RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780557|ref|YP_003064970.1| dinucleoside polyphosphate
hydrolase [Candidatus Liberibacter asiaticus str. psy62]
(160 letters)
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc;
NMR {Escherichia coli} PDB: 2kdw_A
Length = 164
Score = 121 bits (304), Expect = 8e-29
Identities = 56/160 (35%), Positives = 81/160 (50%), Gaps = 14/160 (8%)
Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI 61
YR VGI+I N+ V RR + WQ PQGGINP E A YREL+EE G+
Sbjct: 7 YRPNVGIVICNRQGQVMWARR--FGQHS----WQFPQGGINPGESAEQAMYRELFEEVGL 60
Query: 62 KSISLLGQGDSY--IQYDFPAHCIQEN---GYVGQMQKWFAFRFQGLTSEICVDRTAYGY 116
+ + ++Y P ++ + +GQ QKWF + +EI + ++
Sbjct: 61 SRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSS--- 117
Query: 117 ESEFDAWTWVSLWDTPNIVVDFKKEAYRQVVADFAYLIKS 156
EFD W WVS W VV FK++ YR+V+ +FA ++ S
Sbjct: 118 TPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMS 157
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed
4-stranded beta sheet, 2-stranded antiparallel sheet;
NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Length = 165
Score = 115 bits (288), Expect = 5e-27
Identities = 58/156 (37%), Positives = 87/156 (55%), Gaps = 12/156 (7%)
Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI 61
YRR VGI ++N D ++ R + WQMPQGGI+ EDP +AA REL EETG+
Sbjct: 13 YRRNVGICLMNNDKKIFAASRLDIPD-----AWQMPQGGIDEGEDPRNAAIRELREETGV 67
Query: 62 KSISLLGQGDSYIQYDFPAHCIQE------NGYVGQMQKWFAFRFQGLTSEICVDRTAYG 115
S ++ + ++ YDFP ++ + + GQ QKWF F+F G EI +
Sbjct: 68 TSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSE 127
Query: 116 YESEFDAWTWVSLWDTPNIVVDFKKEAYRQVVADFA 151
+ EF W+WV+ ++ V+FKK Y++V++ FA
Sbjct: 128 -KPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFA 162
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix,
hydrolase, GFG, GFG-1, FGF2AS, structural genomics,
structural genomics consortium; HET: FLC; 1.70A {Homo
sapiens}
Length = 199
Score = 72.1 bits (176), Expect = 6e-14
Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 19/152 (12%)
Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI 61
++ GV + ++ + + D NK ++W+ P G P+ED D A RE++EETGI
Sbjct: 25 HQVGVAGAVFDESTRKILVVQ---DRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGI 81
Query: 62 KSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFD 121
K Q+ P G G+ + R + + I + E
Sbjct: 82 K-SEFRSVLSIRQQHTNP-------GAFGKSDMYIICRLKPYSFTINFC------QEECL 127
Query: 122 AWTWVSLWDTPNI--VVDFKKEAYRQVVADFA 151
W+ L D R ++ +
Sbjct: 128 RCEWMDLNDLAKTENTTPITSRVARLLLYGYR 159
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II(PSI
II), NYSGXRC, 11181H, structural genomics; 2.15A
{Bifidobacterium adolescentis ATCC15703}
Length = 364
Score = 68.7 bits (167), Expect = 5e-13
Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 19/145 (13%)
Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSL--------WQMPQGGINPQEDPLDAAY 52
++R G I N + ++ + + W P+G + E AA
Sbjct: 10 VWRWKAGSDIANDPAIASSKSAQEQLDSIEVCIVHRPKYDDWSWPKGKLEQNETHRHAAV 69
Query: 53 RELYEETGIKSISLLGQGDSYIQYDFPAHCIQE------NGYVGQMQKWFAFRFQGLTSE 106
RE+ EETG LG ++Y + W A +E
Sbjct: 70 REIGEETGSPVK--LGPYLCEVEYPLSEEGKKTRHSHDCTADTKHTLYWMAQPISADDAE 127
Query: 107 ICVDRTAYGY---ESEFDAWTWVSL 128
+D + E + WVS+
Sbjct: 128 HLLDAFGPVHRADVGEINDIVWVSV 152
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica
serovar typhimurium STR. unknown function; HET: PO4;
1.75A {Salmonella enterica subsp} PDB: 3n77_A
Length = 165
Score = 66.5 bits (162), Expect = 3e-12
Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 11/129 (8%)
Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLS-LWQMPQGGINPQEDPLDAAYRELYEET 59
M +R + ++ D + + DN W + GG+ P E +A RE+ EE
Sbjct: 25 MRQRTIVCPLIQNDGCYLLCKM--ADNRGVFPGQWALSGGGVEPGERIEEALRREIREEL 82
Query: 60 GIKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESE 119
G + + L + D + + F +IC++ E
Sbjct: 83 GEQ-LILSDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANRDICIND-------E 134
Query: 120 FDAWTWVSL 128
F + WV
Sbjct: 135 FQDYAWVKP 143
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich,
structural genomics, BSGC structure funded by NIH; 1.39A
{Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A
1su2_A* 1sz3_A*
Length = 159
Score = 63.7 bits (154), Expect = 2e-11
Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 20/154 (12%)
Query: 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLS-LWQMPQGGINPQEDPLDAAYRELYEETGI 61
R G+++LN+ + + + + + LW +P G + E+P DAA RE EETG+
Sbjct: 13 LRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGL 72
Query: 62 K--SISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESE 119
+ + LG FP G + + + + E
Sbjct: 73 RVRPVKFLGA----YLGRFPD---------GVLILRHVWLAEPEPGQTLAPAF----TDE 115
Query: 120 FDAWTWVSLWDTPNIVVDFKKEAYRQVVADFAYL 153
++VS D + + Y+ + L
Sbjct: 116 IAEASFVSREDFAQLYAAGQIRMYQTKLFYADAL 149
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A
{Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7
PDB: 2qkm_B*
Length = 271
Score = 63.1 bits (153), Expect = 3e-11
Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 30/159 (18%)
Query: 2 YRRGV---GILILNQD-DLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYE 57
Y+ + G ++L+ + + + W P+G I+ E +D A RE+YE
Sbjct: 97 YKTRIPVRGAIMLDMSMQQCVLVKGWKASSG-----WGFPKGKIDKDESDVDCAIREVYE 151
Query: 58 ETGIKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYE 117
ETG S + + + GQ + + L +
Sbjct: 152 ETGFDCSSRINP-----------NEFIDMTIRGQNVRLYIIPGISLDTRFESR-----TR 195
Query: 118 SEFDAWTWVSLWDTPNIVVDFKKEAYRQVVADFAYLIKS 156
E W +L D P FKK + + F Y++
Sbjct: 196 KEISKIEWHNLMDLPT----FKKNKPQTMKNKF-YMVIP 229
