Query         gi|254780558|ref|YP_003064971.1| hypothetical protein CLIBASIA_02225 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 396
No_of_seqs    176 out of 400
Neff          6.1 
Searched_HMMs 23785
Date          Tue May 31 19:46:26 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780558.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2qv5_A AGR_C_5032P, uncharacte 100.0       0       0  555.5  27.1  245  149-393     2-252 (261)
  2 2nly_A BH1492 protein, diverge 100.0       0       0  311.2  23.5  222  170-392     3-228 (245)
  3 2vyo_A ECU11_0510, chitooligos  98.9 7.4E-09 3.1E-13   74.2   9.5  188  169-392    24-219 (254)
  4 2j13_A Polysaccharide deacetyl  98.5 1.8E-06 7.6E-11   59.1  10.9  183  171-394    55-247 (247)
  5 2c1i_A Peptidoglycan glcnac de  98.4 0.00012 5.1E-09   47.6  18.3  176  170-394   235-421 (431)
  6 2iw0_A Chitin deacetylase; hyd  98.4 4.1E-05 1.7E-09   50.6  15.6  184  171-392    42-241 (254)
  7 2cc0_A Acetyl-xylan esterase;   98.3 8.4E-05 3.5E-09   48.6  15.5  171  170-390     4-187 (195)
  8 1ny1_A Probable polysaccharide  98.2 2.7E-05 1.1E-09   51.7  11.2  179  171-390    43-231 (240)
  9 2w3z_A Putative deacetylase; P  98.0 2.5E-05   1E-09   52.0   7.7  189  172-385   108-310 (311)
 10 2c71_A Glycoside hydrolase, fa  98.0 3.6E-05 1.5E-09   50.9   8.4  173  171-392     5-192 (216)
 11 1v6t_A Hypothetical UPF0271 pr  97.0   0.017 7.1E-07   34.1  16.2  196  178-390     7-255 (255)
 12 3cl6_A PUUE allantoinase; URIC  96.8  0.0052 2.2E-07   37.3   7.7  188  186-390    85-295 (308)
 13 2i5i_A UPF0249 protein EF_3048  96.3   0.055 2.3E-06   30.9  17.8  213  172-388     6-261 (263)
 14 2dfa_A Hypothetical UPF0271 pr  95.3    0.15 6.2E-06   28.1  10.8  191  178-384     7-249 (250)
 15 1xw8_A UPF0271 protein YBGL; N  95.1   0.063 2.6E-06   30.5   6.6  194  178-386     7-246 (252)
 16 3hft_A WBMS, polysaccharide de  89.0     1.1 4.5E-05   22.7   7.0  109  172-302    38-149 (257)
 17 2hk0_A D-psicose 3-epimerase;   86.7     1.5 6.3E-05   21.8  11.0  149  206-384    35-202 (309)
 18 2r6a_A DNAB helicase, replicat  84.9     1.8 7.6E-05   21.3   9.8  127  214-361   226-364 (454)
 19 2q6t_A DNAB replication FORK h  78.5     3.1 0.00013   19.8  10.3  125  214-363   223-365 (444)
 20 1nlf_A Regulatory protein REPA  77.5     3.3 0.00014   19.6  10.5  100  244-363    74-183 (279)
 21 2x5e_A UPF0271 protein PA4511;  70.1       5 0.00021   18.5  12.9  145  176-331    11-178 (252)
 22 2e67_A Hypothetical protein TT  67.1     5.8 0.00024   18.1  10.5  172  172-361    14-217 (264)
 23 2zvr_A Uncharacterized protein  63.4     6.8 0.00028   17.7   6.9   81  209-302   115-203 (290)
 24 3iix_A Biotin synthetase, puta  61.6     7.3 0.00031   17.4   9.9  164  218-388    46-230 (348)
 25 1byr_A Protein (endonuclease);  59.6     7.9 0.00033   17.2   7.5   82  194-297     1-82  (155)
 26 3bij_A Uncharacterized protein  59.3       8 0.00034   17.2   5.0   69  172-265     4-72  (285)
 27 2pju_A Propionate catabolism o  55.1     9.4 0.00039   16.8   7.3   96  243-350    85-197 (225)
 28 1fob_A Beta-1,4-galactanase; B  54.6     9.5  0.0004   16.7   5.6   69  207-278    60-141 (334)
 29 2q5c_A NTRC family transcripti  45.5      13 0.00056   15.8   6.7   99  243-352    73-188 (196)
 30 2qul_A D-tagatose 3-epimerase;  45.4      13 0.00056   15.8  11.8   22  337-358   131-152 (290)
 31 1kpg_A CFA synthase;, cyclopro  45.0     9.7 0.00041   16.7   2.2  168  175-378    68-246 (287)
 32 1nxi_A Conserved hypothetical   44.4      14 0.00058   15.7   3.2   94  250-353    18-113 (132)
 33 2ohh_A Type A flavoprotein FPR  43.9      14 0.00059   15.7   7.4  162  203-384   204-375 (404)
 34 2k6x_A Sigma-A, RNA polymerase  43.4     4.2 0.00018   19.0   0.1   52  335-386     5-63  (72)
 35 3igs_A N-acetylmannosamine-6-p  41.9      15 0.00063   15.5   8.1  132  190-349    96-231 (232)
 36 2dt8_A DEGV family protein; fa  41.3      15 0.00065   15.4   5.0   57  330-389   200-264 (280)
 37 1jxh_A Phosphomethylpyrimidine  40.4      16 0.00067   15.3   3.9   11  260-270   187-197 (288)
 38 1q1g_A Uridine phosphorylase p  38.9      14 0.00059   15.7   2.2   77  250-331   133-211 (276)
 39 1qgo_A CBIK protein, anaerobic  37.0      18 0.00075   15.0  15.6  186  172-385     2-234 (264)
 40 2b94_A Purine nucleoside phosp  33.9      20 0.00084   14.7   2.9   78  249-331   153-232 (267)
 41 3obe_A Sugar phosphate isomera  32.2      21  0.0009   14.5   9.3   47  330-380   255-303 (305)
 42 2q02_A Putative cytoplasmic pr  31.7      22 0.00092   14.4  11.0   12  212-223    90-101 (272)
 43 1q57_A DNA primase/helicase; d  31.7      22 0.00092   14.4   7.5  111  245-362   278-405 (503)
 44 1ccw_A Protein (glutamate muta  31.4     4.2 0.00018   19.0  -1.5  106  208-343    19-132 (137)
 45 2vf7_A UVRA2, excinuclease ABC  30.6      23 0.00096   14.3   3.3   95  279-375   701-805 (842)
 46 3dx5_A Uncharacterized protein  30.2      23 0.00097   14.3   6.9   48  329-383   231-278 (286)
 47 2v5j_A 2,4-dihydroxyhept-2-ENE  29.7      24 0.00099   14.2   8.0   87  279-387   173-259 (287)
 48 2vws_A YFAU, 2-keto-3-deoxy su  29.5      24   0.001   14.2   7.3   87  279-387   152-238 (267)
 49 1zym_A Enzyme I; phosphotransf  28.3      25   0.001   14.1   3.4   50  275-324   155-204 (258)
 50 3egl_A DEGV family protein; al  26.4      27  0.0011   13.9   7.0   79  311-389   160-247 (277)
 51 3hem_A Cyclopropane-fatty-acyl  25.9      27  0.0012   13.8   3.6  170  174-378    75-261 (302)
 52 1ysq_A HTH-type transcriptiona  24.9      29  0.0012   13.7   2.1   78  242-326    71-150 (193)
 53 3kws_A Putative sugar isomeras  24.9      29  0.0012   13.7  13.8   83  209-301   106-198 (287)
 54 2i1a_A DNA damage-inducible pr  24.6      20 0.00085   14.6   1.0   25  296-320    38-62  (148)
 55 2g0w_A LMO2234 protein; putati  24.4      29  0.0012   13.6   9.3   78  208-302   106-184 (296)
 56 3bh0_A DNAB-like replicative h  24.4      29  0.0012   13.6  11.0  152  169-362    66-232 (315)
 57 3on5_A BH1974 protein; structu  24.0      30  0.0013   13.6   6.9   79  196-277   198-297 (362)
 58 1izc_A Macrophomate synthase i  23.7      30  0.0013   13.5   5.4  143  207-386   104-274 (339)
 59 3igz_B Cofactor-independent ph  23.6      30  0.0013   13.5  10.2   33  242-274   390-422 (561)
 60 1dxe_A 2-dehydro-3-deoxy-galac  23.2      31  0.0013   13.5   6.6   87  279-387   152-238 (256)
 61 3gk0_A PNP synthase, pyridoxin  23.1      31  0.0013   13.5   7.0  181  171-376    32-238 (278)
 62 3ddo_A Urdpase, upase, uridine  21.8      33  0.0014   13.3   4.4   83  249-335   132-227 (253)
 63 2oq2_A Phosphoadenosine phosph  21.7      33  0.0014   13.3   3.7   78  254-336    31-117 (261)
 64 2qf7_A Pyruvate carboxylase pr  21.7      33  0.0014   13.3   6.6   21  207-227   672-692 (1165)
 65 1iuq_A Glycerol-3-phosphate ac  21.4      33  0.0014   13.3   4.0  105  257-362   175-311 (367)
 66 2fds_A Orotidine-monophosphate  21.3      34  0.0014   13.2  10.8  132  209-374   140-279 (352)
 67 2p8b_A Mandelate racemase/muco  21.3      34  0.0014   13.2  10.0  132  207-365   143-301 (369)
 68 1uas_A Alpha-galactosidase; TI  21.3      27  0.0011   13.9   1.1   20  208-227    75-94  (362)
 69 2ew9_A Copper-transporting ATP  20.9      34  0.0014   13.2   9.0  120  172-297     5-143 (149)
 70 3lup_A DEGV family protein; PS  20.9      34  0.0014   13.2   5.1   81  309-389   179-268 (285)
 71 2fym_A Enolase; RNA degradosom  20.6      35  0.0015   13.2  11.9  108  248-364   267-374 (431)
 72 2b0t_A NADP isocitrate dehydro  20.6      34  0.0014   13.2   1.5  174  206-383   231-513 (738)
 73 1m5w_A Pyridoxal phosphate bio  20.5      35  0.0015   13.1   7.3   96  275-375   106-209 (243)
 74 3pe5_A Uncharacterized protein  20.0      18 0.00075   15.0   0.0   20  276-295   259-278 (403)

No 1  
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein structure initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=100.00  E-value=0  Score=555.52  Aligned_cols=245  Identities=41%  Similarity=0.645  Sum_probs=235.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCC------CCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             65646743455332112346------686589997377877168899998379350898708987689999999985992
Q gi|254780558|r  149 KVGREDTEVPAMDKNFCSNA------SGARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQE  222 (396)
Q Consensus       149 ~~g~~P~~~~~~~~~~~~~a------~~~riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~E  222 (396)
                      ..|++|.+..++.+|+..||      .+|+|||||||+|++...+.++|.+||++|||||+||.+++++|++.||++|||
T Consensus         2 ~~g~lP~~~~~~~~P~~~~a~P~~~~~~p~iAIVIDD~G~~~~~~~~ai~~Lp~pvT~Ai~P~~~~~~~~a~~ar~~G~E   81 (261)
T 2qv5_A            2 SLGQLPVVGADGLRPMEQYARPWSGARGTRVAIVVGGLGLSQTGSQKAIRDLPPEVTLGFAASGNSLQRWMQDARREGHE   81 (261)
T ss_dssp             -CCSCCCCCTTCCCHHHHTCCCCCCCSSEEEEEEEEEETSCHHHHHHHHHHSCTTSEEEEETTCSSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCE
T ss_conf             87889988888999466426889988886699999579999378999998589973799878997779999999977987


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             99981766568987787855446789989999999999985589359800123000049899999999985069289974
Q gi|254780558|r  223 AILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDD  302 (396)
Q Consensus       223 vllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs  302 (396)
                      |||||||||++|+..||||++|+++|++++|+++|+|+|+++|+|+||||||||+||+|+..|++||++|++||||||||
T Consensus        82 vllhlPMep~~~~~~~~gp~~L~~~~~~~~i~~~l~~~l~~vP~avGvnNhmGS~~t~~~~~m~~v~~~l~~~gL~fvDS  161 (261)
T 2qv5_A           82 ILLQIPLEPFGYPGTNPGPDTLLAGDPAKVNIDRLHRSMAKITNYTGVMNYLGGRFLAEQSALEPVMRDIGKRGLLFLDD  161 (261)
T ss_dssp             EEEEEEECCTTTTTSCCCTTCBCTTSCHHHHHHHHHHHHTTCCCCSEEEEEECTTGGGCHHHHHHHHHHHHHTTCEEEEC
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf             99976667668887888855456678899999999999986986299834655201269899999999998779889946


Q ss_pred             CCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             97632267898987099469845886289999999999999999998719489998088788999999975688769189
Q gi|254780558|r  303 GSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVSV  382 (396)
Q Consensus       303 ~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p~Ti~~L~~w~~~l~~~gi~l  382 (396)
                      +|+++|++.++|++.|+|+++||+||||++++++|++||++++++||++|+||+|||+||+||++|++|+++++++||+|
T Consensus       162 ~T~~~Sva~~~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Ighp~p~Tl~~L~~w~~~l~~~gi~l  241 (261)
T 2qv5_A          162 GSSAQSLSGGIAKAISAPQGFADVLLDGEVTEASILRKLDDLERIARRNGQAIGVASAFDESIAAISKWSREAGGRGIEI  241 (261)
T ss_dssp             SCCTTCCHHHHHHHHTCCEEECSEETTSSCSHHHHHHHHHHHHHHHHHHSEEEEEEECCHHHHHHHHHHHHHGGGGTEEE
T ss_pred             CCCCCCHHHHHHHHCCCCEEEECEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCEEE
T ss_conf             99877489999997599865402425899999999999999999998759589997899899999999716777688699


Q ss_pred             EEHHHHHHCCC
Q ss_conf             96777430647
Q gi|254780558|r  383 VPLSCLAKLSS  393 (396)
Q Consensus       383 VpvS~l~~~~~  393 (396)
                      ||+|+|++..+
T Consensus       242 VpvS~Ll~~~~  252 (261)
T 2qv5_A          242 VGVSALVSGQA  252 (261)
T ss_dssp             CCHHHHC----
T ss_pred             EEHHHHHHHCC
T ss_conf             98899742003


No 2  
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical protein; PFAM04748, structural genomics, PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=100.00  E-value=0  Score=311.23  Aligned_cols=222  Identities=20%  Similarity=0.314  Sum_probs=212.2

Q ss_pred             CCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             86589997377877168899998379350898708987689999999985992999817665689877878554467899
Q gi|254780558|r  170 GARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQT  249 (396)
Q Consensus       170 ~~riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~  249 (396)
                      ..+|||+|||+|++...+.+ |.+++.++||+|+|+.++..++++++++.||||++|+||+|..+..+++++++|..+++
T Consensus         3 ~K~vALt~DD~G~~~~~~~~-ll~~~v~aTffv~~~~~~~~~~~~~~~~~Ghei~~H~~~h~~~~~~~~~~~~~l~~~~~   81 (245)
T 2nly_A            3 MKRAAIIIDDFGGDVKGVDD-FLTGEIPVTVAVMPFLEHSTKQAEIAQAAGLEVIVHMPLEPKKGKISWLGPSGITSNLS   81 (245)
T ss_dssp             CEEEEEEEEEESSCCTTHHH-HHTCSSCEEEEECSSSTTHHHHHHHHHHTTCEEEEEEEECCC--------CCCBCTTCC
T ss_pred             CCEEEEEEECCCCCHHHHHH-HHCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             77899999469999578999-97389987999868985668999999986996788646565545556666554653159


Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEEC
Q ss_conf             89999999999985589359800123000049899999999985069289974976322678989870994698458862
Q gi|254780558|r  250 VQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLD  329 (396)
Q Consensus       250 ~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD  329 (396)
                      .+||++.+.++++++++++|+||||||++|++...|+.+++.+++++++|.|+.+..++.+..++++.|+++..+++|+|
T Consensus        82 ~~ei~~~l~~~~~~i~~a~g~~~~~~s~~t~~~~~~~~~~~~~~~~~~~frp~~~~~~~~~~~~a~~~G~~~~~~~v~~~  161 (245)
T 2nly_A           82 VGEVKSRVRKAFDDIPYAVGLNNHMGSKIVENEKIMRAILEVVKEKNAFIIDSGTSPHSLIPQLAEELEVPYATRSIFLD  161 (245)
T ss_dssp             HHHHHHHHHHHHHHSTTCCEEEEEECTTGGGCHHHHHHHHHHHHHTTCEEEECCCCSSCSHHHHHHHTTCCEEECCEESC
T ss_pred             HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHCCCEEEEEEEECC
T ss_conf             99999999998764634415424654433267788999999747587066079886247899999987971899997337


Q ss_pred             C-CCCHHHHHHHHHHHHHHHHHCCEEEEEEE---CCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCC
Q ss_conf             8-99999999999999999987194899980---887889999999756887691899677743064
Q gi|254780558|r  330 D-QVDRDKIREKLKGLEEIARTTGQAIGVAV---AFDESIEVISQWLQQEHVRDVSVVPLSCLAKLS  392 (396)
Q Consensus       330 ~-~~~~~~I~~qL~~l~~~Ar~~G~AI~igh---~~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~  392 (396)
                      + ..+...+.+++.++...|+..|.+|.|+|   +++.|+++|..|++.|+++|++||+||+|+...
T Consensus       162 d~~~~~~~~~~~~~~~~~~a~~~g~~IvL~H~~~~~~~T~eaL~~~i~~L~~~Gy~fVtlsell~~p  228 (245)
T 2nly_A          162 NTHSSRKEVIKNMRKLAKKAKQGSEPIGIGHVGVRGDETYAGIRSMLDEFQAESIQLVPVSQLLPSP  228 (245)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHTTSCCEEEEECSTTHHHHHHHHGGGHHHHHHTTEEECCGGGGCC--
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHCCH
T ss_conf             5544427899999999997441797289974799956799999999999997991999879940660


No 3  
>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi}
Probab=98.91  E-value=7.4e-09  Score=74.21  Aligned_cols=188  Identities=13%  Similarity=0.100  Sum_probs=118.2

Q ss_pred             CCCEEEEEECCCCCCCHHHH---HHHHHCCCCCEEEEEC---CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             68658999737787716889---9998379350898708---98768999999998599299981766568987787855
Q gi|254780558|r  169 SGARIAIVVSGLGISQTGTQ---RAINLLPANITLAFAS---NGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSY  242 (396)
Q Consensus       169 ~~~riAIVIddlG~~~~~~~---~ai~~LP~~vT~A~~P---~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~  242 (396)
                      ....|||-+|| |.+...|.   +.+.+--.+.||-|.-   ...+..+.+++..+.||||-.|-      |..    +.
T Consensus        24 ~~~~VaLTFDD-Gp~~~~t~~iLd~L~~~~vkATFF~~~g~~~~~~~~~~~k~~~~~GHeIgnHt------~~H----~~   92 (254)
T 2vyo_A           24 NSGMIAINFVD-GPVRGVTDRILNTLDELGVKATFSFTVNQKAVGNVGQLYRRAVEEGHNVALRV------DPS----MD   92 (254)
T ss_dssp             SSSEEEEEEES-CCCTTHHHHHHHHHHHHTCCCEEEECCSSCCCGGGTHHHHHHHHTTCEEEEEC------CGG----GT
T ss_pred             CCCEEEEEEEC-CCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHCCHHHHHHHHHCCCEEEECC------CCC----CC
T ss_conf             89989998607-99834189999999983998899997681565505999999998699799578------877----77


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCE
Q ss_conf             446789989999999999985589359800123000-0498999999999850692899749763226789898709946
Q gi|254780558|r  243 TLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAML-LSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPY  321 (396)
Q Consensus       243 ~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~-t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~  321 (396)
                      --+..++.+++++.+......+-...|....+- |+ ..+......+++.+++.|+..++.-..+.              
T Consensus        93 ~~~~~~s~~~~~~ei~~~~~~i~~~~G~~~~~f-R~Py~~g~~~~~~~~~l~~~g~~~v~w~v~~~--------------  157 (254)
T 2vyo_A           93 EGYQCLSQDALENNVDREIDTIDGLSGTEIRYA-AVPICNGQVNSEMYNILTERGVLPVGYTFCPY--------------  157 (254)
T ss_dssp             TCGGGSCHHHHHHHHHHHHHHHHHHHTSCCCEE-ECCCBTTEECHHHHHHHHTTTCEECCCSBCGG--------------
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE-ECCCCCCCCCHHHHHHHHHCCCEEEEEECCCH--------------
T ss_conf             322449999999999999999999619988778-38875788898999999977998999620521--------------


Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCC
Q ss_conf             984588628999999999999999999871948999808-87889999999756887691899677743064
Q gi|254780558|r  322 MVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVISQWLQQEHVRDVSVVPLSCLAKLS  392 (396)
Q Consensus       322 ~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~  392 (396)
                             | -.+.....+...+..  .+.++..|.+.|. ++.|+++|...++.++++|+++|.++++++-.
T Consensus       158 -------D-~~~~~~~~~~~~~~~--~~~~~g~IiL~Hd~~~~t~~aL~~iI~~lk~~Gy~fvTl~ell~~~  219 (254)
T 2vyo_A          158 -------D-YDDPVGEFESMIEGS--DPKHHSFIILMHDGQEADTSRLENMVKIGKDKGYRFVNMDECLQGY  219 (254)
T ss_dssp             -------G-SSSHHHHHHHHHHTS--CTTTCCEEEEEEGGGGSSCHHHHHHHHHHHHHTCEECCHHHHTTTC
T ss_pred             -------H-HCCCCCHHHHHHHHH--HCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCC
T ss_conf             -------2-027541799999997--2579997999768967589999999999998899998889975466


No 4  
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3
Probab=98.48  E-value=1.8e-06  Score=59.15  Aligned_cols=183  Identities=13%  Similarity=0.052  Sum_probs=110.6

Q ss_pred             CEEEEEECCCCCCCHHH---HHHHHHCCCCCEEEEEC-CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             65899973778771688---99998379350898708-987689999999985992999817665689877878554467
Q gi|254780558|r  171 ARIAIVVSGLGISQTGT---QRAINLLPANITLAFAS-NGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKV  246 (396)
Q Consensus       171 ~riAIVIddlG~~~~~~---~~ai~~LP~~vT~A~~P-~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~  246 (396)
                      -.|+|-+|| |+...-|   .+.+.+.-.+.||-+.- +.....+.+++..+.||||--|-      |...+      +.
T Consensus        55 k~V~LTFDD-G~~~~~t~~iLd~Lk~~~vkATFFv~g~~i~~~p~~~~~~~~~GheIgnHt------~~H~~------l~  121 (247)
T 2j13_A           55 KDIYLTFDN-GYENGYTGKILDVLKEKKVPATFFVTGHYIKTQKDLLLRMKDEGHIIGNHS------WSHPD------FT  121 (247)
T ss_dssp             CEEEEEEEE-SSCCSCHHHHHHHHHHHTCCEEEEECHHHHHHCHHHHHHHHHTTCEEEECC------SSCCC------GG
T ss_pred             CEEEEEEEC-CCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHCHHHHHHHHHCCCEEEECC------CCCCC------CC
T ss_conf             989998748-998564999999999869839999866245669999999985798897221------45787------43


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEE-----ECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCE
Q ss_conf             8998999999999998558935980-----01230000498999999999850692899749763226789898709946
Q gi|254780558|r  247 TQTVQQLLNRLRYSLRRGTGYFGVM-----NYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPY  321 (396)
Q Consensus       247 ~~~~~~~~~~l~~~l~~~p~~vGvn-----NhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~  321 (396)
                      .++.+++++-|..+...+-...|..     -.-++.+  ++.    +++.+++.|+-.+.-     |+            
T Consensus       122 ~ls~~~~~~ei~~~~~~l~~~~G~~~~~~~rpP~G~~--~~~----~~~~~~~~Gy~~v~w-----s~------------  178 (247)
T 2j13_A          122 AVNDEKLREELTSVTEEIKKVTGQKEVKYVRPPRGVF--SER----TLALTKEMGYYNVFW-----SL------------  178 (247)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHCCSCCCEECCGGGEE--CHH----HHHHHHHTTCEEECC-----SE------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CHH----HHHHHHHCCCEEEEC-----CC------------
T ss_conf             2328999999999999999986899888777887776--989----999999869978747-----62------------


Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCCC
Q ss_conf             984588628999999999999999999871948999808-8788999999975688769189967774306478
Q gi|254780558|r  322 MVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVISQWLQQEHVRDVSVVPLSCLAKLSSP  394 (396)
Q Consensus       322 ~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~~~  394 (396)
                      ...|--.|...+...|.+++.+    ..+.|. |.+.|. .+.|+++|...++.++++|+++|++++|++-.-|
T Consensus       179 d~~Dw~~~~~~~~~~~~~~v~~----~~~~G~-IiLlHd~~~~t~~aL~~iI~~lk~~Gy~fvtl~ell~~~~p  247 (247)
T 2j13_A          179 AFLDWKVDEQRGWQYAHNNVMT----MIHPGS-ILLLHAISKDNAEALAKIIDDLREKGYHFKSLDDLVKSNQP  247 (247)
T ss_dssp             ECCCC----------------------CCTTB-EEEECCCSTTHHHHHHHHHHHHHHTTCEEECHHHHHHTC--
T ss_pred             CCCCCCCCCCHHHHHHHHHHHH----CCCCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHCCCCC
T ss_conf             4687876553579999999994----379996-89971899479999999999999789999887996257998


No 5  
>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase, peptidoglycan deacetylase, metalloenzyme, D275N mutant, hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae} SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A
Probab=98.38  E-value=0.00012  Score=47.63  Aligned_cols=176  Identities=11%  Similarity=0.076  Sum_probs=107.4

