Query gi|254780558|ref|YP_003064971.1| hypothetical protein CLIBASIA_02225 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 396 No_of_seqs 176 out of 400 Neff 6.1 Searched_HMMs 23785 Date Tue May 31 19:46:26 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780558.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2qv5_A AGR_C_5032P, uncharacte 100.0 0 0 555.5 27.1 245 149-393 2-252 (261) 2 2nly_A BH1492 protein, diverge 100.0 0 0 311.2 23.5 222 170-392 3-228 (245) 3 2vyo_A ECU11_0510, chitooligos 98.9 7.4E-09 3.1E-13 74.2 9.5 188 169-392 24-219 (254) 4 2j13_A Polysaccharide deacetyl 98.5 1.8E-06 7.6E-11 59.1 10.9 183 171-394 55-247 (247) 5 2c1i_A Peptidoglycan glcnac de 98.4 0.00012 5.1E-09 47.6 18.3 176 170-394 235-421 (431) 6 2iw0_A Chitin deacetylase; hyd 98.4 4.1E-05 1.7E-09 50.6 15.6 184 171-392 42-241 (254) 7 2cc0_A Acetyl-xylan esterase; 98.3 8.4E-05 3.5E-09 48.6 15.5 171 170-390 4-187 (195) 8 1ny1_A Probable polysaccharide 98.2 2.7E-05 1.1E-09 51.7 11.2 179 171-390 43-231 (240) 9 2w3z_A Putative deacetylase; P 98.0 2.5E-05 1E-09 52.0 7.7 189 172-385 108-310 (311) 10 2c71_A Glycoside hydrolase, fa 98.0 3.6E-05 1.5E-09 50.9 8.4 173 171-392 5-192 (216) 11 1v6t_A Hypothetical UPF0271 pr 97.0 0.017 7.1E-07 34.1 16.2 196 178-390 7-255 (255) 12 3cl6_A PUUE allantoinase; URIC 96.8 0.0052 2.2E-07 37.3 7.7 188 186-390 85-295 (308) 13 2i5i_A UPF0249 protein EF_3048 96.3 0.055 2.3E-06 30.9 17.8 213 172-388 6-261 (263) 14 2dfa_A Hypothetical UPF0271 pr 95.3 0.15 6.2E-06 28.1 10.8 191 178-384 7-249 (250) 15 1xw8_A UPF0271 protein YBGL; N 95.1 0.063 2.6E-06 30.5 6.6 194 178-386 7-246 (252) 16 3hft_A WBMS, polysaccharide de 89.0 1.1 4.5E-05 22.7 7.0 109 172-302 38-149 (257) 17 2hk0_A D-psicose 3-epimerase; 86.7 1.5 6.3E-05 21.8 11.0 149 206-384 35-202 (309) 18 2r6a_A DNAB helicase, replicat 84.9 1.8 7.6E-05 21.3 9.8 127 214-361 226-364 (454) 19 2q6t_A DNAB replication FORK h 78.5 3.1 0.00013 19.8 10.3 125 214-363 223-365 (444) 20 1nlf_A Regulatory protein REPA 77.5 3.3 0.00014 19.6 10.5 100 244-363 74-183 (279) 21 2x5e_A UPF0271 protein PA4511; 70.1 5 0.00021 18.5 12.9 145 176-331 11-178 (252) 22 2e67_A Hypothetical protein TT 67.1 5.8 0.00024 18.1 10.5 172 172-361 14-217 (264) 23 2zvr_A Uncharacterized protein 63.4 6.8 0.00028 17.7 6.9 81 209-302 115-203 (290) 24 3iix_A Biotin synthetase, puta 61.6 7.3 0.00031 17.4 9.9 164 218-388 46-230 (348) 25 1byr_A Protein (endonuclease); 59.6 7.9 0.00033 17.2 7.5 82 194-297 1-82 (155) 26 3bij_A Uncharacterized protein 59.3 8 0.00034 17.2 5.0 69 172-265 4-72 (285) 27 2pju_A Propionate catabolism o 55.1 9.4 0.00039 16.8 7.3 96 243-350 85-197 (225) 28 1fob_A Beta-1,4-galactanase; B 54.6 9.5 0.0004 16.7 5.6 69 207-278 60-141 (334) 29 2q5c_A NTRC family transcripti 45.5 13 0.00056 15.8 6.7 99 243-352 73-188 (196) 30 2qul_A D-tagatose 3-epimerase; 45.4 13 0.00056 15.8 11.8 22 337-358 131-152 (290) 31 1kpg_A CFA synthase;, cyclopro 45.0 9.7 0.00041 16.7 2.2 168 175-378 68-246 (287) 32 1nxi_A Conserved hypothetical 44.4 14 0.00058 15.7 3.2 94 250-353 18-113 (132) 33 2ohh_A Type A flavoprotein FPR 43.9 14 0.00059 15.7 7.4 162 203-384 204-375 (404) 34 2k6x_A Sigma-A, RNA polymerase 43.4 4.2 0.00018 19.0 0.1 52 335-386 5-63 (72) 35 3igs_A N-acetylmannosamine-6-p 41.9 15 0.00063 15.5 8.1 132 190-349 96-231 (232) 36 2dt8_A DEGV family protein; fa 41.3 15 0.00065 15.4 5.0 57 330-389 200-264 (280) 37 1jxh_A Phosphomethylpyrimidine 40.4 16 0.00067 15.3 3.9 11 260-270 187-197 (288) 38 1q1g_A Uridine phosphorylase p 38.9 14 0.00059 15.7 2.2 77 250-331 133-211 (276) 39 1qgo_A CBIK protein, anaerobic 37.0 18 0.00075 15.0 15.6 186 172-385 2-234 (264) 40 2b94_A Purine nucleoside phosp 33.9 20 0.00084 14.7 2.9 78 249-331 153-232 (267) 41 3obe_A Sugar phosphate isomera 32.2 21 0.0009 14.5 9.3 47 330-380 255-303 (305) 42 2q02_A Putative cytoplasmic pr 31.7 22 0.00092 14.4 11.0 12 212-223 90-101 (272) 43 1q57_A DNA primase/helicase; d 31.7 22 0.00092 14.4 7.5 111 245-362 278-405 (503) 44 1ccw_A Protein (glutamate muta 31.4 4.2 0.00018 19.0 -1.5 106 208-343 19-132 (137) 45 2vf7_A UVRA2, excinuclease ABC 30.6 23 0.00096 14.3 3.3 95 279-375 701-805 (842) 46 3dx5_A Uncharacterized protein 30.2 23 0.00097 14.3 6.9 48 329-383 231-278 (286) 47 2v5j_A 2,4-dihydroxyhept-2-ENE 29.7 24 0.00099 14.2 8.0 87 279-387 173-259 (287) 48 2vws_A YFAU, 2-keto-3-deoxy su 29.5 24 0.001 14.2 7.3 87 279-387 152-238 (267) 49 1zym_A Enzyme I; phosphotransf 28.3 25 0.001 14.1 3.4 50 275-324 155-204 (258) 50 3egl_A DEGV family protein; al 26.4 27 0.0011 13.9 7.0 79 311-389 160-247 (277) 51 3hem_A Cyclopropane-fatty-acyl 25.9 27 0.0012 13.8 3.6 170 174-378 75-261 (302) 52 1ysq_A HTH-type transcriptiona 24.9 29 0.0012 13.7 2.1 78 242-326 71-150 (193) 53 3kws_A Putative sugar isomeras 24.9 29 0.0012 13.7 13.8 83 209-301 106-198 (287) 54 2i1a_A DNA damage-inducible pr 24.6 20 0.00085 14.6 1.0 25 296-320 38-62 (148) 55 2g0w_A LMO2234 protein; putati 24.4 29 0.0012 13.6 9.3 78 208-302 106-184 (296) 56 3bh0_A DNAB-like replicative h 24.4 29 0.0012 13.6 11.0 152 169-362 66-232 (315) 57 3on5_A BH1974 protein; structu 24.0 30 0.0013 13.6 6.9 79 196-277 198-297 (362) 58 1izc_A Macrophomate synthase i 23.7 30 0.0013 13.5 5.4 143 207-386 104-274 (339) 59 3igz_B Cofactor-independent ph 23.6 30 0.0013 13.5 10.2 33 242-274 390-422 (561) 60 1dxe_A 2-dehydro-3-deoxy-galac 23.2 31 0.0013 13.5 6.6 87 279-387 152-238 (256) 61 3gk0_A PNP synthase, pyridoxin 23.1 31 0.0013 13.5 7.0 181 171-376 32-238 (278) 62 3ddo_A Urdpase, upase, uridine 21.8 33 0.0014 13.3 4.4 83 249-335 132-227 (253) 63 2oq2_A Phosphoadenosine phosph 21.7 33 0.0014 13.3 3.7 78 254-336 31-117 (261) 64 2qf7_A Pyruvate carboxylase pr 21.7 33 0.0014 13.3 6.6 21 207-227 672-692 (1165) 65 1iuq_A Glycerol-3-phosphate ac 21.4 33 0.0014 13.3 4.0 105 257-362 175-311 (367) 66 2fds_A Orotidine-monophosphate 21.3 34 0.0014 13.2 10.8 132 209-374 140-279 (352) 67 2p8b_A Mandelate racemase/muco 21.3 34 0.0014 13.2 10.0 132 207-365 143-301 (369) 68 1uas_A Alpha-galactosidase; TI 21.3 27 0.0011 13.9 1.1 20 208-227 75-94 (362) 69 2ew9_A Copper-transporting ATP 20.9 34 0.0014 13.2 9.0 120 172-297 5-143 (149) 70 3lup_A DEGV family protein; PS 20.9 34 0.0014 13.2 5.1 81 309-389 179-268 (285) 71 2fym_A Enolase; RNA degradosom 20.6 35 0.0015 13.2 11.9 108 248-364 267-374 (431) 72 2b0t_A NADP isocitrate dehydro 20.6 34 0.0014 13.2 1.5 174 206-383 231-513 (738) 73 1m5w_A Pyridoxal phosphate bio 20.5 35 0.0015 13.1 7.3 96 275-375 106-209 (243) 74 3pe5_A Uncharacterized protein 20.0 18 0.00075 15.0 0.0 20 276-295 259-278 (403) No 1 >2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein structure initiative; 1.90A {Agrobacterium tumefaciens str} Probab=100.00 E-value=0 Score=555.52 Aligned_cols=245 Identities=41% Similarity=0.645 Sum_probs=235.5 Q ss_pred CCCCCCCCCCCCCCCCCCCC------CCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCC Q ss_conf 65646743455332112346------686589997377877168899998379350898708987689999999985992 Q gi|254780558|r 149 KVGREDTEVPAMDKNFCSNA------SGARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQE 222 (396) Q Consensus 149 ~~g~~P~~~~~~~~~~~~~a------~~~riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~E 222 (396) ..|++|.+..++.+|+..|| .+|+|||||||+|++...+.++|.+||++|||||+||.+++++|++.||++||| T Consensus 2 ~~g~lP~~~~~~~~P~~~~a~P~~~~~~p~iAIVIDD~G~~~~~~~~ai~~Lp~pvT~Ai~P~~~~~~~~a~~ar~~G~E 81 (261) T 2qv5_A 2 SLGQLPVVGADGLRPMEQYARPWSGARGTRVAIVVGGLGLSQTGSQKAIRDLPPEVTLGFAASGNSLQRWMQDARREGHE 81 (261) T ss_dssp -CCSCCCCCTTCCCHHHHTCCCCCCCSSEEEEEEEEEETSCHHHHHHHHHHSCTTSEEEEETTCSSHHHHHHHHHHHTCC T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCE T ss_conf 87889988888999466426889988886699999579999378999998589973799878997779999999977987 Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 99981766568987787855446789989999999999985589359800123000049899999999985069289974 Q gi|254780558|r 223 AILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDD 302 (396) Q Consensus 223 vllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs 302 (396) |||||||||++|+..||||++|+++|++++|+++|+|+|+++|+|+||||||||+||+|+..|++||++|++|||||||| T Consensus 82 vllhlPMep~~~~~~~~gp~~L~~~~~~~~i~~~l~~~l~~vP~avGvnNhmGS~~t~~~~~m~~v~~~l~~~gL~fvDS 161 (261) T 2qv5_A 82 ILLQIPLEPFGYPGTNPGPDTLLAGDPAKVNIDRLHRSMAKITNYTGVMNYLGGRFLAEQSALEPVMRDIGKRGLLFLDD 161 (261) T ss_dssp EEEEEEECCTTTTTSCCCTTCBCTTSCHHHHHHHHHHHHTTCCCCSEEEEEECTTGGGCHHHHHHHHHHHHHTTCEEEEC T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCHHHHHHHHHHHHHCCCEEEEC T ss_conf 99976667668887888855456678899999999999986986299834655201269899999999998779889946 Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEE Q ss_conf 97632267898987099469845886289999999999999999998719489998088788999999975688769189 Q gi|254780558|r 303 GSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVSV 382 (396) Q Consensus 303 ~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p~Ti~~L~~w~~~l~~~gi~l 382 (396) +|+++|++.++|++.|+|+++||+||||++++++|++||++++++||++|+||+|||+||+||++|++|+++++++||+| T Consensus 162 ~T~~~Sva~~~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Ighp~p~Tl~~L~~w~~~l~~~gi~l 241 (261) T 2qv5_A 162 GSSAQSLSGGIAKAISAPQGFADVLLDGEVTEASILRKLDDLERIARRNGQAIGVASAFDESIAAISKWSREAGGRGIEI 241 (261) T ss_dssp SCCTTCCHHHHHHHHTCCEEECSEETTSSCSHHHHHHHHHHHHHHHHHHSEEEEEEECCHHHHHHHHHHHHHGGGGTEEE T ss_pred CCCCCCHHHHHHHHCCCCEEEECEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCEEE T ss_conf 99877489999997599865402425899999999999999999998759589997899899999999716777688699 Q ss_pred EEHHHHHHCCC Q ss_conf 96777430647 Q gi|254780558|r 383 VPLSCLAKLSS 393 (396) Q Consensus 383 VpvS~l~~~~~ 393 (396) ||+|+|++..+ T Consensus 242 VpvS~Ll~~~~ 252 (261) T 2qv5_A 242 VGVSALVSGQA 252 (261) T ss_dssp CCHHHHC---- T ss_pred EEHHHHHHHCC T ss_conf 98899742003 No 2 >2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical protein; PFAM04748, structural genomics, PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7 Probab=100.00 E-value=0 Score=311.23 Aligned_cols=222 Identities=20% Similarity=0.314 Sum_probs=212.2 Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 86589997377877168899998379350898708987689999999985992999817665689877878554467899 Q gi|254780558|r 170 GARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQT 249 (396) Q Consensus 170 ~~riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~ 249 (396) ..+|||+|||+|++...+.+ |.+++.++||+|+|+.++..++++++++.||||++|+||+|..+..+++++++|..+++ T Consensus 3 ~K~vALt~DD~G~~~~~~~~-ll~~~v~aTffv~~~~~~~~~~~~~~~~~Ghei~~H~~~h~~~~~~~~~~~~~l~~~~~ 81 (245) T 2nly_A 3 MKRAAIIIDDFGGDVKGVDD-FLTGEIPVTVAVMPFLEHSTKQAEIAQAAGLEVIVHMPLEPKKGKISWLGPSGITSNLS 81 (245) T ss_dssp CEEEEEEEEEESSCCTTHHH-HHTCSSCEEEEECSSSTTHHHHHHHHHHTTCEEEEEEEECCC--------CCCBCTTCC T ss_pred CCEEEEEEECCCCCHHHHHH-HHCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC T ss_conf 77899999469999578999-97389987999868985668999999986996788646565545556666554653159 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEEC Q ss_conf 89999999999985589359800123000049899999999985069289974976322678989870994698458862 Q gi|254780558|r 250 VQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLD 329 (396) Q Consensus 250 ~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD 329 (396) .+||++.+.++++++++++|+||||||++|++...|+.+++.+++++++|.|+.+..++.+..++++.|+++..+++|+| T Consensus 82 ~~ei~~~l~~~~~~i~~a~g~~~~~~s~~t~~~~~~~~~~~~~~~~~~~frp~~~~~~~~~~~~a~~~G~~~~~~~v~~~ 161 (245) T 2nly_A 82 VGEVKSRVRKAFDDIPYAVGLNNHMGSKIVENEKIMRAILEVVKEKNAFIIDSGTSPHSLIPQLAEELEVPYATRSIFLD 161 (245) T ss_dssp HHHHHHHHHHHHHHSTTCCEEEEEECTTGGGCHHHHHHHHHHHHHTTCEEEECCCCSSCSHHHHHHHTTCCEEECCEESC T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHCCCEEEEEEEECC T ss_conf 99999999998764634415424654433267788999999747587066079886247899999987971899997337 Q ss_pred C-CCCHHHHHHHHHHHHHHHHHCCEEEEEEE---CCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCC Q ss_conf 8-99999999999999999987194899980---887889999999756887691899677743064 Q gi|254780558|r 330 D-QVDRDKIREKLKGLEEIARTTGQAIGVAV---AFDESIEVISQWLQQEHVRDVSVVPLSCLAKLS 392 (396) Q Consensus 330 ~-~~~~~~I~~qL~~l~~~Ar~~G~AI~igh---~~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~ 392 (396) + ..