--LTSEICVDRTAYGYESEFDAWTWVSLWDTPNI 134 (160)
Q Consensus 70 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~ 134 (160)
+.. -+.|..+.. .....|....-+.+.... ....+++|+ .|+++++|++.+++.+.
T Consensus 112 ~~~L~~~~Y~A~~~---s~g~~G~h~~~~~~~~~~nk~~~~~~PnP------~~v~~~~W~~~~~~~~~ 171 (190)
T TIGR02150 112 LTVLPRFSYRARDG---SDGAWGIHEVCPVFFARKNKADVPVNPNP------PEVAAIKWVSLEVLREV 171 (190)
T ss_pred HHHCCCCEEEECCC---CCCCCCEEEEEEEEEEECCCCCCCCCCCC------CHHHEEEECCHHHHHHH
T ss_conf 20034733661443---45778758511589997234588876897------22421440268999998
No 82
>KOG2937 consensus
Probab=98.13 E-value=5.2e-07 Score=61.25 Aligned_cols=107 Identities=24% Similarity=0.321 Sum_probs=66.3
Q ss_pred CEEEEEEECCCC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 606999984898-3999992688776668722012115078888889999999998375522222013661241163222
Q gi|254780557|r 4 RGVGILILNQDD-LVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHC 82 (160)
Q Consensus 4 ~~V~vvi~n~~~-~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~ 82 (160)
|.-|++++|+.- ++||++- . ...-|.||.|++..+|+-.+||+||+.||||.+.+..... ..+
T Consensus 83 Pv~ga~ild~~~sr~llv~g--~----qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~----------~e~ 146 (348)
T KOG2937 83 PVRGAIILDEKRSRCLLVKG--W----QASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQD----------NEG 146 (348)
T ss_pred CCCHHHHHHHHHHHHEEEEC--E----ECCCCCCCCCCCCCCCHHHHCCHHCCCCHHHCCHHHHHCC----------CCC
T ss_conf 87167654236655500100--0----1245555676655432121122112352120368887350----------458
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHH
Q ss_conf 00001123443379999804754301057888888860037603789976
Q gi|254780557|r 83 IQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTP 132 (160)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~ 132 (160)
+...+ ..+..+++...|-..+++....- --|.+...|..++++.
T Consensus 147 Ie~nI---~dq~~~~fIi~gvs~d~~f~~~v---~~eis~ihW~~l~~l~ 190 (348)
T KOG2937 147 IETNI---RDQLVRLFIINGVSEDTNFNPRV---RKEISKIHWHYLDHLV 190 (348)
T ss_pred CCEEH---HHCEEEEEEECCCEEEEECCHHH---HCCCCCEEEEEHHHHC
T ss_conf 53013---20100356652613565115153---2453302444242106
No 83
>KOG4195 consensus
Probab=97.93 E-value=8.9e-06 Score=54.05 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=34.9
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 399999268877666872201211507888888999999999837
Q gi|254780557|r 16 LVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60 (160)
Q Consensus 16 ~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtG 60 (160)
+++.+||.+. |.|.+|||.||+||...+++.||+-||.=
T Consensus 140 e~vavkr~d~------~~WAiPGGmvdpGE~vs~tLkRef~eEa~ 178 (275)
T KOG4195 140 EFVAVKRPDN------GEWAIPGGMVDPGEKVSATLKREFGEEAM 178 (275)
T ss_pred EEEEEECCCC------CCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8999864788------74237877678123443999999899877
No 84
>PRK10880 adenine DNA glycosylase; Provisional
Probab=97.84 E-value=0.0001 Score=47.89 Aligned_cols=113 Identities=16% Similarity=0.225 Sum_probs=61.1
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 69999848983999992688776668722012115078888889999999998375522222013661241163222000
Q gi|254780557|r 6 VGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCIQE 85 (160)
Q Consensus 6 V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~ 85 (160)
...+|++.+|+|||.||.. .+-|.|.|.||. + ..+..+++...+.|+........ ..+.+.
T Consensus 233 ~~~~ii~~~~~ill~kR~~--~giw~gLw~fP~--~-----~~~~~~~~~~~~~~~~~~~~~~l----------~~~~H~ 293 (350)
T PRK10880 233 GYFLLLQHEDEVWLAQRPP--SGLWGGLYCFPQ--F-----ADEEELRQWLAQRGINADNLTQL----------TAFRHT 293 (350)
T ss_pred EEEEEEEECCEEEEEECCC--CCHHHHCCCCCC--C-----CCHHHHHHHHHHCCCCCCCCEEC----------CCEEEE
T ss_conf 9999995099899983797--773454454888--8-----86778999999828981000114----------762584
Q ss_pred CCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHCCHHHHHHHHHHHH
Q ss_conf 011234433799998047543010578888888600376037899763000013799999999999
Q gi|254780557|r 86 NGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDFKKEAYRQVVADFA 151 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~fk~~vy~~~l~~l~ 151 (160)
..+ |.+...... +.+..... ..+-....|++++++.+..+| . ..++++..|+
T Consensus 294 FSH-------f~L~I~p~~--~~~~~~~~--~~~~~~~~W~~~~~~~~~GLP--a-PvkKiL~~L~ 345 (350)
T PRK10880 294 FSH-------FHLDIVPMW--LPVSSFTG--CMDEGNALWYNLAQPPSVGLA--A-PVERLLQQLR 345 (350)
T ss_pred EEC-------EEEEEEEEE--EEECCCCC--CCCCCCCEEECCCCCCCCCCC--H-HHHHHHHHHC
T ss_conf 106-------076738999--98145001--355667856444530204787--8-9999999714
No 85
>TIGR00052 TIGR00052 conserved hypothetical protein TIGR00052; InterPro: IPR004385 This entry describes a family of proteins which appear to catalyse the hydrolysis of phosphorus-containing acid anhydrides such as nucleoside diphosphate, for example ADP-mannose and UDP-glucose . Some of these enzymes play a key role in glycogen biosynthesis.; GO: 0016818 hydrolase activity acting on acid anhydrides in phosphorus-containing anhydrides, 0046872 metal ion binding.