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure
initiative II(PSI II), nysgxrc; 1.76A {Bacillus
thuringiensis str}
Length = 153
Score = 62.0 bits (150), Expect = 6e-11
Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 17/143 (11%)
Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60
++ V +I N+ + W +P G I E P +A RE++EETG
Sbjct: 19 IFXPSVAAVIKNEQGEILFQYP-------GGEYWSLPAGAIELGETPEEAVVREVWEETG 71
Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120
+K + + + F + + E+ + E
Sbjct: 72 LKVQVK----KQKGVFGGKEYRYTYSNGDEVEYIVVVFECEVTSGELRSI------DGES 121
Query: 121 DAWTWVSLWDTPNIVVDFKKEAY 143
+ SL + P + + + + +
Sbjct: 122 LKLQYFSLSEKPPLALPYPDKIF 144
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual
domains, hydrolase; HET: AMP; 2.30A {Francisella
tularensis} PDB: 2r5w_B
Length = 352
Score = 59.8 bits (144), Expect = 3e-10
Identities = 27/141 (19%), Positives = 44/141 (31%), Gaps = 10/141 (7%)
Query: 10 ILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQ 69
++ +D + + +R + LW +P G + E A REL+EET I
Sbjct: 214 LVIVNDHILMVQR---KAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLA 270
Query: 70 GDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLW 129
+ F G F F EI + W+SL
Sbjct: 271 IAKRCEKVFDYPDRSVRGRTISHVGLFVFDQWPSLPEINAA-------DDAKDVKWISLG 323
Query: 130 DTPNIVVDFKKEAYRQVVADF 150
+ D E + Q++
Sbjct: 324 SNIKNICDRMLEDHYQIITIL 344
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP
pyrophosphohydrolase MUTT dihydroneopterin triphosphate
pyrophosphohydrolase folate biosynthesis; 1.80A
{Escherichia coli} PDB: 2o5w_A
Length = 150
Score = 56.4 bits (135), Expect = 3e-09
Identities = 28/156 (17%), Positives = 49/156 (31%), Gaps = 15/156 (9%)
Query: 1 MYRRGVG---ILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYE 57
+Y+R V ++ V + +R WQ G + E AA RE+ E
Sbjct: 5 VYKRPVSILVVIYAQDTKRVLMLQR-----RDDPDFWQSVTGSVEEGETAPQAAMREVKE 59
Query: 58 ETGIK-SISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGY 116
E I L D +F + Y + + F + +
Sbjct: 60 EVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTRNTESWF-----CLALPHERQIV 114
Query: 117 ESEFDAWTWVSLWDTPNIVV-DFKKEAYRQVVADFA 151
+E A+ W+ + ++A Q V + A
Sbjct: 115 FTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINAA 150
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrolase; two
individual domains; HET: APR NAD; 2.60A {Synechocystis
SP}
Length = 341
Score = 56.3 bits (135), Expect = 3e-09
Identities = 30/143 (20%), Positives = 47/143 (32%), Gaps = 16/143 (11%)
Query: 10 ILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI--KSISLL 67
++ Q V + RR L L +P G I E ++ REL EET + L
Sbjct: 209 VVVQAGHVLMVRR---QAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLR 265
Query: 68 GQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVS 127
G +D P + A+ Q E+ + + W+S
Sbjct: 266 GSIVDSHVFDAP------GRSLRGRTITHAYFIQLPGGELPAVKGG----DDAQKAWWMS 315
Query: 128 LWDTPNIVVDFKKEAYRQVVADF 150
L D E + Q++ F
Sbjct: 316 LADLYAQEEQI-YEDHFQIIQHF 337
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium
perfringens atcc 13124}
Length = 197
Score = 55.7 bits (133), Expect = 5e-09
Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 7/129 (5%)
Query: 29 KHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQG-DSYIQYDFPAHCIQENG 87
+ W G + ++D L A +EL EETG+K+ + L + H +
Sbjct: 66 NIYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGKY 125
Query: 88 YVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVV-DFKKEAYRQV 146
+ + + E + + E E W+ + Y ++
Sbjct: 126 VSSHLHLNLTYLIECSEDETLMLK-----EDENSGVMWIPFNEISKYCSEPHMIPIYEKL 180
Query: 147 VADFAYLIK 155
+ K
Sbjct: 181 INKLKTQSK 189
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix
Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP:
d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Length = 160
Score = 55.2 bits (132), Expect = 6e-09
Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 11/129 (8%)
Query: 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSI 64
+ ++ N +G+R N W +P G + E A R E G++
Sbjct: 20 SLDFIVENSRGEFLLGKR---TNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLP 76
Query: 65 SLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWT 124
GQ Q+ + + + + F FR + + + D +
Sbjct: 77 ITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLP--------DEQHDDYR 128
Query: 125 WVSLWDTPN 133
W++
Sbjct: 129 WLTSDALLA 137
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay,
cytoplasm, hydrolase, manganese, metal-binding, mRNA
processing; NMR {Saccharomyces cerevisiae}
Length = 146
Score = 54.1 bits (129), Expect = 2e-08
Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 23/139 (16%)
Query: 6 VGILILNQD-DLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSI 64
G I N++ + + + +++ W P+G I+ E+ +D RE+ EE G
Sbjct: 7 RGAAIFNENLSKILLVQG--TESDS----WSFPRGKISKDENDIDCCIREVKEEIGFDLT 60
Query: 65 SLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWT 124
+ + E G+ K F +E D
Sbjct: 61 DYID-----------DNQFIERNIQGKNYKIFLISGVSEVFNFKPQ-----VRNEIDKIE 104
Query: 125 WVSLWDTPNIVVDFKKEAY 143
W + + Y
Sbjct: 105 WFDFKKISKTMYKSNIKYY 123
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer,
putative nudix hydrolase, structural genomics, unknown
function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1
PDB: 1jrk_A 1k26_A
Length = 156
Score = 53.7 bits (128), Expect = 2e-08
Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 22/134 (16%)
Query: 6 VGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI--KS 63
V +L ++ V + + K L ++ P G + E P++A RE EETGI +
Sbjct: 3 VTSGVLVENGKVLLVKH------KRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEP 56