+...+.+++.++...|+..|.+|.|+| +++.|+++|..|++.|+++|++||+||+|+... T Consensus 162 d~~~~~~~~~~~~~~~~~~a~~~g~~IvL~H~~~~~~~T~eaL~~~i~~L~~~Gy~fVtlsell~~p 228 (245) T 2nly_A 162 NTHSSRKEVIKNMRKLAKKAKQGSEPIGIGHVGVRGDETYAGIRSMLDEFQAESIQLVPVSQLLPSP 228 (245) T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTSCCEEEEECSTTHHHHHHHHGGGHHHHHHTTEEECCGGGGCC-- T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHCCH T ss_conf 5544427899999999997441797289974799956799999999999997991999879940660 No 3 >2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi} Probab=98.91 E-value=7.4e-09 Score=74.21 Aligned_cols=188 Identities=13% Similarity=0.100 Sum_probs=118.2 Q ss_pred CCCEEEEEECCCCCCCHHHH---HHHHHCCCCCEEEEEC---CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC Q ss_conf 68658999737787716889---9998379350898708---98768999999998599299981766568987787855 Q gi|254780558|r 169 SGARIAIVVSGLGISQTGTQ---RAINLLPANITLAFAS---NGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSY 242 (396) Q Consensus 169 ~~~riAIVIddlG~~~~~~~---~ai~~LP~~vT~A~~P---~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~ 242 (396) ....|||-+|| |.+...|. +.+.+--.+.||-|.- ...+..+.+++..+.||||-.|- |.. +. T Consensus 24 ~~~~VaLTFDD-Gp~~~~t~~iLd~L~~~~vkATFF~~~g~~~~~~~~~~~k~~~~~GHeIgnHt------~~H----~~ 92 (254) T 2vyo_A 24 NSGMIAINFVD-GPVRGVTDRILNTLDELGVKATFSFTVNQKAVGNVGQLYRRAVEEGHNVALRV------DPS----MD 92 (254) T ss_dssp SSSEEEEEEES-CCCTTHHHHHHHHHHHHTCCCEEEECCSSCCCGGGTHHHHHHHHTTCEEEEEC------CGG----GT T ss_pred CCCEEEEEEEC-CCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHCCHHHHHHHHHCCCEEEECC------CCC----CC T ss_conf 89989998607-99834189999999983998899997681565505999999998699799578------877----77 Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCE Q ss_conf 446789989999999999985589359800123000-0498999999999850692899749763226789898709946 Q gi|254780558|r 243 TLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAML-LSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPY 321 (396) Q Consensus 243 ~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~-t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~ 321 (396) --+..++.+++++.+......+-...|....+- |+ ..+......+++.+++.|+..++.-..+. T Consensus 93 ~~~~~~s~~~~~~ei~~~~~~i~~~~G~~~~~f-R~Py~~g~~~~~~~~~l~~~g~~~v~w~v~~~-------------- 157 (254) T 2vyo_A 93 EGYQCLSQDALENNVDREIDTIDGLSGTEIRYA-AVPICNGQVNSEMYNILTERGVLPVGYTFCPY-------------- 157 (254) T ss_dssp TCGGGSCHHHHHHHHHHHHHHHHHHHTSCCCEE-ECCCBTTEECHHHHHHHHTTTCEECCCSBCGG-------------- T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE-ECCCCCCCCCHHHHHHHHHCCCEEEEEECCCH-------------- T ss_conf 322449999999999999999999619988778-38875788898999999977998999620521-------------- Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCC Q ss_conf 984588628999999999999999999871948999808-87889999999756887691899677743064 Q gi|254780558|r 322 MVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVISQWLQQEHVRDVSVVPLSCLAKLS 392 (396) Q Consensus 322 ~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~ 392 (396) | -.+.....+...+.. .+.++..|.+.|. ++.|+++|...++.++++|+++|.++++++-. T Consensus 158 -------D-~~~~~~~~~~~~~~~--~~~~~g~IiL~Hd~~~~t~~aL~~iI~~lk~~Gy~fvTl~ell~~~ 219 (254) T 2vyo_A 158 -------D-YDDPVGEFESMIEGS--DPKHHSFIILMHDGQEADTSRLENMVKIGKDKGYRFVNMDECLQGY 219 (254) T ss_dssp -------G-SSSHHHHHHHHHHTS--CTTTCCEEEEEEGGGGSSCHHHHHHHHHHHHHTCEECCHHHHTTTC T ss_pred -------H-HCCCCCHHHHHHHHH--HCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCC T ss_conf -------2-027541799999997--2579997999768967589999999999998899998889975466 No 4 >2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3 Probab=98.48 E-value=1.8e-06 Score=59.15 Aligned_cols=183 Identities=13% Similarity=0.052 Sum_probs=110.6 Q ss_pred CEEEEEECCCCCCCHHH---HHHHHHCCCCCEEEEEC-CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 65899973778771688---99998379350898708-987689999999985992999817665689877878554467 Q gi|254780558|r 171 ARIAIVVSGLGISQTGT---QRAINLLPANITLAFAS-NGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKV 246 (396) Q Consensus 171 ~riAIVIddlG~~~~~~---~~ai~~LP~~vT~A~~P-~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~ 246 (396) -.|+|-+|| |+...-| .+.+.+.-.+.||-+.- +.....+.+++..+.||||--|- |...+ +. T Consensus 55 k~V~LTFDD-G~~~~~t~~iLd~Lk~~~vkATFFv~g~~i~~~p~~~~~~~~~GheIgnHt------~~H~~------l~ 121 (247) T 2j13_A 55 KDIYLTFDN-GYENGYTGKILDVLKEKKVPATFFVTGHYIKTQKDLLLRMKDEGHIIGNHS------WSHPD------FT 121 (247) T ss_dssp CEEEEEEEE-SSCCSCHHHHHHHHHHHTCCEEEEECHHHHHHCHHHHHHHHHTTCEEEECC------SSCCC------GG T ss_pred CEEEEEEEC-CCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHCHHHHHHHHHCCCEEEECC------CCCCC------CC T ss_conf 989998748-998564999999999869839999866245669999999985798897221------45787------43 Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEE-----ECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCE Q ss_conf 8998999999999998558935980-----01230000498999999999850692899749763226789898709946 Q gi|254780558|r 247 TQTVQQLLNRLRYSLRRGTGYFGVM-----NYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPY 321 (396) Q Consensus 247 ~~~~~~~~~~l~~~l~~~p~~vGvn-----NhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~ 321 (396) .++.+++++-|..+...+-...|.. -.-++.+ ++. +++.+++.|+-.+.- |+ T Consensus 122 ~ls~~~~~~ei~~~~~~l~~~~G~~~~~~~rpP~G~~--~~~----~~~~~~~~Gy~~v~w-----s~------------ 178 (247) T 2j13_A 122 AVNDEKLREELTSVTEEIKKVTGQKEVKYVRPPRGVF--SER----TLALTKEMGYYNVFW-----SL------------ 178 (247) T ss_dssp GSCHHHHHHHHHHHHHHHHHHHCCSCCCEECCGGGEE--CHH----HHHHHHHTTCEEECC-----SE------------ T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CHH----HHHHHHHCCCEEEEC-----CC------------ T ss_conf 2328999999999999999986899888777887776--989----999999869978747-----62------------ Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCCC Q ss_conf 984588628999999999999999999871948999808-8788999999975688769189967774306478 Q gi|254780558|r 322 MVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVISQWLQQEHVRDVSVVPLSCLAKLSSP 394 (396) Q Consensus 322 ~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~~~ 394 (396) ...|--.|...+...|.+++.+ ..+.|. |.+.|. .+.|+++|...++.++++|+++|++++|++-.-| T Consensus 179 d~~Dw~~~~~~~~~~~~~~v~~----~~~~G~-IiLlHd~~~~t~~aL~~iI~~lk~~Gy~fvtl~ell~~~~p 247 (247) T 2j13_A 179 AFLDWKVDEQRGWQYAHNNVMT----MIHPGS-ILLLHAISKDNAEALAKIIDDLREKGYHFKSLDDLVKSNQP 247 (247) T ss_dssp ECCCC----------------------CCTTB-EEEECCCSTTHHHHHHHHHHHHHHTTCEEECHHHHHHTC-- T ss_pred CCCCCCCCCCHHHHHHHHHHHH----CCCCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHCCCCC T ss_conf 4687876553579999999994----379996-89971899479999999999999789999887996257998 No 5 >2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase, peptidoglycan deacetylase, metalloenzyme, D275N mutant, hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae} SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A Probab=98.38 E-value=0.00012 Score=47.63 Aligned_cols=176 Identities=11% Similarity=0.076 Sum_probs=107.4 Q ss_pred CCEEEEEECCCCCCCHHH---HHHHHHCCCCCEEEEECC-CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 865899973778771688---999983793508987089-8768999999998599299981766568987787855446 Q gi|254780558|r 170 GARIAIVVSGLGISQTGT---QRAINLLPANITLAFASN-GNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLK 245 (396) Q Consensus 170 ~~riAIVIddlG~~~~~~---~~ai~~LP~~vT~A~~P~-~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~ 245 (396) .-.||+-+||-. +...| .+.+.+--.+.||=+.-. ...-.+.+++..+.||||-.|- |. +.-+ T Consensus 235 ~K~VALTFDDGP-~~~~t~~iLdiL~k~~vkATFFv~G~~~~~~p~~vr~i~~~GHeIGnHt------~s------H~~l 301 (431) T 2c1i_A 235 QKVVALTFNDGP-NPATTPQVLETLAKYDIKATFFVLGKNVSGNEDLVKRIKSEGHVVGNHS------WS------HPIL 301 (431) T ss_dssp CCEEEEEEESCC-CTTTHHHHHHHHHHTTCCCEEEECGGGTTTCHHHHHHHHHTTCEEEECC------SS------CCCG T ss_pred CCEEEEEECCCC-CCCCHHHHHHHHHHCCCCEEEEECHHHHHHCHHHHHHHHHCCCEEECCC------CC------CCCC T ss_conf 827999873899-8474999999999739929999737855379999999997799998588------88------7561 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEE-CC---CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCE Q ss_conf 789989999999999985589359800-12---30000498999999999850692899749763226789898709946 Q gi|254780558|r 246 VTQTVQQLLNRLRYSLRRGTGYFGVMN-YR---GAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPY 321 (396) Q Consensus 246 ~~~~~~~~~~~l~~~l~~~p~~vGvnN-hm---Gs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~ 321 (396) ..++.+++..-|..+-..+-.+.|..- ++ ++.++ .. + ++.-|+-++ T Consensus 302 ~~ls~~~~~~ei~~~~~~i~~~~G~~p~~fRpPyG~~~--~~----v---~~~lg~~~v--------------------- 351 (431) T 2c1i_A 302 SQLSLDEAKKQITDTEDVLTKVLGSSSKLMRPPYGAIT--DD----I---RNSLDLSFI--------------------- 351 (431) T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHSCCCCEECCGGGCCC--HH----H---HHTSSCEEE--------------------- T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC--HH----H---HHHCCCEEE--------------------- T ss_conf 22999999999999999999965999737957854458--99----9---997599799--------------------- Q ss_pred EEEEEE-ECC-CCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCCC Q ss_conf 984588-628-999999999999999999871948999808-8788999999975688769189967774306478 Q gi|254780558|r 322 MVADLY-LDD-QVDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVISQWLQQEHVRDVSVVPLSCLAKLSSP 394 (396) Q Consensus 322 ~~~dvf-LD~-~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~~~ 394 (396) .-++. .|- ..+...|..+... ..+.|. |.+.|. ++.|+++|...++.|+++|+++|+|++|+..... T Consensus 352 -~Wsvds~Dw~~~~~~~i~~~v~~----~~~~G~-IVLmHD~~~~T~~aL~~iI~~Lk~~Gy~fVTl~Ell~~~~~ 421 (431) T 2c1i_A 352 -MWDVDSLDWKSKNEASILTEIQH----QVANGS-IVLMHDIHSPTVNALPRVIEYLKNQGYTFVTIPEMLNTRLK 421 (431) T ss_dssp -CCSEECCHHHHCCHHHHHHHHHH----HCCTTE-EEEEETTSHHHHHHHHHHHHHHHHTTCEECCHHHHHGGGCC T ss_pred -EEEECCCCCCCCCHHHHHHHHHH----CCCCCE-EEEEECCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCCC T ss_conf -96036764577999999999983----679990-99982897519999999999999789999885895678877 No 6 >2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate esterase; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3 Probab=98.37 E-value=4.1e-05 Score=50.56 Aligned_cols=184 Identities=10% Similarity=0.040 Sum_probs=106.6 Q ss_pred CEEEEEECCCCCCCHHHHH---HHHHCCCCCEEEEECC------CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC Q ss_conf 6589997377877168899---9983793508987089------876899999999859929998176656898778785 Q gi|254780558|r 171 ARIAIVVSGLGISQTGTQR---AINLLPANITLAFASN------GNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDS 241 (396) Q Consensus 171 ~riAIVIddlG~~~~~~~~---ai~~LP~~vT~A~~P~------~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp 241 (396) -.|||-+|| |.+. .+.+ .+.+.-.+.||=+.-. .....+.+++..+.||||-.|- |...+ T Consensus 42 ~~VaLTFDD-Gp~~-~t~~il~~L~~~~ikATFFv~G~~~~~~~~~~~p~~~k~~~~~GheIgnHt------~~H~~--- 110 (254) T 2iw0_A 42 GLVALTYDD-GPFT-FTPQLLDILKQNDVRATFFVNGNNWANIEAGSNPDTIRRMRADGHLVGSHT------YAHPD--- 110 (254) T ss_dssp SEEEEEEES-CSCT-THHHHHHHHHHHTCCCEEEECSBSSSBTTSTTHHHHHHHHHHTTCEEEECC------SSCCC--- T ss_pred CEEEEEEEC-CCHH-HHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCHHHHHHHHHCCCEEEECC------CCCCC--- T ss_conf 989998837-9637-199999999977993899996876564335569999999997798888506------77887--- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE----CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH Q ss_conf 5446789989999999999985589359800----123000049899999999985069289974976322678989870 Q gi|254780558|r 242 YTLKVTQTVQQLLNRLRYSLRRGTGYFGVMN----YRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKL 317 (396) Q Consensus 242 ~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnN----hmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~ 317 (396) +..++.++....+......+-...