RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780557|ref|YP_003064970.1| dinucleoside polyphosphate hydrolase [Candidatus Liberibacter asiaticus str. psy62] (160 letters) >2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A Length = 164 Score = 121 bits (304), Expect = 8e-29 Identities = 56/160 (35%), Positives = 81/160 (50%), Gaps = 14/160 (8%) Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI 61 YR VGI+I N+ V RR + WQ PQGGINP E A YREL+EE G+ Sbjct: 7 YRPNVGIVICNRQGQVMWARR--FGQHS----WQFPQGGINPGESAEQAMYRELFEEVGL 60 Query: 62 KSISLLGQGDSY--IQYDFPAHCIQEN---GYVGQMQKWFAFRFQGLTSEICVDRTAYGY 116 + + ++Y P ++ + +GQ QKWF + +EI + ++ Sbjct: 61 SRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSS--- 117 Query: 117 ESEFDAWTWVSLWDTPNIVVDFKKEAYRQVVADFAYLIKS 156 EFD W WVS W VV FK++ YR+V+ +FA ++ S Sbjct: 118 TPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMS 157 >1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Length = 165 Score = 115 bits (288), Expect = 5e-27 Identities = 58/156 (37%), Positives = 87/156 (55%), Gaps = 12/156 (7%) Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI 61 YRR VGI ++N D ++ R + WQMPQGGI+ EDP +AA REL EETG+ Sbjct: 13 YRRNVGICLMNNDKKIFAASRLDIPD-----AWQMPQGGIDEGEDPRNAAIRELREETGV 67 Query: 62 KSISLLGQGDSYIQYDFPAHCIQE------NGYVGQMQKWFAFRFQGLTSEICVDRTAYG 115 S ++ + ++ YDFP ++ + + GQ QKWF F+F G EI + Sbjct: 68 TSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSE 127 Query: 116 YESEFDAWTWVSLWDTPNIVVDFKKEAYRQVVADFA 151 + EF W+WV+ ++ V+FKK Y++V++ FA Sbjct: 128 -KPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFA 162 >3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural genomics, structural genomics consortium; HET: FLC; 1.70A {Homo sapiens} Length = 199 Score = 72.1 bits (176), Expect = 6e-14 Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 19/152 (12%) Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI 61 ++ GV + ++ + + D NK ++W+ P G P+ED D A RE++EETGI Sbjct: 25 HQVGVAGAVFDESTRKILVVQ---DRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGI 81 Query: 62 KSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFD 121 K Q+ P G G+ + R + + I + E Sbjct: 82 K-SEFRSVLSIRQQHTNP-------GAFGKSDMYIICRLKPYSFTINFC------QEECL 127 Query: 122 AWTWVSLWDTPNI--VVDFKKEAYRQVVADFA 151 W+ L D R ++ + Sbjct: 128 RCEWMDLNDLAKTENTTPITSRVARLLLYGYR 159 >3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II(PSI II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis ATCC15703} Length = 364 Score = 68.7 bits (167), Expect = 5e-13 Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 19/145 (13%) Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSL--------WQMPQGGINPQEDPLDAAY 52 ++R G I N + ++ + + W P+G + E AA Sbjct: 10 VWRWKAGSDIANDPAIASSKSAQEQLDSIEVCIVHRPKYDDWSWPKGKLEQNETHRHAAV 69 Query: 53 RELYEETGIKSISLLGQGDSYIQYDFPAHCIQE------NGYVGQMQKWFAFRFQGLTSE 106 RE+ EETG LG ++Y + W A +E Sbjct: 70 REIGEETGSPVK--LGPYLCEVEYPLSEEGKKTRHSHDCTADTKHTLYWMAQPISADDAE 127 Query: 107 ICVDRTAYGY---ESEFDAWTWVSL 128 +D + E + WVS+ Sbjct: 128 HLLDAFGPVHRADVGEINDIVWVSV 152 >3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165 Score = 66.5 bits (162), Expect = 3e-12 Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 11/129 (8%) Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLS-LWQMPQGGINPQEDPLDAAYRELYEET 59 M +R + ++ D + + DN W + GG+ P E +A RE+ EE Sbjct: 25 MRQRTIVCPLIQNDGCYLLCKM--ADNRGVFPGQWALSGGGVEPGERIEEALRREIREEL 82 Query: 60 GIKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESE 119 G + + L + D + + F +IC++ E Sbjct: 83 GEQ-LILSDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANRDICIND-------E 134 Query: 120 FDAWTWVSL 128 F + WV Sbjct: 135 FQDYAWVKP 143 >1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159 Score = 63.7 bits (154), Expect = 2e-11 Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 20/154 (12%) Query: 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLS-LWQMPQGGINPQEDPLDAAYRELYEETGI 61 R G+++LN+ + + + + + LW +P G + E+P DAA RE EETG+ Sbjct: 13 LRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGL 72 Query: 62 K--SISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESE 119 + + LG FP G + + + + E Sbjct: 73 RVRPVKFLGA----YLGRFPD---------GVLILRHVWLAEPEPGQTLAPAF----TDE 115 Query: 120 FDAWTWVSLWDTPNIVVDFKKEAYRQVVADFAYL 153 ++VS D + + Y+ + L Sbjct: 116 IAEASFVSREDFAQLYAAGQIRMYQTKLFYADAL 149 >2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271 Score = 63.1 bits (153), Expect = 3e-11 Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 30/159 (18%) Query: 2 YRRGV---GILILNQD-DLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYE 57 Y+ + G ++L+ + + + W P+G I+ E +D A RE+YE Sbjct: 97 YKTRIPVRGAIMLDMSMQQCVLVKGWKASSG-----WGFPKGKIDKDESDVDCAIREVYE 151 Query: 58 ETGIKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYE 117 ETG S + + + GQ + + L + Sbjct: 152 ETGFDCSSRINP-----------NEFIDMTIRGQNVRLYIIPGISLDTRFESR-----TR 195 Query: 118 SEFDAWTWVSLWDTPNIVVDFKKEAYRQVVADFAYLIKS 156 E W +L D P FKK + + F Y++ Sbjct: 196 KEISKIEWHNLMDLPT----FKKNKPQTMKNKF-YMVIP 229 >3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} Length = 153 Score = 62.0 bits (150), Expect = 6e-11 Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 17/143 (11%) Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60 ++ V +I N+ + W +P G I E P +A RE++EETG Sbjct: 19 IFXPSVAAVIKNEQGEILFQYP-------GGEYWSLPAGAIELGETPEEAVVREVWEETG 71 Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120 +K + + + F + + E+ + E Sbjct: 72 LKVQVK----KQKGVFGGKEYRYTYSNGDEVEYIVVVFECEVTSGELRSI------DGES 121 Query: 121 DAWTWVSLWDTPNIVVDFKKEAY 143 + SL + P + + + + + Sbjct: 122 LKLQYFSLSEKPPLALPYPDKIF 144 >2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352 Score = 59.8 bits (144), Expect = 3e-10 Identities = 27/141 (19%), Positives = 44/141 (31%), Gaps = 10/141 (7%) Query: 10 ILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQ 69 ++ +D + + +R + LW +P G + E A REL+EET I Sbjct: 214 LVIVNDHILMVQR---KAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLA 270 Query: 70 GDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLW 129 + F G F F EI + W+SL Sbjct: 271 IAKRCEKVFDYPDRSVRGRTISHVGLFVFDQWPSLPEINAA-------DDAKDVKWISLG 323 Query: 130 DTPNIVVDFKKEAYRQVVADF 150 + D E + Q++ Sbjct: 324 SNIKNICDRMLEDHYQIITIL 344 >2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneopterin triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150 Score = 56.4 bits (135), Expect = 3e-09 Identities = 28/156 (17%), Positives = 49/156 (31%), Gaps = 15/156 (9%) Query: 1 MYRRGVG---ILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYE 57 +Y+R V ++ V + +R WQ G + E AA RE+ E Sbjct: 5 VYKRPVSILVVIYAQDTKRVLMLQR-----RDDPDFWQSVTGSVEEGETAPQAAMREVKE 59 Query: 58 ETGIK-SISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGY 116 E I L D +F + Y + + F + + Sbjct: 60 EVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTRNTESWF-----CLALPHERQIV 114 Query: 117 ESEFDAWTWVSLWDTPNIVV-DFKKEAYRQVVADFA 151 +E A+ W+ + ++A Q V + A Sbjct: 115 FTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINAA 150 >2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrolase; two individual domains; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341 Score = 56.3 bits (135), Expect = 3e-09 Identities = 30/143 (20%), Positives = 47/143 (32%), Gaps = 16/143 (11%) Query: 10 ILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI--KSISLL 67 ++ Q V + RR L L +P G I E ++ REL EET + L Sbjct: 209 VVVQAGHVLMVRR---QAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLR 265 Query: 68 GQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVS 127 G +D P + A+ Q E+ + + W+S Sbjct: 266 GSIVDSHVFDAP------GRSLRGRTITHAYFIQLPGGELPAVKGG----DDAQKAWWMS 315 Query: 128 LWDTPNIVVDFKKEAYRQVVADF 150 L D E + Q++ F Sbjct: 316 LADLYAQEEQI-YEDHFQIIQHF 337 >3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197 Score = 55.7 bits (133), Expect = 5e-09 Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 7/129 (5%) Query: 29 KHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQG-DSYIQYDFPAHCIQENG 87 + W G + ++D L A +EL EETG+K+ + L + H + Sbjct: 66 NIYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGKY 125 Query: 88 YVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVV-DFKKEAYRQV 146 + + + E + + E E W+ + Y ++ Sbjct: 126 VSSHLHLNLTYLIECSEDETLMLK-----EDENSGVMWIPFNEISKYCSEPHMIPIYEKL 180 Query: 147 VADFAYLIK 155 + K Sbjct: 181 INKLKTQSK 189 >1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160 Score = 55.2 bits (132), Expect = 6e-09 Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 11/129 (8%) Query: 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSI 64 + ++ N +G+R N W +P G + E A R E G++ Sbjct: 20 SLDFIVENSRGEFLLGKR---TNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLP 76 Query: 65 SLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWT 124 GQ Q+ + + + + F FR + + + D + Sbjct: 77 ITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLP--------DEQHDDYR 128 Query: 125 WVSLWDTPN 133 W++ Sbjct: 129 WLTSDALLA 137 >2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146 Score = 54.1 bits (129), Expect = 2e-08 Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 23/139 (16%) Query: 6 VGILILNQD-DLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSI 64 G I N++ + + + +++ W P+G I+ E+ +D RE+ EE G Sbjct: 7 RGAAIFNENLSKILLVQG--TESDS----WSFPRGKISKDENDIDCCIREVKEEIGFDLT 60 Query: 65 SLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWT 124 + + E G+ K F +E D Sbjct: 61 DYID-----------DNQFIERNIQGKNYKIFLISGVSEVFNFKPQ-----VRNEIDKIE 104 Query: 125 WVSLWDTPNIVVDFKKEAY 143 W + + Y Sbjct: 105 WFDFKKISKTMYKSNIKYY 123 >1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative nudix hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156 Score = 53.7 bits (128), Expect = 2e-08 Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 22/134 (16%) Query: 6 VGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI--KS 63 V +L ++ V + + K L ++ P G + E P++A RE EETGI + Sbjct: 3 VTSGVLVENGKVLLVKH------KRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEP 56 Query: 64 ISLLGQGDSYIQYDFPAHCIQENGYV---GQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120 I + P + V + F + + Sbjct: 57 IGFTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRV-----------GGDL 105 Query: 121 DAWTWVSLWDTPNI 134 W+ + + I Sbjct: 106 KNGEWIDVREIDRI 119 >2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A* Length = 134 Score = 53.5 bits (128), Expect = 2e-08 Identities = 21/150 (14%), Positives = 53/150 (35%), Gaps = 26/150 (17%) Query: 6 VGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSIS 65 G ++ +++ + ++W P+G I P E P + A RE++EETG+K Sbjct: 7 AGGVLFKDGEVLLIKTP--------SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEI 58 Query: 66 LLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTW 125 L + + + + K++ +++ E + Sbjct: 59 L------DYIGEIHYWYTLKGERIFKTVKYYLMKYKEGEPRP---------SWEVKDAKF 103 Query: 126 VSLWDTPNIVVDFKKEAYRQVVADFAYLIK 155 + + ++ K + +++ L + Sbjct: 104 FPIKEAKKLL---KYKGDKEIFEKALKLKE 130 >1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171 Score = 53.5 bits (128), Expect = 2e-08 Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 19/129 (14%) Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQ-EDPLDAAYRELYEET 59 R V + N +W+ RR + + + GG E +A RE EE Sbjct: 32 ERVRVVNAFLRNSQGQLWIPRRSPSKSL-FPNALDVSVGGAVQSGETYEEAFRREAREEL 90 Query: 60 GIKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESE 119 ++ +L + + + + V +++ F ++ Sbjct: 91 NVEIDALSWRPLAS--FSPFQTTLSSFMCVYELRSDATPIFN---------------PND 133 Query: 120 FDAWTWVSL 128 W++ Sbjct: 134 ISGGEWLTP 142 >1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190 Score = 53.1 bits (127), Expect = 3e-08 Identities = 24/130 (18%), Positives = 37/130 (28%), Gaps = 19/130 (14%) Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLS-LWQMPQGG-INPQEDPLDAAYRELYEET 59 + N + V RR + K +W G E DA R E Sbjct: 31 LHLAFSSWLFNAKGQLLVTRR--ALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYEL 88 Query: 60 GIKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQG-LTSEICVDRTAYGYES 118 G++ I DF +G V + F TS + ++ + Sbjct: 89 GVEITPP-----ESIYPDFRYRATDPSGIV---ENEVCPVFAARTTSALQIN------DD 134 Query: 119 EFDAWTWVSL 128 E + W L Sbjct: 135 EVMDYQWCDL 144 >1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, hydrolase, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus HB8} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126 Score = 52.7 bits (126), Expect = 4e-08 Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 26/131 (19%) Query: 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSI 64 G G ++ N V + R + W P+G P E +AA RE++EETG+++ Sbjct: 4 GAGGVVFNAKREVLLLRD-------RMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAE 56 Query: 65 SLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWT 124 + V + WF R +G E Sbjct: 57 ---------VLLPLYPTRYVNPKGVEREVHWFLMRGEGAPRL----------EEGMTGAG 97 Query: 125 WVSLWDTPNIV 135 W S + ++ Sbjct: 98 WFSPEEARALL 108 >3dku_A Putative phosphohydrolase; nudix hydrolase, ORF153, YMFB, nucleoside triphosphatase; 2.69A {Escherichia coli apec O1} Length = 153 Score = 52.0 bits (124), Expect = 6e-08 Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 22/151 (14%) Query: 1 MYRRGVGI-LILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEET 59 M++ V + +++ + V + LW P G + E ++AA REL+EET Sbjct: 1 MFKPHVTVACVVHAEGKFLVVEETINGKA----LWNQPAGHLEADETLVEAAARELWEET 56 Query: 60 GIKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESE 119 GI + + F F + +S+ Sbjct: 57 GISAQPQHFIRMHQWIAPDKTPFL-----------RFLFAIELEQICPTQPH-----DSD 100 Query: 120 FDAWTWVSLWDTPNIVVDFKKEAYRQVVADF 150 D WVS + + + + + + Sbjct: 101 IDCCRWVSAEEILQA-SNLRSPLVAESIRCY 130 >3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163 Score = 51.5 bits (123), Expect = 8e-08 Identities = 34/153 (22%), Positives = 52/153 (33%), Gaps = 37/153 (24%) Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60 + RR I I D ++ R + +P G N E A RE+ EETG Sbjct: 15 LARRATAI-IEMPDGVLVTASR--------GGRYNLPGGKANRGELRSQALIREIREETG 65 Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120 ++ S+L D F AH + + QG + +E Sbjct: 66 LRINSMLYLFD--HITPFNAHKV------------YLCIAQG---QPKPQ-------NEI 101 Query: 121 DAWTWVSLWDTPNIVVDFKKEAYRQVVADFAYL 153 + VS DT +D R ++ +A L Sbjct: 102 ERIALVSSPDTD---MDL-FVEGRAILRRYARL 130 >2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, protein structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis V583} SCOP: d.113.1.1 Length = 148 Score = 51.0 bits (121), Expect = 1e-07 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 26/150 (17%) Query: 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG-- 60 R I++ ++ V + N + +P G I E +A +RE+ EE G Sbjct: 18 RYAAYIIVSKPENNTMVLVQ--APNGA----YFLPGGEIEGTETKEEAIHREVLEELGIS 71 Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120 ++ LG+ D Y + GY W Sbjct: 72 VEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSE---------------PLERT 116 Query: 121 DAWTWVSLWDTPNIVVDFKKEAYRQVVADF 150 + WV+ + ++ K+ ++R V + Sbjct: 117 NTLHWVAPEEAVRLL---KRGSHRWAVEKW 143 >1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153 Score = 51.0 bits (121), Expect = 1e-07 Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 21/156 (13%) Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60 ++RR + + N + + D H