Probab=97.45 E-value=0.00066 Score=43.15 Aligned_cols=131 Identities=18% Similarity=0.122 Sum_probs=68.8
Q ss_pred EEEEEEECCCCC-EEEEE--ECCCC---CC---CCCC-----CCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 069999848983-99999--26887---76---6687-----220121150788-8888999999999837552222201
Q gi|254780557|r 5 GVGILILNQDDL-VWVGR--RCFHD---NN---KHLS-----LWQMPQGGINPQ-EDPLDAAYRELYEETGIKSISLLGQ 69 (160)
Q Consensus 5 ~V~vvi~n~~~~-iLl~k--R~~~~---~~---~~~g-----~W~~PgG~ve~g-Et~~~Aa~REl~EEtGi~~~~~~~~ 69 (160)
+|+|+++|++.+ |.|++ |...= .. +|.- .+.+-.|.|++| |+|+++|.||..||+|+.+++....
T Consensus 46 ~~~vL~Y~~~~d~vVlv~Q~R~A~y~~~~~f~~~~~ltiDGYtYe~~ag~v~~~n~~~E~~a~~EA~EE~G~~vsPk~~~ 125 (199)
T TIGR00052 46 AAAVLLYDPKKDTVVLVEQFRIAAYARREEFKCPWLLTIDGYTYELVAGMVEKGNESPEDVARREAIEEAGYQVSPKNLE 125 (199)
T ss_pred EEEEEEECCCCCEEEEEEEEEEEEEECCCCCCCCCCCEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCE
T ss_conf 03885225866669999862003443685201764210032144554222530388666776554264468665586400
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHCCHHHHHHH
Q ss_conf 36612411632220000112344337999980475430105788888886003760378997630000137999999
Q gi|254780557|r 70 GDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDFKKEAYRQV 146 (160)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~fk~~vy~~~ 146 (160)
... ..|.-|. -.....+.|........ ..+...-..+.+...+.-+.-+++.+.+-+||-+--..+
T Consensus 126 ~~~-~~y~spG-------g~~el~~lf~aEv~~~~---~~~~gGg~d~e~i~~l~l~~sEqAl~~i~~G~i~~~~~v 191 (199)
T TIGR00052 126 KIL-SFYSSPG-------GVTELIHLFIAEVDKNQ---AAGIGGGVDEEEIEVLHLVRSEQALQWIKEGKIDNGKTV 191 (199)
T ss_pred EEE-EEEECCC-------CCHHHHHHHHHEHHHHH---HCCCCCCCCCCCEEEEEECCCHHHHHHHHCCCCCHHHHH
T ss_conf 233-3440689-------72021232110101454---146799864454038985273678887643521216899
No 86
>KOG4313 consensus
Probab=97.32 E-value=0.0013 Score=41.49 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=69.2
Q ss_pred CEEEEEECCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 39999926887766687220-121150788888899999999983755222-2201366124116322200001123443
Q gi|254780557|r 16 LVWVGRRCFHDNNKHLSLWQ-MPQGGINPQEDPLDAAYRELYEETGIKSIS-LLGQGDSYIQYDFPAHCIQENGYVGQMQ 93 (160)
Q Consensus 16 ~iLl~kR~~~~~~~~~g~W~-~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (160)
+|.+-|||.++ .+|+|+|+ +.+||+..|-...++|+.|..||..+.... ..+...+...|.... ..+.-+..
T Consensus 149 ~iWvprRS~TK-qTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~e-----sr~~~~pe 222 (306)
T KOG4313 149 CIWVPRRSNTK-QTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFE-----SRQGLFPE 222 (306)
T ss_pred EEEECCCCCCC-CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCEECCEEEEEEEE-----HHHCCCCC
T ss_conf 89830468844-5676145522224656672177899998887617846667513103416888662-----13236866
Q ss_pred EEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHC
Q ss_conf 37999980475430105788888886003760378997630
Q gi|254780557|r 94 KWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNI 134 (160)
Q Consensus 94 ~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~ 134 (160)
..|.+.+. +..+--++..+.|...+.-+++.|.++.