|..- +-.+.+ + ..+++.+++.|+-+++- +-.| T Consensus 111 ---l~~ls~~~~~~ei~~~~~~l~~~~G~~p~~fR~PyG~~--~----~~~~~~l~~~G~~~v~w--~~dt--------- 170 (254) T 2iw0_A 111 ---LNTLSSADRISQMRQLEEATRRIDGFAPKYMRAPYLSC--D----AGCQGDLGGLGYHIIDT--NLDT--------- 170 (254) T ss_dssp ---GGGSCHHHHHHHHHHHHHHHHHHHSCEESEECCGGGCC--C----HHHHHHHHHTTCEEECC--SEEC--------- T ss_pred ---HHHCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC--C----HHHHHHHHHCCCEEEEC--CCCC--------- T ss_conf ---43306588889999999998886197751131897876--9----89999999869989955--5144--------- Q ss_pred CCCEEEEEEEECCC-CCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHH-HHHHHHHHHHHCCCEEEEHHHHHHCC Q ss_conf 99469845886289-99999999999999999871948999808-878899-99999756887691899677743064 Q gi|254780558|r 318 NLPYMVADLYLDDQ-VDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIE-VISQWLQQEHVRDVSVVPLSCLAKLS 392 (396) Q Consensus 318 gvp~~~~dvfLD~~-~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~-~L~~w~~~l~~~gi~lVpvS~l~~~~ 392 (396) .| +.... .+......++..-...+...+..|.+.|. ++.|+. .|...++.|+++|+++|++|+++... T Consensus 171 ------~D-w~~~~~~~~~~~~~~i~~~~~~~~~~~g~IvL~Hd~~~~t~~~~l~~iI~~lk~~Gy~fvtl~ell~~~ 241 (254) T 2iw0_A 171 ------KD-YENNKPETTHLSAEKFNNELSADVGANSYIVLSHDVHEQTVVSLTQKLIDTLKSKGYRAVTVGECLGDA 241 (254) T ss_dssp ------CT-TTSCSTTTHHHHHHHHHHHSCSCGGGCCEEEEECTTSHHHHHTHHHHHHHHHHHTTCEECCHHHHTTCC T ss_pred ------CC-CCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCC T ss_conf ------21-257898605899999999986134899979993599855899999999999998799997889951736 No 7 >2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3 Probab=98.28 E-value=8.4e-05 Score=48.62 Aligned_cols=171 Identities=15% Similarity=0.042 Sum_probs=108.5 Q ss_pred CCEEEEEECCCCCCCHHHH---HHHHHCCCCCEEEEECCCCCH---HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC Q ss_conf 8658999737787716889---999837935089870898768---9999999985992999817665689877878554 Q gi|254780558|r 170 GARIAIVVSGLGISQTGTQ---RAINLLPANITLAFASNGNSL---DRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYT 243 (396) Q Consensus 170 ~~riAIVIddlG~~~~~~~---~ai~~LP~~vT~A~~P~~~~~---~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~ 243 (396) ...|||-+|| |.+.. +. +.+.+.-.+.||=+. +... .+++++..+.||||-.|= |... T Consensus 4 ~g~VaLTFDD-Gp~~~-~~~il~~L~~~~i~aTFFv~--g~~~~~~p~~~~~~~~~GheIg~Hs------~~H~------ 67 (195) T 2cc0_A 4 NGYVGLTFDD-GPSGS-TQSLLNALRQNGLRATMFNQ--GQYAAQNPSLVRAQVDAGMWVANHS------YTHP------ 67 (195) T ss_dssp SEEEEEEEES-CCSTT-HHHHHHHHHHTTCCCEEEEC--HHHHHHCHHHHHHHHHTTCEEEECC------SSCC------ T ss_pred CCEEEEEECC-CCCHH-HHHHHHHHHHCCCCEEEEEE--CHHHHHCHHHHHHHHHCCCEEECCC------CCCC------ T ss_conf 9989998737-98254-99999999987981899997--8335669999999997698842000------3471------ Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEE----CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCC Q ss_conf 46789989999999999985589359800----12300004989999999998506928997497632267898987099 Q gi|254780558|r 244 LKVTQTVQQLLNRLRYSLRRGTGYFGVMN----YRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNL 319 (396) Q Consensus 244 L~~~~~~~~~~~~l~~~l~~~p~~vGvnN----hmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gv 319 (396) -+..++.++++.-+......+-...|... +-+..+ +. .+++.+++.|+-++.- T Consensus 68 ~~~~l~~~~~~~ei~~~~~~l~~~~G~~~~~fr~P~g~~--~~----~~~~~l~~~G~~~v~w----------------- 124 (195) T 2cc0_A 68 HMTQLGQAQMDSEISRTQQAIAGAGGGTPKLFRPPYGET--NA----TLRSVEAKYGLTEVIW----------------- 124 (195) T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHTTSCCCSEECCGGGCC--CH----HHHHHHHHTTCEECCC----------------- T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC--CH----HHHHHHHHCCCEEEEE----------------- T ss_conf 576653899999999999999997599874387898888--99----9999999879979981----------------- Q ss_pred CEEEEEEE-EC-CCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHHHHHHHHHHHCCCEEEEHHHHHH Q ss_conf 46984588-62-8999999999999999999871948999808-878899999997568876918996777430 Q gi|254780558|r 320 PYMVADLY-LD-DQVDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVISQWLQQEHVRDVSVVPLSCLAK 390 (396) Q Consensus 320 p~~~~dvf-LD-~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~ 390 (396) ++. -| +..+.+.|.+.+.++ ++|. |.+.|- ++.|+++|...++.++++|+++|++|+++. T Consensus 125 -----~~~~~D~~~~~~~~i~~~~~~~-----~~G~-IiL~Hd~~~~t~~~L~~ii~~l~~~Gy~fvtl~e~~~ 187 (195) T 2cc0_A 125 -----DVDSQDWNNASTDAIVQAVSRL-----GNGQ-VILMHDWPANTLAAIPRIAQTLAGKGLCSGMISPQTG 187 (195) T ss_dssp -----SEECCGGGTCCHHHHHHHHHTC-----CTTC-EEEEESSCHHHHHHHHHHHHHHHHTTEEECEECTTTS T ss_pred -----CCCHHHHCCCCHHHHHHHHHCC-----CCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCC T ss_conf -----6010110210289999998465-----9892-8997399724999999999999987999997155669 No 8 >1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1 Probab=98.18 E-value=2.7e-05 Score=51.70 Aligned_cols=179 Identities=11% Similarity=0.036 Sum_probs=112.2 Q ss_pred CEEEEEECCCCCCCHHH---HHHHHHCCCCCEEEEECC-CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 65899973778771688---999983793508987089-87689999999985992999817665689877878554467 Q gi|254780558|r 171 ARIAIVVSGLGISQTGT---QRAINLLPANITLAFASN-GNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKV 246 (396) Q Consensus 171 ~riAIVIddlG~~~~~~---~~ai~~LP~~vT~A~~P~-~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~ 246 (396) -.|+|-+||- .+...+ ...+.+.-.+.||-+.-. .....+..++..+.||||--|- |.. .-+. T Consensus 43 k~V~LTFDDg-~~~~~~~~iL~~L~~~~i~aTfFv~g~~~~~~~~~~~~~~~~GheIgnHt------~~H------~~~~ 109 (240) T 1ny1_A 43 KTIYLTFDNG-YENGYTPKVLDVLKKHRVTGTFFVTGHFVKDQPQLIKRMSDEGHIIGNHS------FHH------PDLT 109 (240) T ss_dssp SEEEEEEEES-SCCSCHHHHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECC------SSC------CCGG T ss_pred CEEEEEEECC-CCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHCHHHHHHHHHCCCEEEECC------CCC------CCCC T ss_conf 8799988589-98442899999999859988998323445559899999985898898435------556------8701 Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEC-----CCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCE Q ss_conf 899899999999999855893598001-----230000498999999999850692899749763226789898709946 Q gi|254780558|r 247 TQTVQQLLNRLRYSLRRGTGYFGVMNY-----RGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPY 321 (396) Q Consensus 247 ~~~~~~~~~~l~~~l~~~p~~vGvnNh-----mGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~ 321 (396) .++.+++++.+...-..+-...|.... -++.+ +. .+.+.+++.|+-.++-. .. T Consensus 110 ~~s~~~~~~ei~~~~~~l~~~~G~~~~~~~rpP~g~~--~~----~~~~~l~~~Gy~~v~w~--~~-------------- 167 (240) T 1ny1_A 110 TKTADQIQDELDSVNEEVYKITGKQDNLYLRPPRGVF--SE----YVLKETKRLGYQTVFWS--VA-------------- 167 (240) T ss_dssp GSCHHHHHHHHHHHHHHHHHHHSCCCCCEECCGGGEE--CH----HHHHHHHHTTCEEBCCS--BC-------------- T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC--CH----HHHHHHHHCCCEEEEEE--EE-------------- T ss_conf 0798999999999999999973875765886998987--78----99999998599799877--44-------------- Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHHHHHHHHHHHCCCEEEEHHHHHH Q ss_conf 984588628999999999999999999871948999808-878899999997568876918996777430 Q gi|254780558|r 322 MVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVISQWLQQEHVRDVSVVPLSCLAK 390 (396) Q Consensus 322 ~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~ 390 (396) ..|--+++..+...|..++.+ .+ +.|. |.+.|. ++.|+++|...+..|+++|+++|.+++|+. T Consensus 168 -~~Dw~~~~~~~~~~~~~~~~~---~~-~~g~-IiL~Hd~~~~t~~aL~~ii~~lk~~Gy~fvtl~ell~ 231 (240) T 1ny1_A 168 -FVDWKINNQKGKKYAYDHMIK---QA-HPGA-IYLLHTVSRDNAEALDDAITDLKKQGYTFKSIDDLMF 231 (240) T ss_dssp -CSCCCGGGCCCHHHHHHHHHH---TC-CTTE-EEEECSCSTTHHHHHHHHHHHHHHHTCEEECHHHHHH T ss_pred -CCCCCCCCCHHHHHHHHHHHH---CC-CCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHC T ss_conf -688554563659999999995---67-9990-8997489956999999999999978999988699551 No 9 >2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159} Probab=97.98 E-value=2.5e-05 Score=51.97 Aligned_cols=189 Identities=13% Similarity=0.124 Sum_probs=115.8 Q ss_pred EEEEEECCCCCCCHHHH---HHHHHCCCCCEEEEECC--CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 58999737787716889---99983793508987089--87689999999985992999817665689877878554467 Q gi|254780558|r 172 RIAIVVSGLGISQTGTQ---RAINLLPANITLAFASN--GNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKV 246 (396) Q Consensus 172 riAIVIddlG~~~~~~~---~ai~~LP~~vT~A~~P~--~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~ 246 (396) -|+|-+|| |++..-|. +.+.+.-.+.||-+.-. .....+.+++..+.|||+=.|- |...+. ..--.. T Consensus 108 ~v~LTFDD-Gp~~~~t~~iL~~L~~~~v~ATFFv~G~~i~~~~~~~~k~~~~~GheIgnHt------~~H~~~-~~~~~~ 179 (311) T 2w3z_A 108 LVFLTFDD-GVDPNMTPKILDVLAQQHVHATFFLVGCNITDKVKPILQRQITEGHALGIHS------FSHVYS-LLYPNR 179 (311) T ss_dssp EEEEEEEE-ECCTTHHHHHHHHHHHTTCCCEEEECGGGCCGGGHHHHHHHHHTTCEEEECC------SSCCHH-HHSGGG T ss_pred EEEEEEEC-CCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHCHHHHHHHHHHCCCEEEEEC------CCCCCC-CCCCCC T ss_conf 79997717-9983318999999998599789982574343456999999997498898303------514431-017764 Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEE------ECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCC Q ss_conf 8998999999999998558935980------0123000049899999999985069289974976322678989870994 Q gi|254780558|r 247 TQTVQQLLNRLRYSLRRGTGYFGVM------NYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLP 320 (396) Q Consensus 247 ~~~~~~~~~~l~~~l~~~p~~vGvn------NhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp 320 (396) ..+.+++.+-+.++...+-...|.+ -+-++.+ +...++.+-+.+...|...+|-.....- T Consensus 180 ~~s~~~~~~ei~~~~~~l~~~~G~~~~~~~~r~P~g~~--~~~~~~~~~~~~~~~g~~~~~w~~~~~D------------ 245 (311) T 2w3z_A 180 VGNTQQIVSEVTRTQNALKDQLGQNFKTGVWRYPGGHL--SWTGLEAADKQLAAQGIQWMDWNAAVGD------------ 245 (311) T ss_dssp BCCHHHHHHHHHHHHHHHHHHHCTTBCCCEECCTTCGG--GCBCCHHHHHHHHTTTCEECCCSEECCT------------ T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC--CHHHHHHHHHHHHHCCCEEEECCCCCCC------------ T ss_conf 35899999999999999999858886541315898877--9899999999998769679954676775------------ Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEE---CCHHHHHHHHHHHHHHHHCCCEEEEH Q ss_conf 698458862899999999999999999987194899980---88788999999975688769189967 Q gi|254780558|r 321 YMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAV---AFDESIEVISQWLQQEHVRDVSVVPL 385 (396) Q Consensus 321 ~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh---~~p~Ti~~L~~w~~~l~~~gi~lVpv 385 (396) .+.........+.+.+.++.........+..|.+.| ..+.|+++|.+.+..|+++|+++|.+ T Consensus 246 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvLmHd~~~~~~t~~aL~~lI~~lk~~GY~F~tL 310 (311) T 2w3z_A 246 ---AEPLATRPTTVASMLAFLDGSAKIATNPNVQVVLMHDISEKTITLASLPQIIRYYKDRGYTFAVL 310 (311) T ss_dssp ---TSCGGGCCCSHHHHHHHHHHHTTTCSCTTEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCEECEE T ss_pred ---CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEE T ss_conf ---43346756799999999976543125799979997789994318999999999999789989974 No 10 >2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A Probab=97.97 E-value=3.6e-05 Score=50.95 Aligned_cols=173 Identities=13% Similarity=0.085 Sum_probs=102.2 Q ss_pred CEEEEEECCCCCCCHHHH---HHHHHCCCCCEEEEEC-CC-CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 658999737787716889---9998379350898708-98-768999999998599299981766568987787855446 Q gi|254780558|r 171 ARIAIVVSGLGISQTGTQ---RAINLLPANITLAFAS-NG-NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLK 245 (396) Q Consensus 171 ~riAIVIddlG~~~~~~~---~ai~~LP~~vT~A~~P-~~-~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~ 245 (396) ..|||-+||- .+...+. +.+.+.-.+.||-+.- +. ....+++++..+.||||--|- |.. .