Q ss_pred             CCEEEEEECCCCCCCHHH---HHHHHHCCCCCEEEEECC-CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             865899973778771688---999983793508987089-8768999999998599299981766568987787855446
Q gi|254780558|r  170 GARIAIVVSGLGISQTGT---QRAINLLPANITLAFASN-GNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLK  245 (396)
Q Consensus       170 ~~riAIVIddlG~~~~~~---~~ai~~LP~~vT~A~~P~-~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~  245 (396)
                      .-.||+-+||-. +...|   .+.+.+--.+.||=+.-. ...-.+.+++..+.||||-.|-      |.      +.-+
T Consensus       235 ~K~VALTFDDGP-~~~~t~~iLdiL~k~~vkATFFv~G~~~~~~p~~vr~i~~~GHeIGnHt------~s------H~~l  301 (431)
T 2c1i_A          235 QKVVALTFNDGP-NPATTPQVLETLAKYDIKATFFVLGKNVSGNEDLVKRIKSEGHVVGNHS------WS------HPIL  301 (431)
T ss_dssp             CCEEEEEEESCC-CTTTHHHHHHHHHHTTCCCEEEECGGGTTTCHHHHHHHHHTTCEEEECC------SS------CCCG
T ss_pred             CCEEEEEECCCC-CCCCHHHHHHHHHHCCCCEEEEECHHHHHHCHHHHHHHHHCCCEEECCC------CC------CCCC
T ss_conf             827999873899-8474999999999739929999737855379999999997799998588------88------7561


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEE-CC---CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCE
Q ss_conf             789989999999999985589359800-12---30000498999999999850692899749763226789898709946
Q gi|254780558|r  246 VTQTVQQLLNRLRYSLRRGTGYFGVMN-YR---GAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPY  321 (396)
Q Consensus       246 ~~~~~~~~~~~l~~~l~~~p~~vGvnN-hm---Gs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~  321 (396)
                      ..++.+++..-|..+-..+-.+.|..- ++   ++.++  ..    +   ++.-|+-++                     
T Consensus       302 ~~ls~~~~~~ei~~~~~~i~~~~G~~p~~fRpPyG~~~--~~----v---~~~lg~~~v---------------------  351 (431)
T 2c1i_A          302 SQLSLDEAKKQITDTEDVLTKVLGSSSKLMRPPYGAIT--DD----I---RNSLDLSFI---------------------  351 (431)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHSCCCCEECCGGGCCC--HH----H---HHTSSCEEE---------------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC--HH----H---HHHCCCEEE---------------------
T ss_conf             22999999999999999999965999737957854458--99----9---997599799---------------------


Q ss_pred             EEEEEE-ECC-CCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCCC
Q ss_conf             984588-628-999999999999999999871948999808-8788999999975688769189967774306478
Q gi|254780558|r  322 MVADLY-LDD-QVDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVISQWLQQEHVRDVSVVPLSCLAKLSSP  394 (396)
Q Consensus       322 ~~~dvf-LD~-~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~~~  394 (396)
                       .-++. .|- ..+...|..+...    ..+.|. |.+.|. ++.|+++|...++.|+++|+++|+|++|+.....
T Consensus       352 -~Wsvds~Dw~~~~~~~i~~~v~~----~~~~G~-IVLmHD~~~~T~~aL~~iI~~Lk~~Gy~fVTl~Ell~~~~~  421 (431)
T 2c1i_A          352 -MWDVDSLDWKSKNEASILTEIQH----QVANGS-IVLMHDIHSPTVNALPRVIEYLKNQGYTFVTIPEMLNTRLK  421 (431)
T ss_dssp             -CCSEECCHHHHCCHHHHHHHHHH----HCCTTE-EEEEETTSHHHHHHHHHHHHHHHHTTCEECCHHHHHGGGCC
T ss_pred             -EEEECCCCCCCCCHHHHHHHHHH----CCCCCE-EEEEECCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCCC
T ss_conf             -96036764577999999999983----679990-99982897519999999999999789999885895678877


No 6  
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate esterase; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3
Probab=98.37  E-value=4.1e-05  Score=50.56  Aligned_cols=184  Identities=10%  Similarity=0.040  Sum_probs=106.6

Q ss_pred             CEEEEEECCCCCCCHHHHH---HHHHCCCCCEEEEECC------CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf             6589997377877168899---9983793508987089------876899999999859929998176656898778785
Q gi|254780558|r  171 ARIAIVVSGLGISQTGTQR---AINLLPANITLAFASN------GNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDS  241 (396)
Q Consensus       171 ~riAIVIddlG~~~~~~~~---ai~~LP~~vT~A~~P~------~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp  241 (396)
                      -.|||-+|| |.+. .+.+   .+.+.-.+.||=+.-.      .....+.+++..+.||||-.|-      |...+   
T Consensus        42 ~~VaLTFDD-Gp~~-~t~~il~~L~~~~ikATFFv~G~~~~~~~~~~~p~~~k~~~~~GheIgnHt------~~H~~---  110 (254)
T 2iw0_A           42 GLVALTYDD-GPFT-FTPQLLDILKQNDVRATFFVNGNNWANIEAGSNPDTIRRMRADGHLVGSHT------YAHPD---  110 (254)
T ss_dssp             SEEEEEEES-CSCT-THHHHHHHHHHHTCCCEEEECSBSSSBTTSTTHHHHHHHHHHTTCEEEECC------SSCCC---
T ss_pred             CEEEEEEEC-CCHH-HHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCHHHHHHHHHCCCEEEECC------CCCCC---
T ss_conf             989998837-9637-199999999977993899996876564335569999999997798888506------77887---


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE----CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf             5446789989999999999985589359800----123000049899999999985069289974976322678989870
Q gi|254780558|r  242 YTLKVTQTVQQLLNRLRYSLRRGTGYFGVMN----YRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKL  317 (396)
Q Consensus       242 ~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnN----hmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~  317 (396)
                         +..++.++....+......+-...|..-    +-.+.+  +    ..+++.+++.|+-+++-  +-.|         
T Consensus       111 ---l~~ls~~~~~~ei~~~~~~l~~~~G~~p~~fR~PyG~~--~----~~~~~~l~~~G~~~v~w--~~dt---------  170 (254)
T 2iw0_A          111 ---LNTLSSADRISQMRQLEEATRRIDGFAPKYMRAPYLSC--D----AGCQGDLGGLGYHIIDT--NLDT---------  170 (254)
T ss_dssp             ---GGGSCHHHHHHHHHHHHHHHHHHHSCEESEECCGGGCC--C----HHHHHHHHHTTCEEECC--SEEC---------
T ss_pred             ---HHHCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC--C----HHHHHHHHHCCCEEEEC--CCCC---------
T ss_conf             ---43306588889999999998886197751131897876--9----89999999869989955--5144---------


Q ss_pred             CCCEEEEEEEECCC-CCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHH-HHHHHHHHHHHCCCEEEEHHHHHHCC
Q ss_conf             99469845886289-99999999999999999871948999808-878899-99999756887691899677743064
Q gi|254780558|r  318 NLPYMVADLYLDDQ-VDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIE-VISQWLQQEHVRDVSVVPLSCLAKLS  392 (396)
Q Consensus       318 gvp~~~~dvfLD~~-~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~-~L~~w~~~l~~~gi~lVpvS~l~~~~  392 (396)
                            .| +.... .+......++..-...+...+..|.+.|. ++.|+. .|...++.|+++|+++|++|+++...
T Consensus       171 ------~D-w~~~~~~~~~~~~~~i~~~~~~~~~~~g~IvL~Hd~~~~t~~~~l~~iI~~lk~~Gy~fvtl~ell~~~  241 (254)
T 2iw0_A          171 ------KD-YENNKPETTHLSAEKFNNELSADVGANSYIVLSHDVHEQTVVSLTQKLIDTLKSKGYRAVTVGECLGDA  241 (254)
T ss_dssp             ------CT-TTSCSTTTHHHHHHHHHHHSCSCGGGCCEEEEECTTSHHHHHTHHHHHHHHHHHTTCEECCHHHHTTCC
T ss_pred             ------CC-CCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCC
T ss_conf             ------21-257898605899999999986134899979993599855899999999999998799997889951736


No 7  
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=98.28  E-value=8.4e-05  Score=48.62  Aligned_cols=171  Identities=15%  Similarity=0.042  Sum_probs=108.5

Q ss_pred             CCEEEEEECCCCCCCHHHH---HHHHHCCCCCEEEEECCCCCH---HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf             8658999737787716889---999837935089870898768---9999999985992999817665689877878554
Q gi|254780558|r  170 GARIAIVVSGLGISQTGTQ---RAINLLPANITLAFASNGNSL---DRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYT  243 (396)
Q Consensus       170 ~~riAIVIddlG~~~~~~~---~ai~~LP~~vT~A~~P~~~~~---~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~  243 (396)
                      ...|||-+|| |.+.. +.   +.+.+.-.+.||=+.  +...   .+++++..+.||||-.|=      |...      
T Consensus         4 ~g~VaLTFDD-Gp~~~-~~~il~~L~~~~i~aTFFv~--g~~~~~~p~~~~~~~~~GheIg~Hs------~~H~------   67 (195)
T 2cc0_A            4 NGYVGLTFDD-GPSGS-TQSLLNALRQNGLRATMFNQ--GQYAAQNPSLVRAQVDAGMWVANHS------YTHP------   67 (195)
T ss_dssp             SEEEEEEEES-CCSTT-HHHHHHHHHHTTCCCEEEEC--HHHHHHCHHHHHHHHHTTCEEEECC------SSCC------
T ss_pred             CCEEEEEECC-CCCHH-HHHHHHHHHHCCCCEEEEEE--CHHHHHCHHHHHHHHHCCCEEECCC------CCCC------
T ss_conf             9989998737-98254-99999999987981899997--8335669999999997698842000------3471------


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEE----CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCC
Q ss_conf             46789989999999999985589359800----12300004989999999998506928997497632267898987099
Q gi|254780558|r  244 LKVTQTVQQLLNRLRYSLRRGTGYFGVMN----YRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNL  319 (396)
Q Consensus       244 L~~~~~~~~~~~~l~~~l~~~p~~vGvnN----hmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gv  319 (396)
                      -+..++.++++.-+......+-...|...    +-+..+  +.    .+++.+++.|+-++.-                 
T Consensus        68 ~~~~l~~~~~~~ei~~~~~~l~~~~G~~~~~fr~P~g~~--~~----~~~~~l~~~G~~~v~w-----------------  124 (195)
T 2cc0_A           68 HMTQLGQAQMDSEISRTQQAIAGAGGGTPKLFRPPYGET--NA----TLRSVEAKYGLTEVIW-----------------  124 (195)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHTTSCCCSEECCGGGCC--CH----HHHHHHHHTTCEECCC-----------------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC--CH----HHHHHHHHCCCEEEEE-----------------
T ss_conf             576653899999999999999997599874387898888--99----9999999879979981-----------------


Q ss_pred             CEEEEEEE-EC-CCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHHHHHHHHHHHCCCEEEEHHHHHH
Q ss_conf             46984588-62-8999999999999999999871948999808-878899999997568876918996777430
Q gi|254780558|r  320 PYMVADLY-LD-DQVDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVISQWLQQEHVRDVSVVPLSCLAK  390 (396)
Q Consensus       320 p~~~~dvf-LD-~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~  390 (396)
                           ++. -| +..+.+.|.+.+.++     ++|. |.+.|- ++.|+++|...++.++++|+++|++|+++.
T Consensus       125 -----~~~~~D~~~~~~~~i~~~~~~~-----~~G~-IiL~Hd~~~~t~~~L~~ii~~l~~~Gy~fvtl~e~~~  187 (195)
T 2cc0_A          125 -----DVDSQDWNNASTDAIVQAVSRL-----GNGQ-VILMHDWPANTLAAIPRIAQTLAGKGLCSGMISPQTG  187 (195)
T ss_dssp             -----SEECCGGGTCCHHHHHHHHHTC-----CTTC-EEEEESSCHHHHHHHHHHHHHHHHTTEEECEECTTTS
T ss_pred             -----CCCHHHHCCCCHHHHHHHHHCC-----CCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf             -----6010110210289999998465-----9892-8997399724999999999999987999997155669


No 8  
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Probab=98.18  E-value=2.7e-05  Score=51.70  Aligned_cols=179  Identities=11%  Similarity=0.036  Sum_probs=112.2

Q ss_pred             CEEEEEECCCCCCCHHH---HHHHHHCCCCCEEEEECC-CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             65899973778771688---999983793508987089-87689999999985992999817665689877878554467
Q gi|254780558|r  171 ARIAIVVSGLGISQTGT---QRAINLLPANITLAFASN-GNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKV  246 (396)
Q Consensus       171 ~riAIVIddlG~~~~~~---~~ai~~LP~~vT~A~~P~-~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~  246 (396)
                      -.|+|-+||- .+...+   ...+.+.-.+.||-+.-. .....+..++..+.||||--|-      |..      .-+.
T Consensus        43 k~V~LTFDDg-~~~~~~~~iL~~L~~~~i~aTfFv~g~~~~~~~~~~~~~~~~GheIgnHt------~~H------~~~~  109 (240)
T 1ny1_A           43 KTIYLTFDNG-YENGYTPKVLDVLKKHRVTGTFFVTGHFVKDQPQLIKRMSDEGHIIGNHS------FHH------PDLT  109 (240)
T ss_dssp             SEEEEEEEES-SCCSCHHHHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECC------SSC------CCGG
T ss_pred             CEEEEEEECC-CCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHCHHHHHHHHHCCCEEEECC------CCC------CCCC
T ss_conf             8799988589-98442899999999859988998323445559899999985898898435------556------8701


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEEEC-----CCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCE
Q ss_conf             899899999999999855893598001-----230000498999999999850692899749763226789898709946
Q gi|254780558|r  247 TQTVQQLLNRLRYSLRRGTGYFGVMNY-----RGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPY  321 (396)
Q Consensus       247 ~~~~~~~~~~l~~~l~~~p~~vGvnNh-----mGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~  321 (396)
                      .++.+++++.+...-..+-...|....     -++.+  +.    .+.+.+++.|+-.++-.  ..              
T Consensus       110 ~~s~~~~~~ei~~~~~~l~~~~G~~~~~~~rpP~g~~--~~----~~~~~l~~~Gy~~v~w~--~~--------------  167 (240)
T 1ny1_A          110 TKTADQIQDELDSVNEEVYKITGKQDNLYLRPPRGVF--SE----YVLKETKRLGYQTVFWS--VA--------------  167 (240)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHSCCCCCEECCGGGEE--CH----HHHHHHHHTTCEEBCCS--BC--------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC--CH----HHHHHHHHCCCEEEEEE--EE--------------
T ss_conf             0798999999999999999973875765886998987--78----99999998599799877--44--------------


Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHHHHHHHHHHHCCCEEEEHHHHHH
Q ss_conf             984588628999999999999999999871948999808-878899999997568876918996777430
Q gi|254780558|r  322 MVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVISQWLQQEHVRDVSVVPLSCLAK  390 (396)
Q Consensus       322 ~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~  390 (396)
                       ..|--+++..+...|..++.+   .+ +.|. |.+.|. ++.|+++|...+..|+++|+++|.+++|+.
T Consensus       168 -~~Dw~~~~~~~~~~~~~~~~~---~~-~~g~-IiL~Hd~~~~t~~aL~~ii~~lk~~Gy~fvtl~ell~  231 (240)
T 1ny1_A          168 -FVDWKINNQKGKKYAYDHMIK---QA-HPGA-IYLLHTVSRDNAEALDDAITDLKKQGYTFKSIDDLMF  231 (240)
T ss_dssp             -CSCCCGGGCCCHHHHHHHHHH---TC-CTTE-EEEECSCSTTHHHHHHHHHHHHHHHTCEEECHHHHHH
T ss_pred             -CCCCCCCCCHHHHHHHHHHHH---CC-CCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHC
T ss_conf             -688554563659999999995---67-9990-8997489956999999999999978999988699551


No 9  
>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159}
Probab=97.98  E-value=2.5e-05  Score=51.97  Aligned_cols=189  Identities=13%  Similarity=0.124  Sum_probs=115.8

Q ss_pred             EEEEEECCCCCCCHHHH---HHHHHCCCCCEEEEECC--CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             58999737787716889---99983793508987089--87689999999985992999817665689877878554467
Q gi|254780558|r  172 RIAIVVSGLGISQTGTQ---RAINLLPANITLAFASN--GNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKV  246 (396)
Q Consensus       172 riAIVIddlG~~~~~~~---~ai~~LP~~vT~A~~P~--~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~  246 (396)
                      -|+|-+|| |++..-|.   +.+.+.-.+.||-+.-.  .....+.+++..+.|||+=.|-      |...+. ..--..
T Consensus       108 ~v~LTFDD-Gp~~~~t~~iL~~L~~~~v~ATFFv~G~~i~~~~~~~~k~~~~~GheIgnHt------~~H~~~-~~~~~~  179 (311)
T 2w3z_A          108 LVFLTFDD-GVDPNMTPKILDVLAQQHVHATFFLVGCNITDKVKPILQRQITEGHALGIHS------FSHVYS-LLYPNR  179 (311)
T ss_dssp             EEEEEEEE-ECCTTHHHHHHHHHHHTTCCCEEEECGGGCCGGGHHHHHHHHHTTCEEEECC------SSCCHH-HHSGGG
T ss_pred             EEEEEEEC-CCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHCHHHHHHHHHHCCCEEEEEC------CCCCCC-CCCCCC
T ss_conf             79997717-9983318999999998599789982574343456999999997498898303------514431-017764


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEE------ECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf             8998999999999998558935980------0123000049899999999985069289974976322678989870994
Q gi|254780558|r  247 TQTVQQLLNRLRYSLRRGTGYFGVM------NYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLP  320 (396)
Q Consensus       247 ~~~~~~~~~~l~~~l~~~p~~vGvn------NhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp  320 (396)
                      ..+.+++.+-+.++...+-...|.+      -+-++.+  +...++.+-+.+...|...+|-.....-            
T Consensus       180 ~~s~~~~~~ei~~~~~~l~~~~G~~~~~~~~r~P~g~~--~~~~~~~~~~~~~~~g~~~~~w~~~~~D------------  245 (311)
T 2w3z_A          180 VGNTQQIVSEVTRTQNALKDQLGQNFKTGVWRYPGGHL--SWTGLEAADKQLAAQGIQWMDWNAAVGD------------  245 (311)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHHHCTTBCCCEECCTTCGG--GCBCCHHHHHHHHTTTCEECCCSEECCT------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC--CHHHHHHHHHHHHHCCCEEEECCCCCCC------------
T ss_conf             35899999999999999999858886541315898877--9899999999998769679954676775------------


Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEE---CCHHHHHHHHHHHHHHHHCCCEEEEH
Q ss_conf             698458862899999999999999999987194899980---88788999999975688769189967
Q gi|254780558|r  321 YMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAV---AFDESIEVISQWLQQEHVRDVSVVPL  385 (396)
Q Consensus       321 ~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh---~~p~Ti~~L~~w~~~l~~~gi~lVpv  385 (396)
                         .+.........+.+.+.++.........+..|.+.|   ..+.|+++|.+.+..|+++|+++|.+
T Consensus       246 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvLmHd~~~~~~t~~aL~~lI~~lk~~GY~F~tL  310 (311)
T 2w3z_A          246 ---AEPLATRPTTVASMLAFLDGSAKIATNPNVQVVLMHDISEKTITLASLPQIIRYYKDRGYTFAVL  310 (311)
T ss_dssp             ---TSCGGGCCCSHHHHHHHHHHHTTTCSCTTEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCEECEE
T ss_pred             ---CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             ---43346756799999999976543125799979997789994318999999999999789989974


No 10 
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A
Probab=97.97  E-value=3.6e-05  Score=50.95  Aligned_cols=173  Identities=13%  Similarity=0.085  Sum_probs=102.2

Q ss_pred             CEEEEEECCCCCCCHHHH---HHHHHCCCCCEEEEEC-CC-CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             658999737787716889---9998379350898708-98-768999999998599299981766568987787855446
Q gi|254780558|r  171 ARIAIVVSGLGISQTGTQ---RAINLLPANITLAFAS-NG-NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLK  245 (396)
Q Consensus       171 ~riAIVIddlG~~~~~~~---~ai~~LP~~vT~A~~P-~~-~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~  245 (396)
                      ..|||-+||- .+...+.   +.+.+.-.+.||-+.- +. ....+++++..+.||||--|-      |..      .-+
T Consensus         5 K~VaLTfDDg-p~~~~t~~il~~L~~~~v~aTFFv~G~~~~~~~~~~~~~~~~~GheIgnHt------~~H------~~~   71 (216)
T 2c71_A            5 KLVALTFDDG-PDNVLTARVLDKLDKYNVKATFMVVGQRVNDSTAAIIRRMVNSGHEIGNHS------WSY------SGM   71 (216)
T ss_dssp             CEEEEEEESC-CCHHHHHHHHHHHHHHTCCCEEEECGGGCSHHHHHHHHHHHHTTCEEEECC------SSS------SCC
T ss_pred             CEEEEEEECC-CCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEECCC------CCC------CCH
T ss_conf             9999988579-980409999999998698199998162302260999999998799785367------766------783


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEEC----CCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCE
Q ss_conf             7899899999999999855893598001----230000498999999999850692899749763226789898709946
Q gi|254780558|r  246 VTQTVQQLLNRLRYSLRRGTGYFGVMNY----RGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPY  321 (396)
Q Consensus       246 ~~~~~~~~~~~l~~~l~~~p~~vGvnNh----mGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~  321 (396)
                      ..++.++++..+..+...+-...|..-.    -++.+  +..    +++.++   ..+.-+..+                
T Consensus        72 ~~~s~~~~~~ei~~~~~~l~~~~G~~~~~fR~P~g~~--~~~----~~~~~~---~~~~~~i~~----------------  126 (216)
T 2c71_A           72 ANMSPDQIRKSIADTNAVIQKYAGTTPKFFRPPNLET--SPT----LFNNVD---LVFVGGLTA----------------  126 (216)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHSCCCSEECCGGGCC--CHH----HHHHCC---SEEBCCBCC----------------
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHH--CHH----HHHHHH---HHHHCCCCC----------------
T ss_conf             4429999999999999999997599973696897100--699----999997---897557300----------------


Q ss_pred             EEEEEEEC--CCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC----CHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCC
Q ss_conf             98458862--8999999999999999999871948999808----87889999999756887691899677743064
Q gi|254780558|r  322 MVADLYLD--DQVDRDKIREKLKGLEEIARTTGQAIGVAVA----FDESIEVISQWLQQEHVRDVSVVPLSCLAKLS  392 (396)
Q Consensus       322 ~~~dvfLD--~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~----~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~  392 (396)
                            .|  ...+...+...+.   +. -+.|. |.+.|-    ...|+++|...+..++++|+++|++|+|+...
T Consensus       127 ------~Dw~~~~~~~~~~~~~~---~~-~k~g~-IvL~Hd~~~~~~~t~~aL~~li~~lk~~Gy~fvtl~ell~~~  192 (216)
T 2c71_A          127 ------NDWIPSTTAEQRAAAVI---NG-VRDGT-IILLHDVQPEPHPTPEALDIIIPTLKSRGYEFVTLTELFTLK  192 (216)
T ss_dssp             ------STTCTTSCHHHHHHHHH---HH-CCTTB-EEEEESCCSSSCCHHHHHHHHHHHHHHTTCEECCHHHHHHHH
T ss_pred             ------CCCCCCCCHHHHHHHHH---CC-CCCCE-EEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCC
T ss_conf             ------21777887899999997---27-79994-999779999720699999999999997899998889986176


No 11 
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii OT3} SCOP: c.6.2.5
Probab=97.04  E-value=0.017  Score=34.08  Aligned_cols=196  Identities=15%  Similarity=0.172  Sum_probs=131.5

Q ss_pred             CCCCCCC----HHHHHHHHHCCCCCEEEEECCCCC------HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3778771----688999983793508987089876------899999999859929998176656898778785544678
Q gi|254780558|r  178 SGLGISQ----TGTQRAINLLPANITLAFASNGNS------LDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVT  247 (396)
Q Consensus       178 ddlG~~~----~~~~~ai~~LP~~vT~A~~P~~~~------~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~  247 (396)
                      -|||.+.    .+.+++|+  |+ ||-|=+.-+-+      -.+.++.|.+.|-.|=-|-     +||+.+ |=+--...
T Consensus         7 ~DlGE~~g~~~~g~D~~lm--p~-I~saNIACG~HAGD~~~m~~tv~lA~~~~V~IGAHP-----sypD~~-gFGRr~~~   77 (255)
T 1v6t_A            7 SDLGESFGRYKLGLDEEVM--KY-ITSANVACGWHAGDPLVMRKTVRLAKENDVQVGAHP-----GYPDLM-GFGRRYMK   77 (255)
T ss_dssp             EEECCCBTTBCCSCHHHHT--TT-CSEEEEECSSSSCCHHHHHHHHHHHHHTTCEEEEEC-----CCSCTT-TTTCSCCC
T ss_pred             CCCCCCCCCCCCCCCHHHH--HH-HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEECCC-----CCCCCC-CCCCCCCC
T ss_conf             0179887887888828998--67-535888507356779999999999998498782689-----977657-99999899


Q ss_pred             CCHHHHHHHHHHHHHHCCCC--------EEEEECCCC---CCCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHHHH
Q ss_conf             99899999999999855893--------598001230---0004989999999998506--9289974976322678989
Q gi|254780558|r  248 QTVQQLLNRLRYSLRRGTGY--------FGVMNYRGA---MLLSNKESAEVIFKEFAKR--GLLFFDDGSSPRNLTRVLA  314 (396)
Q Consensus       248 ~~~~~~~~~l~~~l~~~p~~--------vGvnNhmGs---~~t~~~~~m~~vl~~l~~r--gL~flDs~Ts~~Sva~~~A  314 (396)
                      ++++++.+.+..-++.+-+.        ..|--| |.   ....|+...+.+++.++..  +|.++-   -++|...++|
T Consensus        78 ~s~~el~~~i~~Qi~al~~~a~~~g~~l~hVKPH-GALYN~~~~D~~lA~ai~~ai~~~~~~l~l~~---l~~s~~~~~A  153 (255)
T 1v6t_A           78 LTPEEARNYILYQVGALYAFAKAEGLELQHVKPH-GALYNAMVKEEDLARAVIEGILDFDKDLILVT---LSNSRVADIA  153 (255)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCC-HHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEE---ETTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC-HHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEE---CCCHHHHHHH
T ss_conf             9989999999999999999999839902442312-78888886299999999999998597641753---5844999999