T Consensus 223 ~qYVfDL~-----l~~d~iP~~nDGEV~~F~Lltl~~~v~~ 258 (306)
T KOG4313 223 TQYVFDLE-----LPLDFIPQNNDGEVQAFELLTLKDCVER 258 (306)
T ss_pred CEEEEECC-----CCHHHCCCCCCCCEEEEEEECHHHHHHH
T ss_conf 25998245-----7453047788873345763219999999
No 87
>KOG4548 consensus
Probab=97.27 E-value=0.0019 Score=40.49 Aligned_cols=106 Identities=17% Similarity=0.255 Sum_probs=63.1
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCC---------CC
Q ss_conf 9839999926887766687220121150-7888888999999999837552222201366124116322---------20
Q gi|254780557|r 14 DDLVWVGRRCFHDNNKHLSLWQMPQGGI-NPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAH---------CI 83 (160)
Q Consensus 14 ~~~iLl~kR~~~~~~~~~g~W~~PgG~v-e~gEt~~~Aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~---------~~ 83 (160)
+.-+||++|.-.+ .+.|.||.+.. +.+++.+.+|.|+++.=.|-.. ..|+....|-. ..
T Consensus 138 r~LyLLV~~k~g~----~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~-------~t~fvgnaP~g~~~~q~pr~~~ 206 (263)
T KOG4548 138 RKLYLLVKRKFGK----SSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENK-------STWFVGNAPFGHTPLQSPREMT 206 (263)
T ss_pred CEEEEEEEECCCC----CCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHH-------HHHEECCCCCCCCCCCCCCCCC
T ss_conf 0178877632676----5520577865477652288899999998723302-------3310205745656666841234
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHCCH
Q ss_conf 000112344337999980475430105788888886003760378997630000137
Q gi|254780557|r 84 QENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDFKK 140 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~fk~ 140 (160)
... ..+....+|.+.+...... ...-+.|+-|++.+++.+...++..
T Consensus 207 ~e~-~~~sk~ff~k~~lv~~~~~---------kn~n~edfvWvTkdel~e~l~~~~~ 253 (263)
T KOG4548 207 TEE-PVSSKVFFFKASLVANSNQ---------KNQNKEDFVWVTKDELGEKLPKFAK 253 (263)
T ss_pred CCC-CCCCEEEEEEEEECCCCCH---------HCCCCCCEEEECHHHHHHHCCHHHH
T ss_conf 212-4453157765320156412---------2045341488655887535456788
No 88
>PRK13910 DNA glycosylase MutY; Provisional
Probab=96.74 E-value=0.0046 Score=38.25 Aligned_cols=28 Identities=11% Similarity=0.067 Sum_probs=21.1
Q ss_pred EEEECCHHHHHHCCHHCCHHHHHHHHHHHHH
Q ss_conf 3760378997630000137999999999999
Q gi|254780557|r 122 AWTWVSLWDTPNIVVDFKKEAYRQVVADFAY 152 (160)
Q Consensus 122 ~~~Wv~~~el~~~i~~fk~~vy~~~l~~l~~ 152 (160)
.++|++++|+.+..+|. .++++++.|+.
T Consensus 257 ~~~W~~l~el~~l~lps---~~kKIL~~Lk~ 284 (290)
T PRK13910 257 PIRFYSLKDLETLPISS---MTLKILNFLKQ 284 (290)
T ss_pred CCCEEEHHHHHHCCCCC---HHHHHHHHHHH
T ss_conf 77431677752088982---89999999977
No 89
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=96.70 E-value=0.013 Score=35.65 Aligned_cols=111 Identities=20% Similarity=0.265 Sum_probs=63.5
Q ss_pred EEEECCCCCEEEEEECCCCCCC-CCCCCC-CCCCCCCCCC--CHHHH-----HHHHHHHHHCCCCCCC-CCCCCCCEEEC
Q ss_conf 9998489839999926887766-687220-1211507888--88899-----9999999837552222-20136612411
Q gi|254780557|r 8 ILILNQDDLVWVGRRCFHDNNK-HLSLWQ-MPQGGINPQE--DPLDA-----AYRELYEETGIKSISL-LGQGDSYIQYD 77 (160)
Q Consensus 8 vvi~n~~~~iLl~kR~~~~~~~-~~g~W~-~PgG~ve~gE--t~~~A-----a~REl~EEtGi~~~~~-~~~~~~~~~~~ 77 (160)
++|.|++ +||+-+|....+-. ..+... =-|||+..++ ++.++ +-||+.||+++.-... ..++
T Consensus 66 vvi~~ed-evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~------- 137 (203)
T COG4112 66 VVIMDED-EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEF------- 137 (203)
T ss_pred EEEECCC-EEEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHEE-------
T ss_conf 9995187-79999721476344332431223255445688723099997000677778873947777543003-------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHH
Q ss_conf 63222000011234433799998047543010578888888600376037899763
Q gi|254780557|r 78 FPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPN 133 (160)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~ 133 (160)
....-......++.+.-.++...+..+++..... +.-+++|+.+.++..
