HHsearch alignment for GI: 254780558 and conserved domain: COG5478

>COG5478 Predicted small integral membrane protein [Function unknown].
Probab=93.45  E-value=0.18  Score=28.96  Aligned_cols=61  Identities=20%  Similarity=0.285  Sum_probs=51.4

Q ss_pred             EEECC--CCCHHHHHHHHHHHHH-HHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCE-EEEHH
Q ss_conf             88628--9999999999999999-99871948999808878899999997568876918-99677
Q gi|254780558|r  326 LYLDD--QVDRDKIREKLKGLEE-IARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVS-VVPLS  386 (396)
Q Consensus       326 vfLD~--~~~~~~I~~qL~~l~~-~Ar~~G~AI~igh~~p~Ti~~L~~w~~~l~~~gi~-lVpvS  386 (396)
T Consensus        63 ~liQNtq~rD~aai~aKLDElir~~~e~~n~~VgIEh~~~~~i~~~~~~~e~~a~~~~g~~~~~~  127 (141)
T COG5478          63 VLIQNTQNRDTAAIQAKLDELIRSLREARNDVVGIEHLKPEEIEEIRDRLEDEAGTGDGVPTSVA  127 (141)
T ss_pred             HHEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf             62225442428999999999999712366762101038888999999999998267988433099