-+ T Consensus 5 K~VaLTfDDg-p~~~~t~~il~~L~~~~v~aTFFv~G~~~~~~~~~~~~~~~~~GheIgnHt------~~H------~~~ 71 (216) T 2c71_A 5 KLVALTFDDG-PDNVLTARVLDKLDKYNVKATFMVVGQRVNDSTAAIIRRMVNSGHEIGNHS------WSY------SGM 71 (216) T ss_dssp CEEEEEEESC-CCHHHHHHHHHHHHHHTCCCEEEECGGGCSHHHHHHHHHHHHTTCEEEECC------SSS------SCC T ss_pred CEEEEEEECC-CCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEECCC------CCC------CCH T ss_conf 9999988579-980409999999998698199998162302260999999998799785367------766------783 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEC----CCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCE Q ss_conf 7899899999999999855893598001----230000498999999999850692899749763226789898709946 Q gi|254780558|r 246 VTQTVQQLLNRLRYSLRRGTGYFGVMNY----RGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPY 321 (396) Q Consensus 246 ~~~~~~~~~~~l~~~l~~~p~~vGvnNh----mGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~ 321 (396) ..++.++++..+..+...+-...|..-. -++.+ +.. +++.++ ..+.-+..+ T Consensus 72 ~~~s~~~~~~ei~~~~~~l~~~~G~~~~~fR~P~g~~--~~~----~~~~~~---~~~~~~i~~---------------- 126 (216) T 2c71_A 72 ANMSPDQIRKSIADTNAVIQKYAGTTPKFFRPPNLET--SPT----LFNNVD---LVFVGGLTA---------------- 126 (216) T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHSCCCSEECCGGGCC--CHH----HHHHCC---SEEBCCBCC---------------- T ss_pred HHCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHH--CHH----HHHHHH---HHHHCCCCC---------------- T ss_conf 4429999999999999999997599973696897100--699----999997---897557300---------------- Q ss_pred EEEEEEEC--CCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC----CHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCC Q ss_conf 98458862--8999999999999999999871948999808----87889999999756887691899677743064 Q gi|254780558|r 322 MVADLYLD--DQVDRDKIREKLKGLEEIARTTGQAIGVAVA----FDESIEVISQWLQQEHVRDVSVVPLSCLAKLS 392 (396) Q Consensus 322 ~~~dvfLD--~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~----~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~ 392 (396) .| ...+...+...+. +. -+.|. |.+.|- ...|+++|...+..++++|+++|++|+|+... T Consensus 127 ------~Dw~~~~~~~~~~~~~~---~~-~k~g~-IvL~Hd~~~~~~~t~~aL~~li~~lk~~Gy~fvtl~ell~~~ 192 (216) T 2c71_A 127 ------NDWIPSTTAEQRAAAVI---NG-VRDGT-IILLHDVQPEPHPTPEALDIIIPTLKSRGYEFVTLTELFTLK 192 (216) T ss_dssp ------STTCTTSCHHHHHHHHH---HH-CCTTB-EEEEESCCSSSCCHHHHHHHHHHHHHHTTCEECCHHHHHHHH T ss_pred ------CCCCCCCCHHHHHHHHH---CC-CCCCE-EEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCC T ss_conf ------21777887899999997---27-79994-999779999720699999999999997899998889986176 No 11 >1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii OT3} SCOP: c.6.2.5 Probab=97.04 E-value=0.017 Score=34.08 Aligned_cols=196 Identities=15% Similarity=0.172 Sum_probs=131.5 Q ss_pred CCCCCCC----HHHHHHHHHCCCCCEEEEECCCCC------HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 3778771----688999983793508987089876------899999999859929998176656898778785544678 Q gi|254780558|r 178 SGLGISQ----TGTQRAINLLPANITLAFASNGNS------LDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVT 247 (396) Q Consensus 178 ddlG~~~----~~~~~ai~~LP~~vT~A~~P~~~~------~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~ 247 (396) -|||.+. .+.+++|+ |+ ||-|=+.-+-+ -.+.++.|.+.|-.|=-|- +||+.+ |=+--... T Consensus 7 ~DlGE~~g~~~~g~D~~lm--p~-I~saNIACG~HAGD~~~m~~tv~lA~~~~V~IGAHP-----sypD~~-gFGRr~~~ 77 (255) T 1v6t_A 7 SDLGESFGRYKLGLDEEVM--KY-ITSANVACGWHAGDPLVMRKTVRLAKENDVQVGAHP-----GYPDLM-GFGRRYMK 77 (255) T ss_dssp EEECCCBTTBCCSCHHHHT--TT-CSEEEEECSSSSCCHHHHHHHHHHHHHTTCEEEEEC-----CCSCTT-TTTCSCCC T ss_pred CCCCCCCCCCCCCCCHHHH--HH-HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEECCC-----CCCCCC-CCCCCCCC T ss_conf 0179887887888828998--67-535888507356779999999999998498782689-----977657-99999899 Q ss_pred CCHHHHHHHHHHHHHHCCCC--------EEEEECCCC---CCCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHHHH Q ss_conf 99899999999999855893--------598001230---0004989999999998506--9289974976322678989 Q gi|254780558|r 248 QTVQQLLNRLRYSLRRGTGY--------FGVMNYRGA---MLLSNKESAEVIFKEFAKR--GLLFFDDGSSPRNLTRVLA 314 (396) Q Consensus 248 ~~~~~~~~~l~~~l~~~p~~--------vGvnNhmGs---~~t~~~~~m~~vl~~l~~r--gL~flDs~Ts~~Sva~~~A 314 (396) ++++++.+.+..-++.+-+. ..|--| |. ....|+...+.+++.++.. +|.++- -++|...++| T Consensus 78 ~s~~el~~~i~~Qi~al~~~a~~~g~~l~hVKPH-GALYN~~~~D~~lA~ai~~ai~~~~~~l~l~~---l~~s~~~~~A 153 (255) T 1v6t_A 78 LTPEEARNYILYQVGALYAFAKAEGLELQHVKPH-GALYNAMVKEEDLARAVIEGILDFDKDLILVT---LSNSRVADIA 153 (255) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCC-HHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEE---ETTCHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC-HHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEE---CCCHHHHHHH T ss_conf 9989999999999999999999839902442312-78888886299999999999998597641753---5844999999 Q ss_pred HHHCCCEEEEEEEECCCC-----------------CHHHHHHHHHHHHHHHHH------CCEEEE-----EE--ECCHHH Q ss_conf 870994698458862899-----------------999999999999999987------194899-----98--088788 Q gi|254780558|r 315 PKLNLPYMVADLYLDDQV-----------------DRDKIREKLKGLEEIART------TGQAIG-----VA--VAFDES 364 (396) Q Consensus 315 ~~~gvp~~~~dvfLD~~~-----------------~~~~I~~qL~~l~~~Ar~------~G~AI~-----ig--h~~p~T 364 (396) ++.|+++.. ..|.|-.- |++.+ ++++.+++++ .|.-|- || .-.|.. T Consensus 154 ~~~Gl~~~~-E~FADR~Y~~dG~Lv~R~~~gAvi~d~~~~---~~q~~~~~~~g~V~ti~G~~I~i~adTICvHgDtp~A 229 (255) T 1v6t_A 154 EEMGLKVAH-EVFADRAYNPDGTLVPRGRPGAVIEDKEEI---AERVISMVKDGGIRAINGEWVDLKVDTICVHGDNPKA 229 (255) T ss_dssp HHHTCCEEE-EECTTBCBCTTSCBCC-----CBCCCHHHH---HHHHHHHHHHSEEECTTSCEEECCCSEEECCCSSHHH T ss_pred HHCCCCEEE-EEEECCCCCCCCCEEECCCCCCCCCCHHHH---HHHHHHHHHCCCEEECCCCEEECCCCEEEECCCCHHH T ss_conf 973997259-997504488999886366865557999999---9999999867988914898875168989989998789 Q ss_pred HHHHHHHHHHHHHCCCEEEEHHHHHH Q ss_conf 99999997568876918996777430 Q gi|254780558|r 365 IEVISQWLQQEHVRDVSVVPLSCLAK 390 (396) Q Consensus 365 i~~L~~w~~~l~~~gi~lVpvS~l~~ 390 (396) ++.++..-..|++.||++.|+++++| T Consensus 230 v~~a~~ir~~L~~~gi~I~pl~~~~~ 255 (255) T 1v6t_A 230 VEITSYIRKVLEEEGVKIVPMKEFIR 255 (255) T ss_dssp HHHHHHHHHHHHHTTCEECCGGGTC- T ss_pred HHHHHHHHHHHHHCCCEEECHHHHCC T ss_conf 99999999999988999973788509 No 12 >3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A Probab=96.79 E-value=0.0052 Score=37.32 Aligned_cols=188 Identities=10% Similarity=0.073 Sum_probs=113.9 Q ss_pred HHHHHHHHCCCCCEEEEEC-CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC Q ss_conf 8899998379350898708-987689999999985992999817665689877878554467899899999999999855 Q gi|254780558|r 186 GTQRAINLLPANITLAFAS-NGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRG 264 (396) Q Consensus 186 ~~~~ai~~LP~~vT~A~~P-~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~ 264 (396) .-.+.+.++-.+.||.+.- ......+.++...+.||||..|= |.. .....++.++.++.+..+++.+ T Consensus 85 Ril~ll~~~~i~aTffv~g~~ae~~P~~v~~i~~~GhEi~~HG------~~h------~~~~~l~~~~e~~~i~~~~~~l 152 (308) T 3cl6_A 85 RILKLFKAFDIPLTIFAVAMAAQRHPDVIRAMVAAGHEICSHG------YRW------IDYQYMDEAQEREHMLEAIRIL 152 (308) T ss_dssp HHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECC------SSS------SCCTTCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCEEEEEHHHHHHCHHHHHHHHHCCCHHHHCH------HHC------CCCCCCCHHHHHHHHHHHHHHH T ss_conf 9999999759982898369999889799999997545576570------211------0544589999999999999999 Q ss_pred CCCEEEE--ECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHH-----HHHHHHHCCCEEE--EEEEEC---CCC Q ss_conf 8935980--012300004989999999998506928997497632267-----8989870994698--458862---899 Q gi|254780558|r 265 TGYFGVM--NYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLT-----RVLAPKLNLPYMV--ADLYLD---DQV 332 (396) Q Consensus 265 p~~vGvn--NhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva-----~~~A~~~gvp~~~--~dvfLD---~~~ 332 (396) ..++|.- -+....++++ .. ...|++.|+.|.-|...-..-- ..--...-+|+.. .|.++- +.. T Consensus 153 ~~~tG~~p~G~~~p~~~~~-~t----~~LL~e~Gf~Y~ss~~~dD~Py~~~~~~~~~~~l~iP~~~~~~D~~~~~~~~~~ 227 (308) T 3cl6_A 153 TELTGERPLGWYTGRTGPN-TR----RLVMEEGGFLYDCDTYDDDLPYWEPNNPTGKPHLVIPYTLDTNDMRFTQVQGFN 227 (308) T ss_dssp HHHHSSCCSEECCSSCCTT-HH----HHHHHHCCCSEECCCCCCSSCEECSCCTTCSCCEECCCCSSSBGGGGGSSSCCS T ss_pred HHHCCCCCCEECCCCCCCC-CH----HHHHHHCCCEEECCCCCCCCCCEEECCCCCCCEEEEEEEHHCCHHHHHHCCCCC T ss_conf 9880999765708999997-38----889872397897777777776246437888715985112101604687506888 Q ss_pred CH----HHHHHHHHHHHHHHHHCCEEEEEE-ECC----HHHHHHHHHHHHHHHHC-CCEEEEHHHHHH Q ss_conf 99----999999999999998719489998-088----78899999997568876-918996777430 Q gi|254780558|r 333 DR----DKIREKLKGLEEIARTTGQAIGVA-VAF----DESIEVISQWLQQEHVR-DVSVVPLSCLAK 390 (396) Q Consensus 333 ~~----~~I~~qL~~l~~~Ar~~G~AI~ig-h~~----p~Ti~~L~~w~~~l~~~-gi~lVpvS~l~~ 390 (396) +. +.+..+|+.+-+-..++|....|+ ||+ |.-+..|.+.+..+.++ ||-++..+++.+ T Consensus 228 ~~~~~~~~~~d~fd~~~~e~~~~~~~~~i~lHP~i~G~p~Ri~~Le~~l~~i~~~~dVW~at~~eIA~ 295 (308) T 3cl6_A 228 KGDDFFEYLKDAFDVLYAEGAEAPKMLSIGLHCRLIGRPARLAALQRFIEYAKSHEQVWFTRRVDIAR 295 (308) T ss_dssp SHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEEHHHHTSHHHHHHHHHHHHHHHTSSSEEECCHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHH T ss_conf 67999999999999999843778888999648753598899999999999997589989827899999 No 13 >2i5i_A UPF0249 protein EF_3048; putative cellobiose-phosphate cleavage protein, structural G joint center for structural genomics, JCSG; HET: MSE; 1.70A {Enterococcus faecalis V583} SCOP: c.6.2.8 Probab=96.32 E-value=0.055 Score=30.86 Aligned_cols=213 Identities=10% Similarity=0.010 Sum_probs=129.1 Q ss_pred EEEEEECCCCCCCHHHHHHHHHC---CCCCEEEEECCCCCHHHHHHHHHH--CCCCEEEECCCCC-CCCCCCCCC----- Q ss_conf 58999737787716889999837---935089870898768999999998--5992999817665-689877878----- Q gi|254780558|r 172 RIAIVVSGLGISQTGTQRAINLL---PANITLAFASNGNSLDRWMKEAKK--KGQEAILQIPMQA-FDESYNEDD----- 240 (396) Q Consensus 172 riAIVIddlG~~~~~~~~ai~~L---P~~vT~A~~P~~~~~~~~~~~Ar~--~G~EvllhlPMEp-~~~~~~~pG----- 240 (396) ||-|--||+|++..... +|.++ ..-=+.+++..++...+.++.++. .+-.|=||+=+-- ...|-..+- T Consensus 6 ~lii~ADDfG~~~~vn~-gi~~~~~~G~lts~s~Mvn~p~~~~a~~~~k~~~~~~~vGlHl~Lt~~~~~p~~~~~~~~~l 84 (263) T 2i5i_A 6 KLIINADDFGYTPAVTQ-GIIEAHKRGVVTSTTALPTSPYFLEAMESARISAPTLAIGVHLTLTLNQAKPILPREMVPSL 84 (263) T ss_dssp EEEEEEEEETSSHHHHH-HHHHHHHSSSCCEEEECTTSTTHHHHHHHHHHHCTTCEEEEEECSCCTTCCCSSCTTTSGGG T ss_pred EEEEECCCCCCCHHHHH-HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHCCCC T ss_conf 89997776789877899-99999987986687863588069999999986589876456677416778888983546765 Q ss_pred ---------CCCCCCCCCHHHHHHHHHHHHHHCCCC----EEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC Q ss_conf ---------554467899899999999999855893----5980012300004989999999998506928997497632 Q gi|254780558|r 241 ---------SYTLKVTQTVQQLLNRLRYSLRRGTGY----FGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPR 307 (396) Q Consensus 241 ---------p~~L~~~~~~~~~~~~l~~~l~~~p~~----vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~ 307 (396) ...+.-..+.+++++.++.-++++-.. .-+..|++.-. -.+.....+.+..++.|+-+........ T Consensus 85 ~~~~g~f~~~~~~~~~~~~~ev~~Ei~AQi~~f~~~g~~p~hiDgH~hvh~-~~p~i~~~~~~l~~~y~lp~r~~~~~~~ 163 (263) T 2i5i_A 85 VDEAGYFWHQSIFEEKVNLEEVYNEWDAQIISFMKSGRRPDHIDSHHNVHG-KNKKLLGVALALARKYQLPLRNASRSIE 163 (263) T ss_dssp BCTTSCBCCHHHHTTTCCHHHHHHHHHHHHHHHGGGSSCCSCEEEGGGGGG-SSHHHHHHHHHHHHHHTCCBCCCCCSGG T ss_pred CCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC-CCHHHHHHHHHHHHHHCCCEEECCCCCC T ss_conf 187764313356541389999999999999999992899873525452002-6878999999999994998886410113 Q ss_pred CHH-HHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCH--HHHH--------------HH-- Q ss_conf 267-8989870994698458862899999999999999999987194899980887--8899--------------99-- Q gi|254780558|r 308 NLT-RVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVAFD--ESIE--------------VI-- 368 (396) Q Consensus 308 Sva-~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p--~Ti~--------------~L-- 368 (396) ... ....+....+...-..+.+...+.+.+.+.|+.+. ....|....++||-- ..+. +| T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~eim~HPg~~d~~l~~~~~~~~~R~~E~~~L~s 241 (263) T 2i5i_A 164 TKDYLELYQDVRTPDEMLYQFYDKAISTETILQLLDMVV--CSEGEVFEINCHPAFIDTILQNQSGYCMPRIREVEILTS 241 (263) T ss_dssp GGGGGGGTTTSCCCSEEECCCSGGGCSHHHHHHHHHHHH--HSSCSEEEEEECCCCBCHHHHHHCSSCTHHHHHHHHHTC T ss_pred CCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCCCCCHHHHHCCCCCCHHHHHHHHHCC T ss_conf 244688960888765415232244579899999999876--358881699954798976665069864206999999749 Q ss_pred HHHHHHHHHCCCEEEEHHHH Q ss_conf 99975688769189967774 Q gi|254780558|r 369 SQWLQQEHVRDVSVVPLSCL 388 (396) Q Consensus 369 ~~w~~~l~~~gi~lVpvS~l 388 (396) .