T Consensus 138 -lGlINdd~neVgkVHiG~lf~~~~k~ndvevKEk------d~~~~kwik~~ele~ 186 (203)
T COG4112 138 -LGLINDDTNEVGKVHIGALFLGRGKFNDVEVKEK------DLFEWKWIKLEELEK 186 (203)
T ss_pred -EEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEC------CEEEEEEEEHHHHHH
T ss_conf -6644378861012788889985124241024310------111123213777888
No 90
>KOG1689 consensus
Probab=94.86 E-value=0.12 Score=29.90 Aligned_cols=52 Identities=31% Similarity=0.418 Sum_probs=40.7
Q ss_pred CCEEEE-EEECCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 660699-998489--83999992688776668722012115078888889999999998375
Q gi|254780557|r 3 RRGVGI-LILNQD--DLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI 61 (160)
Q Consensus 3 R~~V~v-vi~n~~--~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi 61 (160)
|++|-+ +|..+. -.|||.+-. .....+|||..++||+-.+.+.|=+-|-+|-
T Consensus 69 RrsvegvlivheH~lPHvLLLQig-------~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr 123 (221)
T KOG1689 69 RRSVEGVLIVHEHNLPHVLLLQIG-------NTFFKLPGGRLRPGEDEADGLKRLLTESLGR 123 (221)
T ss_pred HHEEEEEEEEEECCCCEEEEEEEC-------CEEEECCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 200003688740588708988507-------8777367875578853357799999998654
No 91
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=91.21 E-value=0.53 Score=26.23 Aligned_cols=39 Identities=33% Similarity=0.354 Sum_probs=31.6
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66069999848983999992688776668722012115078
Q gi|254780557|r 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINP 43 (160)
Q Consensus 3 R~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~ 43 (160)
|..++.++.|.+|+++|.||... +-+.|.|.||....+.
T Consensus 235 ~~~~~~~~~~~~~~~~l~kr~~~--gl~~gl~~fP~~e~~~ 273 (342)
T COG1194 235 RRFAAFLILNRDGEVLLEKRPEK--GLLGGLWCFPQFEDEA 273 (342)
T ss_pred HHEEEEEEECCCCCHHHHHCCCC--CCEECCCCCCCCCCCC
T ss_conf 00335778706853166627656--7221112056434332
No 92
>TIGR01084 mutY A/G-specific adenine glycosylase; InterPro: IPR005760 The DNA repair enzyme MutY plays an important role in the prevention of DNA mutations resulting from the presence of the oxidatively damaged lesion 7,8-dihydro-8-oxo-2'-deoxyguanosine (8-OxoG). 8-OxoG can mispair with 2'-deoxycytidine 5'-triphosphate or with 2'-deoxyadenosine triphosphate during DNA replication, forming C*8-oxoG and A*8-oxoG mispairs. Human MutY is responsible for recognition and removal of the inappropriately inserted adenine in an A=8-oxoG mispair. If unrepaired, the A=8-oxoG mispairs can result in deleterious C:G to A:T transversions. Multiple forms of mammalian MutY are formed by alternative splicing and locate to the nucleus or mitochondrion, where they have been shown to interact with several other proteins involved in the repair of DNA damage . The HhH-GPD domain within the protein binds the phosphate backbone of the substrate. This family represents bacterial MutY and a limited number of murine homologs. In rat, the Escherichia coli MutY DNA glycosylase homolog (MYH) is induced in response to mitochondrial DNA damage . ; GO: 0019104 DNA N-glycosylase activity, 0006284 base-excision repair, 0005622 intracellular.
Probab=88.15 E-value=0.6 Score=25.92 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=33.3
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 660699998489839999926887766687220121150788
Q gi|254780557|r 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQ 44 (160)
Q Consensus 3 R~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~g 44 (160)
|....++|++.+++|++.||... .-|.|.|.||.=...+|
T Consensus 241 ~~~~~l~l~~~d~~~~~~~r~~~--~l~gGLy~fP~~~~~kG 280 (297)
T TIGR01084 241 RTTYFLVLLNEDGEVLLEQRPEK--GLWGGLYCFPQFELEKG 280 (297)
T ss_pred HHEEEEEEEECCCCEEEEECCCC--CCCCCCCCCCHHHHHHH
T ss_conf 01012234414870576663766--41001003652553201
No 93
>KOG4432 consensus
Probab=75.15 E-value=7 Score=19.71 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=15.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 121150788888899999999983755222
Q gi|254780557|r 36 MPQGGINPQEDPLDAAYRELYEETGIKSIS 65 (160)
Q Consensus 36 ~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~ 65 (160)
+=+|-||+.-||.+-|.-|+.||+|.....
T Consensus 83 lc~g~idke~s~~eia~eev~eecgy~v~~ 112 (405)
T KOG4432 83 LCAGLIDKELSPREIASEEVAEECGYRVDP 112 (405)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCCH
T ss_conf 303312445598887679999971875884
No 94
>KOG2937 consensus
Probab=73.56 E-value=0.8 Score=25.21 Aligned_cols=34 Identities=35% Similarity=0.599 Sum_probs=30.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 8722012115078888889999999998375522
Q gi|254780557|r 31 LSLWQMPQGGINPQEDPLDAAYRELYEETGIKSI 64 (160)
Q Consensus 31 ~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~ 64 (160)
+.-|.||.|++.-||-+.++++|+..||+|....
T Consensus 263 ~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~ 296 (348)
T KOG2937 263 PENWTFPKGKISRGEKPRDASIRSTFEEPGFPFG 296 (348)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 6644576662235775555302204677677556
No 95
>TIGR00586 mutt mutator mutT protein; InterPro: IPR003561 MutT is a small bacterial protein (~12-15kDa) involved in the GO system responsible for removing an oxidatively damaged form of guanine (8-hydroxy- guanine or 7,8-dihydro-8-oxoguanine) from DNA and the nucleotide pool. 8-oxo-dGTP is inserted opposite dA and dC residues of template DNA with near equal efficiency, leading to A.T to G.C transversions. MutT specifically degrades 8-oxo-dGTP to the monophosphate, with the concomitant release of pyrophosphate. A short conserved N-terminal region of mutT (designated the MutT domain) is also found in a variety of other prokaryotic, viral, and eukaryotic proteins , , , . Recently, the generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family . The solution structure of the MutT enzyme has been solved by NMR . The structure is globular and compact, and contains a five-stranded mixed beta-sheet. The parallel portion of the sheet is sandwiched between two alpha-helices, forming an alpha+beta fold. ; GO: 0008413 8-oxo-78-dihydroguanine triphosphatase activity, 0006281 DNA repair.