Q ss_pred             HHHCCCEEEEEEEECCCC-----------------CHHHHHHHHHHHHHHHHH------CCEEEE-----EE--ECCHHH
Q ss_conf             870994698458862899-----------------999999999999999987------194899-----98--088788
Q gi|254780558|r  315 PKLNLPYMVADLYLDDQV-----------------DRDKIREKLKGLEEIART------TGQAIG-----VA--VAFDES  364 (396)
Q Consensus       315 ~~~gvp~~~~dvfLD~~~-----------------~~~~I~~qL~~l~~~Ar~------~G~AI~-----ig--h~~p~T  364 (396)
                      ++.|+++.. ..|.|-.-                 |++.+   ++++.+++++      .|.-|-     ||  .-.|..
T Consensus       154 ~~~Gl~~~~-E~FADR~Y~~dG~Lv~R~~~gAvi~d~~~~---~~q~~~~~~~g~V~ti~G~~I~i~adTICvHgDtp~A  229 (255)
T 1v6t_A          154 EEMGLKVAH-EVFADRAYNPDGTLVPRGRPGAVIEDKEEI---AERVISMVKDGGIRAINGEWVDLKVDTICVHGDNPKA  229 (255)
T ss_dssp             HHHTCCEEE-EECTTBCBCTTSCBCC-----CBCCCHHHH---HHHHHHHHHHSEEECTTSCEEECCCSEEECCCSSHHH
T ss_pred             HHCCCCEEE-EEEECCCCCCCCCEEECCCCCCCCCCHHHH---HHHHHHHHHCCCEEECCCCEEECCCCEEEECCCCHHH
T ss_conf             973997259-997504488999886366865557999999---9999999867988914898875168989989998789


Q ss_pred             HHHHHHHHHHHHHCCCEEEEHHHHHH
Q ss_conf             99999997568876918996777430
Q gi|254780558|r  365 IEVISQWLQQEHVRDVSVVPLSCLAK  390 (396)
Q Consensus       365 i~~L~~w~~~l~~~gi~lVpvS~l~~  390 (396)
                      ++.++..-..|++.||++.|+++++|
T Consensus       230 v~~a~~ir~~L~~~gi~I~pl~~~~~  255 (255)
T 1v6t_A          230 VEITSYIRKVLEEEGVKIVPMKEFIR  255 (255)
T ss_dssp             HHHHHHHHHHHHHTTCEECCGGGTC-
T ss_pred             HHHHHHHHHHHHHCCCEEECHHHHCC
T ss_conf             99999999999988999973788509


No 12 
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Probab=96.79  E-value=0.0052  Score=37.32  Aligned_cols=188  Identities=10%  Similarity=0.073  Sum_probs=113.9

Q ss_pred             HHHHHHHHCCCCCEEEEEC-CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             8899998379350898708-987689999999985992999817665689877878554467899899999999999855
Q gi|254780558|r  186 GTQRAINLLPANITLAFAS-NGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRG  264 (396)
Q Consensus       186 ~~~~ai~~LP~~vT~A~~P-~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~  264 (396)
                      .-.+.+.++-.+.||.+.- ......+.++...+.||||..|=      |..      .....++.++.++.+..+++.+
T Consensus        85 Ril~ll~~~~i~aTffv~g~~ae~~P~~v~~i~~~GhEi~~HG------~~h------~~~~~l~~~~e~~~i~~~~~~l  152 (308)
T 3cl6_A           85 RILKLFKAFDIPLTIFAVAMAAQRHPDVIRAMVAAGHEICSHG------YRW------IDYQYMDEAQEREHMLEAIRIL  152 (308)
T ss_dssp             HHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECC------SSS------SCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCEEEEEHHHHHHCHHHHHHHHHCCCHHHHCH------HHC------CCCCCCCHHHHHHHHHHHHHHH
T ss_conf             9999999759982898369999889799999997545576570------211------0544589999999999999999


Q ss_pred             CCCEEEE--ECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHH-----HHHHHHHCCCEEE--EEEEEC---CCC
Q ss_conf             8935980--012300004989999999998506928997497632267-----8989870994698--458862---899
Q gi|254780558|r  265 TGYFGVM--NYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLT-----RVLAPKLNLPYMV--ADLYLD---DQV  332 (396)
Q Consensus       265 p~~vGvn--NhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva-----~~~A~~~gvp~~~--~dvfLD---~~~  332 (396)
                      ..++|.-  -+....++++ ..    ...|++.|+.|.-|...-..--     ..--...-+|+..  .|.++-   +..
T Consensus       153 ~~~tG~~p~G~~~p~~~~~-~t----~~LL~e~Gf~Y~ss~~~dD~Py~~~~~~~~~~~l~iP~~~~~~D~~~~~~~~~~  227 (308)
T 3cl6_A          153 TELTGERPLGWYTGRTGPN-TR----RLVMEEGGFLYDCDTYDDDLPYWEPNNPTGKPHLVIPYTLDTNDMRFTQVQGFN  227 (308)
T ss_dssp             HHHHSSCCSEECCSSCCTT-HH----HHHHHHCCCSEECCCCCCSSCEECSCCTTCSCCEECCCCSSSBGGGGGSSSCCS
T ss_pred             HHHCCCCCCEECCCCCCCC-CH----HHHHHHCCCEEECCCCCCCCCCEEECCCCCCCEEEEEEEHHCCHHHHHHCCCCC
T ss_conf             9880999765708999997-38----889872397897777777776246437888715985112101604687506888


Q ss_pred             CH----HHHHHHHHHHHHHHHHCCEEEEEE-ECC----HHHHHHHHHHHHHHHHC-CCEEEEHHHHHH
Q ss_conf             99----999999999999998719489998-088----78899999997568876-918996777430
Q gi|254780558|r  333 DR----DKIREKLKGLEEIARTTGQAIGVA-VAF----DESIEVISQWLQQEHVR-DVSVVPLSCLAK  390 (396)
Q Consensus       333 ~~----~~I~~qL~~l~~~Ar~~G~AI~ig-h~~----p~Ti~~L~~w~~~l~~~-gi~lVpvS~l~~  390 (396)
                      +.    +.+..+|+.+-+-..++|....|+ ||+    |.-+..|.+.+..+.++ ||-++..+++.+
T Consensus       228 ~~~~~~~~~~d~fd~~~~e~~~~~~~~~i~lHP~i~G~p~Ri~~Le~~l~~i~~~~dVW~at~~eIA~  295 (308)
T 3cl6_A          228 KGDDFFEYLKDAFDVLYAEGAEAPKMLSIGLHCRLIGRPARLAALQRFIEYAKSHEQVWFTRRVDIAR  295 (308)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEEHHHHTSHHHHHHHHHHHHHHHTSSSEEECCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf             67999999999999999843778888999648753598899999999999997589989827899999


No 13 
>2i5i_A UPF0249 protein EF_3048; putative cellobiose-phosphate cleavage protein, structural G joint center for structural genomics, JCSG; HET: MSE; 1.70A {Enterococcus faecalis V583} SCOP: c.6.2.8
Probab=96.32  E-value=0.055  Score=30.86  Aligned_cols=213  Identities=10%  Similarity=0.010  Sum_probs=129.1

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHC---CCCCEEEEECCCCCHHHHHHHHHH--CCCCEEEECCCCC-CCCCCCCCC-----
Q ss_conf             58999737787716889999837---935089870898768999999998--5992999817665-689877878-----
Q gi|254780558|r  172 RIAIVVSGLGISQTGTQRAINLL---PANITLAFASNGNSLDRWMKEAKK--KGQEAILQIPMQA-FDESYNEDD-----  240 (396)
Q Consensus       172 riAIVIddlG~~~~~~~~ai~~L---P~~vT~A~~P~~~~~~~~~~~Ar~--~G~EvllhlPMEp-~~~~~~~pG-----  240 (396)
                      ||-|--||+|++..... +|.++   ..-=+.+++..++...+.++.++.  .+-.|=||+=+-- ...|-..+-     
T Consensus         6 ~lii~ADDfG~~~~vn~-gi~~~~~~G~lts~s~Mvn~p~~~~a~~~~k~~~~~~~vGlHl~Lt~~~~~p~~~~~~~~~l   84 (263)
T 2i5i_A            6 KLIINADDFGYTPAVTQ-GIIEAHKRGVVTSTTALPTSPYFLEAMESARISAPTLAIGVHLTLTLNQAKPILPREMVPSL   84 (263)
T ss_dssp             EEEEEEEEETSSHHHHH-HHHHHHHSSSCCEEEECTTSTTHHHHHHHHHHHCTTCEEEEEECSCCTTCCCSSCTTTSGGG
T ss_pred             EEEEECCCCCCCHHHHH-HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHCCCC
T ss_conf             89997776789877899-99999987986687863588069999999986589876456677416778888983546765


Q ss_pred             ---------CCCCCCCCCHHHHHHHHHHHHHHCCCC----EEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             ---------554467899899999999999855893----5980012300004989999999998506928997497632
Q gi|254780558|r  241 ---------SYTLKVTQTVQQLLNRLRYSLRRGTGY----FGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPR  307 (396)
Q Consensus       241 ---------p~~L~~~~~~~~~~~~l~~~l~~~p~~----vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~  307 (396)
                               ...+.-..+.+++++.++.-++++-..    .-+..|++.-. -.+.....+.+..++.|+-+........
T Consensus        85 ~~~~g~f~~~~~~~~~~~~~ev~~Ei~AQi~~f~~~g~~p~hiDgH~hvh~-~~p~i~~~~~~l~~~y~lp~r~~~~~~~  163 (263)
T 2i5i_A           85 VDEAGYFWHQSIFEEKVNLEEVYNEWDAQIISFMKSGRRPDHIDSHHNVHG-KNKKLLGVALALARKYQLPLRNASRSIE  163 (263)
T ss_dssp             BCTTSCBCCHHHHTTTCCHHHHHHHHHHHHHHHGGGSSCCSCEEEGGGGGG-SSHHHHHHHHHHHHHHTCCBCCCCCSGG
T ss_pred             CCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC-CCHHHHHHHHHHHHHHCCCEEECCCCCC
T ss_conf             187764313356541389999999999999999992899873525452002-6878999999999994998886410113


Q ss_pred             CHH-HHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCH--HHHH--------------HH--
Q ss_conf             267-8989870994698458862899999999999999999987194899980887--8899--------------99--
Q gi|254780558|r  308 NLT-RVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVAFD--ESIE--------------VI--  368 (396)
Q Consensus       308 Sva-~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p--~Ti~--------------~L--  368 (396)
                      ... ....+....+...-..+.+...+.+.+.+.|+.+.  ....|....++||--  ..+.              +|  
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~eim~HPg~~d~~l~~~~~~~~~R~~E~~~L~s  241 (263)
T 2i5i_A          164 TKDYLELYQDVRTPDEMLYQFYDKAISTETILQLLDMVV--CSEGEVFEINCHPAFIDTILQNQSGYCMPRIREVEILTS  241 (263)
T ss_dssp             GGGGGGGTTTSCCCSEEECCCSGGGCSHHHHHHHHHHHH--HSSCSEEEEEECCCCBCHHHHHHCSSCTHHHHHHHHHTC
T ss_pred             CCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCCCCCHHHHHCCCCCCHHHHHHHHHCC
T ss_conf             244688960888765415232244579899999999876--358881699954798976665069864206999999749


Q ss_pred             HHHHHHHHHCCCEEEEHHHH
Q ss_conf             99975688769189967774
Q gi|254780558|r  369 SQWLQQEHVRDVSVVPLSCL  388 (396)
Q Consensus       369 ~~w~~~l~~~gi~lVpvS~l  388 (396)
                      .++..-+++.||+|+.-++|
T Consensus       242 ~~~~~~l~~~~I~Li~y~dL  261 (263)
T 2i5i_A          242 QEVKEAIEERGILLANYESL  261 (263)
T ss_dssp             HHHHHHHHHTTCEEECGGGG
T ss_pred             HHHHHHHHHCCCEEECHHHC
T ss_conf             99999999879899537850


No 14 
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} SCOP: c.6.2.5
Probab=95.27  E-value=0.15  Score=28.13  Aligned_cols=191  Identities=16%  Similarity=0.146  Sum_probs=125.1

Q ss_pred             CCCCCCC----HHHHHHHHHCCCCCEEEEECCCC------CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3778771----68899998379350898708987------6899999999859929998176656898778785544678
Q gi|254780558|r  178 SGLGISQ----TGTQRAINLLPANITLAFASNGN------SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVT  247 (396)
Q Consensus       178 ddlG~~~----~~~~~ai~~LP~~vT~A~~P~~~------~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~  247 (396)
                      -|||.+.    .+.+++|+  |+ ||-|=+.-+-      .-.+.++.|++.|-.|=-|-     +||+.+ |=+--...
T Consensus         7 ~DlGE~~g~~~~g~D~~lm--p~-I~saNIACG~HAGD~~~m~~tv~lA~~~~V~IGAHP-----sypD~~-gFGRr~~~   77 (250)
T 2dfa_A            7 ADAGESYGAFAYGHDREIF--PL-VSSANLACGFHGGSPGRILEAVRLAKAHGVAVGAHP-----GFPDLV-GFGRREMA   77 (250)
T ss_dssp             EEECCCBTTBCCSCHHHHT--TT-CSEEEEECSSSSCCHHHHHHHHHHHHHTTCEEEEEC-----CCSCTT-TTTCSCCC
T ss_pred             ECCCCCCCCCCCCCHHHHH--HH-HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEECCC-----CCCCCC-CCCCCCCC
T ss_conf             0079987887888839998--67-535887517256779999999999998598781479-----977645-79998788


Q ss_pred             CCHHHHHHHHHHHHHHCCCCE---EE-EECC---CC---CCCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHHHHH
Q ss_conf             998999999999998558935---98-0012---30---0004989999999998506--92899749763226789898
Q gi|254780558|r  248 QTVQQLLNRLRYSLRRGTGYF---GV-MNYR---GA---MLLSNKESAEVIFKEFAKR--GLLFFDDGSSPRNLTRVLAP  315 (396)
Q Consensus       248 ~~~~~~~~~l~~~l~~~p~~v---Gv-nNhm---Gs---~~t~~~~~m~~vl~~l~~r--gL~flDs~Ts~~Sva~~~A~  315 (396)
                      ++++|+.+.+..-+..+-+..   |+ .+|.   |+   ....|+...+.+++.++..  +|.++   +-+.|...+.|+
T Consensus        78 ~s~~el~~~i~~Qi~al~~~a~~~g~~l~hVKpHGALYn~~~~d~~la~ai~~ai~~~~~~l~l~---~~~~s~~~~~A~  154 (250)
T 2dfa_A           78 LSPEEVYADVLYQIGALSAFLKAEGLPLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLV---VLPGTVYEEEAR  154 (250)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEE---ECTTSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE---EECCCHHHHHHH
T ss_conf             99999999999999999999998199752205027899999865999999999999859986799---837847899999


Q ss_pred             HHCCCEEEEEEEECCC-----------------CCHHHHHHHHHHHHHHHHHC------CE-------EEEEEECCHHHH
Q ss_conf             7099469845886289-----------------99999999999999999871------94-------899980887889
Q gi|254780558|r  316 KLNLPYMVADLYLDDQ-----------------VDRDKIREKLKGLEEIARTT------GQ-------AIGVAVAFDESI  365 (396)
Q Consensus       316 ~~gvp~~~~dvfLD~~-----------------~~~~~I~~qL~~l~~~Ar~~------G~-------AI~igh~~p~Ti  365 (396)
                      +.|+++.. ..|.|-.                 .|++.+.+|   ..++++++      |.       -|-+-.-.|+.+
T Consensus       155 ~~Gl~~~~-E~FADR~Y~~dG~Lv~R~~~gAvi~d~~~~~~q---v~~~~~~g~V~t~~G~~i~i~adTiCvHgDtp~Av  230 (250)
T 2dfa_A          155 KAGLRVVL-EAFPERAYLRSGQLAPRSMPGSWITDPEEAARR---ALRMVLEGKVEALDGGEVAVRADTLCIHGDNPNAP  230 (250)
T ss_dssp             HTTCCEEE-EECTTBCBCTTSSBCCTTSTTCBCCCHHHHHHH---HHHHHHTSEEEBTTSSEEECCCSEEEEC---CCHH
T ss_pred             HCCCCEEE-EEEECCCCCCCCCEEEECCCCCCCCCHHHHHHH---HHHHHHCCCEEECCCCEEECCCCEEEECCCCHHHH
T ss_conf             86996689-997326688999888632652201687999999---99999779889168988743578899899987899


Q ss_pred             HHHHHHHHHHHHCCCEEEE
Q ss_conf             9999997568876918996
Q gi|254780558|r  366 EVISQWLQQEHVRDVSVVP  384 (396)
Q Consensus       366 ~~L~~w~~~l~~~gi~lVp  384 (396)
                      +.++..-..|++.||++.|
T Consensus       231 ~~a~~ir~~L~~~gi~I~~  249 (250)
T 2dfa_A          231 EVARAVREALEQAGVEVRA  249 (250)
T ss_dssp             HHHHHHHHHHHTTTCEECC
T ss_pred             HHHHHHHHHHHHCCCEEEC
T ss_conf             9999999999988797816


No 15 
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=95.06  E-value=0.063  Score=30.48  Aligned_cols=194  Identities=13%  Similarity=0.084  Sum_probs=128.4

Q ss_pred             CCCCCCCHHHHHHHHHCCCCCEEEEECCCC------CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             377877168899998379350898708987------68999999998599299981766568987787855446789989
Q gi|254780558|r  178 SGLGISQTGTQRAINLLPANITLAFASNGN------SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQ  251 (396)
Q Consensus       178 ddlG~~~~~~~~ai~~LP~~vT~A~~P~~~------~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~  251 (396)
                      -|||.+. +..++|+.+   ||-|=+.-+-      .-.+.++.|.+.|-.|=.|-     +||+.+ |=+=-...++++
T Consensus         7 ~DlGE~~-g~D~~lmp~---I~saNIACG~HaGD~~~m~~tv~lA~~~~V~IGAHP-----sypD~~-gFGRr~~~~s~~   76 (252)
T 1xw8_A            7 ADLGEGC-ASDAELLTL---VSSANIACGFHAGDAQIMQACVREAIKNGVAIGAHP-----SFPDRE-NFGRSAMQLPPE   76 (252)
T ss_dssp             EEESSSC-SCHHHHHHH---CSEEEEECSSSSCCHHHHHHHHHHHHHHTCEEEEEC-----CCC--------CCCCCCHH
T ss_pred             CCCCCCC-CCHHHHHHH---HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEECCC-----CCCCCC-CCCCCCCCCCHH
T ss_conf             3468886-887999867---646888607356779999999999998498780589-----999767-899887889999


Q ss_pred             HHHHHHHHHHHHCCCCE--------EEEECCCC---CCCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHHHHHHHC
Q ss_conf             99999999998558935--------98001230---0004989999999998506--92899749763226789898709
Q gi|254780558|r  252 QLLNRLRYSLRRGTGYF--------GVMNYRGA---MLLSNKESAEVIFKEFAKR--GLLFFDDGSSPRNLTRVLAPKLN  318 (396)
Q Consensus       252 ~~~~~l~~~l~~~p~~v--------GvnNhmGs---~~t~~~~~m~~vl~~l~~r--gL~flDs~Ts~~Sva~~~A~~~g  318 (396)
                      |+.+.+.+-++.+-...        .|--| |.   ....|+...+.+++.++..  +|.++-   .+.|...+.|++.|
T Consensus        77 el~~~i~~Qi~al~~~a~~~g~~l~hVKpH-GALYn~a~~d~~lA~~i~~ai~~~~~~l~l~~---~~~s~~~~~A~~~G  152 (252)
T 1xw8_A           77 TVYAQTLYQIGALATIARAQGGVMRHVKPH-GMLYNQAAKEAQLADAIARAVYACDPALILVG---LAGSELIRAGKQYG  152 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCEEEECCC-HHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEE---ETTSHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCEECCC-HHHHHHHHCCHHHHHHHHHHHHHHCCCHHHCC---CCCCHHHHHHHHCC
T ss_conf             999999999999999999849963102503-69998751379999999999998594154424---88749999998759


Q ss_pred             CCEEEEEEEECCCCCH----------HH----HHHHHHHHHHHHHH------CCEEEE-----EE--ECCHHHHHHHHHH
Q ss_conf             9469845886289999----------99----99999999999987------194899-----98--0887889999999
Q gi|254780558|r  319 LPYMVADLYLDDQVDR----------DK----IREKLKGLEEIART------TGQAIG-----VA--VAFDESIEVISQW  371 (396)
Q Consensus       319 vp~~~~dvfLD~~~~~----------~~----I~~qL~~l~~~Ar~------~G~AI~-----ig--h~~p~Ti~~L~~w  371 (396)
                      +++.. .+|.|-.-+.          .+    ....++++.++++.      .|.-|-     ||  .-.|..++.++..
T Consensus       153 l~~~~-E~FADR~Y~~dG~LvpR~~~gAvi~d~~~~~~qv~~~~~~g~V~ti~G~~i~i~adTICvHgDtp~Av~~a~~i  231 (252)
T 1xw8_A          153 LTTRE-EVFADRGYQADGSLVPRSQSGALIENEEQALAQTLEMVQHGRVKSITGEWATVAAQTVCLHGDGEHALAFARRL  231 (252)
T ss_dssp             CCEEE-EECTTSCBCTTSSBCCTTTCC-----CTTHHHHHHHHHHHSEEECTTSCEEECCCCEEECCCCC-CCHHHHHHH
T ss_pred             CCEEE-EEEECCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCEECCCCCEEEECCCCHHHHHHHHHH
T ss_conf             97799-99862657899998862477875489999999999999779878678998017888799899987899999999


Q ss_pred             HHHHHHCCCEEEEHH
Q ss_conf             756887691899677
Q gi|254780558|r  372 LQQEHVRDVSVVPLS  386 (396)
Q Consensus       372 ~~~l~~~gi~lVpvS  386 (396)
                      -..|++.||++.|+-
T Consensus       232 r~~L~~~gi~I~~~~  246 (252)
T 1xw8_A          232 RSAFAEKGIVVAALE  246 (252)
T ss_dssp             HHHC----CCBCCCC
T ss_pred             HHHHHHCCCEEEECC
T ss_conf             999998899897152


No 16 
>3hft_A WBMS, polysaccharide deacetylase involved in O- antigen biosynthesis; NP_886680.1, structural genomics; HET: MSE; 1.90A {Bordetella bronchiseptica}
Probab=88.99  E-value=1.1  Score=22.69  Aligned_cols=109  Identities=14%  Similarity=-0.014  Sum_probs=74.5

Q ss_pred             EEEEEECCCCCCCHHHHH---HHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             589997377877168899---99837935089870898768999999998599299981766568987787855446789
Q gi|254780558|r  172 RIAIVVSGLGISQTGTQR---AINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQ  248 (396)
Q Consensus       172 riAIVIddlG~~~~~~~~---ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~  248 (396)
                      +|++-+|+.+-+...+.+   -+.+-..+.||=+.-..   ....+...+.||||=+|=      |      -+.+..++
T Consensus        38 ~v~ltfD~d~~~~~~~~~~l~~l~~~~i~aTfFvtg~s---~~l~~~~~~~ghEIG~H~------~------~H~~~~~~  102 (257)
T 3hft_A           38 RIFLTFDIDWAADFVLQDTIDLIEGAGVCATWFATHST---PLLENIRRNPLFELGVHP------N------FNPLLAGA  102 (257)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHHTCCEEEEECSCC---THHHHHHHCTTEEEEECC------C------CHHHHHSC
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC---HHHHHHHHCCCCEEEECC------C------CCCCCCCC
T ss_conf             38999767988655599999999975996599956897---899999974995897558------7------56673110


Q ss_pred             CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             989999999999985589359800123000049899999999985069289974
Q gi|254780558|r  249 TVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDD  302 (396)
Q Consensus       249 ~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs  302 (396)
                      +.++.++.|+...+-++..+|.-.|-++   .+.    ..++.|+++|+.|--|
T Consensus       103 ~~~~~~~~l~~~~~i~~~~~g~RaP~~~---~s~----~~l~~L~e~G~~ydsS  149 (257)
T 3hft_A          103 HAEGVQEILDRTLELAPGCVSVRSHSLV---QAT----SILNMFGERRLRYDCN  149 (257)
T ss_dssp             CSCCHHHHHHHHHTTSTTCCEECCGGGC---CCH----HHHHHHHHTTCCEECC
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEECCCCC---CCH----HHHHHHHHCCCEEEEE
T ss_conf             4899999999999760886276789720---398----9999999869807751


No 17 
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=86.66  E-value=1.5  Score=21.80  Aligned_cols=149  Identities=11%  Similarity=0.126  Sum_probs=70.8

Q ss_pred             CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC---CCCCCH
Q ss_conf             87689999999985992999817665689877878554467899899999999999855893598001230---000498
Q gi|254780558|r  206 GNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGA---MLLSNK  282 (396)
Q Consensus       206 ~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs---~~t~~~  282 (396)
                      ..+..++++.+++.|++. +.++....+             ..++++ .+.|...+.+..=.+-...+...   -...|+
T Consensus        35 ~~d~~~~i~~~ae~Gfd~-iEl~~~~~~-------------~~~~~~-~~~lk~~l~~~gL~i~~~~~~~~~~~~~s~d~   99 (309)
T 2hk0_A           35 SAKFGPYIEKVAKLGFDI-IEVAAHHIN-------------EYSDAE-LATIRKSAKDNGIILTAGIGPSKTKNLSSEDA   99 (309)
T ss_dssp             TSCSHHHHHHHHHTTCSE-EEEEHHHHT-------------TSCHHH-HHHHHHHHHHTTCEEEEECCCCSSSCSSCSCH
T ss_pred             CCCHHHHHHHHHHHCCCE-EEECCCCCC-------------CCCHHH-HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCH
T ss_conf             989999999999849998-996767666-------------489999-99999999984998999626876789899899


Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEE------EEECCCCC----HHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999998506928997497632267898987099469845------88628999----9999999999999998719
Q gi|254780558|r  283 ESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVAD------LYLDDQVD----RDKIREKLKGLEEIARTTG  352 (396)
Q Consensus       283 ~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~d------vfLD~~~~----~~~I~~qL~~l~~~Ar~~G  352 (396)
                      ...+..++.+++               +-.+|..+|.+.....      ..-+...+    .+.+...|.++..+|+++|
T Consensus       100 ~~r~~~i~~l~~---------------~ie~A~~lGa~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~G  164 (309)
T 2hk0_A          100 AVRAAGKAFFER---------------TLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLG  164 (309)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH---------------HHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999---------------99999982998898416788677788876899999999999999999998617


Q ss_pred             EEEEEE------ECCHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             489998------08878899999997568876918996
Q gi|254780558|r  353 QAIGVA------VAFDESIEVISQWLQQEHVRDVSVVP  384 (396)
Q Consensus       353 ~AI~ig------h~~p~Ti~~L~~w~~~l~~~gi~lVp  384 (396)
                      .-|+|=      +.+..|.+.+.+++..+...++.++.
T Consensus       165 v~l~iE~~~~~~~~~~~t~~~~~~ll~~v~~~~vgl~~  202 (309)
T 2hk0_A          165 INLCIEVLNRFENHVLNTAAEGVAFVKDVGKNNVKVML  202 (309)
T ss_dssp             CEEEEECCCTTTCSSCCSHHHHHHHHHHHTCTTEEEEE
T ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf             64478844764553569999974210000367765544


No 18 
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=84.89  E-value=1.8  Score=21.26  Aligned_cols=127  Identities=13%  Similarity=0.099  Sum_probs=74.8

Q ss_pred             HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf             99998599299981766568987787855446789989999999999985589359800123000049899999999985
Q gi|254780558|r  214 KEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFA  293 (396)
Q Consensus       214 ~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~  293 (396)
                      ..+.+.|+-|++                  +...|+.+++..|+....+.++...--+   |-..-.+.......+..+.
T Consensus       226 ~~~~~~g~~Vl~------------------~SlEm~~~~~~~R~~a~~~~v~~~~i~~---~~~~~~~~~~~~~~~~~~~  284 (454)
T 2r6a_A          226 NVATKTNENVAI------------------FSLEMSAQQLVMRMLCAEGNINAQNLRT---GKLTPEDWGKLTMAMGSLS  284 (454)
T ss_dssp             HHHHHSSCCEEE------------------EESSSCHHHHHHHHHHHHHTCCHHHHHT---SCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCEEE------------------EECCCCHHHHHHHHHHHHHCCCHHHHCC---CCCCHHHHHHHHHHHHHHH
T ss_conf             576625980799------------------8078999999999999873356776346---9998789999999999876


Q ss_pred             CCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCC-----------CCHHHHHHHHHHHHHHHHHCCEEEEEE-ECC
Q ss_conf             06928997497632267898987099469845886289-----------999999999999999998719489998-088
Q gi|254780558|r  294 KRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQ-----------VDRDKIREKLKGLEEIARTTGQAIGVA-VAF  361 (396)
Q Consensus       294 ~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~-----------~~~~~I~~qL~~l~~~Ar~~G~AI~ig-h~~  361 (396)
                      ...+++-|.....-+.....++.....+...-+|+|.-           .....|..-..+|-.+|++.+..|.+. |..
T Consensus       285 ~~~l~i~~~~~~~~~~i~~~~r~~~~~~g~~~vviDyl~~~~~~~~~~~~~~~~i~~i~~~Lk~lA~~~~v~vi~~sqln  364 (454)
T 2r6a_A          285 NAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLS  364 (454)
T ss_dssp             SSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCC
T ss_pred             HCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_conf             36606733667646899999999998549968999744420467888866999999999999999999798599981568


No 19 
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=78.46  E-value=3.1  Score=19.79  Aligned_cols=125  Identities=16%  Similarity=0.097  Sum_probs=74.6

Q ss_pred             HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf             99998599299981766568987787855446789989999999999985589359800123000049899999999985
Q gi|254780558|r  214 KEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFA  293 (396)
Q Consensus       214 ~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~  293 (396)
                      ..|.++|+-|+.                  +...|+.+++..|+......++...--++   .....+...+....+.++
T Consensus       223 ~~a~~~g~~v~~------------------~slEm~~~~~~~r~~a~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~l~  281 (444)
T 2q6t_A          223 NAALKEGVGVGI------------------YSLEMPAAQLTLRMMCSEARIDMNRVRLG---QLTDRDFSRLVDVASRLS  281 (444)
T ss_dssp             HHHHTTCCCEEE------------------EESSSCHHHHHHHHHHHHTTCCTTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEE------------------ECCCCCHHHHHHHHHHHHCCCCCHHHHCC---CCCHHHHHHHHHHHHHHH
T ss_conf             999977994999------------------85889999999999987528882122237---762778999999999986


Q ss_pred             CCCCEEEECCCC-C---CCHHHHHHHHHCCCEEEEEEEECCCC-------------CHHHHHHHHHHHHHHHHHCCEEEE
Q ss_conf             069289974976-3---22678989870994698458862899-------------999999999999999987194899
Q gi|254780558|r  294 KRGLLFFDDGSS-P---RNLTRVLAPKLNLPYMVADLYLDDQV-------------DRDKIREKLKGLEEIARTTGQAIG  356 (396)
Q Consensus       294 ~rgL~flDs~Ts-~---~Sva~~~A~~~gvp~~~~dvfLD~~~-------------~~~~I~~qL~~l~~~Ar~~G~AI~  356 (396)
                      +..+++.|.... .   .+.+.......++    .-+|+|.-+             ...+|..-..+|-.+|++.+..|.
T Consensus       282 ~~~l~i~d~~~~t~~~i~~~~~~~~~~~~~----~~vviDyl~~~~~~~~~~~~~~~~~~i~~i~~~Lk~lA~~~~i~vi  357 (444)
T 2q6t_A          282 EAPIYIDDTPDLTLMEVRARARRLVSQNQV----GLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPII  357 (444)
T ss_dssp             TSCEEEECCTTCBHHHHHHHHHHHHHHSCC----CEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHCCCC----CEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf             398799689999999999999986651467----8599962454214556776420999999999999999997398799


Q ss_pred             -EEECCHH
Q ss_conf             -9808878
Q gi|254780558|r  357 -VAVAFDE  363 (396)
Q Consensus       357 -igh~~p~  363 (396)
                       +.|....
T Consensus       358 ~~sqlnr~  365 (444)
T 2q6t_A          358 ALSQLSRA  365 (444)
T ss_dssp             EEEECCGG
T ss_pred             EEECCCCC
T ss_conf             98514821


No 20 
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=77.46  E-value=3.3  Score=19.61  Aligned_cols=100  Identities=15%  Similarity=0.106  Sum_probs=64.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCC--------CEEEEECCCCC-CCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH
Q ss_conf             46789989999999999985589--------35980012300-0049899999999985069289974976322678989
Q gi|254780558|r  244 LKVTQTVQQLLNRLRYSLRRGTG--------YFGVMNYRGAM-LLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLA  314 (396)
Q Consensus       244 L~~~~~~~~~~~~l~~~l~~~p~--------~vGvnNhmGs~-~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A  314 (396)
                      +-..++.+++..|+.........        ..-+-+..++. .......++.+........+.++|+.+...+      
T Consensus        74 i~~E~~~~~i~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~------  147 (279)
T 1nlf_A           74 LPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHI------  147 (279)
T ss_dssp             EESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCC------
T ss_pred             EECCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHCC------
T ss_conf             83567899999999998522585666532012111255664101227999999998567853998160555247------


Q ss_pred             HHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEE-EEECCHH
Q ss_conf             870994698458862899999999999999999987194899-9808878
Q gi|254780558|r  315 PKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIG-VAVAFDE  363 (396)
Q Consensus       315 ~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~-igh~~p~  363 (396)
                                    .++.+...+..-+..+..+|++.|.+|. |.|....
T Consensus       148 --------------~~en~~~~~~~~~~~l~~~a~~~g~~vi~v~H~~K~  183 (279)
T 1nlf_A          148 --------------EEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKG  183 (279)
T ss_dssp             --------------SCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred             --------------CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             --------------887743788999999999998759979998367864


No 21 
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa}
Probab=70.10  E-value=5  Score=18.48  Aligned_cols=145  Identities=15%  Similarity=0.135  Sum_probs=99.0

Q ss_pred             EECCCCCCC----HHHHHHHHHCCCCCEEEEECCCCC------HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             973778771----688999983793508987089876------8999999998599299981766568987787855446
Q gi|254780558|r  176 VVSGLGISQ----TGTQRAINLLPANITLAFASNGNS------LDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLK  245 (396)
Q Consensus       176 VIddlG~~~----~~~~~ai~~LP~~vT~A~~P~~~~------~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~  245 (396)
                      +=-|||.+.    .+..++|+.+   ||-|=+.-+-+      -++.++.|++.|-.|=-|-     +||+.+ |=+--.
T Consensus        11 lN~DlGE~fg~~~~g~D~~lmp~---I~saNIACG~HAGD~~~m~~tv~lA~~~~V~IGAHP-----sypD~~-gFGRr~   81 (252)
T 2x5e_A           11 LNCDMGESFGAWRMGDDVHSMPL---VDQANLACGFHAGDPLTMRRAVELAVRHGVSIGAHP-----AYPDLS-GFGRRS   81 (252)
T ss_dssp             EEEEECCCBTTBCCSCHHHHGGG---CSEEEEECSSSSCCHHHHHHHHHHHHHTTCEEEEEC-----CCSCTT-TTTCSC
T ss_pred             EEEECCCCCCCCCCCCHHHHHHH---HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEECCC-----CCCCCC-CCCCCC
T ss_conf             87007999888677885999867---525888506256799999999999998599783689-----987657-899998


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCC--------EEEEECCCCC---CCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHH
Q ss_conf             7899899999999999855893--------5980012300---004989999999998506--92899749763226789
Q gi|254780558|r  246 VTQTVQQLLNRLRYSLRRGTGY--------FGVMNYRGAM---LLSNKESAEVIFKEFAKR--GLLFFDDGSSPRNLTRV  312 (396)
Q Consensus       246 ~~~~~~~~~~~l~~~l~~~p~~--------vGvnNhmGs~---~t~~~~~m~~vl~~l~~r--gL~flDs~Ts~~Sva~~  312 (396)
                      ..++++|+.+.+..-++.+...        ..|--| |+.   ...|+...+.+++.++..  +|.++--.+++.|...+
T Consensus        82 ~~~s~~el~~~v~~Qi~al~~~a~~~g~~l~hVKpH-GALYn~~~~D~~lA~ai~~ai~~~~~~l~l~~la~~~~~~~~~  160 (252)
T 2x5e_A           82 LACSAEEVHAMVLYQIGALDAFCRSLGTQVAYVKPH-GALYNDLVGDDELLRAVLDACAAYRKGLPLMVLALADNGRELE  160 (252)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHTTCCCCEECCC-HHHHHHHTTCHHHHHHHHHHHHHHCTTCCEEEECCSCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHH
T ss_conf             899999999999999999999999849910365313-9999999861999999999999858564278862476057888


Q ss_pred             HHHHHCCCEEEEEEEECCC
Q ss_conf             8987099469845886289
Q gi|254780558|r  313 LAPKLNLPYMVADLYLDDQ  331 (396)
Q Consensus       313 ~A~~~gvp~~~~dvfLD~~  331 (396)
                      +|++.|+++.. .+|.|-.
T Consensus       161 ~A~~~Gl~~~~-E~FADR~  178 (252)
T 2x5e_A          161 LADEADVPLLF-EAFADRA  178 (252)
T ss_dssp             HHHHHTCCEEE-EEESSBC
T ss_pred             HHHHCCCCEEE-EEEECCC
T ss_conf             99977997368-9975365


No 22 
>2e67_A Hypothetical protein TTHB029; NPPSFA, national project on protein structural and functional analyses, structural genomics; 2.90A {Thermus thermophilus HB8}
Probab=67.13  E-value=5.8  Score=18.09  Aligned_cols=172  Identities=15%  Similarity=0.080  Sum_probs=96.0

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCC--CC---CCCCCCCCCC--
Q ss_conf             5899973778771688999983793508987089876899999999859929998176656--89---8778785544--
Q gi|254780558|r  172 RIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAF--DE---SYNEDDSYTL--  244 (396)
Q Consensus       172 riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~--~~---~~~~pGp~~L--  244 (396)
                      +|-|--||+|++... .+||.+. .--+.+++..+|..++      ..+-.|=||+=+-.-  .|   |-.+ .| .|  
T Consensus        14 ~Lii~ADDfG~s~~v-n~ai~~G-~vts~s~M~~~p~~~~------~~~l~vGlHl~Lt~~~p~~~~~p~~~-~p-sL~~   83 (264)
T 2e67_A           14 VLILHHDDLGLTHAQ-NGAYQAL-GLPTGSVMVPGAWASG------VKGEDLGVHLVLTSEWPAPRMRPLTE-GE-SLRD   83 (264)
T ss_dssp             EEEEEEEEETSCHHH-HHHHHHH-CCCEEEECTTSTTGGG------CCCTEEEEEECCCCCSSSSCCCCSSC-CG-GGCB
T ss_pred             EEEEECCCCCCCHHH-HHHHHHC-CEEEEEEEECCHHHHH------CCCCCCCEEEEECCCCCCCCCCCCCC-CC-CCCC
T ss_conf             699965778899889-9999939-7004553027888996------52768743578458888778787223-66-5558


Q ss_pred             ------------CCCCCHH----HHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC-
Q ss_conf             ------------6789989----99999999998558935980012300004989999999998506928997497632-
Q gi|254780558|r  245 ------------KVTQTVQ----QLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPR-  307 (396)
Q Consensus       245 ------------~~~~~~~----~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~-  307 (396)
                                  ....+.+    |++..++..++-+ +-.-+..||+.-+  .+...+.+++..+++|+.+....+... 
T Consensus        84 ~~G~F~~~~~~~~~~~~~~eV~~El~AQi~~f~~~i-~PsHiDsH~Hvh~--~P~v~~~~~~la~~y~lp~~~~~~~~~~  160 (264)
T 2e67_A           84 EAGYFPESLEALWRKARAEEVERELKAQIQAAAKLF-SPTHLDAHQGAVL--RPDLAEVYLRLAEAYRLVPLVPESLEGL  160 (264)
T ss_dssp             TTTBCCSSHHHHHHHCCHHHHHHHHHHHHHHHHTTS-CCCEEEEGGGGGG--SHHHHHHHHHHHHHTTCEECCBSCCTTS
T ss_pred             CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC-CCCEECCCCCHHC--CHHHHHHHHHHHHHHCCCEEECCCHHHC
T ss_conf             888644669998733899999999999999999608-9973627531223--8689999999999839983403401320


Q ss_pred             -------CHHHHHHHHHCCCEEEEEEEECCC-CCHHHHHHHHHHHHHHHHHCCEEEEEEECC
Q ss_conf             -------267898987099469845886289-999999999999999998719489998088
Q gi|254780558|r  308 -------NLTRVLAPKLNLPYMVADLYLDDQ-VDRDKIREKLKGLEEIARTTGQAIGVAVAF  361 (396)
Q Consensus       308 -------Sva~~~A~~~gvp~~~~dvfLD~~-~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~  361 (396)
                             ............+.   ..|.|.. .+.......+..+..  .+.|....++||-
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~--l~~G~~eim~HPg  217 (264)
T 2e67_A          161 GVPPPFLPELERLLYETPFPQ---VRFLDPYGLPPEERLGFYLDLAH--LPPGLYYLVHHSA  217 (264)
T ss_dssp             CCCGGGHHHHHHHHHHCCSCC---BEEECCTTSCGGGHHHHHHHGGG--CCSEEEEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHCCCCC---CEECCCCCCCCHHHHHHHHHHHC--CCCCCEEEEECCC
T ss_conf             566467899998754213454---30034235671149999999961--8998679997999


No 23 
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3- epimerase, D-tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=63.42  E-value=6.8  Score=17.65  Aligned_cols=81  Identities=11%  Similarity=0.076  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH----HCCCC-EE--EEECCCCCCCCC
Q ss_conf             899999999859929998176656898778785544678998999999999998----55893-59--800123000049
Q gi|254780558|r  209 LDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLR----RGTGY-FG--VMNYRGAMLLSN  281 (396)
Q Consensus       209 ~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~----~~p~~-vG--vnNhmGs~~t~~  281 (396)
                      ..+.++.|+.-|-+++...+...             ..+.+.++..+++...+.    ....+ +.  ..|++-..|..+
T Consensus       115 ~~~~i~~a~~lG~~~i~~~~~~~-------------~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~le~~~~~~~~~~~t  181 (290)
T 2zvr_A          115 VVKHTEVAGMFGALVIIGLVRGR-------------REGRSYEETEELFIESMKRLLELTEHAKFVIEPLNRYETDFINT  181 (290)
T ss_dssp             HHHHHHHHHHHTCEEEESGGGCC-------------CTTSCHHHHHHHHHHHHHHHHHHCSSCCEEECCCCTTTCSSCCS
T ss_pred             HHHHHHHHHHCCCCEEEECCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEC
T ss_conf             99999999973993799568988-------------88899999999999999999999775221485203535133303


Q ss_pred             HHHHHHHHHHHHCCCCEE-EEC
Q ss_conf             899999999985069289-974
Q gi|254780558|r  282 KESAEVIFKEFAKRGLLF-FDD  302 (396)
Q Consensus       282 ~~~m~~vl~~l~~rgL~f-lDs  302 (396)
                      ...+..+++.+...++.+ +|.
T Consensus       182 ~~~~~~li~~v~~~~~g~~~D~  203 (290)
T 2zvr_A          182 IDDALRILRKINSNRVGILADT  203 (290)
T ss_dssp             HHHHHHHHHHHCCTTEEEEEEH
T ss_pred             HHHHHHHHHHHCCCCCCCCCCC
T ss_conf             8889999998098446666671


No 24 
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=61.63  E-value=7.3  Score=17.45  Aligned_cols=164  Identities=15%  Similarity=0.110  Sum_probs=69.7

Q ss_pred             HCCCCEEEECCCCCCCCCC---------CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf             8599299981766568987---------7878554467899899999999999855893598001230000498999999
Q gi|254780558|r  218 KKGQEAILQIPMQAFDESY---------NEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVI  288 (396)
Q Consensus       218 ~~G~EvllhlPMEp~~~~~---------~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~v  288 (396)
                      ..|..|-++.+++-.++=.         ...+ ..-...++.+++.+.+.++...-  +..+.=.-|.-...+...+..+
T Consensus        46 ~~G~~v~~~~~I~~Sn~C~~~C~fC~~~~~~~-~~~~~~ls~eeI~~~~~~~~~~G--~~~i~l~~g~~~~~~~~~~~~~  122 (348)
T 3iix_A           46 YVGDEVHIRAIIEFSNVCRKNCLYCGLRRDNK-NLKRYRMTPEEIVERARLAVQFG--AKTIVLQSGEDPYXMPDVISDI  122 (348)
T ss_dssp             HHCSEEEEEEEEEEECCCSCCCTTCTTCTTCC-SSCCCBCCHHHHHHHHHHHHHTT--CSEEEEEESCCGGGTTHHHHHH
T ss_pred             HCCCEEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCHHHHHHH
T ss_conf             78998899998886588899891499883699-97661589999999999999819--9289982588876648999999


Q ss_pred             HHHHHCCCCEEEECC-CCCCCHHHHHHHHHCCCEEEEEEEECCCC--CHHHHH-----HHHHHHHHHHHHCCEEEE----
Q ss_conf             999850692899749-76322678989870994698458862899--999999-----999999999987194899----
Q gi|254780558|r  289 FKEFAKRGLLFFDDG-SSPRNLTRVLAPKLNLPYMVADLYLDDQV--DRDKIR-----EKLKGLEEIARTTGQAIG----  356 (396)
Q Consensus       289 l~~l~~rgL~flDs~-Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~--~~~~I~-----~qL~~l~~~Ar~~G~AI~----  356 (396)
                      ++.+++.++..--+. ....... ..-++.|+-...  +.++...  ....|.     .+..+..+.+++.|.-+.    
T Consensus       123 i~~i~~~~~~i~~~~g~~~~e~l-~~L~~aG~~~~~--~~~et~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i  199 (348)
T 3iix_A          123 VKEIKKMGVAVTLSLGEWPREYY-EKWKEAGADRYL--LRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSM  199 (348)
T ss_dssp             HHHHHTTSCEEEEECCCCCHHHH-HHHHHHTCCEEE--CCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBE
T ss_pred             HHHCCCCCEEEEECCCCCHHHHH-HHHHHHCCCEEE--ECHHHCCHHHEEECCCCCCCCHHHHHHHHHHHCCCEEEEEEE
T ss_conf             87403332123202454308999-999982896798--563443402122011477731246776677624972788899


Q ss_pred             EEECCHHHHHHHHHHHHHHHHCCCEEEEHHHH
Q ss_conf             98088788999999975688769189967774
Q gi|254780558|r  357 VAVAFDESIEVISQWLQQEHVRDVSVVPLSCL  388 (396)
Q Consensus       357 igh~~p~Ti~~L~~w~~~l~~~gi~lVpvS~l  388 (396)
                      +|++. +|.+-+.+-+..++.-++..++++.+
T Consensus       200 ~Glpg-Et~ed~~~~l~~lr~l~~~~~~~~~f  230 (348)
T 3iix_A          200 VGLPG-QTIDDLVDDLLFLKEHDFDMVGIGPF  230 (348)
T ss_dssp             ESCTT-CCHHHHHHHHHHHHHHTCSEECCEEC
T ss_pred             EECCC-CCHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             94599-99999999999997279988989866


No 25 
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=59.65  E-value=7.9  Score=17.23  Aligned_cols=82  Identities=12%  Similarity=0.183  Sum_probs=58.0

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             79350898708987689999999985992999817665689877878554467899899999999999855893598001
Q gi|254780558|r  194 LPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNY  273 (396)
Q Consensus       194 LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNh  273 (396)
                      |.+.|...|.|.+...+...+...++.++|.+.++    .              .+..++.+.|..+..|--...-+.++
T Consensus         1 ~~~~i~v~fsP~~~~~~~i~~~I~~A~~~I~i~~y----~--------------~~~~~i~~aL~~a~~rGV~Vrvl~d~   62 (155)
T 1byr_A            1 VEPSVQVGYSPEGSARVLVLSAIDSAKTSIRMMAY----S--------------FTAPDIMKALVAAKKRGVDVKIVIDE   62 (155)
T ss_dssp             -CCEEEEEEETTTHHHHHHHHHHHHCSSEEEEEES----S--------------BCCHHHHHHHHHHHHTTCEEEEEEES
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHCCEEEEEEE----E--------------CCCHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf             99955899899974999999999960729999998----4--------------27889999999999859939999972


Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             230000498999999999850692
Q gi|254780558|r  274 RGAMLLSNKESAEVIFKEFAKRGL  297 (396)
Q Consensus       274 mGs~~t~~~~~m~~vl~~l~~rgL  297 (396)
                      .|+........    ++.|.+.|.
T Consensus        63 ~~~~~~~~~~~----~~~l~~~gi   82 (155)
T 1byr_A           63 RGNTGRASIAA----MNYIANSGI   82 (155)
T ss_dssp             TTCCSHHHHHH----HHHHHHTTC
T ss_pred             CCCCCCCCHHH----HHHHHHCCC
T ss_conf             37532033999----999984588


No 26 
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=59.27  E-value=8  Score=17.19  Aligned_cols=69  Identities=10%  Similarity=0.018  Sum_probs=35.0

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             58999737787716889999837935089870898768999999998599299981766568987787855446789989
Q gi|254780558|r  172 RIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQ  251 (396)
Q Consensus       172 riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~  251 (396)
                      ++|+||+==.|...........|+.++        +++....+.-+..|++|-+-+        +         ...+.+
T Consensus         4 ~~AllIGin~~~~~~Y~~~~~~L~g~v--------nDa~~~~~~L~~~gf~v~~l~--------~---------~~aTr~   58 (285)
T 3bij_A            4 GIALALGLNAVDPKHYGGWAGKLNACE--------ADAEDMAAIAAERGFAVTTLM--------T---------KAATRA   58 (285)
T ss_dssp             EEEEEEECSCCCTTTTTTCCCCCSSHH--------HHHHHHHHHHHHTTCEEEEEE--------G---------GGCCHH
T ss_pred             CEEEEEEECCCCCCCCCCCCCCCCCHH--------HHHHHHHHHHHHCCCCEEEEE--------C---------CCCCHH
T ss_conf             679999506887434799741268828--------999999999998699759962--------6---------766799


Q ss_pred             HHHHHHHHHHHHCC
Q ss_conf             99999999998558
Q gi|254780558|r  252 QLLNRLRYSLRRGT  265 (396)
Q Consensus       252 ~~~~~l~~~l~~~p  265 (396)
                      .|++.|.|.+.++.
T Consensus        59 ~i~~al~~l~~~~~   72 (285)
T 3bij_A           59 KVIDAIGKAAKALG   72 (285)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             99999999998588