++..-+++.||+|+.-++| T Consensus 242 ~~~~~~l~~~~I~Li~y~dL 261 (263) T 2i5i_A 242 QEVKEAIEERGILLANYESL 261 (263) T ss_dssp HHHHHHHHHTTCEEECGGGG T ss_pred HHHHHHHHHCCCEEECHHHC T ss_conf 99999999879899537850 No 14 >2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} SCOP: c.6.2.5 Probab=95.27 E-value=0.15 Score=28.13 Aligned_cols=191 Identities=16% Similarity=0.146 Sum_probs=125.1 Q ss_pred CCCCCCC----HHHHHHHHHCCCCCEEEEECCCC------CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 3778771----68899998379350898708987------6899999999859929998176656898778785544678 Q gi|254780558|r 178 SGLGISQ----TGTQRAINLLPANITLAFASNGN------SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVT 247 (396) Q Consensus 178 ddlG~~~----~~~~~ai~~LP~~vT~A~~P~~~------~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~ 247 (396) -|||.+. .+.+++|+ |+ ||-|=+.-+- .-.+.++.|++.|-.|=-|- +||+.+ |=+--... T Consensus 7 ~DlGE~~g~~~~g~D~~lm--p~-I~saNIACG~HAGD~~~m~~tv~lA~~~~V~IGAHP-----sypD~~-gFGRr~~~ 77 (250) T 2dfa_A 7 ADAGESYGAFAYGHDREIF--PL-VSSANLACGFHGGSPGRILEAVRLAKAHGVAVGAHP-----GFPDLV-GFGRREMA 77 (250) T ss_dssp EEECCCBTTBCCSCHHHHT--TT-CSEEEEECSSSSCCHHHHHHHHHHHHHTTCEEEEEC-----CCSCTT-TTTCSCCC T ss_pred ECCCCCCCCCCCCCHHHHH--HH-HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEECCC-----CCCCCC-CCCCCCCC T ss_conf 0079987887888839998--67-535887517256779999999999998598781479-----977645-79998788 Q ss_pred CCHHHHHHHHHHHHHHCCCCE---EE-EECC---CC---CCCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHHHHH Q ss_conf 998999999999998558935---98-0012---30---0004989999999998506--92899749763226789898 Q gi|254780558|r 248 QTVQQLLNRLRYSLRRGTGYF---GV-MNYR---GA---MLLSNKESAEVIFKEFAKR--GLLFFDDGSSPRNLTRVLAP 315 (396) Q Consensus 248 ~~~~~~~~~l~~~l~~~p~~v---Gv-nNhm---Gs---~~t~~~~~m~~vl~~l~~r--gL~flDs~Ts~~Sva~~~A~ 315 (396) ++++|+.+.+..-+..+-+.. |+ .+|. |+ ....|+...+.+++.++.. +|.++ +-+.|...+.|+ T Consensus 78 ~s~~el~~~i~~Qi~al~~~a~~~g~~l~hVKpHGALYn~~~~d~~la~ai~~ai~~~~~~l~l~---~~~~s~~~~~A~ 154 (250) T 2dfa_A 78 LSPEEVYADVLYQIGALSAFLKAEGLPLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLV---VLPGTVYEEEAR 154 (250) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEE---ECTTSHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE---EECCCHHHHHHH T ss_conf 99999999999999999999998199752205027899999865999999999999859986799---837847899999 Q ss_pred HHCCCEEEEEEEECCC-----------------CCHHHHHHHHHHHHHHHHHC------CE-------EEEEEECCHHHH Q ss_conf 7099469845886289-----------------99999999999999999871------94-------899980887889 Q gi|254780558|r 316 KLNLPYMVADLYLDDQ-----------------VDRDKIREKLKGLEEIARTT------GQ-------AIGVAVAFDESI 365 (396) Q Consensus 316 ~~gvp~~~~dvfLD~~-----------------~~~~~I~~qL~~l~~~Ar~~------G~-------AI~igh~~p~Ti 365 (396) +.|+++.. ..|.|-. .|++.+.+| ..++++++ |. -|-+-.-.|+.+ T Consensus 155 ~~Gl~~~~-E~FADR~Y~~dG~Lv~R~~~gAvi~d~~~~~~q---v~~~~~~g~V~t~~G~~i~i~adTiCvHgDtp~Av 230 (250) T 2dfa_A 155 KAGLRVVL-EAFPERAYLRSGQLAPRSMPGSWITDPEEAARR---ALRMVLEGKVEALDGGEVAVRADTLCIHGDNPNAP 230 (250) T ss_dssp HTTCCEEE-EECTTBCBCTTSSBCCTTSTTCBCCCHHHHHHH---HHHHHHTSEEEBTTSSEEECCCSEEEEC---CCHH T ss_pred HCCCCEEE-EEEECCCCCCCCCEEEECCCCCCCCCHHHHHHH---HHHHHHCCCEEECCCCEEECCCCEEEECCCCHHHH T ss_conf 86996689-997326688999888632652201687999999---99999779889168988743578899899987899 Q ss_pred HHHHHHHHHHHHCCCEEEE Q ss_conf 9999997568876918996 Q gi|254780558|r 366 EVISQWLQQEHVRDVSVVP 384 (396) Q Consensus 366 ~~L~~w~~~l~~~gi~lVp 384 (396) +.++..-..|++.||++.| T Consensus 231 ~~a~~ir~~L~~~gi~I~~ 249 (250) T 2dfa_A 231 EVARAVREALEQAGVEVRA 249 (250) T ss_dssp HHHHHHHHHHHTTTCEECC T ss_pred HHHHHHHHHHHHCCCEEEC T ss_conf 9999999999988797816 No 15 >1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5 Probab=95.06 E-value=0.063 Score=30.48 Aligned_cols=194 Identities=13% Similarity=0.084 Sum_probs=128.4 Q ss_pred CCCCCCCHHHHHHHHHCCCCCEEEEECCCC------CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 377877168899998379350898708987------68999999998599299981766568987787855446789989 Q gi|254780558|r 178 SGLGISQTGTQRAINLLPANITLAFASNGN------SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQ 251 (396) Q Consensus 178 ddlG~~~~~~~~ai~~LP~~vT~A~~P~~~------~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~ 251 (396) -|||.+. +..++|+.+ ||-|=+.-+- .-.+.++.|.+.|-.|=.|- +||+.+ |=+=-...++++ T Consensus 7 ~DlGE~~-g~D~~lmp~---I~saNIACG~HaGD~~~m~~tv~lA~~~~V~IGAHP-----sypD~~-gFGRr~~~~s~~ 76 (252) T 1xw8_A 7 ADLGEGC-ASDAELLTL---VSSANIACGFHAGDAQIMQACVREAIKNGVAIGAHP-----SFPDRE-NFGRSAMQLPPE 76 (252) T ss_dssp EEESSSC-SCHHHHHHH---CSEEEEECSSSSCCHHHHHHHHHHHHHHTCEEEEEC-----CCC--------CCCCCCHH T ss_pred CCCCCCC-CCHHHHHHH---HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEECCC-----CCCCCC-CCCCCCCCCCHH T ss_conf 3468886-887999867---646888607356779999999999998498780589-----999767-899887889999 Q ss_pred HHHHHHHHHHHHCCCCE--------EEEECCCC---CCCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHHHHHHHC Q ss_conf 99999999998558935--------98001230---0004989999999998506--92899749763226789898709 Q gi|254780558|r 252 QLLNRLRYSLRRGTGYF--------GVMNYRGA---MLLSNKESAEVIFKEFAKR--GLLFFDDGSSPRNLTRVLAPKLN 318 (396) Q Consensus 252 ~~~~~l~~~l~~~p~~v--------GvnNhmGs---~~t~~~~~m~~vl~~l~~r--gL~flDs~Ts~~Sva~~~A~~~g 318 (396) |+.+.+.+-++.+-... .|--| |. ....|+...+.+++.++.. +|.++- .+.|...+.|++.| T Consensus 77 el~~~i~~Qi~al~~~a~~~g~~l~hVKpH-GALYn~a~~d~~lA~~i~~ai~~~~~~l~l~~---~~~s~~~~~A~~~G 152 (252) T 1xw8_A 77 TVYAQTLYQIGALATIARAQGGVMRHVKPH-GMLYNQAAKEAQLADAIARAVYACDPALILVG---LAGSELIRAGKQYG 152 (252) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEECCC-HHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEE---ETTSHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEECCC-HHHHHHHHCCHHHHHHHHHHHHHHCCCHHHCC---CCCCHHHHHHHHCC T ss_conf 999999999999999999849963102503-69998751379999999999998594154424---88749999998759 Q ss_pred CCEEEEEEEECCCCCH----------HH----HHHHHHHHHHHHHH------CCEEEE-----EE--ECCHHHHHHHHHH Q ss_conf 9469845886289999----------99----99999999999987------194899-----98--0887889999999 Q gi|254780558|r 319 LPYMVADLYLDDQVDR----------DK----IREKLKGLEEIART------TGQAIG-----VA--VAFDESIEVISQW 371 (396) Q Consensus 319 vp~~~~dvfLD~~~~~----------~~----I~~qL~~l~~~Ar~------~G~AI~-----ig--h~~p~Ti~~L~~w 371 (396) +++.. .+|.|-.-+. .+ ....++++.++++. .|.-|- || .-.|..++.++.. T Consensus 153 l~~~~-E~FADR~Y~~dG~LvpR~~~gAvi~d~~~~~~qv~~~~~~g~V~ti~G~~i~i~adTICvHgDtp~Av~~a~~i 231 (252) T 1xw8_A 153 LTTRE-EVFADRGYQADGSLVPRSQSGALIENEEQALAQTLEMVQHGRVKSITGEWATVAAQTVCLHGDGEHALAFARRL 231 (252) T ss_dssp CCEEE-EECTTSCBCTTSSBCCTTTCC-----CTTHHHHHHHHHHHSEEECTTSCEEECCCCEEECCCCC-CCHHHHHHH T ss_pred CCEEE-EEEECCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCEECCCCCEEEECCCCHHHHHHHHHH T ss_conf 97799-99862657899998862477875489999999999999779878678998017888799899987899999999 Q ss_pred HHHHHHCCCEEEEHH Q ss_conf 756887691899677 Q gi|254780558|r 372 LQQEHVRDVSVVPLS 386 (396) Q Consensus 372 ~~~l~~~gi~lVpvS 386 (396) -..|++.||++.|+- T Consensus 232 r~~L~~~gi~I~~~~ 246 (252) T 1xw8_A 232 RSAFAEKGIVVAALE 246 (252) T ss_dssp HHHC----CCBCCCC T ss_pred HHHHHHCCCEEEECC T ss_conf 999998899897152 No 16 >3hft_A WBMS, polysaccharide deacetylase involved in O- antigen biosynthesis; NP_886680.1, structural genomics; HET: MSE; 1.90A {Bordetella bronchiseptica} Probab=88.99 E-value=1.1 Score=22.69 Aligned_cols=109 Identities=14% Similarity=-0.014 Sum_probs=74.5 Q ss_pred EEEEEECCCCCCCHHHHH---HHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC Q ss_conf 589997377877168899---99837935089870898768999999998599299981766568987787855446789 Q gi|254780558|r 172 RIAIVVSGLGISQTGTQR---AINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQ 248 (396) Q Consensus 172 riAIVIddlG~~~~~~~~---ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~ 248 (396) +|++-+|+.+-+...+.+ -+.+-..+.||=+.-.. ....+...+.||||=+|= | -+.+..++ T Consensus 38 ~v~ltfD~d~~~~~~~~~~l~~l~~~~i~aTfFvtg~s---~~l~~~~~~~ghEIG~H~------~------~H~~~~~~ 102 (257) T 3hft_A 38 RIFLTFDIDWAADFVLQDTIDLIEGAGVCATWFATHST---PLLENIRRNPLFELGVHP------N------FNPLLAGA 102 (257) T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHHTCCEEEEECSCC---THHHHHHHCTTEEEEECC------C------CHHHHHSC T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC---HHHHHHHHCCCCEEEECC------C------CCCCCCCC T ss_conf 38999767988655599999999975996599956897---899999974995897558------7------56673110 Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 989999999999985589359800123000049899999999985069289974 Q gi|254780558|r 249 TVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDD 302 (396) Q Consensus 249 ~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs 302 (396) +.++.++.|+...+-++..+|.-.|-++ .+. ..++.|+++|+.|--| T Consensus 103 ~~~~~~~~l~~~~~i~~~~~g~RaP~~~---~s~----~~l~~L~e~G~~ydsS 149 (257) T 3hft_A 103 HAEGVQEILDRTLELAPGCVSVRSHSLV---QAT----SILNMFGERRLRYDCN 149 (257) T ss_dssp CSCCHHHHHHHHHTTSTTCCEECCGGGC---CCH----HHHHHHHHTTCCEECC T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCC---CCH----HHHHHHHHCCCEEEEE T ss_conf 4899999999999760886276789720---398----9999999869807751 No 17 >2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A* Probab=86.66 E-value=1.5 Score=21.80 Aligned_cols=149 Identities=11% Similarity=0.126 Sum_probs=70.8 Q ss_pred CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC---CCCCCH Q ss_conf 87689999999985992999817665689877878554467899899999999999855893598001230---000498 Q gi|254780558|r 206 GNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGA---MLLSNK 282 (396) Q Consensus 206 ~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs---~~t~~~ 282 (396) ..+..++++.+++.|++. +.++....+ ..++++ .+.|...+.+..=.+-...+... -...|+ T Consensus 35 ~~d~~~~i~~~ae~Gfd~-iEl~~~~~~-------------~~~~~~-~~~lk~~l~~~gL~i~~~~~~~~~~~~~s~d~ 99 (309) T 2hk0_A 35 SAKFGPYIEKVAKLGFDI-IEVAAHHIN-------------EYSDAE-LATIRKSAKDNGIILTAGIGPSKTKNLSSEDA 99 (309) T ss_dssp TSCSHHHHHHHHHTTCSE-EEEEHHHHT-------------TSCHHH-HHHHHHHHHHTTCEEEEECCCCSSSCSSCSCH T ss_pred CCCHHHHHHHHHHHCCCE-EEECCCCCC-------------CCCHHH-HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCH T ss_conf 989999999999849998-996767666-------------489999-99999999984998999626876789899899 Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEE------EEECCCCC----HHHHHHHHHHHHHHHHHCC Q ss_conf 9999999998506928997497632267898987099469845------88628999----9999999999999998719 Q gi|254780558|r 283 ESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVAD------LYLDDQVD----RDKIREKLKGLEEIARTTG 352 (396) Q Consensus 283 ~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~d------vfLD~~~~----~~~I~~qL~~l~~~Ar~~G 352 (396) ...+..++.+++ +-.+|..+|.+..... ..-+...+ .+.+...|.++..+|+++| T Consensus 100 ~~r~~~i~~l~~---------------~ie~A~~lGa~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~G 164 (309) T 2hk0_A 100 AVRAAGKAFFER---------------TLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLG 164 (309) T ss_dssp HHHHHHHHHHHH---------------HHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHH---------------HHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999999---------------99999982998898416788677788876899999999999999999998617 Q ss_pred EEEEEE------ECCHHHHHHHHHHHHHHHHCCCEEEE Q ss_conf 489998------08878899999997568876918996 Q gi|254780558|r 353 QAIGVA------VAFDESIEVISQWLQQEHVRDVSVVP 384 (396) Q Consensus 353 ~AI~ig------h~~p~Ti~~L~~w~~~l~~~gi~lVp 384 (396) .-|+|= +.+..|.+.+.+++..+...++.