Probab=70.47 E-value=0.2 Score=28.74 Aligned_cols=54 Identities=20% Similarity=0.195 Sum_probs=41.7
Q ss_pred EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99848983999992688776668722012115078888889999999998375522
Q gi|254780557|r 9 LILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSI 64 (160)
Q Consensus 9 vi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~ 64 (160)
+|-+-+|+.....|+.. ......-.||||+|+-||++..+++++|.|+.|+.+.
T Consensus 87 L~~~~~gep~~~~raad--a~~a~klefpggk~e~g~~~~w~~~~~L~~~~gfppa 140 (150)
T TIGR00586 87 LVQEWSGEPFGKERAAD--AHMANKLEFPGGKIEMGEEGEWVAITDLDEERGFPPA 140 (150)
T ss_pred EHHHHCCCCCHHHHHHH--HHHHHHHCCCCCEEECCCCCCEEEEEECCCCCCCCCC
T ss_conf 01433388102245555--6665431278860221798517898414556788840
No 96
>KOG1202 consensus
Probab=57.99 E-value=10 Score=18.69 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=26.6
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 2688776668722012115078888889999999998375522222
Q gi|254780557|r 22 RCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLL 67 (160)
Q Consensus 22 R~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~ 67 (160)
|++++. +....-.||-|. ..++++||+++|.|+++....
T Consensus 259 rtNTDG-fKEqGvTfP~G~------~Q~qLi~e~Yse~Gl~P~sv~ 297 (2376)
T KOG1202 259 RTNTDG-FKEQGVTFPSGD------MQEQLIRETYSEAGLNPESVV 297 (2376)
T ss_pred CCCCCC-HHHCCCCCCCCH------HHHHHHHHHHHHCCCCCCCEE
T ss_conf 557874-221386578807------999999999986198923279
No 97
>PRK07198 hypothetical protein; Validated
Probab=52.54 E-value=20 Score=17.12 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=35.3
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 69999848983999992688776668722012115078888889999999998375
Q gi|254780557|r 6 VGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI 61 (160)
Q Consensus 6 V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi 61 (160)
+..-|++++|.+.+.|-...+ .|-+||=--.-|- .+..+.|-|+|+||=
T Consensus 153 ~DG~il~~~g~~~VtK~AveP------VWYLPGvA~Rfg~-~E~~LRr~LFe~TgG 201 (418)
T PRK07198 153 PDGRVLLANGDVVVTKAAIEP------VWYLPGVAERFGV-SETDLRRTLFEQTGG 201 (418)
T ss_pred CCCEEECCCCCEEEEEEEECC------CCCCHHHHHHCCC-CHHHHHHHHHHHCCC
T ss_conf 788587478868899875233------2246225978099-789999999987279
No 98
>PRK04123 ribulokinase; Provisional
Probab=48.22 E-value=23 Score=16.72 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=38.1
Q ss_pred EEEEEEEC-CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC----CHHHHHHHHHHHHHCCCCCCC
Q ss_conf 06999984-898399999268877666872201211507888----888999999999837552222
Q gi|254780557|r 5 GVGILILN-QDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQE----DPLDAAYRELYEETGIKSISL 66 (160)
Q Consensus 5 ~V~vvi~n-~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gE----t~~~Aa~REl~EEtGi~~~~~ 66 (160)
+|-++||| ++|+++-.-....+.......-..+.|.+|.+- +....++|++.+..|+++..+
T Consensus 14 s~Ka~l~D~~~G~~~a~~~~~yp~~~~~~~~~p~~gw~Eqdp~~~w~a~~~~i~~~~~~~~~~~~~I 80 (542)
T PRK04123 14 SVRALLVDCATGEEIATSVEEYPRWVKGLYLDLPNNQFLQHPLDYIESLEEAVKAVLAESGVDPADV 80 (542)
T ss_pred CEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHHE
T ss_conf 1277899889996999998623554455545799893678999999999999999999759997896
No 99
>pfam03487 IL13 Interleukin-13.