No 27 
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=55.09  E-value=9.4  Score=16.75  Aligned_cols=96  Identities=16%  Similarity=0.197  Sum_probs=64.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-----------------CCCCCHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             4467899899999999999855893598001230-----------------00049899999999985069289974976
Q gi|254780558|r  243 TLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGA-----------------MLLSNKESAEVIFKEFAKRGLLFFDDGSS  305 (396)
Q Consensus       243 ~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs-----------------~~t~~~~~m~~vl~~l~~rgL~flDs~Ts  305 (396)
                      .+....+..++.+.|..+.. ...-+|+.+|..-                 ..-.++.-.+..+..+++.|.-.+=-   
T Consensus        85 VVeI~vs~~Dil~aL~~a~~-~~~kIavVgf~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~v~~l~~~G~~vVVG---  160 (225)
T 2pju_A           85 VILIKPSGYDVLQFLAKAGK-LTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVG---  160 (225)
T ss_dssp             EEEECCCHHHHHHHHHHTTC-TTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEE---
T ss_pred             EEEEECCHHHHHHHHHHHHH-HCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEC---
T ss_conf             89970787689999999997-58988999376403699999999699449999668899999999999869979998---


Q ss_pred             CCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             322678989870994698458862899999999999999999987
Q gi|254780558|r  306 PRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIART  350 (396)
Q Consensus       306 ~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~  350 (396)
                       .+++..+|+++|+++    +||-   +.+.|++.|+++.++|+-
T Consensus       161 -~~~~~~~A~~~Gl~~----vli~---SgeSI~~Ai~~Al~~ar~  197 (225)
T 2pju_A          161 -AGLITDLAEEAGMTG----IFIY---SAATVRQAFSDALDMTRM  197 (225)
T ss_dssp             -SHHHHHHHHHTTSEE----EESS---CHHHHHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHCCCCE----EEEC---CHHHHHHHHHHHHHHHHH
T ss_conf             -858999999849978----9975---889999999999999999


No 28 
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=54.64  E-value=9.5  Score=16.71  Aligned_cols=69  Identities=16%  Similarity=0.068  Sum_probs=40.7

Q ss_pred             CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC---CCCHHHHHHHH----HHHHHH------CCCCEEEEEC
Q ss_conf             7689999999985992999817665689877878554467---89989999999----999985------5893598001
Q gi|254780558|r  207 NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKV---TQTVQQLLNRL----RYSLRR------GTGYFGVMNY  273 (396)
Q Consensus       207 ~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~---~~~~~~~~~~l----~~~l~~------~p~~vGvnNh  273 (396)
                      .+..+.+++|+++|..|||-+=--+.   ..+|+.+....   +.+.++....+    ...+.+      .+.++-|+|-
T Consensus        60 ~~~~~~~~~a~~~Gm~v~ldlH~sd~---Wadp~~q~~p~~w~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~vqigne  136 (334)
T 1fob_A           60 DYNLELAKRVKAAGMSLYLDLHLSDT---WADPSDQTTPSGWSTTDLGTLKWQLYNYTLEVCNTFAENDIDIEIISIGNE  136 (334)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCSSS---CCBTTBCBCCTTSCSSCHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEESSS
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCC---CCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf             99999999999889989996477887---668666788620100340358999999999999999857998657982676


Q ss_pred             CCCCC
Q ss_conf             23000
Q gi|254780558|r  274 RGAML  278 (396)
Q Consensus       274 mGs~~  278 (396)
                      .-..+
T Consensus       137 ~n~g~  141 (334)
T 1fob_A          137 IRAGL  141 (334)
T ss_dssp             GGGCS
T ss_pred             CCCCC
T ss_conf             46664


No 29 
>2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=45.52  E-value=13  Score=15.81  Aligned_cols=99  Identities=9%  Similarity=0.140  Sum_probs=65.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-----------------CCCCCHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             4467899899999999999855893598001230-----------------00049899999999985069289974976
Q gi|254780558|r  243 TLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGA-----------------MLLSNKESAEVIFKEFAKRGLLFFDDGSS  305 (396)
Q Consensus       243 ~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs-----------------~~t~~~~~m~~vl~~l~~rgL~flDs~Ts  305 (396)
                      .+....+..++.+.|..+... ..-+|+..|-..                 ..-.++.-.+..+..+++.|.-.+=-   
T Consensus        73 VVeI~vs~~Dil~al~~a~~~-~~kiavvgf~~~~~~~~~i~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG---  148 (196)
T 2q5c_A           73 SISIKVTRFDTMRAVYNAKRF-GNELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKTENIKIVVS---  148 (196)
T ss_dssp             EEEECCCHHHHHHHHHHHGGG-CSEEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHTTCCEEEE---
T ss_pred             EEEECCCHHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEC---
T ss_conf             799807887999999999975-8978999678501589999998599559999668899999999999869989999---


Q ss_pred             CCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             32267898987099469845886289999999999999999998719
Q gi|254780558|r  306 PRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTG  352 (396)
Q Consensus       306 ~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G  352 (396)
                       .+++..+|+++|+|+.    ||  ..+.+.|++.|+++.++++-+-
T Consensus       149 -~~~~~~~A~~~Gl~~i----li--~Sg~eSI~~Al~eA~~l~~~~~  188 (196)
T 2q5c_A          149 -GKTVTDEAIKQGLYGE----TI--NSGEESLRRAIEEALNLIEVRN  188 (196)
T ss_dssp             -CHHHHHHHHHTTCEEE----EC--CCCHHHHHHHHHHHHHHHHHHC
T ss_pred             -CHHHHHHHHHCCCCEE----EE--ECCHHHHHHHHHHHHHHHHHHH
T ss_conf             -8799999998599789----99--6549999999999999999885


No 30 
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=45.39  E-value=13  Score=15.80  Aligned_cols=22  Identities=14%  Similarity=0.211  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHCCEEEEEE
Q ss_conf             9999999999998719489998
Q gi|254780558|r  337 IREKLKGLEEIARTTGQAIGVA  358 (396)
Q Consensus       337 I~~qL~~l~~~Ar~~G~AI~ig  358 (396)
                      ....|.++..+|+++|..|++-
T Consensus       131 ~~~~l~~~~~~A~~~gi~l~iE  152 (290)
T 2qul_A          131 AIESVRRVIKVAEDYGIIYALE  152 (290)
T ss_dssp             HHHHHHTTHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHCCEEEEE
T ss_conf             9999999999998515214656


No 31 
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=45.00  E-value=9.7  Score=16.65  Aligned_cols=168  Identities=11%  Similarity=0.146  Sum_probs=88.4

Q ss_pred             EEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCC--EEEECCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             997377877168899998379350898708987689999999985992--999817665689877878554467899899
Q gi|254780558|r  175 IVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQE--AILQIPMQAFDESYNEDDSYTLKVTQTVQQ  252 (396)
Q Consensus       175 IVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~E--vllhlPMEp~~~~~~~pGp~~L~~~~~~~~  252 (396)
                      |+=-|.|.+... .....+-...| .++..........-+++.+.|..  +-..+    .+|... +++           
T Consensus        68 VLDiGCG~G~~a-~~~A~~~g~~v-~git~s~~q~~~a~~~~~~~~~~~~~~~~~----~d~~~~-~~~-----------  129 (287)
T 1kpg_A           68 LLDVGCGWGATM-MRAVEKYDVNV-VGLTLSKNQANHVQQLVANSENLRSKRVLL----AGWEQF-DEP-----------  129 (287)
T ss_dssp             EEEETCTTSHHH-HHHHHHHCCEE-EEEESCHHHHHHHHHHHHTCCCCSCEEEEE----SCGGGC-CCC-----------
T ss_pred             EEEECCCHHHHH-HHHHHHCCCCE-EEEECCHHHHHHHHHHHHHHCCCCHHHHHH----HHHHHC-CCC-----------
T ss_conf             999688525999-99999679846-999689999999999987614540157887----436641-377-----------


Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHH-------HHHHHHHCCCEEEEE
Q ss_conf             9999999998558935980012300004989999999998506928997497632267-------898987099469845
Q gi|254780558|r  253 LLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLT-------RVLAPKLNLPYMVAD  325 (396)
Q Consensus       253 ~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva-------~~~A~~~gvp~~~~d  325 (396)
                              +++ =-.+++..|||.+--  ...++.+-+.|+..|.++|.+-+......       ........+++..++
T Consensus       130 --------fD~-i~si~~~eh~~~~~~--~~~~~~~~r~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~k~  198 (287)
T 1kpg_A          130 --------VDR-IVSIGAFEHFGHERY--DAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTE  198 (287)
T ss_dssp             --------CSE-EEEESCGGGTCTTTH--HHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred             --------CCC-EEEEHHHHHCCHHHH--HHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             --------640-555322775074779--999999997469997299999974683444321576433442154566322


Q ss_pred             EEECCC-CCHHHHHHHHHHHHHHHHHCCEEEE-EEECCHHHHHHHHHHHHHHHHC
Q ss_conf             886289-9999999999999999987194899-9808878899999997568876
Q gi|254780558|r  326 LYLDDQ-VDRDKIREKLKGLEEIARTTGQAIG-VAVAFDESIEVISQWLQQEHVR  378 (396)
Q Consensus       326 vfLD~~-~~~~~I~~qL~~l~~~Ar~~G~AI~-igh~~p~Ti~~L~~w~~~l~~~  378 (396)
                      +|-... ++       +......+.+.|.-|- +-+-.......|..|...++++
T Consensus       199 ifpgg~lps-------l~~~~~~~~~aGf~v~~~~~~~~hY~~Tl~~W~~~f~~~  246 (287)
T 1kpg_A          199 IFPGGRLPS-------IPMVQECASANGFTVTRVQSLQPHYAKTLDLWSAALQAN  246 (287)
T ss_dssp             TSTTCCCCC-------HHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCC-------HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf             168887897-------699999998628688653148676999999999999996


No 32 
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1
Probab=44.45  E-value=14  Score=15.71  Aligned_cols=94  Identities=12%  Similarity=0.108  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEE
Q ss_conf             89999999999985--5893598001230000498999999999850692899749763226789898709946984588
Q gi|254780558|r  250 VQQLLNRLRYSLRR--GTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLY  327 (396)
Q Consensus       250 ~~~~~~~l~~~l~~--~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvf  327 (396)
                      .++++..|...+..  -+...-...|-  -+-.+...|+.++..+.+.|+-+.+..-..        ..-|-.....++.
T Consensus        18 ~~en~eVl~~L~e~G~d~~~~~~IEH~--~~f~d~~~lek~a~~~~~~Gyev~~~ee~e--------~edg~~~~~~~~~   87 (132)
T 1nxi_A           18 KEETRDIIQALLEDGSDPDALYEIEHH--LFAEDFDKLEKAAVEAFKMGFEVLEAEETE--------DEDGNKLLCFDAT   87 (132)
T ss_dssp             HHHHHHHHHHHHHHTCCTTSCEEEEEE--EEESCHHHHHHHHHHHHHHTCCCBCCCCBC--------CSSCSSBEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEEE--EEECCHHHHHHHHHHHHHCCCEECCCCCCC--------CCCCCEEEEEEEE
T ss_conf             998999999999669985667566799--996998999999999998897870455344--------5799768999999


Q ss_pred             ECCCCCHHHHHHHHHHHHHHHHHCCE
Q ss_conf             62899999999999999999987194
Q gi|254780558|r  328 LDDQVDRDKIREKLKGLEEIARTTGQ  353 (396)
Q Consensus       328 LD~~~~~~~I~~qL~~l~~~Ar~~G~  353 (396)
                      .....+.+.|..+-.++..+|.+.|-
T Consensus        88 ~e~~ld~e~I~~~~~~L~~LA~~~~g  113 (132)
T 1nxi_A           88 MQSALDAKLIDEQVEKLVNLAEKFDI  113 (132)
T ss_dssp             EEECSCHHHHHHHHHHHHHHHHHHTC
T ss_pred             EECCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             96569999999999999999999691


No 33 
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A*
Probab=43.88  E-value=14  Score=15.65  Aligned_cols=162  Identities=11%  Similarity=0.061  Sum_probs=86.9

Q ss_pred             ECCCCCHHHHHHHHHHCCC----CEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             0898768999999998599----299981766568987787855446789989999999999985589359800123000
Q gi|254780558|r  203 ASNGNSLDRWMKEAKKKGQ----EAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAML  278 (396)
Q Consensus       203 ~P~~~~~~~~~~~Ar~~G~----EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~  278 (396)
                      .||.....+..+.-++-..    ++++             ||.+.+..+ ..+-+.+..+|+-.+..+-+-|.=  +|..
T Consensus       204 ~p~~~~~~~~l~~l~~L~~~~~i~~I~-------------PgHGpv~~~-~~~~i~~y~~~~~~~~~~kv~Ivy--~S~~  267 (404)
T 2ohh_A          204 TPLSKLVLKKFDEVKELGLLERIQMIA-------------PSHGQIWTD-PMKIIEAYTGWATGMVDERVTVIY--DTMH  267 (404)
T ss_dssp             GGGHHHHHHHHHHHHHTTCGGGCSEEE-------------CSSSCBBSS-HHHHHHHHHHHHTTCCCSEEEEEE--CCSS
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCEEE-------------CCCCHHHCC-HHHHHHHHHHHHHCCCCCCEEEEE--ECCC
T ss_conf             676899999999998664667863996-------------277027569-899999999861055576262898--5586


Q ss_pred             CCCHHHHHHHHHHHHCCCCEE--EECC-CCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH--HHCCE
Q ss_conf             049899999999985069289--9749-763226789898709946984588628999999999999999999--87194
Q gi|254780558|r  279 LSNKESAEVIFKEFAKRGLLF--FDDG-SSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIA--RTTGQ  353 (396)
Q Consensus       279 t~~~~~m~~vl~~l~~rgL~f--lDs~-Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~A--r~~G~  353 (396)
                      -..+...+.+.+.++..|.-.  ++-. +........+...-++-+..-..+ ++..  ..+...|+.+..+-  +-+|.
T Consensus       268 GnT~~~A~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~ii~Gspt~~-~~~~--~~~~~fl~~l~~~~~~~~~gK  344 (404)
T 2ohh_A          268 GSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIY-DEPY--PSVGDLLMYLRGLKFNRTLTR  344 (404)
T ss_dssp             SHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCEET-TEEC--THHHHHHHHHHHHCGGGTCCE
T ss_pred             CHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECCCCC-CCCC--HHHHHHHHHHHHHHHCCCCCC
T ss_conf             5799999999998875798189999258897888999985795599636517-8468--899999999865764565798


Q ss_pred             -EEEEEECCHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             -8999808878899999997568876918996
Q gi|254780558|r  354 -AIGVAVAFDESIEVISQWLQQEHVRDVSVVP  384 (396)
Q Consensus       354 -AI~igh~~p~Ti~~L~~w~~~l~~~gi~lVp  384 (396)
                       +..+|+ |.-.=.++..|...|+..|+.+|.
T Consensus       345 ~~~~Fgs-~g~~g~a~~~~~~~l~~~G~~vv~  375 (404)
T 2ohh_A          345 KALVFGS-MGGNGGATGTMKELLAEAGFDVAC  375 (404)
T ss_dssp             EEEEEEE-ESSSCCHHHHHHHHHHHTTEEEEE
T ss_pred             EEEEEEC-CCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf             6999990-488769999999999977998945


No 34 
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=43.36  E-value=4.2  Score=18.96  Aligned_cols=52  Identities=15%  Similarity=0.268  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHCCEEEE--EEECCHH-----HHHHHHHHHHHHHHCCCEEEEHH
Q ss_conf             9999999999999987194899--9808878-----89999999756887691899677
Q gi|254780558|r  335 DKIREKLKGLEEIARTTGQAIG--VAVAFDE-----SIEVISQWLQQEHVRDVSVVPLS  386 (396)
Q Consensus       335 ~~I~~qL~~l~~~Ar~~G~AI~--igh~~p~-----Ti~~L~~w~~~l~~~gi~lVpvS  386 (396)
                      ..+..++++|..+.|++|+.--  |-...|.     +-+.|...+..|...||.+|--+
T Consensus         5 ~~~~~~ik~LI~~GK~~GylTy~eIn~~LP~~~~e~~~e~ie~i~~~L~~~gI~Vve~~   63 (72)
T 2k6x_A            5 PQIERRIKKLISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGINIVENE   63 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCCCCBCCS
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf             89999999999987526847599999876545441699999999999998799671389


No 35 
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp}
Probab=41.93  E-value=15  Score=15.46  Aligned_cols=132  Identities=11%  Similarity=0.016  Sum_probs=70.5

Q ss_pred             HHHHCCCCCEEEEE---CCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             99837935089870---898768999999998599299981766568987787855446789989999999999985589
Q gi|254780558|r  190 AINLLPANITLAFA---SNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTG  266 (396)
Q Consensus       190 ai~~LP~~vT~A~~---P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~  266 (396)
                      ++......+-+...   +......+..+.++..|..++...                    .+.++    +.++.+.-..
T Consensus        96 ~~~~~gad~i~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~v--------------------~t~~~----a~~a~~~Gad  151 (232)
T 3igs_A           96 ALAQAGAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADC--------------------SSVDD----GLACQRLGAD  151 (232)
T ss_dssp             HHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEEC--------------------CSHHH----HHHHHHTTCS
T ss_pred             HHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEC--------------------CCHHH----HHHHHHCCCC
T ss_conf             88873999999972348997899999999975498699986--------------------99999----9999968998


Q ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             3598001230000498999999999850692-899749763226789898709946984588628999999999999999
Q gi|254780558|r  267 YFGVMNYRGAMLLSNKESAEVIFKEFAKRGL-LFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLE  345 (396)
Q Consensus       267 ~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL-~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~  345 (396)
                      ++|+||+-...+..+......+++.+...+. .+.+++=....-+ ..+.+.|.-....---|   ...+.|.++|.++.
T Consensus       152 ~Igv~~~~~~~~~~~~~~~~~l~~~~~~~~ipvia~GGI~t~~d~-~~~~~~GAd~V~vGsAi---~~~~~i~~~~~~ai  227 (232)
T 3igs_A          152 IIGTTMSGYTTPDTPEEPDLPLVKALHDAGCRVIAEGRYNSPALA-AEAIRYGAWAVTVGSAI---TRLEHICGWYNDAL  227 (232)
T ss_dssp             EEECTTTTSSSSSCCSSCCHHHHHHHHHTTCCEEEESCCCSHHHH-HHHHHTTCSEEEECHHH---HCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHH-HHHHHCCCCEEEECHHH---CCHHHHHHHHHHHH
T ss_conf             899735778778767036788999973378239985898999999-99998699999989477---59099999999999


Q ss_pred             HHHH
Q ss_conf             9998
Q gi|254780558|r  346 EIAR  349 (396)
Q Consensus       346 ~~Ar  349 (396)
                      +.|+
T Consensus       228 ~~~~  231 (232)
T 3igs_A          228 KKAA  231 (232)
T ss_dssp             HHHH
T ss_pred             HHHC
T ss_conf             9741


No 36 
>2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus HB8}
Probab=41.31  E-value=15  Score=15.40  Aligned_cols=57  Identities=16%  Similarity=0.073  Sum_probs=25.9

Q ss_pred             CCCCHHH-HHHHHHHHHHHHHHCC-EEEEEEECCH-HHHHHHHHHHHHHHHCCC-----EEEEHHHHH
Q ss_conf             8999999-9999999999998719-4899980887-889999999756887691-----899677743
Q gi|254780558|r  330 DQVDRDK-IREKLKGLEEIARTTG-QAIGVAVAFD-ESIEVISQWLQQEHVRDV-----SVVPLSCLA  389 (396)
Q Consensus       330 ~~~~~~~-I~~qL~~l~~~Ar~~G-~AI~igh~~p-~Ti~~L~~w~~~l~~~gi-----~lVpvS~l~  389 (396)
                      -.++... +.+-++.+.+...... .-+.|.|.-. +....   +..++...++     .+.++|..+
T Consensus       200 k~Rg~kka~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~i~p~i  264 (280)
T 2dt8_A          200 RARGEKKAREEILKAFRAWAEGRKRIRAYFLYSGDEDAVAA---LRQEVLASGLPVEEALVNELGAVI  264 (280)
T ss_dssp             EESSHHHHHHHHHHHHHHHHTTCSCEEEEEEESSCTHHHHH---HHHHHHHSSSCEEEEEEEECCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH---HHHHHHHHCCCCCEEEEEEECCEE
T ss_conf             14669999999999999873388870899997899899999---999998733998749999978699


No 37 
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=40.36  E-value=16  Score=15.31  Aligned_cols=11  Identities=18%  Similarity=0.003  Sum_probs=3.6

Q ss_pred             HHHHCCCCEEE
Q ss_conf             99855893598
Q gi|254780558|r  260 SLRRGTGYFGV  270 (396)
Q Consensus       260 ~l~~~p~~vGv  270 (396)
                      .++..+.+|=+
T Consensus       187 l~~~G~~~Vli  197 (288)
T 1jxh_A          187 LLAMGCEAVLM  197 (288)
T ss_dssp             HHHTTCSEEEE
T ss_pred             HHHCCCCEEEE
T ss_conf             97667977997


No 38 
>1q1g_A Uridine phosphorylase putative; transition state complex, transferase; HET: MTI; 2.02A {Plasmodium falciparum 3D7} SCOP: c.56.2.1 PDB: 1nw4_A* 3fow_A*
Probab=38.88  E-value=14  Score=15.67  Aligned_cols=77  Identities=9%  Similarity=0.013  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEE
Q ss_conf             89999999999985--5893598001230000498999999999850692899749763226789898709946984588
Q gi|254780558|r  250 VQQLLNRLRYSLRR--GTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLY  327 (396)
Q Consensus       250 ~~~~~~~l~~~l~~--~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvf  327 (396)
                      ..++.+.|..+...  ++..+|+. +.+..|-.+.. +...++.+++.|-.-+|=-++.   ...+|...|++++..-..
T Consensus       133 d~~l~~~l~~aa~~~~~~~~~G~v-~T~D~FY~~~~-~~~~~~~~~~~g~~avEMEsAa---l~~va~~~gv~a~ail~V  207 (276)
T 1q1g_A          133 DFDVYDTLNKCAQELNVPVFNGIS-VSSDMYYPNKI-IPSRLEDYSKANAAVVEMELAT---LMVIGTLRKVKTGGILIV  207 (276)
T ss_dssp             CHHHHHHHHHHHHHTTCCCEEEEE-EEESCSSCCSS-SCCSHHHHHHTTCCEEESSHHH---HHHHHHHHTCEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEE-EECCCCCCCCC-CHHHHHHHHHCCCCEEECCHHH---HHHHHHHCCCCEEEEEEE
T ss_conf             999999999999981998426545-34775637854-2489999997499767134999---999999859809999999


Q ss_pred             ECCC
Q ss_conf             6289
Q gi|254780558|r  328 LDDQ  331 (396)
Q Consensus       328 LD~~  331 (396)
                      -|+.
T Consensus       208 sd~~  211 (276)
T 1q1g_A          208 DGCP  211 (276)
T ss_dssp             CBCG
T ss_pred             ECCC
T ss_conf             6876


No 39 
>1qgo_A CBIK protein, anaerobic cobalamine biosynthetic cobalt chelatase; vitamin B12, metal ION chelation, cobalt precorrin; 2.40A {Salmonella typhimurium LT2} SCOP: c.92.1.2
Probab=37.04  E-value=18  Score=14.98  Aligned_cols=186  Identities=14%  Similarity=0.241  Sum_probs=105.3

Q ss_pred             EEEEEECCCCCCCHHHHH-HHH--------HCC-CCCEEEEE-------------CCCCCHHHHHHHHHHCCCCEEEECC
Q ss_conf             589997377877168899-998--------379-35089870-------------8987689999999985992999817
Q gi|254780558|r  172 RIAIVVSGLGISQTGTQR-AIN--------LLP-ANITLAFA-------------SNGNSLDRWMKEAKKKGQEAILQIP  228 (396)
Q Consensus       172 riAIVIddlG~~~~~~~~-ai~--------~LP-~~vT~A~~-------------P~~~~~~~~~~~Ar~~G~EvllhlP  228 (396)
                      +-||++-.+|-+...+.+ +|.        .+| .+|-+||+             =..|+..+..+...++|++-++=+|
T Consensus         2 k~aillv~~GS~~~~~~~~~i~~~~~~v~~~~pd~~V~~af~s~~i~~~l~~~~~~~~p~~~~al~~l~~~G~~~i~V~P   81 (264)
T 1qgo_A            2 KKALLVVSFGTSYHDTCEKNIVACERDLAASCPDRDLFRAFTSGMIIRKLRQRDGIDIDTPLQALQKLAAQGYQDVAIQS   81 (264)
T ss_dssp             CEEEEEEECCCSCHHHHHHHHHHHHHHHHHTCTTSEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf             85799997899965779999999999999888899189775004888887651477799999999999977997799987


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCC--------CCEEE
Q ss_conf             6656898778785544678998999999999998558935980012300004989999999998506--------92899
Q gi|254780558|r  229 MQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKR--------GLLFF  300 (396)
Q Consensus       229 MEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~r--------gL~fl  300 (396)
                      +=             |..+..-+++.+.+...-.+++...     .|.-+..+..-...+++.+...        .+.|+
T Consensus        82 l~-------------l~~G~~~~di~~~~~~~~~~~~~i~-----~~~pll~~~~~~~~~~~~l~~~~~~~~~~~~lllv  143 (264)
T 1qgo_A           82 LH-------------IINGDEYEKIVREVQLLRPLFTRLT-----LGVPLLSSHNDYVQLMQALRQQMPSLRQTEKVVFM  143 (264)
T ss_dssp             CC-------------SBCSHHHHHHHHHHHHHGGGSSEEE-----ECCCSBSSHHHHHHHHHHHHTTCCCCCTTEEEEEE
T ss_pred             EE-------------CCCCCHHHHHHHHHHHHHHHCCCEE-----EECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf             40-------------3463259999999998775379469-----83577999899999999999844556888579999