++. T Consensus 165 v~l~iE~~~~~~~~~~~t~~~~~~ll~~v~~~~vgl~~ 202 (309) T 2hk0_A 165 INLCIEVLNRFENHVLNTAAEGVAFVKDVGKNNVKVML 202 (309) T ss_dssp CEEEEECCCTTTCSSCCSHHHHHHHHHHHTCTTEEEEE T ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC T ss_conf 64478844764553569999974210000367765544 No 18 >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Probab=84.89 E-value=1.8 Score=21.26 Aligned_cols=127 Identities=13% Similarity=0.099 Sum_probs=74.8 Q ss_pred HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 99998599299981766568987787855446789989999999999985589359800123000049899999999985 Q gi|254780558|r 214 KEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFA 293 (396) Q Consensus 214 ~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~ 293 (396) ..+.+.|+-|++ +...|+.+++..|+....+.++...--+ |-..-.+.......+..+. T Consensus 226 ~~~~~~g~~Vl~------------------~SlEm~~~~~~~R~~a~~~~v~~~~i~~---~~~~~~~~~~~~~~~~~~~ 284 (454) T 2r6a_A 226 NVATKTNENVAI------------------FSLEMSAQQLVMRMLCAEGNINAQNLRT---GKLTPEDWGKLTMAMGSLS 284 (454) T ss_dssp HHHHHSSCCEEE------------------EESSSCHHHHHHHHHHHHHTCCHHHHHT---SCCCHHHHHHHHHHHHHHH T ss_pred HHHHHCCCCEEE------------------EECCCCHHHHHHHHHHHHHCCCHHHHCC---CCCCHHHHHHHHHHHHHHH T ss_conf 576625980799------------------8078999999999999873356776346---9998789999999999876 Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCC-----------CCHHHHHHHHHHHHHHHHHCCEEEEEE-ECC Q ss_conf 06928997497632267898987099469845886289-----------999999999999999998719489998-088 Q gi|254780558|r 294 KRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQ-----------VDRDKIREKLKGLEEIARTTGQAIGVA-VAF 361 (396) Q Consensus 294 ~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~-----------~~~~~I~~qL~~l~~~Ar~~G~AI~ig-h~~ 361 (396) ...+++-|.....-+.....++.....+...-+|+|.- .....|..-..+|-.+|++.+..|.+. |.. T Consensus 285 ~~~l~i~~~~~~~~~~i~~~~r~~~~~~g~~~vviDyl~~~~~~~~~~~~~~~~i~~i~~~Lk~lA~~~~v~vi~~sqln 364 (454) T 2r6a_A 285 NAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLS 364 (454) T ss_dssp SSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCC T ss_pred HCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCC T ss_conf 36606733667646899999999998549968999744420467888866999999999999999999798599981568 No 19 >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Probab=78.46 E-value=3.1 Score=19.79 Aligned_cols=125 Identities=16% Similarity=0.097 Sum_probs=74.6 Q ss_pred HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 99998599299981766568987787855446789989999999999985589359800123000049899999999985 Q gi|254780558|r 214 KEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFA 293 (396) Q Consensus 214 ~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~ 293 (396) ..|.++|+-|+. +...|+.+++..|+......++...--++ .....+...+....+.++ T Consensus 223 ~~a~~~g~~v~~------------------~slEm~~~~~~~r~~a~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~l~ 281 (444) T 2q6t_A 223 NAALKEGVGVGI------------------YSLEMPAAQLTLRMMCSEARIDMNRVRLG---QLTDRDFSRLVDVASRLS 281 (444) T ss_dssp HHHHTTCCCEEE------------------EESSSCHHHHHHHHHHHHTTCCTTTCCGG---GCCHHHHHHHHHHHHHHH T ss_pred HHHHHCCCEEEE------------------ECCCCCHHHHHHHHHHHHCCCCCHHHHCC---CCCHHHHHHHHHHHHHHH T ss_conf 999977994999------------------85889999999999987528882122237---762778999999999986 Q ss_pred CCCCEEEECCCC-C---CCHHHHHHHHHCCCEEEEEEEECCCC-------------CHHHHHHHHHHHHHHHHHCCEEEE Q ss_conf 069289974976-3---22678989870994698458862899-------------999999999999999987194899 Q gi|254780558|r 294 KRGLLFFDDGSS-P---RNLTRVLAPKLNLPYMVADLYLDDQV-------------DRDKIREKLKGLEEIARTTGQAIG 356 (396) Q Consensus 294 ~rgL~flDs~Ts-~---~Sva~~~A~~~gvp~~~~dvfLD~~~-------------~~~~I~~qL~~l~~~Ar~~G~AI~ 356 (396) +..+++.|.... . .+.+.......++ .-+|+|.-+ ...+|..-..+|-.+|++.+..|. T Consensus 282 ~~~l~i~d~~~~t~~~i~~~~~~~~~~~~~----~~vviDyl~~~~~~~~~~~~~~~~~~i~~i~~~Lk~lA~~~~i~vi 357 (444) T 2q6t_A 282 EAPIYIDDTPDLTLMEVRARARRLVSQNQV----GLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPII 357 (444) T ss_dssp TSCEEEECCTTCBHHHHHHHHHHHHHHSCC----CEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEE T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC----CEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEE T ss_conf 398799689999999999999986651467----8599962454214556776420999999999999999997398799 Q ss_pred -EEECCHH Q ss_conf -9808878 Q gi|254780558|r 357 -VAVAFDE 363 (396) Q Consensus 357 -igh~~p~ 363 (396) +.|.... T Consensus 358 ~~sqlnr~ 365 (444) T 2q6t_A 358 ALSQLSRA 365 (444) T ss_dssp EEEECCGG T ss_pred EEECCCCC T ss_conf 98514821 No 20 >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Probab=77.46 E-value=3.3 Score=19.61 Aligned_cols=100 Identities=15% Similarity=0.106 Sum_probs=64.2 Q ss_pred CCCCCCHHHHHHHHHHHHHHCCC--------CEEEEECCCCC-CCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH Q ss_conf 46789989999999999985589--------35980012300-0049899999999985069289974976322678989 Q gi|254780558|r 244 LKVTQTVQQLLNRLRYSLRRGTG--------YFGVMNYRGAM-LLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLA 314 (396) Q Consensus 244 L~~~~~~~~~~~~l~~~l~~~p~--------~vGvnNhmGs~-~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A 314 (396) +-..++.+++..|+......... ..-+-+..++. .......++.+........+.++|+.+...+ T Consensus 74 i~~E~~~~~i~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~------ 147 (279) T 1nlf_A 74 LPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHI------ 147 (279) T ss_dssp EESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCC------ T ss_pred EECCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHCC------ T ss_conf 83567899999999998522585666532012111255664101227999999998567853998160555247------ Q ss_pred HHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEE-EEECCHH Q ss_conf 870994698458862899999999999999999987194899-9808878 Q gi|254780558|r 315 PKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIG-VAVAFDE 363 (396) Q Consensus 315 ~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~-igh~~p~ 363 (396) .++.+...+..-+..+..+|++.|.+|. |.|.... T Consensus 148 --------------~~en~~~~~~~~~~~l~~~a~~~g~~vi~v~H~~K~ 183 (279) T 1nlf_A 148 --------------EEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKG 183 (279) T ss_dssp --------------SCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--- T ss_pred --------------CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf --------------887743788999999999998759979998367864 No 21 >2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} Probab=70.10 E-value=5 Score=18.48 Aligned_cols=145 Identities=15% Similarity=0.135 Sum_probs=99.0 Q ss_pred EECCCCCCC----HHHHHHHHHCCCCCEEEEECCCCC------HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 973778771----688999983793508987089876------8999999998599299981766568987787855446 Q gi|254780558|r 176 VVSGLGISQ----TGTQRAINLLPANITLAFASNGNS------LDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLK 245 (396) Q Consensus 176 VIddlG~~~----~~~~~ai~~LP~~vT~A~~P~~~~------~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~ 245 (396) +=-|||.+. .+..++|+.+ ||-|=+.-+-+ -++.++.|++.|-.|=-|- +||+.+ |=+--. T Consensus 11 lN~DlGE~fg~~~~g~D~~lmp~---I~saNIACG~HAGD~~~m~~tv~lA~~~~V~IGAHP-----sypD~~-gFGRr~ 81 (252) T 2x5e_A 11 LNCDMGESFGAWRMGDDVHSMPL---VDQANLACGFHAGDPLTMRRAVELAVRHGVSIGAHP-----AYPDLS-GFGRRS 81 (252) T ss_dssp EEEEECCCBTTBCCSCHHHHGGG---CSEEEEECSSSSCCHHHHHHHHHHHHHTTCEEEEEC-----CCSCTT-TTTCSC T ss_pred EEEECCCCCCCCCCCCHHHHHHH---HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEECCC-----CCCCCC-CCCCCC T ss_conf 87007999888677885999867---525888506256799999999999998599783689-----987657-899998 Q ss_pred CCCCHHHHHHHHHHHHHHCCCC--------EEEEECCCCC---CCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHH Q ss_conf 7899899999999999855893--------5980012300---004989999999998506--92899749763226789 Q gi|254780558|r 246 VTQTVQQLLNRLRYSLRRGTGY--------FGVMNYRGAM---LLSNKESAEVIFKEFAKR--GLLFFDDGSSPRNLTRV 312 (396) Q Consensus 246 ~~~~~~~~~~~l~~~l~~~p~~--------vGvnNhmGs~---~t~~~~~m~~vl~~l~~r--gL~flDs~Ts~~Sva~~ 312 (396) ..++++|+.+.+..-++.+... ..|--| |+. ...|+...+.+++.++.. +|.++--.+++.|...+ T Consensus 82 ~~~s~~el~~~v~~Qi~al~~~a~~~g~~l~hVKpH-GALYn~~~~D~~lA~ai~~ai~~~~~~l~l~~la~~~~~~~~~ 160 (252) T 2x5e_A 82 LACSAEEVHAMVLYQIGALDAFCRSLGTQVAYVKPH-GALYNDLVGDDELLRAVLDACAAYRKGLPLMVLALADNGRELE 160 (252) T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHTTCCCCEECCC-HHHHHHHTTCHHHHHHHHHHHHHHCTTCCEEEECCSCCHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHH T ss_conf 899999999999999999999999849910365313-9999999861999999999999858564278862476057888 Q ss_pred HHHHHCCCEEEEEEEECCC Q ss_conf 8987099469845886289 Q gi|254780558|r 313 LAPKLNLPYMVADLYLDDQ 331 (396) Q Consensus 313 ~A~~~gvp~~~~dvfLD~~ 331 (396) +|++.|+++.. .+|.|-. T Consensus 161 ~A~~~Gl~~~~-E~FADR~ 178 (252) T 2x5e_A 161 LADEADVPLLF-EAFADRA 178 (252) T ss_dssp HHHHHTCCEEE-EEESSBC T ss_pred HHHHCCCCEEE-EEEECCC T ss_conf 99977997368-9975365 No 22 >2e67_A Hypothetical protein TTHB029; NPPSFA, national project on protein structural and functional analyses, structural genomics; 2.90A {Thermus thermophilus HB8} Probab=67.13 E-value=5.8 Score=18.09 Aligned_cols=172 Identities=15% Similarity=0.080 Sum_probs=96.0 Q ss_pred EEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCC--CC---CCCCCCCCCC-- Q ss_conf 5899973778771688999983793508987089876899999999859929998176656--89---8778785544-- Q gi|254780558|r 172 RIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAF--DE---SYNEDDSYTL-- 244 (396) Q Consensus 172 riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~--~~---~~~~pGp~~L-- 244 (396) +|-|--||+|++... .+||.+. .--+.+++..+|..++ ..+-.|=||+=+-.- .| |-.+ .| .| T Consensus 14 ~Lii~ADDfG~s~~v-n~ai~~G-~vts~s~M~~~p~~~~------~~~l~vGlHl~Lt~~~p~~~~~p~~~-~p-sL~~ 83 (264) T 2e67_A 14 VLILHHDDLGLTHAQ-NGAYQAL-GLPTGSVMVPGAWASG------VKGEDLGVHLVLTSEWPAPRMRPLTE-GE-SLRD 83 (264) T ss_dssp EEEEEEEEETSCHHH-HHHHHHH-CCCEEEECTTSTTGGG------CCCTEEEEEECCCCCSSSSCCCCSSC-CG-GGCB T ss_pred EEEEECCCCCCCHHH-HHHHHHC-CEEEEEEEECCHHHHH------CCCCCCCEEEEECCCCCCCCCCCCCC-CC-CCCC T ss_conf 699965778899889-9999939-7004553027888996------52768743578458888778787223-66-5558 Q ss_pred ------------CCCCCHH----HHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC- Q ss_conf ------------6789989----99999999998558935980012300004989999999998506928997497632- Q gi|254780558|r 245 ------------KVTQTVQ----QLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPR- 307 (396) Q Consensus 245 ------------~~~~~~~----~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~- 307 (396) ....+.+ |++..++..++-+ +-.-+..||+.-+ .+...+.+++..+++|+.+....+... T Consensus 84 ~~G~F~~~~~~~~~~~~~~eV~~El~AQi~~f~~~i-~PsHiDsH~Hvh~--~P~v~~~~~~la~~y~lp~~~~~~~~~~ 160 (264) T 2e67_A 84 EAGYFPESLEALWRKARAEEVERELKAQIQAAAKLF-SPTHLDAHQGAVL--RPDLAEVYLRLAEAYRLVPLVPESLEGL 160 (264) T ss_dssp TTTBCCSSHHHHHHHCCHHHHHHHHHHHHHHHHTTS-CCCEEEEGGGGGG--SHHHHHHHHHHHHHTTCEECCBSCCTTS T ss_pred CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC-CCCEECCCCCHHC--CHHHHHHHHHHHHHHCCCEEECCCHHHC T ss_conf 888644669998733899999999999999999608-9973627531223--8689999999999839983403401320 Q ss_pred -------CHHHHHHHHHCCCEEEEEEEECCC-CCHHHHHHHHHHHHHHHHHCCEEEEEEECC Q ss_conf -------267898987099469845886289-999999999999999998719489998088 Q gi|254780558|r 308 -------NLTRVLAPKLNLPYMVADLYLDDQ-VDRDKIREKLKGLEEIARTTGQAIGVAVAF 361 (396) Q Consensus 308 -------Sva~~~A~~~gvp~~~~dvfLD~~-~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~ 361 (396) ............+. ..|.|.. .+.......+..+.. .+.|....++||- T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~--l~~G~~eim~HPg 217 (264) T 2e67_A 161 GVPPPFLPELERLLYETPFPQ---VRFLDPYGLPPEERLGFYLDLAH--LPPGLYYLVHHSA 217 (264) T ss_dssp CCCGGGHHHHHHHHHHCCSCC---BEEECCTTSCGGGHHHHHHHGGG--CCSEEEEEEECCC T ss_pred CCCHHHHHHHHHHHHHCCCCC---CEECCCCCCCCHHHHHHHHHHHC--CCCCCEEEEECCC T ss_conf 566467899998754213454---30034235671149999999961--8998679997999 No 23 >2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3- epimerase, D-tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima} Probab=63.42 E-value=6.8 Score=17.65 Aligned_cols=81 Identities=11% Similarity=0.076 Sum_probs=46.7 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH----HCCCC-EE--EEECCCCCCCCC Q ss_conf 899999999859929998176656898778785544678998999999999998----55893-59--800123000049 Q gi|254780558|r 209 LDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLR----RGTGY-FG--VMNYRGAMLLSN 281 (396) Q Consensus 209 ~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~----~~p~~-vG--vnNhmGs~~t~~ 281 (396) ..