W P+G + P ED L+ A R EE G Sbjct: 15 IFRRCLIPKVDNNAIEFLLLQA--SDGIHH---WTPPKGHVEPGEDDLETALRATQEEAG 69 Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120 I++ L + ++ A + + L E Sbjct: 70 IEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRL-------------SHEH 116 Query: 121 DAWTWVSLWDTPNIVVDFKKEAYRQVVADFAYLIKS 156 A+ W+ L + + + + + + + + S Sbjct: 117 QAYRWLGLEEACQLA---QFKEMKAALQEGHQFLCS 149 >1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138 Score = 50.6 bits (120), Expect = 1e-07 Identities = 28/154 (18%), Positives = 46/154 (29%), Gaps = 25/154 (16%) Query: 1 MYRRGVGILILNQDD---LVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYE 57 M + G++I + + + + + W P+G ++P ED AA RE E Sbjct: 1 MVVKAAGLVIYRKLAGKIEFLLLQASYPPH-----HWTPPKGHVDPGEDEWQAAIRETKE 55 Query: 58 ETGIKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYE 117 E I L I D E + K++ + Sbjct: 56 EANITKEQL------TIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQL--------S 101 Query: 118 SEFDAWTWVSLWDTPNIVVDFKKEAYRQVVADFA 151 E W W L D I ++ F+ Sbjct: 102 HEHQNWKWCELEDAIKIA---DYAEMGSLLRKFS 132 >2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153 Score = 50.6 bits (120), Expect = 1e-07 Identities = 23/146 (15%), Positives = 38/146 (26%), Gaps = 19/146 (13%) Query: 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSI 64 V +I D + V P G + P E + A RE+ EETG Sbjct: 10 TVAAVIEQDDKYLLVEEI----PRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHS-- 63 Query: 65 SLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWT 124 I + F F G ++ ++ Sbjct: 64 ----------FLPEVLTGIYHWTCASNGTTYLRFTFSG---QVVSFDPDRKLDTGIVRAA 110 Query: 125 WVSLWDTPNIVVDFKKEAYRQVVADF 150 W S+ + + Q + D+ Sbjct: 111 WFSIDEIRAKQAMHRTPLVMQCIEDY 136 >3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159 Score = 50.3 bits (119), Expect = 2e-07 Identities = 23/139 (16%), Positives = 35/139 (25%), Gaps = 22/139 (15%) Query: 6 VGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSIS 65 V + I+ +D ++ + G I E P +A RE EE G+ Sbjct: 9 VSVFIVCKDKVLLHLHKKAK-------KMLPLGGHIEVNELPEEACIREAKEEAGLNVTL 61 Query: 66 L---------LGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGY 116 P H I + F + + E + Sbjct: 62 YNPIDINLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPE------ 115 Query: 117 ESEFDAWTWVSLWDTPNIV 135 E W S D N Sbjct: 116 IGESKILKWYSKEDLKNAH 134 >1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* Length = 292 Score = 50.0 bits (119), Expect = 2e-07 Identities = 17/122 (13%), Positives = 30/122 (24%), Gaps = 10/122 (8%) Query: 29 KHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSY----IQYDFPAHCIQ 84 K W +P G ++P E RE EE + + H + Sbjct: 147 KDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVI 206 Query: 85 ENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYE------SEFDAWTWVSLWDTPNIVVDF 138 GYV + + + + WV + D + Sbjct: 207 YKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASH 266 Query: 139 KK 140 + Sbjct: 267 SQ 268 >1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A Length = 209 Score = 49.6 bits (118), Expect = 3e-07 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 4/73 (5%) Query: 5 GVGILILNQDD----LVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60 +L + L+ R +D ++ L +M G I E D A RE EE G Sbjct: 59 AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAG 118 Query: 61 IKSISLLGQGDSY 73 + Sbjct: 119 LIVKRTKPVLSFL 131 >3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188 Score = 49.6 bits (118), Expect = 4e-07 Identities = 23/134 (17%), Positives = 40/134 (29%), Gaps = 20/134 (14%) Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60 M + V I+ D V + ++ W P G + E L+ RE +EETG Sbjct: 1 MSLQRVTNCIVVDHDQVLLLQKPRRG------WWVAPGGKMEAGESILETVKREYWEETG 54 Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120 I + + + + G + F F+ E+ S Sbjct: 55 ITVKNP----ELKGIFSMVIF---DEGKIVSEWMLFTFKATEHEGEMLKQ-------SPE 100 Query: 121 DAWTWVSLWDTPNI 134 W + + Sbjct: 101 GKLEWKKKDEVLEL 114 >1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129 Score = 49.3 bits (117), Expect = 4e-07 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Query: 1 MYRRGVGI-LILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEET 59 M + + + +I N+++ +++ RR + + + P G I E P A REL EE Sbjct: 1 MKKLQIAVGIIRNENNEIFITRR--AADAHMANKLEFPGGKIEMGETPEQAVVRELQEEV 58 Query: 60 GIK 62 GI Sbjct: 59 GIT 61 >2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A Length = 194 Score = 48.9 bits (116), Expect = 5e-07 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 32/152 (21%) Query: 2 YRRGVGILILNQDD---LVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEE 58 Y++ L + ++ V +H W +P GG+ P+E+P AA RE+ EE Sbjct: 39 YKKRAACLCFRSESEEEVLLVSSS------RHPDRWIVPGGGMEPEEEPSVAAVREVCEE 92 Query: 59 TGIKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYES 118 G+K G Q + + + + + Sbjct: 93 AGVKGTLGRLVGIFENQERKHRTYV------------YVLIVTEVLEDWEDS------VN 134 Query: 119 EFDAWTWVSLWDTPNIVVDFKKEAYRQVVADF 150 W + D ++ + ++ V A + Sbjct: 135 IGRKREWFKIEDAIKVL-----QYHKPVQASY 161 >1iry_A HMTH1; nudix motif(G37-L59), hydrolase; NMR {Homo sapiens} SCOP: d.113.1.1 Length = 156 Score = 48.1 bits (114), Expect = 1e-06 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 5/76 (6%) Query: 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKS 63 R ++++ Q V +G + W G + E D A REL EE+G+ Sbjct: 5 RLYTLVLVLQPQRVLLGMK---KRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTV 61 Query: 64 ISLLGQGDSYIQYDFP 79 +L G I ++F Sbjct: 62 DALHKVG--QIVFEFV 75 >3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.20A {Listeria innocua} Length = 187 Score = 47.8 bits (113), Expect = 1e-06 Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 19/130 (14%) Query: 28 NKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCIQENG 87 N W +P G ++ E AA REL EET + D + + Sbjct: 63 NMEGGKWAVPGGFVDENESAEQAAERELEEETSLT--------DIPLIPFGVFDKPGRDP 114 Query: 88 YVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDFK-----KEA 142 + + F E + + + + + F K+A Sbjct: 115 RGWIISRAFYAIVPPEALEKRAA------GDDAAEIGLFPMTEALELPLAFDHLDMLKKA 168 Query: 143 YRQVVADFAY 152 + + +F Sbjct: 169 FSAITEEFLL 178 >3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima} Length = 211 Score = 47.7 bits (113), Expect = 1e-06 Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 32/158 (20%) Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHL-SLWQMPQGG-------INPQEDPLDAAYR 53 ++ + +++ D V + +R + K L +L+ + GG P+E L R Sbjct: 66 TKQVIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLER 125 Query: 54 ELYEETGI--KSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDR 111 E+ EE + + + LG I V ++ F +G + Sbjct: 126 EVNEEVDVSLRELEFLG----LINSSTT--------EVSRVHLGALFLGRGKFFSVK--- 170 Query: 112 TAYGYESEFDAWTWVSLWDTPNIVVDFKKEAYRQVVAD 149 E + W + L + E + ++ A Sbjct: 171 -----EKDLFEWELIKLEELEKFSGVM--EGWSKISAA 201 >3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171 Score = 47.7 bits (113), Expect = 1e-06 Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 19/128 (14%) Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60 + + V +++ + ++ V ++ + W +P G + E +A RE+ EETG Sbjct: 21 IMQVRVTGILIEDEKVLLVKQKVANR------DWSLPGGRVENGETLEEAMIREMREETG 74 Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120 ++ D P F + + EI + + + Sbjct: 75 LEVK----IKKLLYVCDKP--------DASPSLLHITFLLERIEGEITLPSNEFD-HNPI 121 Query: 121 DAWTWVSL 128 V + Sbjct: 122 HDVQMVPI 129 >1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine diphospho-ribose, RV1700; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Length = 207 Score = 47.3 bits (112), Expect = 2e-06 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 18/128 (14%) Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQ-EDPLDAAYRELYEETG 60 + V I+ ++ + + + + H + L W++P G ++ E P A REL EE G Sbjct: 42 HFGAVAIVAMDDNGNIPMVYQYRHTYGRRL--WELPAGLLDVAGEPPHLTAARELREEVG 99 Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120 ++ + A + + GL V R +E Sbjct: 100 LQ-----ASTWQVLVDLDTAPGFSDE-------SVRVYLATGLRE---VGRPEAHHEEAD 144 Query: 121 DAWTWVSL 128 W + Sbjct: 145 MTMGWYPI 152 >3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156 Score = 47.0 bits (111), Expect = 2e-06 Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 25/147 (17%) Query: 6 VGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI--KS 63 V + L++ D V + + + W +P G + P E ++A RE+ EE G+ + Sbjct: 23 VLAVFLSEQDEVLLIQE---AKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEP 79 Query: 64 ISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAW 123 +LL + + F F + + + A ++E Sbjct: 80 ETLLSVEERGPSW-----------------VRFVFLARPTGGILKTSKEA---DAESLQA 119 Query: 124 TWVSLWDTPNIVVDFKKEAYRQVVADF 150 W P + ++ A + Sbjct: 120 AWYPRTSLPTPLRAHDILHLVELAAQY 146 >3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.27A {Streptococcus suis} Length = 206 Score = 46.9 bits (111), Expect = 2e-06 Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 26/138 (18%) Query: 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG-- 60 + I +D ++ V LW +P G + + D +E+ EE G Sbjct: 70 KLDTRAAIFQEDKILLVQEN--------DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLD 121 Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120 +++ ++ D + + L E + SE Sbjct: 122 VEAQRVVA------ILDKHKNN---PAKSAHRVTKVFILCRLLGGEFQPN-------SET 165 Query: 121 DAWTWVSLWDTPNIVVDF 138 A + SL D P + + Sbjct: 166 VASGFFSLDDLPPLYLGK 183 >2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, PSI, protein structure initiative; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180 Score = 45.5 bits (107), Expect = 5e-06 Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 19/137 (13%) Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI 61 R I++ + + V RR + L G + E L++A RE EE GI Sbjct: 36 RHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGI 95 Query: 62 KSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFD 121 + + Q+ F + G + F+ G + E E Sbjct: 96 AGVPF----AEHGQFYFEDKNCRVWGAL------FSCVSHG---PFALQ------EDEVS 136 Query: 122 AWTWVSLWDTPNIVVDF 138 W++ + +F Sbjct: 137 EVCWLTPEEITARCDEF 153 >3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural genomics, protein structure initiative; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300 Score = 45.4 bits (107), Expect = 7e-06 Identities = 22/158 (13%), Positives = 36/158 (22%), Gaps = 25/158 (15%) Query: 3 RRGVGILILNQDD---LVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEET 59 GV + +W+GRR + L M GG +E EE Sbjct: 118 AYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEA 177 Query: 60 G-----IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAY 114 + +G ++ Y + + F Sbjct: 178 DLPEALARQAIPVGAITYCMESPAGIKPDTLFLYDLALPEDFRPHNT------------- 224 Query: 115 GYESEFDAWTWVSLWDTPNIVV--DFKKEAYRQVVADF 150 + E + V + K V DF Sbjct: 225 --DGEMADFMLWPAAKVVEAVRTTEAFKFNVNLTVIDF 260 >2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145 Score = 44.4 bits (104), Expect = 1e-05 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 2/81 (2%) Query: 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIK 62 R V IL + + R+ + + ++ GG+ ED AA REL EE G Sbjct: 5 PRAVFILPVTAQGEAVLIRQFRYPLRATI--TEIVAGGVEKGEDLGAAAARELLEEVGGA 62 Query: 63 SISLLGQGDSYIQYDFPAHCI 83 + + Y Q Sbjct: 63 ASEWVPLPGFYPQPSISGVVF 83 >2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A* Length = 235 Score = 44.0 bits (103), Expect = 2e-05 Identities = 10/128 (7%), Positives = 32/128 (25%) Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60 + R + + N ++ + + +R L+ + Sbjct: 57 LLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAA 116 Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120 + + + + Y Q + + ++ T +E Sbjct: 117 QRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRMNVTLNPDPNEI 176 Query: 121 DAWTWVSL 128 ++ +VS Sbjct: 177 KSYCYVSK 184 >3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.70A {Methanosarcina mazei} Length = 153 Score = 43.6 bits (102), Expect = 2e-05 Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 22/154 (14%) Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI 61 Y V LI N+ + RR + + W +P G +NP E + RE++EETGI Sbjct: 7 YIISVYALIRNEKGEFLLLRRSENSR-TNAGKWDLPGGKVNPDESLKEGVAREVWEETGI 65 Query: 62 KSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFD 121 + GD Q +F + F + +++ + E Sbjct: 66 T----MVPGDIAGQVNFE--------LTEKKVIAIVFDGGYVVADVKLSY-------EHI 106 Query: 122 AWTWVSLWDTPNIVVDFKKEAYRQVVADFAYLIK 155 ++WVSL ++ +R F K Sbjct: 107 EYSWVSLEKILG--METLPAYFRDFFERFDRENK 138 >2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA; 1.80A {Aquifex aeolicus VF5} Length = 139 Score = 41.6 bits (97), Expect = 9e-05 Identities = 23/152 (15%), Positives = 42/152 (27%), Gaps = 36/152 (23%) Query: 5 GVGILILNQDD----LVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60 ++I D + + R + +P G + E +AA RE+ EETG Sbjct: 11 ATDVIIRLWDGENFKGIVLIERKYPPVG-----LALPGGFVEVGERVEEAAAREMREETG 65 Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120 ++ ++ + + E S+ Sbjct: 66 LE-----------VRLHKLMGVYSDPERDPRAHVVSVVWIGDAQGEPKAG-------SDA 107 Query: 121 DAWTWVSLWDTPN---------IVVDFKKEAY 143 L + P I++DF K Y Sbjct: 108 KKVKVYRLEEIPLDKLVFDHKKIILDFLKGNY 139 >1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A* Length = 212 Score = 41.2 bits (96), Expect = 1e-04 Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 10/86 (11%) Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHL------SLWQMPQGGINPQEDPL-DAAYRE 54 Y+ L+ L P G ++ ++ L + RE Sbjct: 32 YKHACHALLHAPSQAKLFD--RVPIRRVLLMMMRFDGRLGFPGGFVDTRDISLEEGLKRE 89 Query: 55 LYEETGIKSISL-LGQGDSYIQYDFP 79 L EE G ++ + + D Sbjct: 90 LEEELGPALATVEVTEDDYRSSQVRE 115 >2b06_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155 Score = 41.2 bits (96), Expect = 1e-04 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIK 62 + ++ + V + R N S + P G + E ++ RE+YEETG+ Sbjct: 11 NICLIEDLETQRVVMQYR--APENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLT 66 >2pqv_A MUTT/nudix family protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.63A {Streptococcus pneumoniae TIGR4} Length = 154 Score = 40.9 bits (95), Expect = 1e-04 Identities = 25/161 (15%), Positives = 46/161 (28%), Gaps = 27/161 (16%) Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60 ++ LI+ L+ K + G I E DA RE+ EE G Sbjct: 17 VFGVRATALIVQNHKLLVT---------KDKGKYYTIGGAIQVNESTEDAVVREVKEELG 67 Query: 61 IK--SISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYES 118 +K + L ++ + D ++ + + + Sbjct: 68 VKAQAGQLAFVVENRFEVD--------GVSYHNIEFHYLVDLLEDAPLTMQE------DE 113 Query: 119 EFDAWTWVSLWDTPNIVV--DFKKEAYRQVVADFAYLIKSE 157 + W+ L NI + F K A ++ E Sbjct: 114 KRQPCEWIDLDKLQNIQLVPVFLKTALPDWEGQLRHIHLEE 154 >3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} Length = 140 Score = 40.6 bits (94), Expect = 2e-04 Identities = 17/133 (12%), Positives = 33/133 (24%), Gaps = 20/133 (15%) Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60 + V ++ + +R + ++ P G + E +A RE+ EE Sbjct: 3 LKSIEVVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMD 62 Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120 + Y AF + + E Sbjct: 63 YV------------IEVGEKLLTVHHTYPDFEITMHAFLCHPVGQRYVLK--------EH 102 Query: 121 DAWTWVSLWDTPN 133 A W+S + Sbjct: 103 IAAQWLSTREMAI 115 >3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrolase, structural genomics; 2.10A {Bartonella henselae str} Length = 158 Score = 40.7 bits (94), Expect = 2e-04 