Probab=39.38 E-value=18 Score=17.30 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=20.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 1211507888888999999999837
Q gi|254780557|r 36 MPQGGINPQEDPLDAAYRELYEETG 60 (160)
Q Consensus 36 ~PgG~ve~gEt~~~Aa~REl~EEtG 60 (160)
.-||--.+|-.|...|+||+.||+-
T Consensus 13 clgglasp~pvp~~~alkelieel~ 37 (43)
T pfam03487 13 CLGGLASPGPVPPSTALKELIEELS 37 (43)
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 8325578999897088999999998
No 100
>KOG3904 consensus
Probab=39.36 E-value=13 Score=18.20 Aligned_cols=29 Identities=31% Similarity=0.275 Sum_probs=19.2
Q ss_pred CCCCCCCCCC-CCCHHHHHHHHHHHHHCCC
Q ss_conf 2012115078-8888899999999983755
Q gi|254780557|r 34 WQMPQGGINP-QEDPLDAAYRELYEETGIK 62 (160)
Q Consensus 34 W~~PgG~ve~-gEt~~~Aa~REl~EEtGi~ 62 (160)
|.+-.|+-.+ .=....+|+||++||.|+-
T Consensus 11 p~~~~~~~~~~~i~lrltAire~feE~gil 40 (209)
T KOG3904 11 PEILSGGGTICRIALRLTAIRETFEEVGIL 40 (209)
T ss_pred HHHHCCCCCEEEEEECCHHHHHHHHHHHEE
T ss_conf 656425885265542147888777542246
No 101
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=38.31 E-value=25 Score=16.52 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=24.8
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 66069999848983999992688776668722012115078888889999999998
Q gi|254780557|r 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEE 58 (160)
Q Consensus 3 R~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EE 58 (160)
.|.||+||++.+|+|+-.=+ .-..| +--.+..|++.+.++
T Consensus 18 nP~VGaViv~~~g~Iis~g~------------~~~~g----~~HAE~~Ai~~a~~~ 57 (115)
T cd01284 18 NPPVGCVIVDDDGEIVGEGY------------HRKAG----GPHAEVNALASAGEK 57 (115)
T ss_pred CCCEEEEEEECCCEEEEEEE------------CCCCC----CHHHHHHHHHHHHHH
T ss_conf 99989999917998999884------------79899----740999999985231
No 102
>KOG0245 consensus
Probab=35.34 E-value=24 Score=16.63 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=13.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 220121150788888899999999983755
Q gi|254780557|r 33 LWQMPQGGINPQEDPLDAAYRELYEETGIK 62 (160)
Q Consensus 33 ~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~ 62 (160)
+|.+-. |+|.-|--+-|+|.+|-.
T Consensus 55 YWS~d~------edPhfAsQ~qVYedlg~~ 78 (1221)
T KOG0245 55 YWSHDS------EDPHFASQKQVYEDLGRE 78 (1221)
T ss_pred EECCCC------CCCCHHHHHHHHHHHHHH
T ss_conf 543788------897504388999887689
No 103
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=32.06 E-value=42 Score=15.20 Aligned_cols=56 Identities=16% Similarity=0.284 Sum_probs=37.0
Q ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCC-CCCC--C--CHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 069999848983999992688776668722012115-0788--8--8889999999998375522222
Q gi|254780557|r 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGG-INPQ--E--DPLDAAYRELYEETGIKSISLL 67 (160)
Q Consensus 5 ~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~-ve~g--E--t~~~Aa~REl~EEtGi~~~~~~ 67 (160)
+..++|||+++++.-.--... ..+ +|++| ||.+ | .....+++++.++.||++....
T Consensus 16 ssRaivfd~~g~iva~~q~e~-----~Q~--yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~ia 76 (499)
T COG0554 16 SSRAIVFDEDGNIVAIAQREF-----TQI--YPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEIA 76 (499)
T ss_pred CEEEEEECCCCCEEEEEEEEH-----HHC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 204899878888542341312-----210--7999831159999999999999999997299801358
No 104
>PRK09605 O-sialoglycoprotein endopeptidase/protein kinase; Reviewed
Probab=30.88 E-value=44 Score=15.08 Aligned_cols=53 Identities=25% Similarity=0.351 Sum_probs=37.3
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCH------HHHHHHHHHHHHCCCCCCCC
Q ss_conf 699998489839999926887766687220121150788888------89999999998375522222
Q gi|254780557|r 6 VGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDP------LDAAYRELYEETGIKSISLL 67 (160)
Q Consensus 6 V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~------~~Aa~REl~EEtGi~~~~~~ 67 (160)
.|+-|++.++++|--.+.. ..-|.|||-|-+.. ...++++..+|.|+....+.
T Consensus 14 ~gv~ivd~~g~il~n~~~~---------~~p~~GGvvPe~Aar~H~~~i~~vv~~aL~~A~i~~~dId 72 (536)
T PRK09605 14 TSAGIVDEDGEILANVSDP---------YKPEVGGIHPREAAEHHAEAIPKVIKEALEEAGIKKGDID 72 (536)
T ss_pred CEEEEECCCCCEEEEEEEE---------EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 1799992899885642131---------1599999990899999999999999999998499988898
No 105
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD; InterPro: IPR004794 This entry describes the riboflavin biosynthesis protein (ribD) as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region that is shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins that may be related to the riboflavin biosynthesis protein contain only the C-terminal domain.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0008835 diaminohydroxyphosphoribosylaminopyrimidine deaminase activity, 0009231 riboflavin biosynthetic process.
