HHsearch alignment of GI: 254780558 and MMDB domain: 2nly_A_

>2nly_A (A:) BH1492 protein, divergent polysaccharide deacetylase hypothetical protein; PFAM04748, structural genomics, PSI, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=99.88  E-value=4.6e-20  Score=145.89  Aligned_cols=224  Identities=20%  Similarity=0.310  Sum_probs=210.6

Q ss_pred             CCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             66865899973778771688999983793508987089876899999999859929998176656898778785544678
Q gi|254780558|r  168 ASGARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVT  247 (396)
Q Consensus       168 a~~~riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~  247 (396)
                      ++.+.|||.+||.|.+.... +.+.+...+.||.+........+.+++..+.||||-.|--..+......+.+....+..
T Consensus         1 ~~~~~valTfDD~~~~~~il-~~L~~~~ikaTfFv~g~~~~~p~~~~~~~~~GhEIg~Ht~~H~~~~~~~~~~~~~~~~~   79 (245)
T 2nly_A            1 GEMKRAAIIIDDFGGDVKGV-DDFLTGEIPVTVAVMPFLEHSTKQAEIAQAAGLEVIVHMPLEPKKGKISWLGPSGITSN   79 (245)
T ss_dssp             --CEEEEEEEEEESSCCTTH-HHHHTCSSCEEEEECSSSTTHHHHHHHHHHTTCEEEEEEEECCC--------CCCBCTT
T ss_pred             CCCCEEEEEEECCCCCHHHH-HHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             99778999995699996789-99974899879998589866599999999869978885466754323467675545444


Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEE
Q ss_conf             99899999999999855893598001230000498999999999850692899749763226789898709946984588
Q gi|254780558|r  248 QTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLY  327 (396)
Q Consensus       248 ~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvf  327 (396)
                      ++.+++++.+......+..++|..++.+.+...+...|..........+..|.+......+.....+...+++....+.+
T Consensus        80 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (245)
T 2nly_A           80 LSVGEVKSRVRKAFDDIPYAVGLNNHMGSKIVENEKIMRAILEVVKEKNAFIIDSGTSPHSLIPQLAEELEVPYATRSIF  159 (245)
T ss_dssp             CCHHHHHHHHHHHHHHSTTCCEEEEEECTTGGGCHHHHHHHHHHHHHTTCEEEECCCCSSCSHHHHHHHTTCCEEECCEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHCCCCEEEEEEC
T ss_conf             89999999999999876542150146665331566889999998552884225886640189999999769817999862


Q ss_pred             ECCC-CCHHHHHHHHHHHHHHHHHCCEEEEEEEC---CHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCC
Q ss_conf             6289-99999999999999999871948999808---87889999999756887691899677743064
Q gi|254780558|r  328 LDDQ-VDRDKIREKLKGLEEIARTTGQAIGVAVA---FDESIEVISQWLQQEHVRDVSVVPLSCLAKLS  392 (396)
Q Consensus       328 LD~~-~~~~~I~~qL~~l~~~Ar~~G~AI~igh~---~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~  392 (396)
                      +|.. .+......++.++...++++|..|.+.|-   ++.|+++|..|+..++++|+.+|+++++++..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~k~~g~~fvt~~e~~~~~  228 (245)
T 2nly_A          160 LDNTHSSRKEVIKNMRKLAKKAKQGSEPIGIGHVGVRGDETYAGIRSMLDEFQAESIQLVPVSQLLPSP  228 (245)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHHTTSCCEEEEECSTTHHHHHHHHGGGHHHHHHTTEEECCGGGGCC--
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCH
T ss_conf             432223406899999999998315897059864799956899999999999997990999889952762