Query: 64 ISLLGQGDSYIQYDFPAHCIQENGYV---GQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120
I + P + V + F + +
Sbjct: 57 IGFTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRV-----------GGDL 105
Query: 121 DAWTWVSLWDTPNI 134
W+ + + I
Sbjct: 106 KNGEWIDVREIDRI 119
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate,
structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex
aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Length = 134
Score = 53.5 bits (128), Expect = 2e-08
Identities = 21/150 (14%), Positives = 53/150 (35%), Gaps = 26/150 (17%)
Query: 6 VGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSIS 65
G ++ +++ + ++W P+G I P E P + A RE++EETG+K
Sbjct: 7 AGGVLFKDGEVLLIKTP--------SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEI 58
Query: 66 LLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTW 125
L + + + + K++ +++ E +
Sbjct: 59 L------DYIGEIHYWYTLKGERIFKTVKYYLMKYKEGEPRP---------SWEVKDAKF 103
Query: 126 VSLWDTPNIVVDFKKEAYRQVVADFAYLIK 155
+ + ++ K + +++ L +
Sbjct: 104 FPIKEAKKLL---KYKGDKEIFEKALKLKE 130
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR
{Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Length = 171
Score = 53.5 bits (128), Expect = 2e-08
Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 19/129 (14%)
Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQ-EDPLDAAYRELYEET 59
R V + N +W+ RR + + + GG E +A RE EE
Sbjct: 32 ERVRVVNAFLRNSQGQLWIPRRSPSKSL-FPNALDVSVGGAVQSGETYEEAFRREAREEL 90
Query: 60 GIKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESE 119
++ +L + + + + V +++ F ++
Sbjct: 91 NVEIDALSWRPLAS--FSPFQTTLSSFMCVYELRSDATPIFN---------------PND 133
Query: 120 FDAWTWVSL 128
W++
Sbjct: 134 ISGGEWLTP 142
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl,
isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2
PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A*
1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A
2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Length = 190
Score = 53.1 bits (127), Expect = 3e-08
Identities = 24/130 (18%), Positives = 37/130 (28%), Gaps = 19/130 (14%)
Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLS-LWQMPQGG-INPQEDPLDAAYRELYEET 59
+ N + V RR + K +W G E DA R E
Sbjct: 31 LHLAFSSWLFNAKGQLLVTRR--ALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYEL 88
Query: 60 GIKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQG-LTSEICVDRTAYGYES 118
G++ I DF +G V + F TS + ++ +
Sbjct: 89 GVEITPP-----ESIYPDFRYRATDPSGIV---ENEVCPVFAARTTSALQIN------DD 134
Query: 119 EFDAWTWVSL 128
E + W L
Sbjct: 135 EVMDYQWCDL 144
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, hydrolase,
riken structural genomics/proteomics initiative, RSGI;
1.70A {Thermus thermophilus HB8} SCOP: d.113.1.1 PDB:
1vc8_A 1vc9_A*
Length = 126
Score = 52.7 bits (126), Expect = 4e-08
Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 26/131 (19%)
Query: 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSI 64
G G ++ N V + R + W P+G P E +AA RE++EETG+++
Sbjct: 4 GAGGVVFNAKREVLLLRD-------RMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAE 56
Query: 65 SLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWT 124
+ V + WF R +G E
Sbjct: 57 ---------VLLPLYPTRYVNPKGVEREVHWFLMRGEGAPRL----------EEGMTGAG 97
Query: 125 WVSLWDTPNIV 135
W S + ++
Sbjct: 98 WFSPEEARALL 108
>3dku_A Putative phosphohydrolase; nudix hydrolase, ORF153, YMFB,
nucleoside triphosphatase; 2.69A {Escherichia coli apec
O1}
Length = 153
Score = 52.0 bits (124), Expect = 6e-08
Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 22/151 (14%)
Query: 1 MYRRGVGI-LILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEET 59
M++ V + +++ + V + LW P G + E ++AA REL+EET
Sbjct: 1 MFKPHVTVACVVHAEGKFLVVEETINGKA----LWNQPAGHLEADETLVEAAARELWEET 56
Query: 60 GIKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESE 119
GI + + F F + +S+
Sbjct: 57 GISAQPQHFIRMHQWIAPDKTPFL-----------RFLFAIELEQICPTQPH-----DSD 100
Query: 120 FDAWTWVSLWDTPNIVVDFKKEAYRQVVADF 150
D WVS + + + + + +
Sbjct: 101 IDCCRWVSAEEILQA-SNLRSPLVAESIRCY 130
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2,
protein structure initiative; 1.70A {Chromobacterium
violaceum}
Length = 163
Score = 51.5 bits (123), Expect = 8e-08
Identities = 34/153 (22%), Positives = 52/153 (33%), Gaps = 37/153 (24%)
Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60
+ RR I I D ++ R + +P G N E A RE+ EETG
Sbjct: 15 LARRATAI-IEMPDGVLVTASR--------GGRYNLPGGKANRGELRSQALIREIREETG 65
Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120
++ S+L D F AH + + QG + +E
Sbjct: 66 LRINSMLYLFD--HITPFNAHKV------------YLCIAQG---QPKPQ-------NEI 101
Query: 121 DAWTWVSLWDTPNIVVDFKKEAYRQVVADFAYL 153
+ VS DT +D R ++ +A L
Sbjct: 102 ERIALVSSPDTD---MDL-FVEGRAILRRYARL 130
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis,
structural genomics, PSI, protein structure initiative;
HET: 1PE; 1.90A {Enterococcus faecalis V583} SCOP:
d.113.1.1
Length = 148
Score = 51.0 bits (121), Expect = 1e-07
Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 26/150 (17%)
Query: 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG-- 60
R I++ ++ V + N + +P G I E +A +RE+ EE G
Sbjct: 18 RYAAYIIVSKPENNTMVLVQ--APNGA----YFLPGGEIEGTETKEEAIHREVLEELGIS 71
Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120
++ LG+ D Y + GY W
Sbjct: 72 VEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSE---------------PLERT 116
Query: 121 DAWTWVSLWDTPNIVVDFKKEAYRQVVADF 150
+ WV+ + ++ K+ ++R V +
Sbjct: 117 NTLHWVAPEEAVRLL---KRGSHRWAVEKW 143