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 20/130 (15%) Query: 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSI 64 V +L+QD+ V + +R + LW+ P G + E P + REL EE G+ Sbjct: 31 VVACALLDQDNRVLLTQR--PEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQ 88 Query: 65 SLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWT 124 + ++ + + + M +F ++G+ E Sbjct: 89 ADNLFPLTFASHGYETFHL-------LMPLYFCSHYKGVAQ-----------GREGQNLK 130 Query: 125 WVSLWDTPNI 134 W+ + D Sbjct: 131 WIFINDLDKY 140 >3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161 Score = 39.4 bits (91), Expect = 3e-04 Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 25/131 (19%) Query: 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG--IK 62 + ++ + V V + N + P G + E AA RE++EETG + Sbjct: 13 TMVMVTDPETQRVLVEDK---VNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLS 69 Query: 63 SISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDA 122 ++ G ++ + +R T + S Sbjct: 70 GVTFCG------TCEWFDD------DRQHRKLGLLYRASNFTGTLK--------ASAEGQ 109 Query: 123 WTWVSLWDTPN 133 +W+ + Sbjct: 110 LSWLPITALTR 120 >2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrolase, structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus HB8} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182 Score = 39.4 bits (91), Expect = 3e-04 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%) Query: 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIK 62 +L + + + R+ H K L ++P G ++ E P AA REL EE G + Sbjct: 41 VAASFVLPVTERGTALLVRQYRHPTGKFL--LEVPAGKVDEGETPEAAARRELREEVGAE 98 Query: 63 SISLLGQGDSYIQYDFPAHCI 83 + +L+ + Q F A Sbjct: 99 AETLIPLPSFHPQPSFTAVVF 119 >2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A Length = 217 Score = 38.6 bits (89), Expect = 7e-04 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%) Query: 33 LWQMPQGGINPQEDPL-DAAYRELYEETGIKSISLLGQGDSY 73 P G ++ Q+ L D REL EE G + + + Y Sbjct: 76 RLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDY 117 >2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A Length = 212 Score = 38.6 bits (89), Expect = 7e-04 Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 17/148 (11%) Query: 5 GVGILILNQD----DLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60 GV ++ + Q + + + ++ + + P G I+ E P AA REL EETG Sbjct: 63 GVAVIPVLQRTLHYECIVLVKQFRPPMGGYC--IEFPAGLIDDGETPEAAALRELEEETG 120 Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120 K + + G G +E + EF Sbjct: 121 YKGDI----------AECSPAVCMDPGLSNCTIHIVTVTINGDDAEN-ARPKPKPGDGEF 169 Query: 121 DAWTWVSLWDTPNIVVDFKKEAYRQVVA 148 + D + E + V A Sbjct: 170 VEVISLPKNDLLQRLDALVAEEHLTVDA 197 >2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273 Score = 37.4 bits (86), Expect = 0.001 Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 23/132 (17%) Query: 6 VGILILNQDDL-----VWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60 V +++L + V + +R + + W +P G +N E D+ RE EETG Sbjct: 42 VDMVLLCYNKEADQLKVLLIQR---KGHPFRNSWALPGGFVNRNESTEDSVLRETKEETG 98 Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120 + S + + + ++ + + Sbjct: 99 VV--------ISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAG-------DDA 143 Query: 121 DAWTWVSLWDTP 132 W +L Sbjct: 144 KEVHWFNLERHG 155 >1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194 Score = 37.0 bits (85), Expect = 0.002 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 5/102 (4%) Query: 2 YRR-GVGILILNQDDL-VWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEET 59 YRR V + + + D V + R H P G ++ E P AA RE EE Sbjct: 33 YRRAAVLVALTREADPRVLLTVRSSELPT-HKGQIAFPGGSLDAGETPTQAALREAQEEV 91 Query: 60 GIKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQ 101 + ++ G+ + + +G++ + Sbjct: 92 ALDPAAVTLLGELDDVFTPVGFHVTP--VLGRIAPEALDTLR 131 >2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.4.5.68 d.113.1.6 Length = 226 Score = 36.3 bits (83), Expect = 0.003 Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 16/144 (11%) Query: 5 GVGILIL---NQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI 61 G+ +I + + + +R + + W + G + E DAA R L E TG+ Sbjct: 15 GIDCIIFGFNEGEISLLLLKR---NFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGL 71 Query: 62 KSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFD 121 +++ + G P + A+ +E + + Sbjct: 72 ENVYMEQVGAFGAIDRDPGERVV----------SIAYYALININEYDRELVQKHNAYWVN 121 Query: 122 AWTWVSLWDTPNIVVDFKKEAYRQ 145 +L +VD +E +Q Sbjct: 122 INELPALIFDHPEMVDKAREMMKQ 145 >3cou_A Nudix motif 16, nucleoside diphosphate-linked moiety X motif 16; hydrolase, NUDT16, mRNA decapping, mRNA turnover, structural genomics consortium; 1.80A {Homo sapiens} Length = 217 Score = 36.1 bits (83), Expect = 0.004 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 33 LWQMPQGGINPQEDPL-DAAYRELYEETGI 61 P G ++ Q+ L D REL EE G Sbjct: 76 RLGFPGGFVDTQDRSLEDGLNRELREELGE 105 >1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170 Score = 35.8 bits (82), Expect = 0.004 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI 61 ++ V ++ L + +++V + ++P G I P EDPL+AA REL E+TG+ Sbjct: 33 HKPAVAVIALREGRMLFVRQMRPAVGLAP---LEIPAGLIEPGEDPLEAARRELAEQTGL 89 Query: 62 K 62 Sbjct: 