HHsearch results for GI: 254780558 and protein with PDBid: 2c71_A
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A
Probab=97.97 E-value=3.6e-05 Score=50.95 Aligned_cols=173 Identities=13% Similarity=0.085 Sum_probs=102.2
Q ss_pred CEEEEEECCCCCCCHHHH---HHHHHCCCCCEEEEEC-CC-CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 658999737787716889---9998379350898708-98-768999999998599299981766568987787855446
Q gi|254780558|r 171 ARIAIVVSGLGISQTGTQ---RAINLLPANITLAFAS-NG-NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLK 245 (396)
Q Consensus 171 ~riAIVIddlG~~~~~~~---~ai~~LP~~vT~A~~P-~~-~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~ 245 (396)
..|||-+||- .+...+. +.+.+.-.+.||-+.- +. ....+++++..+.||||--|- |.. .-+
T Consensus 5 K~VaLTfDDg-p~~~~t~~il~~L~~~~v~aTFFv~G~~~~~~~~~~~~~~~~~GheIgnHt------~~H------~~~ 71 (216)
T 2c71_A 5 KLVALTFDDG-PDNVLTARVLDKLDKYNVKATFMVVGQRVNDSTAAIIRRMVNSGHEIGNHS------WSY------SGM 71 (216)
T ss_dssp CEEEEEEESC-CCHHHHHHHHHHHHHHTCCCEEEECGGGCSHHHHHHHHHHHHTTCEEEECC------SSS------SCC
T ss_pred CEEEEEEECC-CCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEECCC------CCC------CCH
T ss_conf 9999988579-980409999999998698199998162302260999999998799785367------766------783
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEC----CCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCE
Q ss_conf 7899899999999999855893598001----230000498999999999850692899749763226789898709946
Q gi|254780558|r 246 VTQTVQQLLNRLRYSLRRGTGYFGVMNY----RGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPY 321 (396)
Q Consensus 246 ~~~~~~~~~~~l~~~l~~~p~~vGvnNh----mGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~ 321 (396)
..++.++++..+..+...+-...|..-. -++.+ +.. +++.++ ..+.-+..+
T Consensus 72 ~~~s~~~~~~ei~~~~~~l~~~~G~~~~~fR~P~g~~--~~~----~~~~~~---~~~~~~i~~---------------- 126 (216)
T 2c71_A 72 ANMSPDQIRKSIADTNAVIQKYAGTTPKFFRPPNLET--SPT----LFNNVD---LVFVGGLTA---------------- 126 (216)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHSCCCSEECCGGGCC--CHH----HHHHCC---SEEBCCBCC----------------
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHH--CHH----HHHHHH---HHHHCCCCC----------------
T ss_conf 4429999999999999999997599973696897100--699----999997---897557300----------------
Q ss_pred EEEEEEEC--CCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC----CHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCC
Q ss_conf 98458862--8999999999999999999871948999808----87889999999756887691899677743064
Q gi|254780558|r 322 MVADLYLD--DQVDRDKIREKLKGLEEIARTTGQAIGVAVA----FDESIEVISQWLQQEHVRDVSVVPLSCLAKLS 392 (396)
Q Consensus 322 ~~~dvfLD--~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~----~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~ 392 (396)
.| ...+...+...+. +. -+.|. |.+.|- ...|+++|...+..++++|+++|++|+|+...
T Consensus 127 ------~Dw~~~~~~~~~~~~~~---~~-~k~g~-IvL~Hd~~~~~~~t~~aL~~li~~lk~~Gy~fvtl~ell~~~ 192 (216)
T 2c71_A 127 ------NDWIPSTTAEQRAAAVI---NG-VRDGT-IILLHDVQPEPHPTPEALDIIIPTLKSRGYEFVTLTELFTLK 192 (216)
T ss_dssp ------STTCTTSCHHHHHHHHH---HH-CCTTB-EEEEESCCSSSCCHHHHHHHHHHHHHHTTCEECCHHHHHHHH
T ss_pred ------CCCCCCCCHHHHHHHHH---CC-CCCCE-EEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCC
T ss_conf ------21777887899999997---27-79994-999779999720699999999999997899998889986176