Q ss_pred             ECCCCCCCHH-----HHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCE-EEEEEECC---H--HHHHHH-
Q ss_conf             7497632267-----8989870994698458862899999999999999999987194-89998088---7--889999-
Q gi|254780558|r  301 DDGSSPRNLT-----RVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQ-AIGVAVAF---D--ESIEVI-  368 (396)
Q Consensus       301 Ds~Ts~~Sva-----~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~-AI~igh~~---p--~Ti~~L-  368 (396)
                      .-+++..+..     ....++.+.+...  -|++..++.+...++|.+       +|. -|.+ .|+   +  .+..-+ 
T Consensus       144 gHGs~~~~~~~~~~~~~~l~~~~~~v~v--~~~~~~P~~~~~l~~l~~-------~g~~~v~v-~P~fl~~G~h~~~Di~  213 (264)
T 1qgo_A          144 GHGASHHAFAAYACLDHMMTAQRFPARV--GAVESYPEVDILIDSLRD-------EGVTGVHL-MPLMLVAGDHAINDMA  213 (264)
T ss_dssp             ECCCSHHHHHHHHHHHHHHHHHTCSEEE--EETTSSSCHHHHHHHHHH-------HTCCEEEE-EECSSSCCHHHHTTTT
T ss_pred             ECCCCCHHHHHHHHHHHHHHHCCCCEEE--EEEEECCCHHHHHHHHHH-------CCCCEEEE-EECEECCCCCHHHHHH
T ss_conf             5799734258999999999963898599--998506988999999874-------57987999-9780025733232010


Q ss_pred             ----HHHHHHHHHCCCEEEEH
Q ss_conf             ----99975688769189967
Q gi|254780558|r  369 ----SQWLQQEHVRDVSVVPL  385 (396)
Q Consensus       369 ----~~w~~~l~~~gi~lVpv  385 (396)
                          ..|-..+.+.|++..++
T Consensus       214 ~~~~~s~~~~l~~~g~~~~~~  234 (264)
T 1qgo_A          214 SDDGDSWKMRFNAAGIPATPW  234 (264)
T ss_dssp             SSSTTSHHHHHHHTTCCEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEEE
T ss_conf             011479999888759846441


No 40 
>2b94_A Purine nucleoside phosphorylase; SGPP, structural genomics, PSI, protein structure initiative, PNP, UDP, ontario/toronto SGC; 1.85A {Plasmodium knowlesi} PDB: 3emv_A 1sq6_A 2bsx_A* 3enz_A*
Probab=33.88  E-value=20  Score=14.67  Aligned_cols=78  Identities=6%  Similarity=0.025  Sum_probs=47.9

Q ss_pred             CHHHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEE
Q ss_conf             989999999999985--589359800123000049899999999985069289974976322678989870994698458
Q gi|254780558|r  249 TVQQLLNRLRYSLRR--GTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADL  326 (396)
Q Consensus       249 ~~~~~~~~l~~~l~~--~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dv  326 (396)
                      .+.++.+.+..++..  ++..+|++ ..+..|-.+. .....++.+++.|..-+|=-++.   ...+|...|++++..-.
T Consensus       153 ad~~l~~~l~~~a~~~~~~~~~G~i-~S~D~FY~~~-~~~~~~~~~~~~gv~~vEMEsAa---l~~va~~~gv~a~~i~~  227 (267)
T 2b94_A          153 ADFEVYDTLNKVAQELEVPVFNGIS-LSSDLYYPHK-IIPTRLEDYSKANVAVVEMEVAT---LMVMGTLRKVKTGGIFI  227 (267)
T ss_dssp             CCHHHHHHHHHHHHHTTCCCEEEEE-EEESSHHHHC-CCCTTHHHHHHTTCCEEESSHHH---HHHHHHHHTCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEE-EECCCCCCCC-CCHHHHHHHHHCCCHHHHHHHHH---HHHHHHHCCCCEEEEEE
T ss_conf             9999999999999982998401127-6457664776-42459999987175002257899---99999985998899999


Q ss_pred             EECCC
Q ss_conf             86289
Q gi|254780558|r  327 YLDDQ  331 (396)
Q Consensus       327 fLD~~  331 (396)
                      ..|+.
T Consensus       228 Vsd~~  232 (267)
T 2b94_A          228 VDGCP  232 (267)
T ss_dssp             EEECG
T ss_pred             EECCC
T ss_conf             97776


No 41 
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=32.24  E-value=21  Score=14.50  Aligned_cols=47  Identities=9%  Similarity=-0.032  Sum_probs=25.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCEEEEE-EECCH-HHHHHHHHHHHHHHHCCC
Q ss_conf             8999999999999999999871948999-80887-889999999756887691
Q gi|254780558|r  330 DQVDRDKIREKLKGLEEIARTTGQAIGV-AVAFD-ESIEVISQWLQQEHVRDV  380 (396)
Q Consensus       330 ~~~~~~~I~~qL~~l~~~Ar~~G~AI~i-gh~~p-~Ti~~L~~w~~~l~~~gi  380 (396)
                      ...|...|.+.|.+    ..=+|+.|-+ ...++ ..++.+++-+.-|++.|+
T Consensus       255 G~id~~~i~~~L~~----~gy~G~~ve~e~~~~~~d~~e~~~~s~~~L~~a~~  303 (305)
T 3obe_A          255 GMMNFPNIFKKAYE----IGILGYYVELEGDKKGRTQFEGVEKSAAYLQAAPF  303 (305)
T ss_dssp             SSBCHHHHHHHHHH----HTCCEEEECCCCCSSSCCHHHHHHHHHHHHHHCTT
T ss_pred             CCCCHHHHHHHHHH----CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             65189999999998----29987999995278889999999999999985899


No 42 
>2q02_A Putative cytoplasmic protein; NP_463296.1, structural genomics, joint center for structural genomics, JCSG; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=31.67  E-value=22  Score=14.44  Aligned_cols=12  Identities=25%  Similarity=0.495  Sum_probs=4.2

Q ss_pred             HHHHHHHCCCCE
Q ss_conf             999999859929
Q gi|254780558|r  212 WMKEAKKKGQEA  223 (396)
Q Consensus       212 ~~~~Ar~~G~Ev  223 (396)
                      +++.|+.-|-+.
T Consensus        90 ~i~~A~~lG~~~  101 (272)
T 2q02_A           90 LLRDAQGVGARA  101 (272)
T ss_dssp             HHHHHHHHTCSE
T ss_pred             HHHHHHHCCCCE
T ss_conf             999999809997


No 43 
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=31.67  E-value=22  Score=14.44  Aligned_cols=111  Identities=14%  Similarity=0.095  Sum_probs=59.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHH------HHHHHHHC
Q ss_conf             678998999999999998558935980012300004989999999998506928997497632267------89898709
Q gi|254780558|r  245 KVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLT------RVLAPKLN  318 (396)
Q Consensus       245 ~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva------~~~A~~~g  318 (396)
                      ...|+.+++..|+...+..++....-++.   ....+..........+.....+|+.+.....++-      ....+..+
T Consensus       278 s~E~~~~~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~~~~~~  354 (503)
T 1q57_A          278 MLEESVEETAEDLIGLHNRVRLRQSDSLK---REIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLG  354 (503)
T ss_dssp             ESSSCHHHHHHHHHHHHTTSCCTTCHHHH---HHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCHHHCCCCC---CHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             54578999999999998599834401331---004689999999998751362124326653238899999999998369


Q ss_pred             CCEEEEEEEECCC---------CC-HHHHHHHHHHHHHHHHHCCEEEE-EEECCH
Q ss_conf             9469845886289---------99-99999999999999987194899-980887
Q gi|254780558|r  319 LPYMVADLYLDDQ---------VD-RDKIREKLKGLEEIARTTGQAIG-VAVAFD  362 (396)
Q Consensus       319 vp~~~~dvfLD~~---------~~-~~~I~~qL~~l~~~Ar~~G~AI~-igh~~p  362 (396)
                      +.    -+|||.-         .+ ...+..-+.++..+|++.+..|. +.|+..
T Consensus       355 ~~----~vvID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lA~~~~v~Vi~vahlnr  405 (503)
T 1q57_A          355 CD----VIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKN  405 (503)
T ss_dssp             CS----EEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred             CE----EEEECHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCC
T ss_conf             54----8997124302577754127889999999999999983974999953574


No 44 
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=31.36  E-value=4.2  Score=18.95  Aligned_cols=106  Identities=9%  Similarity=0.048  Sum_probs=61.0

Q ss_pred             CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf             68999999998599299981766568987787855446789989999999999985589359800123000049899999
Q gi|254780558|r  208 SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEV  287 (396)
Q Consensus       208 ~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~  287 (396)
                      ...-.+...|..|+||.-                  |-.+.+.+++.+   .+...-|.++|+...|++.    ...++.
T Consensus        19 G~~~va~~l~~~G~~V~~------------------LG~~~p~e~iv~---~~~~~~~d~V~iS~~~~~~----~~~~~~   73 (137)
T 1ccw_A           19 GNKILDHAFTNAGFNVVN------------------IGVLSPQELFIK---AAIETKADAILVSSLYGQG----EIDCKG   73 (137)
T ss_dssp             HHHHHHHHHHHTTCEEEE------------------EEEEECHHHHHH---HHHHHTCSEEEEEECSSTH----HHHHTT
T ss_pred             HHHHHHHHHHHCCCEEEE------------------CCCCCCHHHHHH---HHHHHCCCEEEEEECCCCC----HHHHHH
T ss_conf             999999999987987997------------------786669999999---9998399878876113445----577999


Q ss_pred             HHHHHHCCCC----EEEECCCC-CCCHHHHHH---HHHCCCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             9999850692----89974976-322678989---87099469845886289999999999999
Q gi|254780558|r  288 IFKEFAKRGL----LFFDDGSS-PRNLTRVLA---PKLNLPYMVADLYLDDQVDRDKIREKLKG  343 (396)
Q Consensus       288 vl~~l~~rgL----~flDs~Ts-~~Sva~~~A---~~~gvp~~~~dvfLD~~~~~~~I~~qL~~  343 (396)
                      +++.|+++|+    .|+--.-. .........   ++.|     .|.+++.....+.+...+.+
T Consensus        74 ~i~~L~~~~~~~v~iivGG~~~~~~~~~~~~~~~l~~~G-----~~~vf~~gt~~~~~~~~i~~  132 (137)
T 1ccw_A           74 LRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDMG-----YDRVYAPGTPPEVGIADLKK  132 (137)
T ss_dssp             HHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHTT-----CSEECCTTCCHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCC-----CCEEECCCCCHHHHHHHHHH
T ss_conf             999999749999979997887887444188999999759-----88897998899999999999


No 45 
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=30.59  E-value=23  Score=14.32  Aligned_cols=95  Identities=15%  Similarity=0.234  Sum_probs=57.7

Q ss_pred             CCCHHHHHHHHHHHHCCCCEEEECCCCCCCH--HH----HHHHHHCCCEEEE-EEEECCC---CCHHHHHHHHHHHHHHH
Q ss_conf             0498999999999850692899749763226--78----9898709946984-5886289---99999999999999999
Q gi|254780558|r  279 LSNKESAEVIFKEFAKRGLLFFDDGSSPRNL--TR----VLAPKLNLPYMVA-DLYLDDQ---VDRDKIREKLKGLEEIA  348 (396)
Q Consensus       279 t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sv--a~----~~A~~~gvp~~~~-dvfLD~~---~~~~~I~~qL~~l~~~A  348 (396)
                      ..+.......++.|..-||.|+--+-.+.+.  .+    .+|+.+....-.. =++||.-   .|...+.+-++.+.++.
T Consensus       701 f~~~~~i~~~l~~L~~vGL~yl~lgq~~~tLSGGE~QRv~LA~~L~~~p~~~~llILDEPTsGLD~~~~~~l~~lL~~L~  780 (842)
T 2vf7_A          701 FADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLV  780 (842)
T ss_dssp             TTTSHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             51146788999999972986333689588888799999999999973888996899979967888999999999999999


Q ss_pred             HHCCEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             871948999808878899999997568
Q gi|254780558|r  349 RTTGQAIGVAVAFDESIEVISQWLQQE  375 (396)
Q Consensus       349 r~~G~AI~igh~~p~Ti~~L~~w~~~l  375 (396)
                      .+.-+.|.|-|-. +.++ ...|+-.+
T Consensus       781 ~~G~TvivItHdl-~~v~-~ADriivm  805 (842)
T 2vf7_A          781 DAGNTVIAVEHKM-QVVA-ASDWVLDI  805 (842)
T ss_dssp             HTTCEEEEECCCH-HHHT-TCSEEEEE
T ss_pred             HCCCEEEEEECCH-HHHH-HCCEEEEC
T ss_conf             7799899992799-9997-59999986


No 46 
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structural genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=30.16  E-value=23  Score=14.28  Aligned_cols=48  Identities=15%  Similarity=0.211  Sum_probs=32.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             2899999999999999999987194899980887889999999756887691899
Q gi|254780558|r  329 DDQVDRDKIREKLKGLEEIARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVSVV  383 (396)
Q Consensus       329 D~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p~Ti~~L~~w~~~l~~~gi~lV  383 (396)
                      |...|-..|.+.|.       ..+..+.+-.-...-.+.+.+.+..+..+.++++
T Consensus       231 ~G~id~~~~~~~L~-------~~~g~~slE~~~~~~~~~~~~~~~~l~~~~l~~~  278 (286)
T 3dx5_A          231 EGIVNYDEIIQEVR-------DTDHFASLEWFGHNAKDILKAEMKVLTNRNLEVV  278 (286)
T ss_dssp             GSSSCHHHHHHHHT-------TSSCEEEECCCSSCHHHHHHHHHHHHHHCC----
T ss_pred             CCCCCHHHHHHHHH-------CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             71358999999987-------8997699998589857889999999998688998


No 47 
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic degradation; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=29.74  E-value=24  Score=14.23  Aligned_cols=87  Identities=13%  Similarity=0.189  Sum_probs=60.9

Q ss_pred             CCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf             04989999999998506928997497632267898987099469845886289999999999999999998719489998
Q gi|254780558|r  279 LSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVA  358 (396)
Q Consensus       279 t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~ig  358 (396)
                      -.+..+++-+=+.++-.|+-.+==+      ...++..+|+|-         +.+...+...+++..+.++++|...||-
T Consensus       173 IEt~eavenldeI~av~GvD~i~iG------P~DLS~slG~pg---------~~~~p~v~~ai~~v~~~~~~~gk~~G~~  237 (287)
T 2v5j_A          173 IETREAMKNLPQILDVEGVDGVFIG------PADLSADMGYAG---------NPQHPEVQAAIEQAIVQIRESGKAPGIL  237 (287)
T ss_dssp             ECSHHHHHTHHHHHTSTTEEEEEEC------HHHHHHHTTSTT---------CCCSHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCCHHHHHHHHHHHCCCCCCEEEEC------HHHHHHHCCCCC---------CCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             2559999989998644788769989------288875317888---------9998789999999999999859952475


Q ss_pred             ECCHHHHHHHHHHHHHHHHCCCEEEEHHH
Q ss_conf             08878899999997568876918996777
Q gi|254780558|r  359 VAFDESIEVISQWLQQEHVRDVSVVPLSC  387 (396)
Q Consensus       359 h~~p~Ti~~L~~w~~~l~~~gi~lVpvS~  387 (396)
                      ..   +.+.+++|+.    +|+.++-++.
T Consensus       238 ~~---~~~~~~~~~~----~G~~~i~~g~  259 (287)
T 2v5j_A          238 IA---NEQLAKRYLE----LGALFVAVGV  259 (287)
T ss_dssp             CC---CHHHHHHHHH----TTCSEEEEEE
T ss_pred             CC---CHHHHHHHHH----CCCCEEEEHH
T ss_conf             79---9999999998----3998999758


No 48 
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, degradation of homoprotocatechuate, class II aldolase; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=29.55  E-value=24  Score=14.21  Aligned_cols=87  Identities=14%  Similarity=0.140  Sum_probs=60.5

Q ss_pred             CCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf             04989999999998506928997497632267898987099469845886289999999999999999998719489998
Q gi|254780558|r  279 LSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVA  358 (396)
Q Consensus       279 t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~ig  358 (396)
                      -.+..+++.+=+.++--|+-.+==      -...++..+|+|-         +.+...+...+++..+.++++|...||.
T Consensus       152 IEt~~av~nleeI~av~GvD~i~i------Gp~DLS~slG~pg---------~~~~p~v~~ai~~v~~~~~~~gk~~G~~  216 (267)
T 2vws_A          152 VESKTALDNLDEILDVEGIDGVFI------GPADLSASLGYPD---------NAGHPEVQRIIETSIRRIRAAGKAAGFL  216 (267)
T ss_dssp             CCSHHHHHTHHHHHTSTTCCEEEE------CHHHHHHHTTCSS---------SCCTHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCHHHHHHHHHHHCCCCCCEEEE------CCHHHHHHCCCCC---------CCCCHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf             266999997998745689853567------8077887339998---------8998368999999999999869976663


Q ss_pred             ECCHHHHHHHHHHHHHHHHCCCEEEEHHH
Q ss_conf             08878899999997568876918996777
Q gi|254780558|r  359 VAFDESIEVISQWLQQEHVRDVSVVPLSC  387 (396)
Q Consensus       359 h~~p~Ti~~L~~w~~~l~~~gi~lVpvS~  387 (396)
                      ..-++   -+++|.    ++|+.++-++.
T Consensus       217 ~~~~~---~~~~~~----~~G~~~~~~g~  238 (267)
T 2vws_A          217 AVAPD---MAQQCL----AWGANFVAVGV  238 (267)
T ss_dssp             CSSHH---HHHHHH----HTTCCEEEEEE
T ss_pred             CCCHH---HHHHHH----HCCCCEEEEHH
T ss_conf             79999---999999----74999999628


No 49 
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Probab=28.27  E-value=25  Score=14.07  Aligned_cols=50  Identities=22%  Similarity=0.284  Sum_probs=38.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEE
Q ss_conf             30000498999999999850692899749763226789898709946984
Q gi|254780558|r  275 GAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVA  324 (396)
Q Consensus       275 Gs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~  324 (396)
                      |+-+.++.-.=..++..-.++=.+|+...-+..|-+.-+|+.+|+|+...
T Consensus       155 ~~ILVa~~LtPsd~~~l~~~~v~Givt~~GG~tSH~AIlARslgIPavvG  204 (258)
T 1zym_A          155 EVILVAADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVG  204 (258)
T ss_dssp             CEEEECSCCCHHHHHHSCGGGEEEEECSCCCSSSHHHHHHHHHTCCEECC
T ss_pred             CEEEEECCCCHHHHHHCCHHHEEEEEECCCCCCCHHHHHHHHCCCCEEEE
T ss_conf             87999707985777543600426788616997769999999849987984


No 50 
>3egl_A DEGV family protein; alpha-beta-alpha sandwich, methylated lysines, structural genomics, PSI-2; HET: MLY MSE PLM; 2.41A {Corynebacterium glutamicum atcc 13032}
Probab=26.44  E-value=27  Score=13.87  Aligned_cols=79  Identities=10%  Similarity=0.002  Sum_probs=43.2

Q ss_pred             HHHHHHHCC-CEEEE----EEEECCCCCHHHHHHH-HHHHHHHHHHCCEEEEEEECC-HHHHHHHHHHHHHHHHCC--CE
Q ss_conf             898987099-46984----5886289999999999-999999998719489998088-788999999975688769--18
Q gi|254780558|r  311 RVLAPKLNL-PYMVA----DLYLDDQVDRDKIREK-LKGLEEIARTTGQAIGVAVAF-DESIEVISQWLQQEHVRD--VS  381 (396)
Q Consensus       311 ~~~A~~~gv-p~~~~----dvfLD~~~~~~~I~~q-L~~l~~~Ar~~G~AI~igh~~-p~Ti~~L~~w~~~l~~~g--i~  381 (396)
                      ..++.-+++ |...-    -..++..++.....++ ++.++.....+..-|.|+|.. ++..+.|++.+.+.-..+  +.
T Consensus       160 a~ig~lL~IKPIl~~~~G~i~~~~k~R~~kka~~~li~~~~~~~~~~~~~i~i~~~~~~e~a~~l~~~l~~~~~~~~~i~  239 (277)
T 3egl_A          160 AMVSTALATRPIMRFNGGRMEIAAXTRTQSXAFAXLVELAQIRADGEPVFIAIGQNEAREAAXQLEELLRNALPEGSSFM  239 (277)
T ss_dssp             CSSGGGGCSSCEEEEETTEEEEEECCCSHHHHHHHHHHHHHHHHTTSCCEEEEEEESCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             HHHHHHHCCEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             99987528569999979989995530568999999999999860799679999918998999999999998669987499


Q ss_pred             EEEHHHHH
Q ss_conf             99677743
Q gi|254780558|r  382 VVPLSCLA  389 (396)
Q Consensus       382 lVpvS~l~  389 (396)
                      ..+++..+
T Consensus       240 ~~~~gp~i  247 (277)
T 3egl_A          240 SVDIDPTL  247 (277)
T ss_dssp             EEECCHHH
T ss_pred             EEEECCEE
T ss_conf             99878599


No 51 
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A*
Probab=25.93  E-value=27  Score=13.81  Aligned_cols=170  Identities=9%  Similarity=0.126  Sum_probs=96.4

Q ss_pred             EEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             99973778771688999983793508987089876899999999859929998176656898778785544678998999
Q gi|254780558|r  174 AIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQL  253 (396)
Q Consensus       174 AIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~  253 (396)
                      -|.=-|.|.+.. ...+..+.+..|| ++..........-+++++.|.+..++.=.+  +|... .|+            
T Consensus        75 rVLDiGCGwG~~-a~~~a~~~g~~v~-gitlS~~Q~~~a~~~~~~~gl~~~v~~~~~--d~~~~-~~~------------  137 (302)
T 3hem_A           75 TLLDIGCGWGST-MRHAVAEYDVNVI-GLTLSENQYAHDKAMFDEVDSPRRKEVRIQ--GWEEF-DEP------------  137 (302)
T ss_dssp             EEEEETCTTSHH-HHHHHHHHCCEEE-EEECCHHHHHHHHHHHHHSCCSSCEEEEEC--CGGGC-CCC------------
T ss_pred             EEEEECCCCCHH-HHHHHHHCCCEEE-EEECCHHHHHHHHHHHHHHHCCHHHHHHHC--CCCCC-CCC------------
T ss_conf             898857885399-9999998698389-983778899999999987400212334440--43234-788------------


Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCC-----CHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHC----------
Q ss_conf             999999998558935980012300004-----98999999999850692899749763226789898709----------
Q gi|254780558|r  254 LNRLRYSLRRGTGYFGVMNYRGAMLLS-----NKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLN----------  318 (396)
Q Consensus       254 ~~~l~~~l~~~p~~vGvnNhmGs~~t~-----~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~g----------  318 (396)
                             +++ --.+|+..||+.+...     -+..++.+-+.|+.-|.+|+..-+.++..   -+...+          
T Consensus       138 -------fD~-ivSie~~EHv~~~~~~~~~~~~~~~f~~i~~~LkPgG~~~l~~i~~~~~~---~~~~~~~~~~~~~~~~  206 (302)
T 3hem_A          138 -------VDR-IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKE---EAQELGLTSPMSLLRF  206 (302)
T ss_dssp             -------CSE-EEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHH---HHHHHTCCCCHHHHHH
T ss_pred             -------CCE-EEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCH---HHHHCCCCCHHHHHCC
T ss_conf             -------675-53115688731221012688999999999985699874999999457821---2110367886775333


Q ss_pred             CCEEEEEEEECCC-CCHHHHHHHHHHHHHHHHHCCEEEE-EEECCHHHHHHHHHHHHHHHHC
Q ss_conf             9469845886289-9999999999999999987194899-9808878899999997568876
Q gi|254780558|r  319 LPYMVADLYLDDQ-VDRDKIREKLKGLEEIARTTGQAIG-VAVAFDESIEVISQWLQQEHVR  378 (396)
Q Consensus       319 vp~~~~dvfLD~~-~~~~~I~~qL~~l~~~Ar~~G~AI~-igh~~p~Ti~~L~~w~~~l~~~  378 (396)
                      .++..+.+|-... ++.       .++...+.+.|.-|- +-...+.-...|..|...++++
T Consensus       207 ~~fi~kyiFpgg~lps~-------~~~~~~~~~~gf~v~~~~~~g~hY~~Tl~~W~~~~~~~  261 (302)
T 3hem_A          207 IKFILTEIFPGGRLPRI-------SQVDYYSSNAGWKVERYHRIGANYVPTLNAWADALQAH  261 (302)
T ss_dssp             HHHHHHHTCTTCCCCCH-------HHHHHHHHHHTCEEEEEEECGGGHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHCCCCCCCCCH-------HHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             21565203686678978-------99986522386699999955351999999999999985


No 52 
>1ysq_A HTH-type transcriptional regulator YIAJ; YAIJ, ICLR, structural genomics, PSI, protein structure initiative; 1.75A {Escherichia coli}
Probab=24.93  E-value=29  Score=13.69  Aligned_cols=78  Identities=1%  Similarity=-0.163  Sum_probs=47.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC--CHHHHHHHHHCC
Q ss_conf             544678998999999999998558935980012300004989999999998506928997497632--267898987099
Q gi|254780558|r  242 YTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPR--NLTRVLAPKLNL  319 (396)
Q Consensus       242 ~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~--Sva~~~A~~~gv  319 (396)
                      ..|+..|+++++++.+......++.+       ..+.-.|.+.+..-+++++++|+.+-++.....  +++.-+-...|-
T Consensus        71 r~lLA~l~~~~~~~~l~~~~~~~~~~-------t~~t~~~~~~l~~~l~~ir~~G~a~~~~e~~~g~~~iAvPi~~~~g~  143 (193)
T 1ysq_A           71 KIYMAFGHPDYVKSYWESHQHEIQPL-------TRNTITELPAMFDELAHIRESGAAMDREENELGVSCIAVPVFDIHGR  143 (193)
T ss_dssp             HHHHHTSCHHHHHHHHHHTTTTCCCS-------STTCCCSHHHHHHHHHHHHHHTCEEEESSSSTTEEEEEEEECCTTSC
T ss_pred             HHHHHCCCHHHHHHHHHHCCCCCCCC-------CCCCHHHHHHHHHHHHHHHHCCEECCCCCCCCCCEEEEEEEECCCCC
T ss_conf             99996499999999998444446555-------76640138999999999986264501330256825899999889999


