HHsearch results for GI: 254780557 and protein with PDBid: 2kdv_A
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=100.00 E-value=2.7e-36 Score=230.54 Aligned_cols=146 Identities=38% Similarity=0.704 Sum_probs=115.7
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC--CCCEEECCC
Q ss_conf 566069999848983999992688776668722012115078888889999999998375522222013--661241163
Q gi|254780557|r 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQG--DSYIQYDFP 79 (160)
Q Consensus 2 yR~~V~vvi~n~~~~iLl~kR~~~~~~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGi~~~~~~~~~--~~~~~~~~~ 79 (160)
||+||||+|+|++|+|||+||++ .|.|+||||+||+|||+.+||+||++||||+++....... .....+..+
T Consensus 7 yR~~Vg~vi~n~~gkvLl~kR~~------~g~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~ 80 (164)
T 2kdv_A 7 YRPNVGIVICNRQGQVMWARRFG------QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLP 80 (164)
T ss_dssp EEEEEEEEEECTTSEEEEEEETT------CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECC
T ss_pred CCCEEEEEEEECCCEEEEEEECC------CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC
T ss_conf 87618999996899299999889------991899916607998989999999998756454444312688043024576
Q ss_pred C---CCCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCHHHHHHCCHHCCHHHHHHHHHHHHHHHHC
Q ss_conf 2---2200001123443379999804754301057888888860037603789976300001379999999999998605
Q gi|254780557|r 80 A---HCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDFKKEAYRQVVADFAYLIKS 156 (160)
Q Consensus 80 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~E~~~~~Wv~~~el~~~i~~fk~~vy~~~l~~l~~~i~~ 156 (160)
. .........++...+|.+.+.+...+++... ....|+++|+|++++|++++++|||+++|++++++|+++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~E~~~~~W~~~~el~~~~~~fk~~v~~~~l~~f~~~i~~ 157 (164)
T 2kdv_A 81 KRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQT---SSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMS 157 (164)
T ss_dssp TTTCCTTSSSCCCEEEEEEEEEEESSCGGGCCSCS---SSSCSEEEEEEEETTTGGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCC---CCCCHHEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 42010003565223079999999935865303577---998331574867799987751110699999999999999998