>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A
hydrolase, alpha-beta; NMR {Homo sapiens} SCOP:
d.113.1.1 PDB: 1xsb_A 1xsc_A*
Length = 153
Score = 51.0 bits (121), Expect = 1e-07
Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 21/156 (13%)
Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60
++RR + + N + + D H W P+G + P ED L+ A R EE G
Sbjct: 15 IFRRCLIPKVDNNAIEFLLLQA--SDGIHH---WTPPKGHVEPGEDDLETALRATQEEAG 69
Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120
I++ L + ++ A + + L E
Sbjct: 70 IEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRL-------------SHEH 116
Query: 121 DAWTWVSLWDTPNIVVDFKKEAYRQVVADFAYLIKS 156
A+ W+ L + + + + + + + + S
Sbjct: 117 QAYRWLGLEEACQLA---QFKEMKAALQEGHQFLCS 149
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium
cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP:
d.113.1.1 PDB: 1kt9_A*
Length = 138
Score = 50.6 bits (120), Expect = 1e-07
Identities = 28/154 (18%), Positives = 46/154 (29%), Gaps = 25/154 (16%)
Query: 1 MYRRGVGILILNQDD---LVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYE 57
M + G++I + + + + + W P+G ++P ED AA RE E
Sbjct: 1 MVVKAAGLVIYRKLAGKIEFLLLQASYPPH-----HWTPPKGHVDPGEDEWQAAIRETKE 55
Query: 58 ETGIKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYE 117
E I L I D E + K++ +
Sbjct: 56 EANITKEQL------TIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQL--------S 101
Query: 118 SEFDAWTWVSLWDTPNIVVDFKKEAYRQVVADFA 151
E W W L D I ++ F+
Sbjct: 102 HEHQNWKWCELEDAIKIA---DYAEMGSLLRKFS 132
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, unknown function; 1.55A {Nitrosomonas europaea}
SCOP: d.113.1.1
Length = 153
Score = 50.6 bits (120), Expect = 1e-07
Identities = 23/146 (15%), Positives = 38/146 (26%), Gaps = 19/146 (13%)
Query: 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSI 64
V +I D + V P G + P E + A RE+ EETG
Sbjct: 10 TVAAVIEQDDKYLLVEEI----PRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHS-- 63
Query: 65 SLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWT 124
I + F F G ++ ++
Sbjct: 64 ----------FLPEVLTGIYHWTCASNGTTYLRFTFSG---QVVSFDPDRKLDTGIVRAA 110
Query: 125 WVSLWDTPNIVVDFKKEAYRQVVADF 150
W S+ + + Q + D+
Sbjct: 111 WFSIDEIRAKQAMHRTPLVMQCIEDY 136
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, structural genomics; 2.02A {Clostridium
perfringens atcc 13124}
Length = 159
Score = 50.3 bits (119), Expect = 2e-07
Identities = 23/139 (16%), Positives = 35/139 (25%), Gaps = 22/139 (15%)
Query: 6 VGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSIS 65
V + I+ +D ++ + G I E P +A RE EE G+
Sbjct: 9 VSVFIVCKDKVLLHLHKKAK-------KMLPLGGHIEVNELPEEACIREAKEEAGLNVTL 61
Query: 66 L---------LGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGY 116
P H I + F + + E +
Sbjct: 62 YNPIDINLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPE------ 115
Query: 117 ESEFDAWTWVSLWDTPNIV 135
E W S D N
Sbjct: 116 IGESKILKWYSKEDLKNAH 134
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase;
HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB:
1qvj_A*
Length = 292
Score = 50.0 bits (119), Expect = 2e-07
Identities = 17/122 (13%), Positives = 30/122 (24%), Gaps = 10/122 (8%)
Query: 29 KHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSY----IQYDFPAHCIQ 84
K W +P G ++P E RE EE + + H +
Sbjct: 147 KDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVI 206
Query: 85 ENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYE------SEFDAWTWVSLWDTPNIVVDF 138
GYV + + + + WV + D +
Sbjct: 207 YKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASH 266
Query: 139 KK 140
+
Sbjct: 267 SQ 268
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix
fold, hydrolase; 1.90A {Escherichia coli} SCOP:
d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Length = 209
Score = 49.6 bits (118), Expect = 3e-07
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 5 GVGILILNQDD----LVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60
+L + L+ R +D ++ L +M G I E D A RE EE G
Sbjct: 59 AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAG 118
Query: 61 IKSISLLGQGDSY 73
+
Sbjct: 119 LIVKRTKPVLSFL 131
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.50A {Bacillus
halodurans}
Length = 188
Score = 49.6 bits (118), Expect = 4e-07
Identities = 23/134 (17%), Positives = 40/134 (29%), Gaps = 20/134 (14%)
Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60
M + V I+ D V + ++ W P G + E L+ RE +EETG
Sbjct: 1 MSLQRVTNCIVVDHDQVLLLQKPRRG------WWVAPGGKMEAGESILETVKREYWEETG 54
Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120
I + + + + G + F F+ E+ S
Sbjct: 55 ITVKNP----ELKGIFSMVIF---DEGKIVSEWMLFTFKATEHEGEMLKQ-------SPE 100
Query: 121 DAWTWVSLWDTPNI 134
W + +
Sbjct: 101 GKLEWKKKDEVLEL 114
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair;
NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A*
1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A*
3a6v_A*
Length = 129
Score = 49.3 bits (117), Expect = 4e-07
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 1 MYRRGVGI-LILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEET 59
M + + + +I N+++ +++ RR + + + P G I E P A REL EE
Sbjct: 1 MKKLQIAVGIIRNENNEIFITRR--AADAHMANKLEFPGGKIEMGETPEQAVVRELQEEV 58
Query: 60 GIK 62
GI
Sbjct: 59 GIT 61
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol
polyphosphate metabolism, structural genomics,
structural genomics consortium; HET: IHP; 1.25A {Homo
sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A
Length = 194
Score = 48.9 bits (116), Expect = 5e-07
Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 32/152 (21%)