Probab=30.17 E-value=34 Score=15.69 Aligned_cols=39 Identities=18% Similarity=0.068 Sum_probs=30.2
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHH
Q ss_conf 606999984898399999268877666872201211507888-88899999999983
Q gi|254780557|r 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQE-DPLDAAYRELYEET 59 (160)
Q Consensus 4 ~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gE-t~~~Aa~REl~EEt 59 (160)
|.||.||+..||+|+-..-+ --+|+ -.+--|+|+..|-+
T Consensus 19 P~VGcViv~~ng~IVG~G~H-----------------~kaG~~HAE~~Al~~AG~~a 58 (393)
T TIGR00326 19 PLVGCVIVKKNGEIVGEGFH-----------------QKAGEPHAEIHALRQAGENA 58 (393)
T ss_pred CCEEEEEEECCCEEEEECCC-----------------CCCCCCHHHHHHHHHHHHHC
T ss_conf 86004898338758752466-----------------97788708999999976636
No 106
>PRK00047 glpK glycerol kinase; Provisional
Probab=29.92 E-value=45 Score=14.99 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=36.3
Q ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCC-CCCCCC--C--CHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 0699998489839999926887766687220121-150788--8--8889999999998375522222
Q gi|254780557|r 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQ-GGINPQ--E--DPLDAAYRELYEETGIKSISLL 67 (160)
Q Consensus 5 ~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~Pg-G~ve~g--E--t~~~Aa~REl~EEtGi~~~~~~ 67 (160)
+|-++|+|.+|+++-..+..++. -.|. |.+|.+ + .....++||+.++.|+++..+.
T Consensus 16 s~Ka~l~d~~G~~~a~~~~~~~~-------~~p~~g~~EqDp~~~W~~~~~~i~~~~~~~~i~~~~I~ 76 (498)
T PRK00047 16 SSRAIIFDHKGNIVSVAQKEFTQ-------IFPQPGWVEHDPNEIWASQLSVIAEALAKAGISPDQIA 76 (498)
T ss_pred EEEEEEECCCCCEEEEEEECCCC-------CCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHHEE
T ss_conf 03566996999999999852562-------05999857788999999999999999997499866779
No 107
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=26.84 E-value=52 Score=14.66 Aligned_cols=57 Identities=11% Similarity=0.151 Sum_probs=34.7
Q ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCC--CCCCCC-CC---HHHHHHHHHHHHHCCCCCCCC
Q ss_conf 0699998489839999926887766687220121--150788-88---889999999998375522222
Q gi|254780557|r 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQ--GGINPQ-ED---PLDAAYRELYEETGIKSISLL 67 (160)
Q Consensus 5 ~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~Pg--G~ve~g-Et---~~~Aa~REl~EEtGi~~~~~~ 67 (160)
++-++|+|.+|+++-..+.... ....|. |.+|.+ |. ....++|++.++.++....+.
T Consensus 14 s~Ka~l~d~~G~~la~~~~~~~------~~~~~~~pg~~E~D~~~~W~~~~~~i~~~~~~a~~~~~~I~ 76 (521)
T PRK10939 14 SIRAVIFDLNGNQIAVGQAEWT------HLAVPDVPGSMEFDLEKNWQLACQCIRQALQKANIPASAIA 76 (521)
T ss_pred CHHHEEEECCCCEEEEEEEECC------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEE
T ss_conf 1002069899999999984044------56789999973009999999999999999998299954779
No 108
>pfam00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region.
Probab=26.49 E-value=52 Score=14.63 Aligned_cols=45 Identities=18% Similarity=0.111 Sum_probs=25.3
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 660699998489839999926887766687220121150788888899999999983
Q gi|254780557|r 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEET 59 (160)
Q Consensus 3 R~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEt 59 (160)
++.||++|++.+|++|..=.. ..+.| -+.---.+.-|+|.+....
T Consensus 24 ~~~VGaviv~~~g~ii~~g~N-----------~~~~~-~~~~~HAE~~Ai~~a~~~~ 68 (104)
T pfam00383 24 NFPVGAVIVKNDGGIIATGYN-----------GENAG-YDPTIHAERNAIRNAGRLG 68 (104)
T ss_pred CCCEEEEEECCCCCEEEEEEC-----------EEECC-CCCCHHHHHHHHHHHHHHC
T ss_conf 997899999279979998857-----------07569-9963018999999999966
No 109
>KOG1794 consensus
Probab=25.28 E-value=55 Score=14.49 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=35.6
Q ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 0699998489839999926887766687220121150788888899999999983755222
Q gi|254780557|r 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSIS 65 (160)
Q Consensus 5 ~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~ 65 (160)
|--+||+++.+++|----.... .+|..| .+.=-+-.++++||.+|+-|++.+.
T Consensus 14 ~s~~Vivd~~~~~~~~a~~~~T-----nh~~ig---~~~~~~rie~~i~~A~~k~g~d~~~ 66 (336)
T KOG1794 14 CSRLVIVDEDGTILGRAVGGGT-----NHWLIG---STTCASRIEDMIREAKEKAGWDKKG 66 (336)
T ss_pred EEEEEEECCCCCEEEEEECCCC-----CCCCCC---CHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 2489998899887667512654-----444578---4689999999999988663998457
No 110
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme; InterPro: IPR012838 Members of this family are iron-sulphur proteins with a radical-SAM domain. A single glycine residue in 2.3.1.54 from EC, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of a proton from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue .; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity.
Probab=23.43 E-value=46 Score=14.94 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=27.7
Q ss_pred CCCCCCCCCCC--CCCCCCHHHH-----HHHHHHHHHCCCCCC
Q ss_conf 68722012115--0788888899-----999999983755222
Q gi|254780557|r 30 HLSLWQMPQGG--INPQEDPLDA-----AYRELYEETGIKSIS 65 (160)
Q Consensus 30 ~~g~W~~PgG~--ve~gEt~~~A-----a~REl~EEtGi~~~~ 65 (160)
+..+|..-||| |..||...|+ ..+++|+|.||..-.