Q ss_pred             CEEEEEE
Q ss_conf             4698458
Q gi|254780558|r  320 PYMVADL  326 (396)
Q Consensus       320 p~~~~dv  326 (396)
                      +.+.-.+
T Consensus       144 ~~~aisi  150 (193)
T 1ysq_A          144 VPYAVSI  150 (193)
T ss_dssp             CSEEEEE
T ss_pred             EEEEEEE
T ss_conf             9999999


No 53 
>3kws_A Putative sugar isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=24.89  E-value=29  Score=13.69  Aligned_cols=83  Identities=11%  Similarity=0.114  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-------CCCCEEEE--ECCCCCCC
Q ss_conf             8999999998599299981766568987787855446789989999999999985-------58935980--01230000
Q gi|254780558|r  209 LDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRR-------GTGYFGVM--NYRGAMLL  279 (396)
Q Consensus       209 ~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~-------~p~~vGvn--NhmGs~~t  279 (396)
                      .++.++.|+.-|-..++..|--...          .......++..+.+...|.+       .---+++=  ||..+-|.
T Consensus       106 ~k~~i~~a~~lGa~~v~~~~~~~~~----------~~~~~~~~e~~~~~~~~l~~l~~~A~~~Gv~l~~E~~~~~~~~~~  175 (287)
T 3kws_A          106 MKEIIAAAGELGSTGVIIVPAFNGQ----------VPALPHTMETRDFLCEQFNEMGTFAAQHGTSVIFEPLNRKECFYL  175 (287)
T ss_dssp             HHHHHHHHHHTTCSEEEECSCCTTC----------CSBCCSSHHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTTCSSC
T ss_pred             HHHHHHHHHHHCCCCEEECCCCCCC----------CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEE
T ss_conf             9999999999599803424566777----------888888899999999999999999996298799996435687000


Q ss_pred             CCHHHHHHHHHHHHCCCCEE-EE
Q ss_conf             49899999999985069289-97
Q gi|254780558|r  280 SNKESAEVIFKEFAKRGLLF-FD  301 (396)
Q Consensus       280 ~~~~~m~~vl~~l~~rgL~f-lD  301 (396)
                      .+..-...+++.+...++.+ +|
T Consensus       176 ~t~~~~~~l~~~v~~p~~gl~~D  198 (287)
T 3kws_A          176 RQVADAASLCRDINNPGVRCMGD  198 (287)
T ss_dssp             CCHHHHHHHHHHHCCTTEEEEEE
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCC
T ss_conf             67899778998738665554434


No 54 
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=24.62  E-value=20  Score=14.63  Aligned_cols=25  Identities=28%  Similarity=0.332  Sum_probs=13.5

Q ss_pred             CCEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf             9289974976322678989870994
Q gi|254780558|r  296 GLLFFDDGSSPRNLTRVLAPKLNLP  320 (396)
Q Consensus       296 gL~flDs~Ts~~Sva~~~A~~~gvp  320 (396)
                      -.+.||+|.+.+-+..++|+++|++
T Consensus        38 v~~LvDTGA~~~~Is~~~a~~lgl~   62 (148)
T 2i1a_A           38 VKAFVDTGAQTTIMSTRLAKKTGLS   62 (148)
T ss_dssp             EEEEECTTCSSCEEEHHHHHHHTGG
T ss_pred             EEEEECCCCCEEEECHHHHHHCCCC
T ss_conf             9999827982688679999872996


No 55 
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=24.40  E-value=29  Score=13.63  Aligned_cols=78  Identities=10%  Similarity=-0.003  Sum_probs=44.0

Q ss_pred             CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCHHHHH
Q ss_conf             689999999985992999817665689877878554467899899999999999855893-5980012300004989999
Q gi|254780558|r  208 SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGY-FGVMNYRGAMLLSNKESAE  286 (396)
Q Consensus       208 ~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~-vGvnNhmGs~~t~~~~~m~  286 (396)
                      ..+++++.|+.-|-.+++--+..                ..+.+...++|........++ +.+-+|..+.+.+...++ 
T Consensus       106 ~~~~~i~~a~~lg~~~v~~~~~~----------------~~~~~~~~~~l~~l~~~A~~~gi~l~~~~~~~v~t~~~~~-  168 (296)
T 2g0w_A          106 KEQTTFHMARLFGVKHINCGLLE----------------KIPEEQIIVALGELCDRAEELIIGLEFMPYSGVADLQAAW-  168 (296)
T ss_dssp             HHHHHHHHHHHHTCCEEEECCCS----------------CCCHHHHHHHHHHHHHHHTTSEEEEECCTTSSSCSHHHHH-
T ss_pred             HHHHHHHHHHHHCCCEEEECCCC----------------CHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHH-
T ss_conf             99999999997199989647998----------------1178999999999999834685699970577789999999-


Q ss_pred             HHHHHHHCCCCEEEEC
Q ss_conf             9999985069289974
Q gi|254780558|r  287 VIFKEFAKRGLLFFDD  302 (396)
Q Consensus       287 ~vl~~l~~rgL~flDs  302 (396)
                      .+++.+...++.++=+
T Consensus       169 ~l~~~v~~~~~g~~~D  184 (296)
T 2g0w_A          169 RVAEACGRDNAQLICD  184 (296)
T ss_dssp             HHHHHHTCTTEEEEEE
T ss_pred             HHHHHCCCCCCEEEEC
T ss_conf             9998537654236405


No 56 
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=24.39  E-value=29  Score=13.63  Aligned_cols=152  Identities=11%  Similarity=0.067  Sum_probs=85.8

Q ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             68658999737787716889999837935089870898768999999998599299981766568987787855446789
Q gi|254780558|r  169 SGARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQ  248 (396)
Q Consensus       169 ~~~riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~  248 (396)
                      +...+.||-..=|.+.+.-.-.+                     +..+..+|+-|++                  +...|
T Consensus        66 ~~G~l~vi~g~pg~GKT~~~l~l---------------------~~~~~~~g~~vl~------------------~SlEm  106 (315)
T 3bh0_A           66 KRRNFVLIAARPSMGKTAFALKQ---------------------AKNMSDNDDVVNL------------------HSLEM  106 (315)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHH---------------------HHHHHTTTCEEEE------------------EESSS
T ss_pred             CCCCEEEEEECCCCCHHHHHHHH---------------------HHHHHCCCCEEEE------------------EECCC
T ss_conf             88808999957999999999999---------------------9987416982999------------------84768


Q ss_pred             CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC----CHHHHHHHHHCCCEEEE
Q ss_conf             98999999999998558935980012300004989999999998506928997497632----26789898709946984
Q gi|254780558|r  249 TVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPR----NLTRVLAPKLNLPYMVA  324 (396)
Q Consensus       249 ~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~----Sva~~~A~~~gvp~~~~  324 (396)
                      +.+++..|+...+..++... +-+.....-..+..........+....+++.+......    +......++.+..  ..
T Consensus       107 ~~~~l~~R~~~~~~~v~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  183 (315)
T 3bh0_A          107 GKKENIKRLIVTAGSINAQK-IKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGK--RV  183 (315)
T ss_dssp             CHHHHHHHHHHHHTTCCHHH-HHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSC--CE
T ss_pred             CHHHHHHHHHHHHHCCCHHH-HHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC--CC
T ss_conf             88789999999984854554-4213431348899999999987641874785487753489999999988863477--52


Q ss_pred             EEEECCC----------CCHHHHHHHHHHHHHHHHHCCEEEEEE-ECCH
Q ss_conf             5886289----------999999999999999998719489998-0887
Q gi|254780558|r  325 DLYLDDQ----------VDRDKIREKLKGLEEIARTTGQAIGVA-VAFD  362 (396)
Q Consensus       325 dvfLD~~----------~~~~~I~~qL~~l~~~Ar~~G~AI~ig-h~~p  362 (396)
                      -+|+|.-          .....|..-..+|..+|++.+..|.+. |...
T Consensus       184 viviD~l~~~~~~~~~~~~~~~i~~i~~~Lk~lA~~~~i~ii~lsQlnr  232 (315)
T 3bh0_A          184 IVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSR  232 (315)
T ss_dssp             EEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCG
T ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             1057798750367778789999999999999999973997899975363


No 57 
>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 2.80A {Bacillus halodurans}
Probab=24.00  E-value=30  Score=13.58  Aligned_cols=79  Identities=16%  Similarity=0.190  Sum_probs=42.6

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCC---------------------CCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             35089870898768999999998599299981766---------------------568987787855446789989999
Q gi|254780558|r  196 ANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQ---------------------AFDESYNEDDSYTLKVTQTVQQLL  254 (396)
Q Consensus       196 ~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPME---------------------p~~~~~~~pGp~~L~~~~~~~~~~  254 (396)
                      ++..+-|.=.++..+..++.|...|++|.+.=|=+                     .+..-..|+.-..+..+.+.+.-.
T Consensus       198 p~~~L~I~GaGhva~~la~la~~lgf~V~v~D~r~~~~~~~~~p~~~~~~~~~~~~~l~~~~~d~~t~vvi~Th~h~~D~  277 (362)
T 3on5_A          198 PKERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQCEKHFFPDADEIIVDFPADFLRKFLIRPDDFVLIMTHHFQKDQ  277 (362)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGGCGGGCTTCSEEEESCHHHHHHHSCCCTTCEEEECCSCHHHHH
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHCCCEEEEECCCHHHCCHHCCCCCCEEECCCCHHHHHHCCCCCCCEEEEEECCHHHHH
T ss_conf             98559997066508999999987897899974863433011088863364268155554025666858999817806699


Q ss_pred             HHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             99999998558935980012300
Q gi|254780558|r  255 NRLRYSLRRGTGYFGVMNYRGAM  277 (396)
Q Consensus       255 ~~l~~~l~~~p~~vGvnNhmGs~  277 (396)
                      ..|..+|.+=+.|+|+   ||||
T Consensus       278 ~~L~~~L~~~~~YiG~---lGSr  297 (362)
T 3on5_A          278 EILHFLLEKELRYIGI---LGSK  297 (362)
T ss_dssp             HHHHHHSSSCCSEEEE---SSCH
T ss_pred             HHHHHHHCCCCCEEEE---ECCH
T ss_conf             9999996499988999---8878


No 58 
>1izc_A Macrophomate synthase intermolecular diels- alderase; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=23.71  E-value=30  Score=13.55  Aligned_cols=143  Identities=14%  Similarity=0.046  Sum_probs=83.0

Q ss_pred             CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE---------------
Q ss_conf             76899999999859929998176656898778785544678998999999999998558935980---------------
Q gi|254780558|r  207 NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVM---------------  271 (396)
Q Consensus       207 ~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvn---------------  271 (396)
                      .+...++.++-..|-.-++ +       |..+          +.+|.++.+.+..=-=-|.-|+.               
T Consensus       104 ~~~~~~i~~~LD~Ga~GIi-v-------P~V~----------s~eeA~~~V~a~rypP~G~Rg~~~~~~~~g~~~~~~~~  165 (339)
T 1izc_A          104 KHDEVSLSTALDAGAAGIV-I-------PHVE----------TVEEVREFVKEMYYGPIGRRSFSPWTFSPGIADASLFP  165 (339)
T ss_dssp             TTCHHHHHHHHHHTCSEEE-E-------TTCC----------CHHHHHHHHHHHSCTTTCCCCCCSTTCBTTTBCCCSST
T ss_pred             CCCHHHHHHHHHCCCCEEE-E-------CCCC----------CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCC
T ss_conf             8887999999717999899-7-------7869----------99999999997402888886767653334433111127


Q ss_pred             ----------ECCCC-CCCCCHHHHHHHHHHHHCCC--CEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHH
Q ss_conf             ----------01230-00049899999999985069--289974976322678989870994698458862899999999
Q gi|254780558|r  272 ----------NYRGA-MLLSNKESAEVIFKEFAKRG--LLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIR  338 (396)
Q Consensus       272 ----------NhmGs-~~t~~~~~m~~vl~~l~~rg--L~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~  338 (396)
                                ++.-- -.-.+..+++.+=+.++--|  .+|+-        ...++..+|+|...   .+ .+.+...+.
T Consensus       166 ~~~~y~~~~n~~~~vi~qIEt~~av~nldeI~av~GVD~i~iG--------p~DLs~slG~p~~~---~~-g~~~~p~v~  233 (339)
T 1izc_A          166 NDPYNVATSNNHVCIIPQIESVKGVENVDAIAAMPEIHGLMFG--------PGDYMIDAGLDLNG---AL-SGVPHPTFV  233 (339)
T ss_dssp             TCTTCHHHHHHHCEEEEEECSHHHHHTHHHHHTCTTCCCEEEC--------HHHHHHHTTCCTTC---CT-TSCCCHHHH
T ss_pred             CCHHHHHHHHHHCCEEECCCCHHHHHHHHHHHCCCCCCEEEEC--------CHHHHHHCCCCCCC---CC-CCCCCHHHH
T ss_conf             6467899875413330003778999989998632687569977--------06889856998666---57-888998999


Q ss_pred             HHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEHH
Q ss_conf             999999999987194899980887889999999756887691899677
Q gi|254780558|r  339 EKLKGLEEIARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVSVVPLS  386 (396)
Q Consensus       339 ~qL~~l~~~Ar~~G~AI~igh~~p~Ti~~L~~w~~~l~~~gi~lVpvS  386 (396)
                      ..+++..+.++++|..+++...-++.+.   .|    .++|+.+|-++
T Consensus       234 ~Ai~~i~~aa~~~Gk~~g~~~~~~~~~~---~~----i~~G~~~v~~g  274 (339)
T 1izc_A          234 EAMTKFSTAAQRNGVPIFGGALSVDMVP---SL----IEQGYRAIAVQ  274 (339)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECSSGGGHH---HH----HHTTEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCHHHHH---HH----HHCCCCEEEEH
T ss_conf             9999999999986995797069999999---99----98399899972


No 59 
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B*
Probab=23.56  E-value=30  Score=13.53  Aligned_cols=33  Identities=12%  Similarity=0.109  Sum_probs=20.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             544678998999999999998558935980012
Q gi|254780558|r  242 YTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYR  274 (396)
Q Consensus       242 ~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhm  274 (396)
                      ..|...|+..++.+++..++.+-.+-+-+.|+.
T Consensus       390 yDl~PeMsA~ev~~~~i~~i~~~~~d~i~vn~a  422 (561)
T 3igz_B          390 FNEKPRMQSAAITEAAIEALKSGMYNVVRINFP  422 (561)
T ss_dssp             GGGSTTTTHHHHHHHHHHHHHHSCCSEEEEEEC
T ss_pred             HHCCCCCCHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             101876664676766788875579888998467


No 60 
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=23.19  E-value=31  Score=13.48  Aligned_cols=87  Identities=13%  Similarity=0.176  Sum_probs=59.7

Q ss_pred             CCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf             04989999999998506928997497632267898987099469845886289999999999999999998719489998
Q gi|254780558|r  279 LSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVA  358 (396)
Q Consensus       279 t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~ig  358 (396)
                      -.+..+++.+=+.++-.|+-.+==+      ...++..+|+|         .+.+...+.+.+++..+.++++|...||-
T Consensus       152 IEt~~av~nldeI~av~GvD~i~iG------p~DLs~slG~~---------g~~~~p~v~~ai~~v~~~~~~~gk~~G~~  216 (256)
T 1dxe_A          152 IESQQGVDNVDAIAATEGVDGIFVG------PSDLAAALGHL---------GNASHPDVQKAIQHIFNRASAHGKPSGIL  216 (256)
T ss_dssp             ECSHHHHHTHHHHHTSTTCCEEEEC------HHHHHHHTTCT---------TCTTSHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HCCHHHHHHHHHHHCCCCCCEEEEC------HHHHHHHCCCC---------CCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             1167899878886057898525677------48898742888---------89898799999999999999859986882


Q ss_pred             ECCHHHHHHHHHHHHHHHHCCCEEEEHHH
Q ss_conf             08878899999997568876918996777
Q gi|254780558|r  359 VAFDESIEVISQWLQQEHVRDVSVVPLSC  387 (396)
Q Consensus       359 h~~p~Ti~~L~~w~~~l~~~gi~lVpvS~  387 (396)
                      ...+   +.+++|.    ++|+.++-++.
T Consensus       217 ~~~~---~~~~~~~----~~G~~~i~~g~  238 (256)
T 1dxe_A          217 APVE---ADARRYL----EWGATFVAVGS  238 (256)
T ss_dssp             CCSH---HHHHHHH----HTTCCEEEEEE
T ss_pred             CCCH---HHHHHHH----HHCCCEEEEHH
T ss_conf             7999---9999999----81999999579


No 61 
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=23.08  E-value=31  Score=13.47  Aligned_cols=181  Identities=13%  Similarity=0.130  Sum_probs=101.6

Q ss_pred             CEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCC-EEEECCCCCCCC-CCCC--------CC
Q ss_conf             6589997377877168899998379350898708987689999999985992-999817665689-8778--------78
Q gi|254780558|r  171 ARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQE-AILQIPMQAFDE-SYNE--------DD  240 (396)
Q Consensus       171 ~riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~E-vllhlPMEp~~~-~~~~--------pG  240 (396)
                      .|+.|=||-     ..|.|--..-.          -|+.-+.+..+-+.|-+ +-+|+= |-... .+.|        ..
T Consensus        32 ~rL~VNIdh-----VAtLRnaRg~~----------~Pd~~~aA~~~~~~GAdgITvHlR-eDrRHI~d~Dv~~l~~~~~~   95 (278)
T 3gk0_A           32 IDLGVNIDH-----VATLRNARGTA----------YPDPVRAALAAEDAGADAITLHLR-EDRRHIVDADVRTLRPRVKT   95 (278)
T ss_dssp             SEEEEECHH-----HHHHHHHHSSS----------CSCHHHHHHHHHHTTCSEEEEECC-TTCSSSCHHHHHHHHHHCSS
T ss_pred             EEEEEEECC-----EEEECCCCCCC----------CCCHHHHHHHHHHCCCCEEEECCC-CCCCCCCHHHHHHHHHHHCC
T ss_conf             488664111-----54201058989----------999999999999829986895268-87565758999999987377


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE--------CCCCCCCCCHHHHHHHHHHHHCCCC---EEEECCCCCCCH
Q ss_conf             55446789989999999999985589359800--------1230000498999999999850692---899749763226
Q gi|254780558|r  241 SYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMN--------YRGAMLLSNKESAEVIFKEFAKRGL---LFFDDGSSPRNL  309 (396)
Q Consensus       241 p~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnN--------hmGs~~t~~~~~m~~vl~~l~~rgL---~flDs~Ts~~Sv  309 (396)
                      +  |-..|.+.  ..-+.-+++--|..+-+.-        .-|=-+..+...+..+++.|++.|.   +|+|.    .-.
T Consensus        96 ~--lNlE~a~~--~e~i~ia~~~kP~qvtLVPE~r~elTTegGlDv~~~~~~L~~~i~~Lk~~gIrVSLFIDP----d~~  167 (278)
T 3gk0_A           96 R--MNLECAVT--PEMLDIACEIRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFIDP----DEA  167 (278)
T ss_dssp             C--EEEEECSS--HHHHHHHHHHCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEECS----CHH
T ss_pred             C--CCCCCCCC--HHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEECC----CHH
T ss_conf             5--57788870--999999996699879988888555455576620625999999999999749817998369----878


Q ss_pred             HHHHHHHHCCCEEEEEEE--EC--CCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCH-HHHHHHHHHHHHHH
Q ss_conf             789898709946984588--62--899999999999999999987194899980887-88999999975688
Q gi|254780558|r  310 TRVLAPKLNLPYMVADLY--LD--DQVDRDKIREKLKGLEEIARTTGQAIGVAVAFD-ESIEVISQWLQQEH  376 (396)
Q Consensus       310 a~~~A~~~gvp~~~~dvf--LD--~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p-~Ti~~L~~w~~~l~  376 (396)
                      .-..|++.|+...+-+--  -+  +..+......++.++.+.|++.|.-|--||-.. +++..|.+ ++.++
T Consensus       168 qi~~A~~~Gad~IELhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgLn~~Nl~~i~~-ip~i~  238 (278)
T 3gk0_A          168 QIRAAHETGAPVIELHTGRYADAHDAAEQQREFERIATGVDAGIALGLKVNAGHGLHYTNVQAIAA-LPGIA  238 (278)
T ss_dssp             HHHHHHHHTCSEEEECCHHHHTCSSHHHHHHHHHHHHHHHHHHHHTTCEEEECTTCCTTTHHHHHT-CTTEE
T ss_pred             HHHHHHHCCCCEEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHC-CCCCE
T ss_conf             999985059997997233553325432007999999999999997187574678988667899861-89976


No 62 
>3ddo_A Urdpase, upase, uridine phosphorylase; transferase, cytoplasm, glycosyltransferase; 1.50A {Salmonella typhimurium} PDB: 1ryz_A 1sj9_A* 1y1q_A* 1y1s_A 1y1r_A 1zl2_A* 2hn9_A 1y1t_A* 2hsw_A 2hwu_A* 2pga_A* 2hrd_A 3dps_A 3fwp_A* 3c74_A* 2qdk_A 2iq5_A 2oec_A* 2i8a_A 2rj3_A ...
Probab=21.76  E-value=33  Score=13.31  Aligned_cols=83  Identities=10%  Similarity=0.049  Sum_probs=52.9

Q ss_pred             CHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCC-----------CHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH
Q ss_conf             9899999999999855--8935980012300004-----------98999999999850692899749763226789898
Q gi|254780558|r  249 TVQQLLNRLRYSLRRG--TGYFGVMNYRGAMLLS-----------NKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAP  315 (396)
Q Consensus       249 ~~~~~~~~l~~~l~~~--p~~vGvnNhmGs~~t~-----------~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~  315 (396)
                      ...++.+.+..++...  +..+|.+ ..+..|-.           ........++.+.+.|..-+|=-++.   ...+|.
T Consensus       132 ~d~~l~~~~~~~~~~~~~~~~~G~~-~S~D~Fy~~~~r~~~~~~~~~~~~~~~~~~~~~~gv~avEMEsaa---l~~va~  207 (253)
T 3ddo_A          132 ADFACTTALVEAAKSIGATTHVGVT-ASSDTFYPGQERYDTYSGRVVRRFKGSMEEWQAMGVMNYEMESAT---LLTMCA  207 (253)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEEE-EEESCSSGGGTCCCSSSCCCCGGGTTHHHHHHHTTCCEEESSHHH---HHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEE-EECCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHH---HHHHHH
T ss_conf             5878999999988864997279998-015840568753332024566888999999986398532257999---999999


Q ss_pred             HHCCCEEEEEEEECCCCCHH
Q ss_conf             70994698458862899999
Q gi|254780558|r  316 KLNLPYMVADLYLDDQVDRD  335 (396)
Q Consensus       316 ~~gvp~~~~dvfLD~~~~~~  335 (396)
                      ..|+|++.--+..||..+.+
T Consensus       208 ~~gv~~~~i~~isdn~~~~~  227 (253)
T 3ddo_A          208 SQGLRAGMVAGVIVNRTQQE  227 (253)
T ss_dssp             TTTCEEEEEEEECCCTTC--
T ss_pred             HCCCCEEEEEEEECCCCCCC
T ss_conf             84996899999980366677


No 63 
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=21.73  E-value=33  Score=13.30  Aligned_cols=78  Identities=13%  Similarity=0.093  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCC----CCEEEECCCCC-CC--HHHHHHHHHCCCEE--EE
Q ss_conf             999999998558935980012300004989999999998506----92899749763-22--67898987099469--84
Q gi|254780558|r  254 LNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKR----GLLFFDDGSSP-RN--LTRVLAPKLNLPYM--VA  324 (396)
Q Consensus       254 ~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~r----gL~flDs~Ts~-~S--va~~~A~~~gvp~~--~~  324 (396)
                      ++.|+|+++.++..+-..     -|-.|..+|-.++..+...    ..+|+|.+--. .|  -..++++.++.+..  ..
T Consensus        31 ~eii~wa~~~~~~~~~~~-----SfGkdS~VlLhL~~~v~~~~~~~~VvfiDTG~efpET~e~ve~l~~~~~~~~~~~~~  105 (261)
T 2oq2_A           31 QEIIAWSIVTFPHLFQTT-----AFGLTGLVTIDMLSKLSEKYYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIH  105 (261)
T ss_dssp             HHHHHHHHHHCSSEEEEC-----CCCHHHHHHHHHHHHHTTTSCCCEEEEECCSCBCHHHHHHHHHHHHHHTGGGTCCCE
T ss_pred             HHHHHHHHHHCCCEEEEE-----ECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf             999999999789918998-----687889999999998566678886799559998899999999999995865443431


Q ss_pred             EEEECCCCCHHH
Q ss_conf             588628999999
Q gi|254780558|r  325 DLYLDDQVDRDK  336 (396)
Q Consensus       325 dvfLD~~~~~~~  336 (396)
                      ..+.+.......
T Consensus       106 ~~~~~~~~~~~~  117 (261)
T 2oq2_A          106 VYKPDGCESEAD  117 (261)
T ss_dssp             EECSTTCSSHHH
T ss_pred             EECCCHHHHHHH
T ss_conf             445755667999


No 64 
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42}
Probab=21.71  E-value=33  Score=13.30  Aligned_cols=21  Identities=10%  Similarity=0.074  Sum_probs=9.5

Q ss_pred             CCHHHHHHHHHHCCCCEEEEC
Q ss_conf             768999999998599299981
Q gi|254780558|r  207 NSLDRWMKEAKKKGQEAILQI  227 (396)
Q Consensus       207 ~~~~~~~~~Ar~~G~Evllhl  227 (396)
                      ++.....+.+++.|.+.-+++
T Consensus       672 ~~i~~~~~~a~~~G~~~~~~i  692 (1165)
T 2qf7_A          672 ENMRVSMDAIAEENKLCEAAI  692 (1165)
T ss_dssp             GGGHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEEE
T ss_conf             888888999984677688887


No 65 
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=21.43  E-value=33  Score=13.26  Aligned_cols=105  Identities=14%  Similarity=0.092  Sum_probs=52.5