+.++.|+.-|-+++...+... ..+.+.++..+++...+. ....+ +. ..|++-..|..+ T Consensus 115 ~~~~i~~a~~lG~~~i~~~~~~~-------------~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~le~~~~~~~~~~~t 181 (290) T 2zvr_A 115 VVKHTEVAGMFGALVIIGLVRGR-------------REGRSYEETEELFIESMKRLLELTEHAKFVIEPLNRYETDFINT 181 (290) T ss_dssp HHHHHHHHHHHTCEEEESGGGCC-------------CTTSCHHHHHHHHHHHHHHHHHHCSSCCEEECCCCTTTCSSCCS T ss_pred HHHHHHHHHHCCCCEEEECCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEC T ss_conf 99999999973993799568988-------------88899999999999999999999775221485203535133303 Q ss_pred HHHHHHHHHHHHCCCCEE-EEC Q ss_conf 899999999985069289-974 Q gi|254780558|r 282 KESAEVIFKEFAKRGLLF-FDD 302 (396) Q Consensus 282 ~~~m~~vl~~l~~rgL~f-lDs 302 (396) ...+..+++.+...++.+ +|. T Consensus 182 ~~~~~~li~~v~~~~~g~~~D~ 203 (290) T 2zvr_A 182 IDDALRILRKINSNRVGILADT 203 (290) T ss_dssp HHHHHHHHHHHCCTTEEEEEEH T ss_pred HHHHHHHHHHHCCCCCCCCCCC T ss_conf 8889999998098446666671 No 24 >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Probab=61.63 E-value=7.3 Score=17.45 Aligned_cols=164 Identities=15% Similarity=0.110 Sum_probs=69.7 Q ss_pred HCCCCEEEECCCCCCCCCC---------CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH Q ss_conf 8599299981766568987---------7878554467899899999999999855893598001230000498999999 Q gi|254780558|r 218 KKGQEAILQIPMQAFDESY---------NEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVI 288 (396) Q Consensus 218 ~~G~EvllhlPMEp~~~~~---------~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~v 288 (396) ..|..|-++.+++-.++=. ...+ ..-...++.+++.+.+.++...- +..+.=.-|.-...+...+..+ T Consensus 46 ~~G~~v~~~~~I~~Sn~C~~~C~fC~~~~~~~-~~~~~~ls~eeI~~~~~~~~~~G--~~~i~l~~g~~~~~~~~~~~~~ 122 (348) T 3iix_A 46 YVGDEVHIRAIIEFSNVCRKNCLYCGLRRDNK-NLKRYRMTPEEIVERARLAVQFG--AKTIVLQSGEDPYXMPDVISDI 122 (348) T ss_dssp HHCSEEEEEEEEEEECCCSCCCTTCTTCTTCC-SSCCCBCCHHHHHHHHHHHHHTT--CSEEEEEESCCGGGTTHHHHHH T ss_pred HCCCEEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCHHHHHHH T ss_conf 78998899998886588899891499883699-97661589999999999999819--9289982588876648999999 Q ss_pred HHHHHCCCCEEEECC-CCCCCHHHHHHHHHCCCEEEEEEEECCCC--CHHHHH-----HHHHHHHHHHHHCCEEEE---- Q ss_conf 999850692899749-76322678989870994698458862899--999999-----999999999987194899---- Q gi|254780558|r 289 FKEFAKRGLLFFDDG-SSPRNLTRVLAPKLNLPYMVADLYLDDQV--DRDKIR-----EKLKGLEEIARTTGQAIG---- 356 (396) Q Consensus 289 l~~l~~rgL~flDs~-Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~--~~~~I~-----~qL~~l~~~Ar~~G~AI~---- 356 (396) ++.+++.++..--+. ....... ..-++.|+-... +.++... ....|. .+..+..+.+++.|.-+. T Consensus 123 i~~i~~~~~~i~~~~g~~~~e~l-~~L~~aG~~~~~--~~~et~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i 199 (348) T 3iix_A 123 VKEIKKMGVAVTLSLGEWPREYY-EKWKEAGADRYL--LRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSM 199 (348) T ss_dssp HHHHHTTSCEEEEECCCCCHHHH-HHHHHHTCCEEE--CCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBE T ss_pred HHHCCCCCEEEEECCCCCHHHHH-HHHHHHCCCEEE--ECHHHCCHHHEEECCCCCCCCHHHHHHHHHHHCCCEEEEEEE T ss_conf 87403332123202454308999-999982896798--563443402122011477731246776677624972788899 Q ss_pred EEECCHHHHHHHHHHHHHHHHCCCEEEEHHHH Q ss_conf 98088788999999975688769189967774 Q gi|254780558|r 357 VAVAFDESIEVISQWLQQEHVRDVSVVPLSCL 388 (396) Q Consensus 357 igh~~p~Ti~~L~~w~~~l~~~gi~lVpvS~l 388 (396) +|++. +|.+-+.+-+..++.-++..++++.+ T Consensus 200 ~Glpg-Et~ed~~~~l~~lr~l~~~~~~~~~f 230 (348) T 3iix_A 200 VGLPG-QTIDDLVDDLLFLKEHDFDMVGIGPF 230 (348) T ss_dssp ESCTT-CCHHHHHHHHHHHHHHTCSEECCEEC T ss_pred EECCC-CCHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 94599-99999999999997279988989866 No 25 >1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A Probab=59.65 E-value=7.9 Score=17.23 Aligned_cols=82 Identities=12% Similarity=0.183 Sum_probs=58.0 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 79350898708987689999999985992999817665689877878554467899899999999999855893598001 Q gi|254780558|r 194 LPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNY 273 (396) Q Consensus 194 LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNh 273 (396) |.+.|...|.|.+...+...+...++.++|.+.++ . .+..++.+.|..+..|--...-+.++ T Consensus 1 ~~~~i~v~fsP~~~~~~~i~~~I~~A~~~I~i~~y----~--------------~~~~~i~~aL~~a~~rGV~Vrvl~d~ 62 (155) T 1byr_A 1 VEPSVQVGYSPEGSARVLVLSAIDSAKTSIRMMAY----S--------------FTAPDIMKALVAAKKRGVDVKIVIDE 62 (155) T ss_dssp -CCEEEEEEETTTHHHHHHHHHHHHCSSEEEEEES----S--------------BCCHHHHHHHHHHHHTTCEEEEEEES T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCEEEEEEE----E--------------CCCHHHHHHHHHHHHCCCEEEEEEEE T ss_conf 99955899899974999999999960729999998----4--------------27889999999999859939999972 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCC Q ss_conf 230000498999999999850692 Q gi|254780558|r 274 RGAMLLSNKESAEVIFKEFAKRGL 297 (396) Q Consensus 274 mGs~~t~~~~~m~~vl~~l~~rgL 297 (396) .|+........ ++.|.+.|. T Consensus 63 ~~~~~~~~~~~----~~~l~~~gi 82 (155) T 1byr_A 63 RGNTGRASIAA----MNYIANSGI 82 (155) T ss_dssp TTCCSHHHHHH----HHHHHHTTC T ss_pred CCCCCCCCHHH----HHHHHHCCC T ss_conf 37532033999----999984588 No 26 >3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca} Probab=59.27 E-value=8 Score=17.19 Aligned_cols=69 Identities=10% Similarity=0.018 Sum_probs=35.0 Q ss_pred EEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 58999737787716889999837935089870898768999999998599299981766568987787855446789989 Q gi|254780558|r 172 RIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQ 251 (396) Q Consensus 172 riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~ 251 (396) ++|+||+==.|...........|+.++ +++....+.-+..|++|-+-+ + ...+.+ T Consensus 4 ~~AllIGin~~~~~~Y~~~~~~L~g~v--------nDa~~~~~~L~~~gf~v~~l~--------~---------~~aTr~ 58 (285) T 3bij_A 4 GIALALGLNAVDPKHYGGWAGKLNACE--------ADAEDMAAIAAERGFAVTTLM--------T---------KAATRA 58 (285) T ss_dssp EEEEEEECSCCCTTTTTTCCCCCSSHH--------HHHHHHHHHHHHTTCEEEEEE--------G---------GGCCHH T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCHH--------HHHHHHHHHHHHCCCCEEEEE--------C---------CCCCHH T ss_conf 679999506887434799741268828--------999999999998699759962--------6---------766799 Q ss_pred HHHHHHHHHHHHCC Q ss_conf 99999999998558 Q gi|254780558|r 252 QLLNRLRYSLRRGT 265 (396) Q Consensus 252 ~~~~~l~~~l~~~p 265 (396) .|++.|.|.+.++. T Consensus 59 ~i~~al~~l~~~~~ 72 (285) T 3bij_A 59 KVIDAIGKAAKALG 72 (285) T ss_dssp HHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHCC T ss_conf 99999999998588 No 27 >2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1 Probab=55.09 E-value=9.4 Score=16.75 Aligned_cols=96 Identities=16% Similarity=0.197 Sum_probs=64.2 Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-----------------CCCCCHHHHHHHHHHHHCCCCEEEECCCC Q ss_conf 4467899899999999999855893598001230-----------------00049899999999985069289974976 Q gi|254780558|r 243 TLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGA-----------------MLLSNKESAEVIFKEFAKRGLLFFDDGSS 305 (396) Q Consensus 243 ~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs-----------------~~t~~~~~m~~vl~~l~~rgL~flDs~Ts 305 (396) .+....+..++.+.|..+.. ...-+|+.+|..- ..-.++.-.+..+..+++.|.-.+=- T Consensus 85 VVeI~vs~~Dil~aL~~a~~-~~~kIavVgf~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~v~~l~~~G~~vVVG--- 160 (225) T 2pju_A 85 VILIKPSGYDVLQFLAKAGK-LTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVG--- 160 (225) T ss_dssp EEEECCCHHHHHHHHHHTTC-TTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEE--- T ss_pred EEEEECCHHHHHHHHHHHHH-HCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEC--- T ss_conf 89970787689999999997-58988999376403699999999699449999668899999999999869979998--- Q ss_pred CCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH Q ss_conf 322678989870994698458862899999999999999999987 Q gi|254780558|r 306 PRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIART 350 (396) Q Consensus 306 ~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~ 350 (396) .+++..+|+++|+++ +||- +.+.|++.|+++.++|+- T Consensus 161 -~~~~~~~A~~~Gl~~----vli~---SgeSI~~Ai~~Al~~ar~ 197 (225) T 2pju_A 161 -AGLITDLAEEAGMTG----IFIY---SAATVRQAFSDALDMTRM 197 (225) T ss_dssp -SHHHHHHHHHTTSEE----EESS---CHHHHHHHHHHHHHHHHH T ss_pred -CHHHHHHHHHCCCCE----EEEC---CHHHHHHHHHHHHHHHHH T ss_conf -858999999849978----9975---889999999999999999 No 28 >1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A Probab=54.64 E-value=9.5 Score=16.71 Aligned_cols=69 Identities=16% Similarity=0.068 Sum_probs=40.7 Q ss_pred CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC---CCCHHHHHHHH----HHHHHH------CCCCEEEEEC Q ss_conf 7689999999985992999817665689877878554467---89989999999----999985------5893598001 Q gi|254780558|r 207 NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKV---TQTVQQLLNRL----RYSLRR------GTGYFGVMNY 273 (396) Q Consensus 207 ~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~---~~~~~~~~~~l----~~~l~~------~p~~vGvnNh 273 (396) .+..+.+++|+++|..|||-+=--+. ..+|+.+.... +.+.++....+ ...+.+ .+.++-|+|- T Consensus 60 ~~~~~~~~~a~~~Gm~v~ldlH~sd~---Wadp~~q~~p~~w~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~vqigne 136 (334) T 1fob_A 60 DYNLELAKRVKAAGMSLYLDLHLSDT---WADPSDQTTPSGWSTTDLGTLKWQLYNYTLEVCNTFAENDIDIEIISIGNE 136 (334) T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSSS---CCBTTBCBCCTTSCSSCHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEESSS T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCC---CCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC T ss_conf 99999999999889989996477887---668666788620100340358999999999999999857998657982676 Q ss_pred CCCCC Q ss_conf 23000 Q gi|254780558|r 274 RGAML 278 (396) Q Consensus 274 mGs~~ 278 (396) .-..+ T Consensus 137 ~n~g~ 141 (334) T 1fob_A 137 IRAGL 141 (334) T ss_dssp GGGCS T ss_pred CCCCC T ss_conf 46664 No 29 >2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} Probab=45.52 E-value=13 Score=15.81 Aligned_cols=99 Identities=9% Similarity=0.140 Sum_probs=65.7 Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-----------------CCCCCHHHHHHHHHHHHCCCCEEEECCCC Q ss_conf 4467899899999999999855893598001230-----------------00049899999999985069289974976 Q gi|254780558|r 243 TLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGA-----------------MLLSNKESAEVIFKEFAKRGLLFFDDGSS 305 (396) Q Consensus 243 ~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs-----------------~~t~~~~~m~~vl~~l~~rgL~flDs~Ts 305 (396) .+....+..++.+.|..+... ..-+|+..|-.. ..-.++.-.+..+..+++.|.-.+=- T Consensus 73 VVeI~vs~~Dil~al~~a~~~-~~kiavvgf~~~~~~~~~i~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG--- 148 (196) T 2q5c_A 73 SISIKVTRFDTMRAVYNAKRF-GNELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKTENIKIVVS--- 148 (196) T ss_dssp EEEECCCHHHHHHHHHHHGGG-CSEEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHTTCCEEEE--- T ss_pred EEEECCCHHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEC--- T ss_conf 799807887999999999975-8978999678501589999998599559999668899999999999869989999--- Q ss_pred CCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 32267898987099469845886289999999999999999998719 Q gi|254780558|r 306 PRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTG 352 (396) Q Consensus 306 ~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G 352 (396) .+++..+|+++|+|+. || ..+.+.|++.|+++.++++-+- T Consensus 149 -~~~~~~~A~~~Gl~~i----li--~Sg~eSI~~Al~eA~~l~~~~~ 188 (196) T 2q5c_A 149 -GKTVTDEAIKQGLYGE----TI--NSGEESLRRAIEEALNLIEVRN 188 (196) T ss_dssp -CHHHHHHHHHTTCEEE----EC--CCCHHHHHHHHHHHHHHHHHHC T ss_pred -CHHHHHHHHHCCCCEE----EE--ECCHHHHHHHHHHHHHHHHHHH T ss_conf -8799999998599789----99--6549999999999999999885 No 30 >2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A* Probab=45.39 E-value=13 Score=15.80 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=10.6 Q ss_pred HHHHHHHHHHHHHHCCEEEEEE Q ss_conf 9999999999998719489998 Q gi|254780558|r 337 IREKLKGLEEIARTTGQAIGVA 358 (396) Q Consensus 337 I~~qL~~l~~~Ar~~G~AI~ig 358 (396) ....