BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780557|ref|YP_003064970.1| dinucleoside polyphosphate
hydrolase [Candidatus Liberibacter asiaticus str. psy62]
(160 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780557|ref|YP_003064970.1| dinucleoside polyphosphate hydrolase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 160
Score = 337 bits (863), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60
MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG
Sbjct: 1 MYRRGVGILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETG 60
Query: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120
IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF
Sbjct: 61 IKSISLLGQGDSYIQYDFPAHCIQENGYVGQMQKWFAFRFQGLTSEICVDRTAYGYESEF 120
Query: 121 DAWTWVSLWDTPNIVVDFKKEAYRQVVADFAYLIKSEPMG 160
DAWTWVSLWDTPNIVVDFKKEAYRQVVADFAYLIKSEPMG
Sbjct: 121 DAWTWVSLWDTPNIVVDFKKEAYRQVVADFAYLIKSEPMG 160
>gi|254780325|ref|YP_003064738.1| mutator MutT protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 141
Score = 33.1 bits (74), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 12/88 (13%)
Query: 23 CFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI--KSISLLGQGDSYIQYD--- 77
C + H W+ P G I E P +A REL+EE I K SL+ Y+
Sbjct: 28 CRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFH 87
Query: 78 -----FPAHCIQ--ENGYVGQMQKWFAF 98
F HC + GQ +W A
Sbjct: 88 LLMPFFVCHCFEGIPQSCEGQQLQWVAL 115
>gi|254780500|ref|YP_003064913.1| hypothetical protein CLIBASIA_01935 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 159
Score = 27.3 bits (59), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 15/85 (17%)
Query: 61 IKSISLLGQGDSYIQ----YDFPAHCIQENG-------YVGQMQKWFAFRF-QGLTSEIC 108
+ +ISL+ QG S P+ I NG YV Q +KWF +F E
Sbjct: 46 MSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYI 105
Query: 109 VDRTAYGYESEFDAWTWVSLWDTPN 133
V + +G E + VS+ PN
Sbjct: 106 VLKITFG---EKGVVSSVSMERLPN 127
>gi|254780449|ref|YP_003064862.1| hypothetical protein CLIBASIA_01670 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 459
Score = 25.4 bits (54), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 8 ILILNQDDLVWVGRRCFHDNNKHLSLWQMPQGGINPQEDPLDAAY 52
IL LN+ ++ G++ DN+ M Q NP++ L ++Y
Sbjct: 325 ILDLNRASFIFNGKKLARDNSAEAIQKLMNQFAKNPKQLQLISSY 369
>gi|254780957|ref|YP_003065370.1| dihydrofolate reductase protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 176
Score = 24.6 bits (52), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 19 VGRRCFHDNNKHLSLWQMPQGGINPQ----EDPLDAAYRELYEETGIKSISLLGQGDSYI 74
+GR N ++ + +NP+ LD+ +L +TG K I ++G G+ Y
Sbjct: 54 IGRLLPGRTNIIITRDNTRRASVNPEAVLASSILDSL--DLASKTGSKKIFIIGGGEIYA 111
Query: 75 QYDFPAHCIQENGYVGQMQK 94
Q AH + Y+ ++K
Sbjct: 112 QTISLAHTL----YITHIEK 127
>gi|254780949|ref|YP_003065362.1| tyrosyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 418
Score = 21.9 bits (45), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 57 EETGIKSISLLGQGDSYI 74
++TG K ISL+G G S I
Sbjct: 64 QKTGHKPISLMGGGTSII 81
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.140 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,341
Number of Sequences: 1233
Number of extensions: 4549
Number of successful extensions: 10
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 160
length of database: 328,796
effective HSP length: 67
effective length of query: 93
effective length of database: 246,185
effective search space: 22895205
effective search space used: 22895205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 35 (18.1 bits)