90 S 90 >3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protein structure initiative, midwest center for structural genomics; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189 Score = 33.0 bits (74), Expect = 0.035 Identities = 14/116 (12%), Positives = 25/116 (21%), Gaps = 21/116 (18%) Query: 23 CFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHC 82 C + W +P G + E + A RE EE Sbjct: 56 CKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEAN---------------------A 94 Query: 83 IQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDF 138 E + + + + + E + P + F Sbjct: 95 RVEIRELYAVYSLPHISQVYMLFRAKLLDLDFFPGIESLEVRLFGEQEIPWNDIAF 150 >3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Length = 240 Score = 32.7 bits (74), Expect = 0.040 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 10/85 (11%) Query: 6 VGILIL---NQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQ--EDPLDAAYRELYEETG 60 V ++ +Q V + +R N+ L LW +P G I+ E R+L E+T Sbjct: 25 VDAVLFTYHDQQLKVLLVQR---SNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTA 81 Query: 61 --IKSISLLGQGDSYIQYDFPAHCI 83 I L + + Sbjct: 82 VVPPYIEQLCTVGNNSRDARGWSVT 106 >2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isoprene biosynthesis, lipid synthesis, peroxisome; HET: GOL; 1.81A {Homo sapiens} Length = 246 Score = 31.6 bits (71), Expect = 0.084 Identities = 16/139 (11%), Positives = 37/139 (26%), Gaps = 18/139 (12%) Query: 1 MYRRGVGILILNQDDLVWVGRRCFH----DNNKHLSLWQMPQGGINPQEDPL-----DAA 51 + R +++ N + + + +R S P E+ AA Sbjct: 68 LLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAA 127 Query: 52 YRELYEETGIKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDR 111 R L E GI + + + + + + + + Sbjct: 128 QRRLQAELGIPGEQISPEDIVF----MTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNP- 182 Query: 112 TAYGYESEFDAWTWVSLWD 130 SE + ++S + Sbjct: 183 ----DPSETKSILYLSQEE 197 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 28.8 bits (64), Expect = 0.63 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 40/146 (27%) Query: 22 RCFHDNNKH------------LSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQ 69 + F + N+H LS Q Q + E AA+ +L KS L+ Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK---AAFEDL------KSKGLI-P 1754 Query: 70 GDSYIQYDFPAHCIQENGYVGQMQKWFAFR-------FQGLTSEICVDRTAYGYESEFDA 122 D+ F H + E + + + ++G+T ++ V R G + Sbjct: 1755 ADA----TFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN---- 1806 Query: 123 WTWVSLWDTPN-IVVDFKKEAYRQVV 147 + +++ P + F +EA + VV Sbjct: 1807 YGMIAI--NPGRVAASFSQEALQYVV 1830 >3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA-binding, structural genomics consortium, SGC, RNA degradation; 1.70A {Homo sapiens} Length = 214 Score = 25.9 bits (57), Expect = 3.9 Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 9/45 (20%) Query: 29 KHLSLWQM--------PQGGINPQEDPLDAAY-RELYEETGIKSI 64 + L QM P G ++ + L+ R L G + Sbjct: 43 RFSVLMQMRFDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRL 87 >1af6_A Maltoporin, LAMB; membrane protein, specific porin, beta barrel, sugar transport, sucrose; HET: GLC FRU; 2.40A {Escherichia coli} SCOP: f.4.3.2 PDB: 1mal_A 1mpm_A* 1mpn_A* 1mpo_A* 1mpq_A* 2mpr_A* 1mpr_A* Length = 421 Score = 25.4 bits (55), Expect = 6.1 Identities = 5/34 (14%), Positives = 15/34 (44%) Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLW 34 +G ++ +W G+R + ++ H+ + Sbjct: 84 ANVQGKNLIEWLPGSTIWAGKRFYQRHDVHMIDF 117 >3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A, structural genomics, joint center for structural genomics, JCSG; 2.39A {Shewanella denitrificans} Length = 395 Score = 25.0 bits (54), Expect = 7.4 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 11/125 (8%) Query: 8 ILILNQDDLVWVGRRC---FHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSI 64 + +N D V R + N+ WQ P + + P ETG+ + Sbjct: 222 VPNMNPDGSVRGHLRTNAVGANLNRE---WQTP----SLERSPEVYYVVNKMHETGVD-L 273 Query: 65 SLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWT 124 GD + Y F A C Y ++ L+ +T +GY+ + Sbjct: 274 FYDVHGDEGLPYVFLAGCEGIPNYSDKLASLQQDFVAALSLASADFQTEFGYDKDEPGKA 333 Query: 125 WVSLW 129 +++ Sbjct: 334 NLTVA 338 >1ha0_A Protein (hemagglutinin precursor); glycoprotein, membrane-fusion precursor, virus/viral protein; HET: NAG BMA MAN; 2.80A {Influenza a virus} SCOP: b.19.1.2 h.3.1.1 Length = 494 Score = 24.7 bits (53), Expect = 10.0 Identities = 8/17 (47%), Positives = 11/17 (64%) Query: 85 ENGYVGQMQKWFAFRFQ 101 ENG+ G + W+ FR Q Sbjct: 332 ENGWEGMIDGWYGFRHQ 348 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.140 0.457 Gapped Lambda K H 0.267 0.0581 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,504,138 Number of extensions: 65528 Number of successful extensions: 256 Number of sequences better than 10.0: 1 Number of HSP's gapped: 230 Number of HSP's successfully gapped: 70 Length of query: 160 Length of database: 5,693,230 Length adjustment: 85 Effective length of query: 75 Effective length of database: 3,632,490 Effective search space: 272436750 Effective search space used: 272436750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (24.5 bits)