Q ss_pred             HHHHHHHCCCCEEE--EECCC-------CCCCCCHHHHHHHHHHHHCCCC-E-EEECCCCCC------------------
Q ss_conf             99999855893598--00123-------0000498999999999850692-8-997497632------------------
Q gi|254780558|r  257 LRYSLRRGTGYFGV--MNYRG-------AMLLSNKESAEVIFKEFAKRGL-L-FFDDGSSPR------------------  307 (396)
Q Consensus       257 l~~~l~~~p~~vGv--nNhmG-------s~~t~~~~~m~~vl~~l~~rgL-~-flDs~Ts~~------------------  307 (396)
                      |...+.+.-+.+-|  .+||.       ++..++..+|+...+.|++-|. + ..=.||-.+                  
T Consensus       175 l~~~~~~~~~~i~V~r~~~i~~~p~l~~~k~~~~~~al~~~~~~L~~g~~~i~IfPEGtRsr~~~~~g~~~p~~~~~~~k  254 (367)
T 1iuq_A          175 LCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSV  254 (367)
T ss_dssp             TTHHHHHTSEEEECCCGGGTTSSGGGHHHHHHHHHHHHHHHHHHHHHCCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHH
T ss_pred             HHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             79999987896799648876667102245556679999999999964996999958877778776667657631013576


Q ss_pred             CHHHHHHHHHCCCEEEEEEEECCC---CCHHHHHHHHHHHHHHHHHCCEEEEEEECCH
Q ss_conf             267898987099469845886289---9999999999999999987194899980887
Q gi|254780558|r  308 NLTRVLAPKLNLPYMVADLYLDDQ---VDRDKIREKLKGLEEIARTTGQAIGVAVAFD  362 (396)
Q Consensus       308 Sva~~~A~~~gvp~~~~dvfLD~~---~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p  362 (396)
                      +-...+|.+.++|....-+.+...   +....+...+.+. +.-+..+..|.+|-+..
T Consensus       255 ~g~~~La~~s~~p~~IvPvai~~~d~~pp~~~~~~~ige~-r~~~~~~V~V~~G~pId  311 (367)
T 1iuq_A          255 DNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIGEK-RVIAFNGAGLSVAPEIS  311 (367)
T ss_dssp             HHHHHHHHTSSSCEEEEEEEEECGGGSCCC-----------CCCCCBCCEEEECCCCC
T ss_pred             HHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHCCCC-CCCCCCCEEEEECCCCC
T ss_conf             7999999715999679944551552458975320000201-45777853899749865


No 66 
>2fds_A Orotidine-monophosphate-decarboxylase; TIM barrel, structural genomics, structural genomics consortium, SGC, unknown function; 1.72A {Plasmodium berghei} SCOP: c.1.2.3 PDB: 2aqw_A
Probab=21.30  E-value=34  Score=13.25  Aligned_cols=132  Identities=10%  Similarity=0.111  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf             8999999998599299981766568987787855446789989999999999985-589359800123000049899999
Q gi|254780558|r  209 LDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRR-GTGYFGVMNYRGAMLLSNKESAEV  287 (396)
Q Consensus       209 ~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~-~p~~vGvnNhmGs~~t~~~~~m~~  287 (396)
                      +.+..+.++..|+.|++-+       +..|          =+.........+++. -..++=|+-+||...      |++
T Consensus       140 L~~ii~~l~~~g~~VflDl-------K~gD----------IpnTv~~ya~a~~~~l~aDavTVhp~~G~d~------l~~  196 (352)
T 2fds_A          140 LKNVFDYLNSMNIPTMLDM-------KIND----------IGNTVKNYRKFIFEYLKSDSCTINVYMGTSM------LKD  196 (352)
T ss_dssp             HHHHHHHHHHTTCCEEEEE-------EECC----------CHHHHHHHHHHHHTTSCCSEEEECCTTCSTT------HHH
T ss_pred             HHHHHHHHHHCCCCEEEEE-------CCCC----------HHHHHHHHHHHHHHHCCCCEEEECCCCCHHH------HHH
T ss_conf             9999999986799489840-------1058----------2689999999765307987899843666999------999


Q ss_pred             HHHHHH---CCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH---HCC-EEEEEEEC
Q ss_conf             999985---06928997497632267898987099469845886289999999999999999998---719-48999808
Q gi|254780558|r  288 IFKEFA---KRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIAR---TTG-QAIGVAVA  360 (396)
Q Consensus       288 vl~~l~---~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar---~~G-~AI~igh~  360 (396)
                      ++....   .+|+|.|-.-+.+.|.-.+  .         ....++..-...+.+++.+....+.   ..| .-+.+|-.
T Consensus       197 ~~~~~~~~~~kgv~vL~~tSn~~s~d~q--~---------~~~~~~~~~~~~v~~~~~~~a~~~~~~~~~g~~G~Vvgat  265 (352)
T 2fds_A          197 ICFDYEKNKYYSAYVLIKTTNKDSFIFQ--N---------ELSINDKQAYIVMAEETQKMATDLKIDQNNEFIGFVVGSN  265 (352)
T ss_dssp             HSEETTTTEECEEEEEEECSSGGGHHHH--T---------TCEETTEEHHHHHHHHHHHHHHHHTTGGGTCCEEEEECTT
T ss_pred             HHHHHHHCCCCCCEEEEECCCCHHHHHH--H---------HHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCC
T ss_conf             9999874346663477515850499997--4---------5023786113578899999999976641357776463579


Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             87889999999756
Q gi|254780558|r  361 FDESIEVISQWLQQ  374 (396)
Q Consensus       361 ~p~Ti~~L~~w~~~  374 (396)
                      +|+-+..|.+-.++
T Consensus       266 ~p~el~~iR~~~p~  279 (352)
T 2fds_A          266 AFEEMKIIRNKFPD  279 (352)
T ss_dssp             CHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHCCC
T ss_conf             88999999986899


No 67 
>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*
Probab=21.26  E-value=34  Score=13.24  Aligned_cols=132  Identities=14%  Similarity=0.226  Sum_probs=79.7

Q ss_pred             CCHHHHHHHHHHCCCCEE-EECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE--EEECCCCCCCCCHH
Q ss_conf             768999999998599299-981766568987787855446789989999999999985589359--80012300004989
Q gi|254780558|r  207 NSLDRWMKEAKKKGQEAI-LQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFG--VMNYRGAMLLSNKE  283 (396)
Q Consensus       207 ~~~~~~~~~Ar~~G~Evl-lhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vG--vnNhmGs~~t~~~~  283 (396)
                      ....+.++.+.++|+..+ +++                   +.+.++...+++...+.++.-+-  +--++|  ++....
T Consensus       143 ~~~~~~~~~~~~~G~~~iKiKv-------------------g~~~~~d~~~i~~ir~~~g~~~~l~~D~n~~--~~~~~~  201 (369)
T 2p8b_A          143 ENMAEEAASMIQKGYQSFKMKV-------------------GTNVKEDVKRIEAVRERVGNDIAIRVDVNQG--WKNSAN  201 (369)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEC-------------------CSCHHHHHHHHHHHHHHHCTTSEEEEECTTT--TBSHHH
T ss_pred             HHHHHHHHHHHHCCCCEEEEEC-------------------CCCHHHHHHHHHHHHHHHCCCCEEEEECCCC--CCCHHH
T ss_conf             9999999999876996899965-------------------9998999999999999729886698752546--776999


Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCH--HHHHHHHHCCCEEEEEEEECCC-CCHHHHH---------------------H
Q ss_conf             99999999850692899749763226--7898987099469845886289-9999999---------------------9
Q gi|254780558|r  284 SAEVIFKEFAKRGLLFFDDGSSPRNL--TRVLAPKLNLPYMVADLYLDDQ-VDRDKIR---------------------E  339 (396)
Q Consensus       284 ~m~~vl~~l~~rgL~flDs~Ts~~Sv--a~~~A~~~gvp~~~~dvfLD~~-~~~~~I~---------------------~  339 (396)
                      ++ .+++.+...|++|+..-..+...  -..+.+..++|.+-     |.. .+...+.                     .
T Consensus       202 a~-~~~~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~ipia~-----~E~~~~~~~~~~~i~~~~~di~~~d~~~~GGit  275 (369)
T 2p8b_A          202 TL-TALRSLGHLNIDWIEQPVIADDIDAMAHIRSKTDLPLMI-----DEGLKSSREMRQIIKLEAADKVNIKLMKCGGIY  275 (369)
T ss_dssp             HH-HHHHTSTTSCCSCEECCBCTTCHHHHHHHHHTCCSCEEE-----STTCCSHHHHHHHHHHTCCSEEEECHHHHTSHH
T ss_pred             HH-HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCC-----CCCEEEHHHHHHHHHCCCCCEEEEEEECCCCHH
T ss_conf             99-998752024760243263866899999987536876104-----674130354999986489886886344177788


Q ss_pred             HHHHHHHHHHHCCEEEEEEECCHHHH
Q ss_conf             99999999987194899980887889
Q gi|254780558|r  340 KLKGLEEIARTTGQAIGVAVAFDESI  365 (396)
Q Consensus       340 qL~~l~~~Ar~~G~AI~igh~~p~Ti  365 (396)
                      .+.+...+|+++|.-+.+++.+...|
T Consensus       276 ~~~~i~~~a~~~gi~~~~~~~~~~~i  301 (369)
T 2p8b_A          276 PAVKLAHQAEMAGIECQVGSMVESSV  301 (369)
T ss_dssp             HHHHHHHHHHHTTCEEEECCSSCCHH
T ss_pred             HHHHHHHHHHHCCCEEEECCCCCCHH
T ss_conf             99999999998699389889640489


No 68 
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1
Probab=21.25  E-value=27  Score=13.88  Aligned_cols=20  Identities=10%  Similarity=0.049  Sum_probs=13.2

Q ss_pred             CHHHHHHHHHHCCCCEEEEC
Q ss_conf             68999999998599299981
Q gi|254780558|r  208 SLDRWMKEAKKKGQEAILQI  227 (396)
Q Consensus       208 ~~~~~~~~Ar~~G~Evllhl  227 (396)
                      ..+.+++.+|+.|..+.|++
T Consensus        75 Gl~~l~~~~~~~G~~~Glw~   94 (362)
T 1uas_A           75 GIKALADYVHAKGLKLGIYS   94 (362)
T ss_dssp             CHHHHHHHHHHTTCEEEEEE
T ss_pred             CHHHHHHHHHHCCCCCCEEE
T ss_conf             38999999997597543673


No 69 
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=20.90  E-value=34  Score=13.19  Aligned_cols=120  Identities=12%  Similarity=0.102  Sum_probs=77.5

Q ss_pred             EEEEEECCCCCC--CHHHHHHHHHCCC-----------CCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
Q ss_conf             589997377877--1688999983793-----------508987089876899999999859929998176656898778
Q gi|254780558|r  172 RIAIVVSGLGIS--QTGTQRAINLLPA-----------NITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNE  238 (396)
Q Consensus       172 riAIVIddlG~~--~~~~~~ai~~LP~-----------~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~  238 (396)
                      ++-+-|+||-=.  ...-++++.++|.           .+++-+.|..-+..+..+..+..|++.-+.-....      .
T Consensus         5 ~~~l~i~GM~C~~Ca~~Ie~al~~~~GV~~v~vnl~~~~~~v~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~------~   78 (149)
T 2ew9_A            5 KCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVMEDYAG------S   78 (149)
T ss_dssp             EEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEECSCSCC------S
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCC------C
T ss_conf             9999979976889999999998649991378976048889998547889999999766433864203200124------4


Q ss_pred             CCCCCC-CCCCCHHHHHHHHHHHHHHCCCCEEE-EECCCCCC----CCCHHHHHHHHHHHHCCCC
Q ss_conf             785544-67899899999999999855893598-00123000----0498999999999850692
Q gi|254780558|r  239 DDSYTL-KVTQTVQQLLNRLRYSLRRGTGYFGV-MNYRGAML----LSNKESAEVIFKEFAKRGL  297 (396)
Q Consensus       239 pGp~~L-~~~~~~~~~~~~l~~~l~~~p~~vGv-nNhmGs~~----t~~~~~m~~vl~~l~~rgL  297 (396)
                      ..--.| ..+|+-..-..+++..|.+++|...+ .|+.-.+.    -.+.-..+.+.+.+.+-|+
T Consensus        79 ~~~~~l~v~gm~c~~c~~~ie~~L~~~~GV~~~~v~~~~~~~~V~~d~~~~~~~~i~~~I~~~Gy  143 (149)
T 2ew9_A           79 DGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGF  143 (149)
T ss_dssp             SSEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHHTC
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             40577741587743106889999857998289999889997999989898999999999996699


No 70 
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protein structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae}
Probab=20.85  E-value=34  Score=13.19  Aligned_cols=81  Identities=11%  Similarity=0.205  Sum_probs=44.4

Q ss_pred             HHHHHHHHHCC-CEEEEE-----EEECCCCCHHH-HHHHHHHHHHHHHHCCEEEEEEECC-HHHHHHHHHHHHHHH-HCC
Q ss_conf             67898987099-469845-----88628999999-9999999999998719489998088-788999999975688-769
Q gi|254780558|r  309 LTRVLAPKLNL-PYMVAD-----LYLDDQVDRDK-IREKLKGLEEIARTTGQAIGVAVAF-DESIEVISQWLQQEH-VRD  379 (396)
Q Consensus       309 va~~~A~~~gv-p~~~~d-----vfLD~~~~~~~-I~~qL~~l~~~Ar~~G~AI~igh~~-p~Ti~~L~~w~~~l~-~~g  379 (396)
                      .+..++.-+++ |...-+     ..++-.+.... +.+-++.+++.......-|+|.|.. ++..+.|.+.+.+.. ...
T Consensus       179 ~~a~ig~lL~ikPIl~~~~~G~l~~~~k~Rg~kka~~~l~~~i~~~~~~~~~~i~i~~~~~~e~a~~l~~~l~~~~~~~~  258 (285)
T 3lup_A          179 GSAIIGNLLSIKPVLHFNEEGKIVVYEKVRTEKKALKRLAEIVKEMTADGEYDIAIIHSRAQDKAEQLYNLLAKAGLKDD  258 (285)
T ss_dssp             HHHHHHHHTTSCCEEEECTTSCEEEEECCSSHHHHHHHHHHHHHHHGGGSCEEEEEEESSCHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHCCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCC
T ss_conf             68899850087799999889978875300458789999999999861699816999989999999999999986679998


Q ss_pred             CEEEEHHHHH
Q ss_conf             1899677743
Q gi|254780558|r  380 VSVVPLSCLA  389 (396)
Q Consensus       380 i~lVpvS~l~  389 (396)
                      +.+.+++.++
T Consensus       259 i~i~~~~pvi  268 (285)
T 3lup_A          259 LEIVSFGGVI  268 (285)
T ss_dssp             EEEEECCHHH
T ss_pred             EEEEEECCEE
T ss_conf             8999976299


No 71 
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Probab=20.63  E-value=35  Score=13.16  Aligned_cols=108  Identities=10%  Similarity=-0.004  Sum_probs=63.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEE
Q ss_conf             99899999999999855893598001230000498999999999850692899749763226789898709946984588
Q gi|254780558|r  248 QTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLY  327 (396)
Q Consensus       248 ~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvf  327 (396)
                      ++.+|+.+.+..+....| .+-|-.-+   --.|-.....+.+.+..+-...=|+.+..+..  .+.+..... +.+-+.
T Consensus       267 ~s~~eli~~y~~l~~~yP-IisIEDp~---~e~D~~gw~~lt~~lg~~~~iVGDDl~~Tn~~--rl~~gi~~~-~~nail  339 (431)
T 2fym_A          267 FTSEEFTHFLEELTKQYP-IVSIEDGL---DESDWDGFAYQTKVLGDKIQLVGDDLFVTNTK--ILKEGIEKG-IANSIL  339 (431)
T ss_dssp             ECHHHHHHHHHHHHHHSC-EEEEESCS---CTTCHHHHHHHHHHHTTTSEEEESTTTTTCHH--HHHHHHHTT-CCSEEE
T ss_pred             CCHHHHHHHHHHHHHCCC-EEEEECCC---CHHHHHHHHHHHHHHCCCEEEECCHHCCCCHH--HHHHHHHCC-CCCHHE
T ss_conf             389999999999985198-78984798---72456689999997388079988601024458--999876316-760222


Q ss_pred             ECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCHHH
Q ss_conf             6289999999999999999998719489998088788
Q gi|254780558|r  328 LDDQVDRDKIREKLKGLEEIARTTGQAIGVAVAFDES  364 (396)
Q Consensus       328 LD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p~T  364 (396)
                      |.-.|- .. .....++.++|+++|+.++|.|-.-+|
T Consensus       340 iK~NQi-GT-vset~ea~~la~~~g~~~ivShRsGET  374 (431)
T 2fym_A          340 IKFNQI-GS-LTETLAAIKMAKDAGYTAVISHRSGET  374 (431)
T ss_dssp             ECGGGT-CS-HHHHHHHHHHHHHTTCEEEEECCSSCC
T ss_pred             ECCCCC-EE-HHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             234332-23-999999999999879879997898886


No 72 
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum}
Probab=20.62  E-value=34  Score=13.23  Aligned_cols=174  Identities=13%  Similarity=0.093  Sum_probs=99.5

Q ss_pred             CCCHHHHHHHHHHCCCCEEEECC--C----------------------------CCCCCCCCCCCCCCCCC----CCCHH
Q ss_conf             87689999999985992999817--6----------------------------65689877878554467----89989
Q gi|254780558|r  206 GNSLDRWMKEAKKKGQEAILQIP--M----------------------------QAFDESYNEDDSYTLKV----TQTVQ  251 (396)
Q Consensus       206 ~~~~~~~~~~Ar~~G~EvllhlP--M----------------------------Ep~~~~~~~pGp~~L~~----~~~~~  251 (396)
                      .....+.++.|++.|-=.=|||=  |                            +..+.-. +-|-+.|+.    --..+
T Consensus       231 ~~Fl~eqI~dAK~~gvLfSLHLKATMMKVSDPIIFGHaV~vff~dvF~K~~~~l~~lGvnp-NnGlgdl~~Ki~~L~~~~  309 (738)
T 2b0t_A          231 DAFLLEQVARAKAEGILFSAHLKATMMKVSDPIIFGHVVRAYFADVFAQYGEQLLAAGLNG-ENGLAAILSGLESLDNGE  309 (738)
T ss_dssp             HHHHHHHHHHHHHHTCEEEECBCTTTSTTHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCSS-TTHHHHHHHHHTTSTTHH
T ss_pred             HHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHCCCHH
T ss_conf             9999999999986495798301233312468421799999999999999999999849884-668899999998455305


Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCC-----------------------CCC----------------CCCHHHHHHHHHHH
Q ss_conf             999999999985589359800123-----------------------000----------------04989999999998
Q gi|254780558|r  252 QLLNRLRYSLRRGTGYFGVMNYRG-----------------------AML----------------LSNKESAEVIFKEF  292 (396)
Q Consensus       252 ~~~~~l~~~l~~~p~~vGvnNhmG-----------------------s~~----------------t~~~~~m~~vl~~l  292 (396)
                      +|+..+...+..-|...-||..-|                       ++.                .+-...-+.+++.|
T Consensus       310 ~I~adi~~~~~~~P~lAMVdSdkGITNLHVPSDVIIDASMPAmIR~~GkmW~~dG~~~DtkavIPD~sYA~iYq~~I~~c  389 (738)
T 2b0t_A          310 EIKAAFEKGLEDGPDLAMVNSARGITNLHVPSDVIVDASMPAMIRTSGHMWNKDDQEQDTLAIIPDSSYAGVYQTVIEDC  389 (738)
T ss_dssp             HHHHHHHHHHHHSCCBCEEEGGGTEETTTCTTTSBHHHHHHHHHHTTTEEECTTSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCHHHHHHCCCEECCCCCCCCCEEECCCCHHHHHHHHHHHHH
T ss_conf             69999999986199747761577843566886556726758999830623899988154338546531378999999999


Q ss_pred             HCCCCEEEECCCCCCCHH-----HHHHHHHC-------CCEEEEEEEECCCC-------------------CHHHHHHHH
Q ss_conf             506928997497632267-----89898709-------94698458862899-------------------999999999
Q gi|254780558|r  293 AKRGLLFFDDGSSPRNLT-----RVLAPKLN-------LPYMVADLYLDDQV-------------------DRDKIREKL  341 (396)
Q Consensus       293 ~~rgL~flDs~Ts~~Sva-----~~~A~~~g-------vp~~~~dvfLD~~~-------------------~~~~I~~qL  341 (396)
                      +++|-|  | -|+-.||.     .+-|.++|       +|....-.++|..-                   ....|+.-.
T Consensus       390 k~~Gaf--D-PttmGsV~NVGLMAqKAEEYGSHdkTFe~~~~G~v~vv~~~G~vl~eh~Ve~GDIwR~cq~kd~pi~dWv  466 (738)
T 2b0t_A          390 RKNGAF--D-PTTMGTVPNVGLMAQKAEEYGSHDKTFRIEADGVVQVVSSNGDVLIEHDVEANDIWRACQVKDAPIQDWV  466 (738)
T ss_dssp             HHHCSC--C-TTTCCCCCEEECCTTTCGGGGCGGGEEECCSSEEEEEECTTSCEEEEEEECTTCEEEEEEECHHHHHHHH
T ss_pred             HHCCCC--C-CHHCCCCCCHHHHCCCHHHHCCCCCCEECCCCCEEEEEECCCCEEEEEEECCCCHHHHHHCCCCHHHHHH
T ss_conf             974998--9-4011577761653027586388886354489966999979998999987647651667533560699999


Q ss_pred             HHHHHHHHHCCE-EEEEE-ECCH---HHHHHHHHHHHHHHHCCCEEE
Q ss_conf             999999987194-89998-0887---889999999756887691899
Q gi|254780558|r  342 KGLEEIARTTGQ-AIGVA-VAFD---ESIEVISQWLQQEHVRDVSVV  383 (396)
Q Consensus       342 ~~l~~~Ar~~G~-AI~ig-h~~p---~Ti~~L~~w~~~l~~~gi~lV  383 (396)
                      +-+..+||..|. ||--- .-|.   +-|.....++++....|+.+-
T Consensus       467 kLav~Rar~t~~pavFWLd~~RaHd~~li~kv~~yL~~~dt~gl~i~  513 (738)
T 2b0t_A          467 KLAVTRSRLSGMPAVFWLDPERAHDRNLASLVEKYLADHDTEGLDIQ  513 (738)
T ss_dssp             HHHHHHHHHHCCCEEEECCTTCHHHHHHHHHHHHHHTTSCCTTCCEE
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             99999988619966896078886319999999999986488898527


No 73 
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=20.46  E-value=35  Score=13.14  Aligned_cols=96  Identities=15%  Similarity=0.307  Sum_probs=66.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCC---EEEECCCCCCCHHHHHHHHHCCCEEEEEE--EEC--CCCCHHHHHHHHHHHHHH
Q ss_conf             30000498999999999850692---89974976322678989870994698458--862--899999999999999999
Q gi|254780558|r  275 GAMLLSNKESAEVIFKEFAKRGL---LFFDDGSSPRNLTRVLAPKLNLPYMVADL--YLD--DQVDRDKIREKLKGLEEI  347 (396)
Q Consensus       275 Gs~~t~~~~~m~~vl~~l~~rgL---~flDs~Ts~~Sva~~~A~~~gvp~~~~dv--fLD--~~~~~~~I~~qL~~l~~~  347 (396)
                      |=-+..+...++.+.+.|++.|.   +|+|.    .-..-+.|++.|....+-+-  |-+  +..+......++.++...
T Consensus       106 Gld~~~~~~~L~~~i~~lk~~girvSLFiDP----d~~qi~~a~~~Gad~IElhTG~YA~a~~~~~~~~el~~i~~aa~~  181 (243)
T 1m5w_A          106 GLDVAGQRDKMRDACKRLADAGIQVSLFIDA----DEEQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQELARIAKAATF  181 (243)
T ss_dssp             CCCSGGGHHHHHHHHHHHHHTTCEEEEEECS----CHHHHHHHHHTTCSEEEEECHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred             CEEECCCHHHHHHHHHHHHHCCCCEEEEECC----CHHHHHHHHHCCCCEEEEECCHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf             5632265889999999998759816998368----889999998719995874010000224310257899999999999


Q ss_pred             HHHCCEEEEEEECCH-HHHHHHHHHHHHH
Q ss_conf             987194899980887-8899999997568
Q gi|254780558|r  348 ARTTGQAIGVAVAFD-ESIEVISQWLQQE  375 (396)
Q Consensus       348 Ar~~G~AI~igh~~p-~Ti~~L~~w~~~l  375 (396)
                      |++.|.-|--||-.. +.+..|.+ ++.+
T Consensus       182 A~~lGL~VnAGHgLn~~Nl~~i~~-i~~i  209 (243)
T 1m5w_A          182 AASLGLKVNAGHGLTYHNVKAIAA-IPEM  209 (243)
T ss_dssp             HHHTTCEEEEESSCCTTTHHHHHT-CTTE
T ss_pred             HHHCCCEEECCCCCCHHHHHHHHC-CCCC
T ss_conf             997599563699988766899844-8997


No 74 
>3pe5_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; 2.38A {Clostridium leptum}
Probab=20.01  E-value=18  Score=14.97  Aligned_cols=20  Identities=0%  Similarity=-0.006  Sum_probs=11.8

Q ss_pred             CCCCCCHHHHHHHHHHHHCC
Q ss_conf             00004989999999998506
Q gi|254780558|r  276 AMLLSNKESAEVIFKEFAKR  295 (396)
Q Consensus       276 s~~t~~~~~m~~vl~~l~~r  295 (396)
                      +|..-....|+.+++.++..
T Consensus       259 ~R~~RQq~vl~al~~k~~~~  278 (403)
T 3pe5_A          259 GRTQRQRDFMLQVLNKVKGT  278 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHCC
T ss_conf             59999999999999987485


Done!