Query: 2 YRRGVGILILNQDD---LVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEE 58
Y++ L + ++ V +H W +P GG+ P+E+P AA RE+ EE
Sbjct: 39 YKKRAACLCFRSESEEEVLLVSSS------RHPDRWIVPGGGMEPEEEPSVAAVREVCEE 92
Query: 59 TGIKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYES 118
G+K G Q + + + + +
Sbjct: 93 AGVKGTLGRLVGIFENQERKHRTYV------------YVLIVTEVLEDWEDS------VN 134
Query: 119 EFDAWTWVSLWDTPNIVVDFKKEAYRQVVADF 150
W + D ++ + ++ V A +
Sbjct: 135 IGRKREWFKIEDAIKVL-----QYHKPVQASY 161
>1iry_A HMTH1; nudix motif(G37-L59), hydrolase; NMR {Homo sapiens} SCOP:
d.113.1.1
Length = 156
Score = 48.1 bits (114), Expect = 1e-06
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 4 RGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKS 63
R ++++ Q V +G + W G + E D A REL EE+G+
Sbjct: 5 RLYTLVLVLQPQRVLLGMK---KRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTV 61
Query: 64 ISLLGQGDSYIQYDFP 79
+L G I ++F
Sbjct: 62 DALHKVG--QIVFEFV 75
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.20A {Listeria innocua}
Length = 187
Score = 47.8 bits (113), Expect = 1e-06
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 19/130 (14%)
Query: 28 NKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHCIQENG 87
N W +P G ++ E AA REL EET + D + +
Sbjct: 63 NMEGGKWAVPGGFVDENESAEQAAERELEEETSLT--------DIPLIPFGVFDKPGRDP 114
Query: 88 YVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDFK-----KEA 142
+ + F E + + + + + F K+A
Sbjct: 115 RGWIISRAFYAIVPPEALEKRAA------GDDAAEIGLFPMTEALELPLAFDHLDMLKKA 168
Query: 143 YRQVVADFAY 152
+ + +F
Sbjct: 169 FSAITEEFLL 178
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix
hydrolase, PSI-2, protein structure initiative; 1.89A
{Thermotoga maritima}
Length = 211
Score = 47.7 bits (113), Expect = 1e-06
Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 32/158 (20%)
Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHL-SLWQMPQGG-------INPQEDPLDAAYR 53
++ + +++ D V + +R + K L +L+ + GG P+E L R
Sbjct: 66 TKQVIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLER 125
Query: 54 ELYEETGI--KSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDR 111
E+ EE + + + LG I V ++ F +G +
Sbjct: 126 EVNEEVDVSLRELEFLG----LINSSTT--------EVSRVHLGALFLGRGKFFSVK--- 170
Query: 112 TAYGYESEFDAWTWVSLWDTPNIVVDFKKEAYRQVVAD 149
E + W + L + E + ++ A
Sbjct: 171 -----EKDLFEWELIKLEELEKFSGVM--EGWSKISAA 201
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 2.55A
{Bacillus thuringiensis str}
Length = 171
Score = 47.7 bits (113), Expect = 1e-06
Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 19/128 (14%)
Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60
+ + V +++ + ++ V ++ + W +P G + E +A RE+ EETG
Sbjct: 21 IMQVRVTGILIEDEKVLLVKQKVANR------DWSLPGGRVENGETLEEAMIREMREETG 74
Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120
++ D P F + + EI + + +
Sbjct: 75 LEVK----IKKLLYVCDKP--------DASPSLLHITFLLERIEGEITLPSNEFD-HNPI 121
Query: 121 DAWTWVSL 128
V +
Sbjct: 122 HDVQMVPI 129
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine
diphospho-ribose, RV1700; HET: APR; 2.00A {Mycobacterium
tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A*
1mqw_A* 1mr2_A*
Length = 207
Score = 47.3 bits (112), Expect = 2e-06
Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 18/128 (14%)
Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQ-EDPLDAAYRELYEETG 60
+ V I+ ++ + + + + H + L W++P G ++ E P A REL EE G
Sbjct: 42 HFGAVAIVAMDDNGNIPMVYQYRHTYGRRL--WELPAGLLDVAGEPPHLTAARELREEVG 99
Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120
++ + A + + GL V R +E
Sbjct: 100 LQ-----ASTWQVLVDLDTAPGFSDE-------SVRVYLATGLRE---VGRPEAHHEEAD 144
Query: 121 DAWTWVSL 128
W +
Sbjct: 145 MTMGWYPI 152
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18;
NUDT18, NXR1, nucleotide hydrolase, hydrolase,
structural genomics; 2.10A {Homo sapiens}
Length = 156
Score = 47.0 bits (111), Expect = 2e-06
Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 25/147 (17%)
Query: 6 VGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI--KS 63
V + L++ D V + + + W +P G + P E ++A RE+ EE G+ +
Sbjct: 23 VLAVFLSEQDEVLLIQE---AKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEP 79
Query: 64 ISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAW 123
+LL + + F F + + + A ++E
Sbjct: 80 ETLLSVEERGPSW-----------------VRFVFLARPTGGILKTSKEA---DAESLQA 119
Query: 124 TWVSLWDTPNIVVDFKKEAYRQVVADF 150
W P + ++ A +
Sbjct: 120 AWYPRTSLPTPLRAHDILHLVELAAQY 146
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI; 2.27A {Streptococcus suis}
Length = 206
Score = 46.9 bits (111), Expect = 2e-06
Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 26/138 (18%)
Query: 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG-- 60
+ I +D ++ V LW +P G + + D +E+ EE G
Sbjct: 70 KLDTRAAIFQEDKILLVQEN--------DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLD 121
Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120
+++ ++ D + + L E + SE
Sbjct: 122 VEAQRVVA------ILDKHKNN---PAKSAHRVTKVFILCRLLGGEFQPN-------SET 165
Query: 121 DAWTWVSLWDTPNIVVDF 138
A + SL D P + +
Sbjct: 166 VASGFFSLDDLPPLYLGK 183
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural
genomics, PSI, protein structure initiative; HET: MSE;
2.00A {Escherichia coli K12} SCOP: d.113.1.2
Length = 180
Score = 45.5 bits (107), Expect = 5e-06
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 19/137 (13%)
Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI 61
R I++ + + V RR + L G + E L++A RE EE GI
Sbjct: 36 RHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGI 95
Query: 62 KSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFD 121