T Consensus 59 yk~f~~~sGGGvT~SGGEPllQ~~F~~~~f~~cK~~~GiHTcl 101 (243)
T TIGR02493 59 YKDFFKASGGGVTVSGGEPLLQPEFVLELFKACKKELGIHTCL 101 (243)
T ss_pred HHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9988720799589868950201699999999999856983887
No 111
>TIGR01311 glycerol_kin glycerol kinase; InterPro: IPR005999 Glycerol kinase (2.7.1.30 from EC) is a bacterial sugar kinase which catalyzes the Mg-ATP-dependent phosphorylation of glycerol to yield glycerol 3-phosphate. The enzyme from Escherichia coli is an allosteric regulatory enzyme whose activity is inhibited by fructose 1,6-bisphosphate (FBP) and the glucose-specific phosphocarrier of the phosphoenolpyruvate:glycose phosphotransferase system, IIA(Glc), structural studies suggest a nucleophilic in-line transfer mechanism for the ATP-dependent phosphorylation of glycerol by glycerol kinase .; GO: 0004370 glycerol kinase activity, 0006072 glycerol-3-phosphate metabolic process.
Probab=21.73 E-value=65 Score=14.08 Aligned_cols=59 Identities=15% Similarity=0.284 Sum_probs=44.6
Q ss_pred EEEEEEEC-CCCCEEEEEECCCCCCCCCCCCCCCCCC-CCC--CC--CHHHHHHHHHHHHHCCC---CCCCCCCC
Q ss_conf 06999984-8983999992688776668722012115-078--88--88899999999983755---22222013
Q gi|254780557|r 5 GVGILILN-QDDLVWVGRRCFHDNNKHLSLWQMPQGG-INP--QE--DPLDAAYRELYEETGIK---SISLLGQG 70 (160)
Q Consensus 5 ~V~vvi~n-~~~~iLl~kR~~~~~~~~~g~W~~PgG~-ve~--gE--t~~~Aa~REl~EEtGi~---~~~~~~~~ 70 (160)
+..+|||| +++++.-.....+.. -||.-| ||. -| .....+++|..+.+|++ +..+....
T Consensus 12 S~R~I~Fda~~g~~V~~~Q~E~~Q-------~fP~~GWVEHDP~EIw~~~~~~~~~a~~k~~~~g~~~~~I~AIG 79 (518)
T TIGR01311 12 SSRAIVFDAKDGNIVASHQKEFTQ-------IFPKPGWVEHDPMEIWESVLSVIAEALAKAGIKGISPDDIAAIG 79 (518)
T ss_pred EEEEEEEECCCCCEEEECCEEEEE-------ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEC
T ss_conf 104889725557662231434576-------21788971038699999999999999998336897875512520
No 112
>pfam08918 PhoQ_Sensor PhoQ Sensor. The PhoQ Sensor is required for the virulence of various Gram-negative bacteria by allowing interaction of PhoPQ with the intracellular membrane, resulting in remodelling of the bacterial cell surface and subsequent bacterial resistance to host antimicrobial peptides. The domain contains a major flat acidic surface, which binds to at least 3 calcium ions, neutralising the domain's negative charge and allowing interaction with the negatively charged membrane.
Probab=21.10 E-value=67 Score=14.00 Aligned_cols=17 Identities=18% Similarity=0.349 Sum_probs=14.3
Q ss_pred EEEECCCCCEEEEEECC
Q ss_conf 99984898399999268
Q gi|254780557|r 8 ILILNQDDLVWVGRRCF 24 (160)
Q Consensus 8 vvi~n~~~~iLl~kR~~ 24 (160)
++|+|++|++|.-+|.-
T Consensus 77 v~IYde~G~lLW~qr~v 93 (180)
T pfam08918 77 VLIYDENGKLLWRQRHV 93 (180)
T ss_pred EEEECCCCCEEEECCCC
T ss_conf 99996998488754655
No 113
>pfam11673 DUF3269 Protein of unknown function (DUF3269). This family of proteins has no known function.
Probab=20.03 E-value=71 Score=13.87 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=30.8
Q ss_pred EECCCC--CEEEEEECCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHH--------HHHHCCCCCC
Q ss_conf 984898--3999992688776668722012115078-888889999999--------9983755222
Q gi|254780557|r 10 ILNQDD--LVWVGRRCFHDNNKHLSLWQMPQGGINP-QEDPLDAAYREL--------YEETGIKSIS 65 (160)
Q Consensus 10 i~n~~~--~iLl~kR~~~~~~~~~g~W~~PgG~ve~-gEt~~~Aa~REl--------~EEtGi~~~~ 65 (160)
+.|.+| +|++.|+.+.-+ ..-.|||-+... +.--..+-..|. .||+|+.+.+
T Consensus 8 LYr~dGtE~ikv~k~kdnvn----~v~~ltgaHFS~e~k~mTds~lk~fKa~hgLlyeeELGlQ~tI 70 (73)
T pfam11673 8 LYRADGTEKIKVAKEKDNVN----NVRGLTGAHFSHEDKFMTDSELKEFKAIHGLLYEEELGLQITI 70 (73)
T ss_pred EECCCCCEEEEEEEECCCCC----EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 88579961368899428973----0401562222330224207788888888756788873760476
Done!