+ + Q+ F + G + F+ G + E E
Sbjct: 96 AGVPF----AEHGQFYFEDKNCRVWGAL------FSCVSHG---PFALQ------EDEVS 136
Query: 122 AWTWVSLWDTPNIVVDF 138
W++ + +F
Sbjct: 137 EVCWLTPEEITARCDEF 153
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3
family, structural genomics, protein structure
initiative; HET: MSE; 1.80A {Rhodospirillum rubrum atcc
11170}
Length = 300
Score = 45.4 bits (107), Expect = 7e-06
Identities = 22/158 (13%), Positives = 36/158 (22%), Gaps = 25/158 (15%)
Query: 3 RRGVGILILNQDD---LVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEET 59
GV + +W+GRR + L M GG +E EE
Sbjct: 118 AYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEA 177
Query: 60 G-----IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAY 114
+ +G ++ Y + + F
Sbjct: 178 DLPEALARQAIPVGAITYCMESPAGIKPDTLFLYDLALPEDFRPHNT------------- 224
Query: 115 GYESEFDAWTWVSLWDTPNIVV--DFKKEAYRQVVADF 150
+ E + V + K V DF
Sbjct: 225 --DGEMADFMLWPAAKVVEAVRTTEAFKFNVNLTVIDF 260
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase;
2.00A {Deinococcus radiodurans}
Length = 145
Score = 44.4 bits (104), Expect = 1e-05
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIK 62
R V IL + + R+ + + ++ GG+ ED AA REL EE G
Sbjct: 5 PRAVFILPVTAQGEAVLIRQFRYPLRATI--TEIVAGGVEKGEDLGAAAARELLEEVGGA 62
Query: 63 SISLLGQGDSYIQYDFPAHCI 83
+ + Y Q
Sbjct: 63 ASEWVPLPGFYPQPSISGVVF 83
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein;
1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Length = 235
Score = 44.0 bits (103), Expect = 2e-05
Identities = 10/128 (7%), Positives = 32/128 (25%)
Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60
+ R + + N ++ + + +R L+ +
Sbjct: 57 LLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAA 116
Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120
+ + + + Y Q + + ++ T +E
Sbjct: 117 QRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRMNVTLNPDPNEI 176
Query: 121 DAWTWVSL 128
++ +VS
Sbjct: 177 KSYCYVSK 184
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2,
protein structure initiative; 1.70A {Methanosarcina
mazei}
Length = 153
Score = 43.6 bits (102), Expect = 2e-05
Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 22/154 (14%)
Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI 61
Y V LI N+ + RR + + W +P G +NP E + RE++EETGI
Sbjct: 7 YIISVYALIRNEKGEFLLLRRSENSR-TNAGKWDLPGGKVNPDESLKEGVAREVWEETGI 65
Query: 62 KSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFD 121
+ GD Q +F + F + +++ + E
Sbjct: 66 T----MVPGDIAGQVNFE--------LTEKKVIAIVFDGGYVVADVKLSY-------EHI 106
Query: 122 AWTWVSLWDTPNIVVDFKKEAYRQVVADFAYLIK 155
++WVSL ++ +R F K
Sbjct: 107 EYSWVSLEKILG--METLPAYFRDFFERFDRENK 138
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural
genomics, NPPSFA; 1.80A {Aquifex aeolicus VF5}
Length = 139
Score = 41.6 bits (97), Expect = 9e-05
Identities = 23/152 (15%), Positives = 42/152 (27%), Gaps = 36/152 (23%)
Query: 5 GVGILILNQDD----LVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60
++I D + + R + +P G + E +AA RE+ EETG
Sbjct: 11 ATDVIIRLWDGENFKGIVLIERKYPPVG-----LALPGGFVEVGERVEEAAAREMREETG 65
Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120
++ ++ + + E S+
Sbjct: 66 LE-----------VRLHKLMGVYSDPERDPRAHVVSVVWIGDAQGEPKAG-------SDA 107
Query: 121 DAWTWVSLWDTPN---------IVVDFKKEAY 143
L + P I++DF K Y
Sbjct: 108 KKVKVYRLEEIPLDKLVFDHKKIILDFLKGNY 139
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold; 2.10A
{Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A*
2a8p_A* 2a8r_A* 2a8s_A*
Length = 212
Score = 41.2 bits (96), Expect = 1e-04
Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 10/86 (11%)
Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHL------SLWQMPQGGINPQEDPL-DAAYRE 54
Y+ L+ L P G ++ ++ L + RE
Sbjct: 32 YKHACHALLHAPSQAKLFD--RVPIRRVLLMMMRFDGRLGFPGGFVDTRDISLEEGLKRE 89
Query: 55 LYEETGIKSISL-LGQGDSYIQYDFP 79
L EE G ++ + + D
Sbjct: 90 LEEELGPALATVEVTEDDYRSSQVRE 115
>2b06_A MUTT/nudix family protein; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP:
d.113.1.1
Length = 155
Score = 41.2 bits (96), Expect = 1e-04
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIK 62
+ ++ + V + R N S + P G + E ++ RE+YEETG+
Sbjct: 11 NICLIEDLETQRVVMQYR--APENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLT 66
>2pqv_A MUTT/nudix family protein; structural genomics, PSI-2, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.63A {Streptococcus pneumoniae TIGR4}
Length = 154
Score = 40.9 bits (95), Expect = 1e-04
Identities = 25/161 (15%), Positives = 46/161 (28%), Gaps = 27/161 (16%)
Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60
++ LI+ L+ K + G I E DA RE+ EE G
Sbjct: 17 VFGVRATALIVQNHKLLVT---------KDKGKYYTIGGAIQVNESTEDAVVREVKEELG 67
Query: 61 IK--SISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYES 118
+K + L ++ + D ++ + + +
Sbjct: 68 VKAQAGQLAFVVENRFEVD--------GVSYHNIEFHYLVDLLEDAPLTMQE------DE 113
Query: 119 EFDAWTWVSLWDTPNIVV--DFKKEAYRQVVADFAYLIKSE 157
+ W+ L NI + F K A ++ E
Sbjct: 114 KRQPCEWIDLDKLQNIQLVPVFLKTALPDWEGQLRHIHLEE 154
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2,
protein structure initiative; 2.00A {Bacteroides
fragilis nctc 9343}
Length = 140
Score = 40.6 bits (94), Expect = 2e-04
Identities = 17/133 (12%), Positives = 33/133 (24%), Gaps = 20/133 (15%)
Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60
+ V ++ + +R + ++ P G + E +A RE+ EE
Sbjct: 3 LKSIEVVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMD 62
Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120
+ Y AF + + E
Sbjct: 63 YV------------IEVGEKLLTVHHTYPDFEITMHAFLCHPVGQRYVLK--------EH 102
Query: 121 DAWTWVSLWDTPN 133
A W+S +
Sbjct: 103 IAAQWLSTREMAI 115
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious
diseases, hydrolase, structural genomics; 2.10A
{Bartonella henselae str}
Length = 158
Score = 40.7 bits (94), Expect = 2e-04
Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 20/130 (15%)
Query: 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSI 64
V +L+QD+ V + +R + LW+ P G + E P + REL EE G+
Sbjct: 31 VVACALLDQDNRVLLTQR--PEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQ 88
Query: 65 SLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWT 124
+ ++ + + + M +F ++G+ E
Sbjct: 89 ADNLFPLTFASHGYETFHL-------LMPLYFCSHYKGVAQ-----------GREGQNLK 130
Query: 125 WVSLWDTPNI 134
W+ + D
Sbjct: 131 WIFINDLDKY 140
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II),
NYSGXRC, 11180K, structural genomics; 2.00A
{Lactobacillus brevis atcc 367}
Length = 161
Score = 39.4 bits (91), Expect = 3e-04
Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 25/131 (19%)
Query: 5 GVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG--IK 62
+ ++ + V V + N + P G + E AA RE++EETG +
Sbjct: 13 TMVMVTDPETQRVLVEDK---VNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLS 69
Query: 63 SISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDA 122
++ G ++ + +R T + S
Sbjct: 70 GVTFCG------TCEWFDD------DRQHRKLGLLYRASNFTGTLK--------ASAEGQ 109
Query: 123 WTWVSLWDTPN 133
+W+ +
Sbjct: 110 LSWLPITALTR 120
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD,
hydrolase, structural genomics, NPPSFA; HET: RBY; 1.66A
{Thermus thermophilus HB8} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Length = 182
Score = 39.4 bits (91), Expect = 3e-04
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 3 RRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIK 62
+L + + + R+ H K L ++P G ++ E P AA REL EE G +
Sbjct: 41 VAASFVLPVTERGTALLVRQYRHPTGKFL--LEVPAGKVDEGETPEAAARRELREEVGAE 98
Query: 63 SISLLGQGDSYIQYDFPAHCI 83
+ +L+ + Q F A
Sbjct: 99 AETLIPLPSFHPQPSFTAVVF 119
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA
turnover, structural genomic consortium, SGC; HET: IMP;
1.72A {Homo sapiens} PDB: 3cou_A
Length = 217
Score = 38.6 bits (89), Expect = 7e-04
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 33 LWQMPQGGINPQEDPL-DAAYRELYEETGIKSISLLGQGDSY 73
P G ++ Q+ L D REL EE G + + + Y
Sbjct: 76 RLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDY 117
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose
pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo
sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A
Length = 212
Score = 38.6 bits (89), Expect = 7e-04
Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 17/148 (11%)
Query: 5 GVGILILNQD----DLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60
GV ++ + Q + + + ++ + + P G I+ E P AA REL EETG
Sbjct: 63 GVAVIPVLQRTLHYECIVLVKQFRPPMGGYC--IEFPAGLIDDGETPEAAALRELEEETG 120
Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120
K + + G G +E + EF
Sbjct: 121 YKGDI----------AECSPAVCMDPGLSNCTIHIVTVTINGDDAEN-ARPKPKPGDGEF 169
Query: 121 DAWTWVSLWDTPNIVVDFKKEAYRQVVA 148
+ D + E + V A
Sbjct: 170 VEVISLPKNDLLQRLDALVAEEHLTVDA 197
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP:
a.4.5.68 d.113.1.6
Length = 273
Score = 37.4 bits (86), Expect = 0.001
Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 23/132 (17%)
Query: 6 VGILILNQDDL-----VWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60
V +++L + V + +R + + W +P G +N E D+ RE EETG
Sbjct: 42 VDMVLLCYNKEADQLKVLLIQR---KGHPFRNSWALPGGFVNRNESTEDSVLRETKEETG 98
Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120
+ S + + + ++ + +
Sbjct: 99 VV--------ISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAG-------DDA 143
Query: 121 DAWTWVSLWDTP 132
W +L
Sbjct: 144 KEVHWFNLERHG 155
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans,
hydrolase; 1.70A {Deinococcus radiodurans} SCOP:
d.113.1.1 PDB: 1nqy_A
Length = 194
Score = 37.0 bits (85), Expect = 0.002
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 5/102 (4%)
Query: 2 YRR-GVGILILNQDDL-VWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEET 59
YRR V + + + D V + R H P G ++ E P AA RE EE
Sbjct: 33 YRRAAVLVALTREADPRVLLTVRSSELPT-HKGQIAFPGGSLDAGETPTQAALREAQEEV 91
Query: 60 GIKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQ 101
+ ++ G+ + + +G++ +
Sbjct: 92 ALDPAAVTLLGELDDVFTPVGFHVTP--VLGRIAPEALDTLR 131
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein
structure initiative; 2.50A {Bacteroides
thetaiotaomicron vpi-5482} SCOP: a.4.5.68 d.113.1.6
Length = 226
Score = 36.3 bits (83), Expect = 0.003
Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 16/144 (11%)
Query: 5 GVGILIL---NQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI 61
G+ +I + + + +R + + W + G + E DAA R L E TG+
Sbjct: 15 GIDCIIFGFNEGEISLLLLKR---NFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGL 71
Query: 62 KSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFD 121
+++ + G P + A+ +E + +
Sbjct: 72 ENVYMEQVGAFGAIDRDPGERVV----------SIAYYALININEYDRELVQKHNAYWVN 121
Query: 122 AWTWVSLWDTPNIVVDFKKEAYRQ 145
+L +VD +E +Q
Sbjct: 122 INELPALIFDHPEMVDKAREMMKQ 145
>3cou_A Nudix motif 16, nucleoside diphosphate-linked moiety X motif 16;
hydrolase, NUDT16, mRNA decapping, mRNA turnover,
structural genomics consortium; 1.80A {Homo sapiens}
Length = 217
Score = 36.1 bits (83), Expect = 0.004
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 33 LWQMPQGGINPQEDPL-DAAYRELYEETGI 61
P G ++ Q+ L D REL EE G
Sbjct: 76 RLGFPGGFVDTQDRSLEDGLNRELREELGE 105
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT
family, riken structural genomics/proteomics
initiative, RSGI; HET: APR; 1.65A {Thermus
thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A
1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A
1v8u_A
Length = 170
Score = 35.8 bits (82), Expect = 0.004
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 2 YRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI 61
++ V ++ L + +++V + ++P G I P EDPL+AA REL E+TG+
Sbjct: 33 HKPAVAVIALREGRMLFVRQMRPAVGLAP---LEIPAGLIEPGEDPLEAARRELAEQTGL 89
Query: 62 K 62
Sbjct: 90 S 90
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protein
structure initiative, midwest center for structural
genomics; 2.00A {Nitrosomonas europaea atcc 19718}
Length = 189
Score = 33.0 bits (74), Expect = 0.035
Identities = 14/116 (12%), Positives = 25/116 (21%), Gaps = 21/116 (18%)
Query: 23 CFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQGDSYIQYDFPAHC 82
C + W +P G + E + A RE EE
Sbjct: 56 CKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEAN---------------------A 94
Query: 83 IQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWTWVSLWDTPNIVVDF 138
E + + + + + E + P + F
Sbjct: 95 RVEIRELYAVYSLPHISQVYMLFRAKLLDLDFFPGIESLEVRLFGEQEIPWNDIAF 150
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH
domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A*
3gz8_A*
Length = 240
Score = 32.7 bits (74), Expect = 0.040
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 10/85 (11%)
Query: 6 VGILIL---NQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQ--EDPLDAAYRELYEETG 60
V ++ +Q V + +R N+ L LW +P G I+ E R+L E+T
Sbjct: 25 VDAVLFTYHDQQLKVLLVQR---SNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTA 81
Query: 61 --IKSISLLGQGDSYIQYDFPAHCI 83
I L + +
Sbjct: 82 VVPPYIEQLCTVGNNSRDARGWSVT 106
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis,
cholesterol biosynthesis, isoprene biosynthesis, lipid
synthesis, peroxisome; HET: GOL; 1.81A {Homo sapiens}
Length = 246
Score = 31.6 bits (71), Expect = 0.084
Identities = 16/139 (11%), Positives = 37/139 (26%), Gaps = 18/139 (12%)
Query: 1 MYRRGVGILILNQDDLVWVGRRCFH----DNNKHLSLWQMPQGGINPQEDPL-----DAA 51
+ R +++ N + + + +R S P E+ AA
Sbjct: 68 LLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAA 127
Query: 52 YRELYEETGIKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDR 111
R L E GI + + + + + + + +
Sbjct: 128 QRRLQAELGIPGEQISPEDIVF----MTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNP- 182
Query: 112 TAYGYESEFDAWTWVSLWD 130
SE + ++S +
Sbjct: 183 ----DPSETKSILYLSQEE 197
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 2006
Score = 28.8 bits (64), Expect = 0.63
Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 40/146 (27%)
Query: 22 RCFHDNNKH------------LSLWQMPQGGINPQEDPLDAAYRELYEETGIKSISLLGQ 69
+ F + N+H LS Q Q + E AA+ +L KS L+
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK---AAFEDL------KSKGLI-P 1754
Query: 70 GDSYIQYDFPAHCIQENGYVGQMQKWFAFR-------FQGLTSEICVDRTAYGYESEFDA 122
D+ F H + E + + + ++G+T ++ V R G +
Sbjct: 1755 ADA----TFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN---- 1806
Query: 123 WTWVSLWDTPN-IVVDFKKEAYRQVV 147
+ +++ P + F +EA + VV
Sbjct: 1807 YGMIAI--NPGRVAASFSQEALQYVV 1830
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation,
RNA-binding, structural genomics consortium, SGC, RNA
degradation; 1.70A {Homo sapiens}
Length = 214
Score = 25.9 bits (57), Expect = 3.9
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 9/45 (20%)
Query: 29 KHLSLWQM--------PQGGINPQEDPLDAAY-RELYEETGIKSI 64
+ L QM P G ++ + L+ R L G +
Sbjct: 43 RFSVLMQMRFDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRL 87
>1af6_A Maltoporin, LAMB; membrane protein, specific porin, beta barrel,
sugar transport, sucrose; HET: GLC FRU; 2.40A
{Escherichia coli} SCOP: f.4.3.2 PDB: 1mal_A 1mpm_A*
1mpn_A* 1mpo_A* 1mpq_A* 2mpr_A* 1mpr_A*
Length = 421
Score = 25.4 bits (55), Expect = 6.1
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLW 34
+G ++ +W G+R + ++ H+ +
Sbjct: 84 ANVQGKNLIEWLPGSTIWAGKRFYQRHDVHMIDF 117
>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A,
structural genomics, joint center for structural
genomics, JCSG; 2.39A {Shewanella denitrificans}
Length = 395
Score = 25.0 bits (54), Expect = 7.4
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 11/125 (8%)
Query: 8 ILILNQDDLVWVGRRC---FHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGIKSI 64
+ +N D V R + N+ WQ P + + P ETG+ +
Sbjct: 222 VPNMNPDGSVRGHLRTNAVGANLNRE---WQTP----SLERSPEVYYVVNKMHETGVD-L 273
Query: 65 SLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEFDAWT 124
GD + Y F A C Y ++ L+ +T +GY+ +
Sbjct: 274 FYDVHGDEGLPYVFLAGCEGIPNYSDKLASLQQDFVAALSLASADFQTEFGYDKDEPGKA 333
Query: 125 WVSLW 129
+++
Sbjct: 334 NLTVA 338
>1ha0_A Protein (hemagglutinin precursor); glycoprotein, membrane-fusion
precursor, virus/viral protein; HET: NAG BMA MAN; 2.80A
{Influenza a virus} SCOP: b.19.1.2 h.3.1.1
Length = 494
Score = 24.7 bits (53), Expect = 10.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 85 ENGYVGQMQKWFAFRFQ 101
ENG+ G + W+ FR Q
Sbjct: 332 ENGWEGMIDGWYGFRHQ 348
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.140 0.457
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,504,138
Number of extensions: 65528
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 70
Length of query: 160
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 75
Effective length of database: 3,632,490
Effective search space: 272436750
Effective search space used: 272436750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)