|.++..+|+++|..|++- T Consensus 131 ~~~~l~~~~~~A~~~gi~l~iE 152 (290) T 2qul_A 131 AIESVRRVIKVAEDYGIIYALE 152 (290) T ss_dssp HHHHHHTTHHHHHHHTCEEEEE T ss_pred HHHHHHHHHHHHHHHCCEEEEE T ss_conf 9999999999998515214656 No 31 >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Probab=45.00 E-value=9.7 Score=16.65 Aligned_cols=168 Identities=11% Similarity=0.146 Sum_probs=88.4 Q ss_pred EEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCC--EEEECCCCCCCCCCCCCCCCCCCCCCCHHH Q ss_conf 997377877168899998379350898708987689999999985992--999817665689877878554467899899 Q gi|254780558|r 175 IVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQE--AILQIPMQAFDESYNEDDSYTLKVTQTVQQ 252 (396) Q Consensus 175 IVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~E--vllhlPMEp~~~~~~~pGp~~L~~~~~~~~ 252 (396) |+=-|.|.+... .....+-...| .++..........-+++.+.|.. +-..+ .+|... +++ T Consensus 68 VLDiGCG~G~~a-~~~A~~~g~~v-~git~s~~q~~~a~~~~~~~~~~~~~~~~~----~d~~~~-~~~----------- 129 (287) T 1kpg_A 68 LLDVGCGWGATM-MRAVEKYDVNV-VGLTLSKNQANHVQQLVANSENLRSKRVLL----AGWEQF-DEP----------- 129 (287) T ss_dssp EEEETCTTSHHH-HHHHHHHCCEE-EEEESCHHHHHHHHHHHHTCCCCSCEEEEE----SCGGGC-CCC----------- T ss_pred EEEECCCHHHHH-HHHHHHCCCCE-EEEECCHHHHHHHHHHHHHHCCCCHHHHHH----HHHHHC-CCC----------- T ss_conf 999688525999-99999679846-999689999999999987614540157887----436641-377----------- Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHH-------HHHHHHHCCCEEEEE Q ss_conf 9999999998558935980012300004989999999998506928997497632267-------898987099469845 Q gi|254780558|r 253 LLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLT-------RVLAPKLNLPYMVAD 325 (396) Q Consensus 253 ~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva-------~~~A~~~gvp~~~~d 325 (396) +++ =-.+++..|||.+-- ...++.+-+.|+..|.++|.+-+...... ........+++..++ T Consensus 130 --------fD~-i~si~~~eh~~~~~~--~~~~~~~~r~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~k~ 198 (287) T 1kpg_A 130 --------VDR-IVSIGAFEHFGHERY--DAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTE 198 (287) T ss_dssp --------CSE-EEEESCGGGTCTTTH--HHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHH T ss_pred --------CCC-EEEEHHHHHCCHHHH--HHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHH T ss_conf --------640-555322775074779--999999997469997299999974683444321576433442154566322 Q ss_pred EEECCC-CCHHHHHHHHHHHHHHHHHCCEEEE-EEECCHHHHHHHHHHHHHHHHC Q ss_conf 886289-9999999999999999987194899-9808878899999997568876 Q gi|254780558|r 326 LYLDDQ-VDRDKIREKLKGLEEIARTTGQAIG-VAVAFDESIEVISQWLQQEHVR 378 (396) Q Consensus 326 vfLD~~-~~~~~I~~qL~~l~~~Ar~~G~AI~-igh~~p~Ti~~L~~w~~~l~~~ 378 (396) +|-... ++ +......+.+.|.-|- +-+-.......|..|...++++ T Consensus 199 ifpgg~lps-------l~~~~~~~~~aGf~v~~~~~~~~hY~~Tl~~W~~~f~~~ 246 (287) T 1kpg_A 199 IFPGGRLPS-------IPMVQECASANGFTVTRVQSLQPHYAKTLDLWSAALQAN 246 (287) T ss_dssp TSTTCCCCC-------HHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHHHHT T ss_pred CCCCCCCCC-------HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHH T ss_conf 168887897-------699999998628688653148676999999999999996 No 32 >1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1 Probab=44.45 E-value=14 Score=15.71 Aligned_cols=94 Identities=12% Similarity=0.108 Sum_probs=66.1 Q ss_pred HHHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEE Q ss_conf 89999999999985--5893598001230000498999999999850692899749763226789898709946984588 Q gi|254780558|r 250 VQQLLNRLRYSLRR--GTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLY 327 (396) Q Consensus 250 ~~~~~~~l~~~l~~--~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvf 327 (396) .++++..|...+.. -+...-...|- -+-.+...|+.++..+.+.|+-+.+..-.. ..-|-.....++. T Consensus 18 ~~en~eVl~~L~e~G~d~~~~~~IEH~--~~f~d~~~lek~a~~~~~~Gyev~~~ee~e--------~edg~~~~~~~~~ 87 (132) T 1nxi_A 18 KEETRDIIQALLEDGSDPDALYEIEHH--LFAEDFDKLEKAAVEAFKMGFEVLEAEETE--------DEDGNKLLCFDAT 87 (132) T ss_dssp HHHHHHHHHHHHHHTCCTTSCEEEEEE--EEESCHHHHHHHHHHHHHHTCCCBCCCCBC--------CSSCSSBEEEEEE T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEE--EEECCHHHHHHHHHHHHHCCCEECCCCCCC--------CCCCCEEEEEEEE T ss_conf 998999999999669985667566799--996998999999999998897870455344--------5799768999999 Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCE Q ss_conf 62899999999999999999987194 Q gi|254780558|r 328 LDDQVDRDKIREKLKGLEEIARTTGQ 353 (396) Q Consensus 328 LD~~~~~~~I~~qL~~l~~~Ar~~G~ 353 (396) .....+.+.|..+-.++..+|.+.|- T Consensus 88 ~e~~ld~e~I~~~~~~L~~LA~~~~g 113 (132) T 1nxi_A 88 MQSALDAKLIDEQVEKLVNLAEKFDI 113 (132) T ss_dssp EEECSCHHHHHHHHHHHHHHHHHHTC T ss_pred EECCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 96569999999999999999999691 No 33 >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A* Probab=43.88 E-value=14 Score=15.65 Aligned_cols=162 Identities=11% Similarity=0.061 Sum_probs=86.9 Q ss_pred ECCCCCHHHHHHHHHHCCC----CEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 0898768999999998599----299981766568987787855446789989999999999985589359800123000 Q gi|254780558|r 203 ASNGNSLDRWMKEAKKKGQ----EAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAML 278 (396) Q Consensus 203 ~P~~~~~~~~~~~Ar~~G~----EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~ 278 (396) .||.....+..+.-++-.. ++++ ||.+.+..+ ..+-+.+..+|+-.+..+-+-|.= +|.. T Consensus 204 ~p~~~~~~~~l~~l~~L~~~~~i~~I~-------------PgHGpv~~~-~~~~i~~y~~~~~~~~~~kv~Ivy--~S~~ 267 (404) T 2ohh_A 204 TPLSKLVLKKFDEVKELGLLERIQMIA-------------PSHGQIWTD-PMKIIEAYTGWATGMVDERVTVIY--DTMH 267 (404) T ss_dssp GGGHHHHHHHHHHHHHTTCGGGCSEEE-------------CSSSCBBSS-HHHHHHHHHHHHTTCCCSEEEEEE--CCSS T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCEEE-------------CCCCHHHCC-HHHHHHHHHHHHHCCCCCCEEEEE--ECCC T ss_conf 676899999999998664667863996-------------277027569-899999999861055576262898--5586 Q ss_pred CCCHHHHHHHHHHHHCCCCEE--EECC-CCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH--HHCCE Q ss_conf 049899999999985069289--9749-763226789898709946984588628999999999999999999--87194 Q gi|254780558|r 279 LSNKESAEVIFKEFAKRGLLF--FDDG-SSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIA--RTTGQ 353 (396) Q Consensus 279 t~~~~~m~~vl~~l~~rgL~f--lDs~-Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~A--r~~G~ 353 (396) -..+...+.+.+.++..|.-. ++-. +........+...-++-+..-..+ ++.. ..+...|+.+..+- +-+|. T Consensus 268 GnT~~~A~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~ii~Gspt~~-~~~~--~~~~~fl~~l~~~~~~~~~gK 344 (404) T 2ohh_A 268 GSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIY-DEPY--PSVGDLLMYLRGLKFNRTLTR 344 (404) T ss_dssp SHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCEET-TEEC--THHHHHHHHHHHHCGGGTCCE T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECCCCC-CCCC--HHHHHHHHHHHHHHHCCCCCC T ss_conf 5799999999998875798189999258897888999985795599636517-8468--899999999865764565798 Q ss_pred -EEEEEECCHHHHHHHHHHHHHHHHCCCEEEE Q ss_conf -8999808878899999997568876918996 Q gi|254780558|r 354 -AIGVAVAFDESIEVISQWLQQEHVRDVSVVP 384 (396) Q Consensus 354 -AI~igh~~p~Ti~~L~~w~~~l~~~gi~lVp 384 (396) +..+|+ |.-.=.++..|...|+..|+.+|. T Consensus 345 ~~~~Fgs-~g~~g~a~~~~~~~l~~~G~~vv~ 375 (404) T 2ohh_A 345 KALVFGS-MGGNGGATGTMKELLAEAGFDVAC 375 (404) T ss_dssp EEEEEEE-ESSSCCHHHHHHHHHHHTTEEEEE T ss_pred EEEEEEC-CCCCHHHHHHHHHHHHHCCCEEEC T ss_conf 6999990-488769999999999977998945 No 34 >2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima} Probab=43.36 E-value=4.2 Score=18.96 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=37.2 Q ss_pred HHHHHHHHHHHHHHHHCCEEEE--EEECCHH-----HHHHHHHHHHHHHHCCCEEEEHH Q ss_conf 9999999999999987194899--9808878-----89999999756887691899677 Q gi|254780558|r 335 DKIREKLKGLEEIARTTGQAIG--VAVAFDE-----SIEVISQWLQQEHVRDVSVVPLS 386 (396) Q Consensus 335 ~~I~~qL~~l~~~Ar~~G~AI~--igh~~p~-----Ti~~L~~w~~~l~~~gi~lVpvS 386 (396) ..+..++++|..+.|++|+.-- |-...|. +-+.|...+..|...||.+|--+ T Consensus 5 ~~~~~~ik~LI~~GK~~GylTy~eIn~~LP~~~~e~~~e~ie~i~~~L~~~gI~Vve~~ 63 (72) T 2k6x_A 5 PQIERRIKKLISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGINIVENE 63 (72) T ss_dssp HHHHHHHHHHHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCCCCBCCS T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEECCC T ss_conf 89999999999987526847599999876545441699999999999998799671389 No 35 >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} Probab=41.93 E-value=15 Score=15.46 Aligned_cols=132 Identities=11% Similarity=0.016 Sum_probs=70.5 Q ss_pred HHHHCCCCCEEEEE---CCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 99837935089870---898768999999998599299981766568987787855446789989999999999985589 Q gi|254780558|r 190 AINLLPANITLAFA---SNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTG 266 (396) Q Consensus 190 ai~~LP~~vT~A~~---P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~ 266 (396) ++......+-+... +......+..+.++..|..++... .+.++ +.++.+.-.. T Consensus 96 ~~~~~gad~i~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~v--------------------~t~~~----a~~a~~~Gad 151 (232) T 3igs_A 96 ALAQAGAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADC--------------------SSVDD----GLACQRLGAD 151 (232) T ss_dssp HHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEEC--------------------CSHHH----HHHHHHTTCS T ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEC--------------------CCHHH----HHHHHHCCCC T ss_conf 88873999999972348997899999999975498699986--------------------99999----9999968998 Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 3598001230000498999999999850692-899749763226789898709946984588628999999999999999 Q gi|254780558|r 267 YFGVMNYRGAMLLSNKESAEVIFKEFAKRGL-LFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLE 345 (396) Q Consensus 267 ~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL-~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~ 345 (396) ++|+||+-...+..+......+++.+...+. .+.+++=....-+ ..+.+.|.-....---| ...+.|.++|.++. T Consensus 152 ~Igv~~~~~~~~~~~~~~~~~l~~~~~~~~ipvia~GGI~t~~d~-~~~~~~GAd~V~vGsAi---~~~~~i~~~~~~ai 227 (232) T 3igs_A 152 IIGTTMSGYTTPDTPEEPDLPLVKALHDAGCRVIAEGRYNSPALA-AEAIRYGAWAVTVGSAI---TRLEHICGWYNDAL 227 (232) T ss_dssp EEECTTTTSSSSSCCSSCCHHHHHHHHHTTCCEEEESCCCSHHHH-HHHHHTTCSEEEECHHH---HCHHHHHHHHHHHH T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHH-HHHHHCCCCEEEECHHH---CCHHHHHHHHHHHH T ss_conf 899735778778767036788999973378239985898999999-99998699999989477---59099999999999 Q ss_pred HHHH Q ss_conf 9998 Q gi|254780558|r 346 EIAR 349 (396) Q Consensus 346 ~~Ar 349 (396) +.|+ T Consensus 228 ~~~~ 231 (232) T 3igs_A 228 KKAA 231 (232) T ss_dssp HHHH T ss_pred HHHC T ss_conf 9741 No 36 >2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus HB8} Probab=41.31 E-value=15 Score=15.40 Aligned_cols=57 Identities=16% Similarity=0.073 Sum_probs=25.9 Q ss_pred CCCCHHH-HHHHHHHHHHHHHHCC-EEEEEEECCH-HHHHHHHHHHHHHHHCCC-----EEEEHHHHH Q ss_conf 8999999-9999999999998719-4899980887-889999999756887691-----899677743 Q gi|254780558|r 330 DQVDRDK-IREKLKGLEEIARTTG-QAIGVAVAFD-ESIEVISQWLQQEHVRDV-----SVVPLSCLA 389 (396) Q Consensus 330 ~~~~~~~-I~~qL~~l~~~Ar~~G-~AI~igh~~p-~Ti~~L~~w~~~l~~~gi-----~lVpvS~l~ 389 (396) -.++... +.+-++.+.+...... .-+.|.|.-. +.... +..++...++ .+.++|..+ T Consensus 200 k~Rg~kka~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~i~p~i 264 (280) T 2dt8_A 200 RARGEKKAREEILKAFRAWAEGRKRIRAYFLYSGDEDAVAA---LRQEVLASGLPVEEALVNELGAVI 264 (280) T ss_dssp EESSHHHHHHHHHHHHHHHHTTCSCEEEEEEESSCTHHHHH---HHHHHHHSSSCEEEEEEEECCHHH T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH---HHHHHHHHCCCCCEEEEEEECCEE T ss_conf 14669999999999999873388870899997899899999---999998733998749999978699 No 37 >1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A* Probab=40.36 E-value=16 Score=15.31 Aligned_cols=11 Identities=18% Similarity=0.003 Sum_probs=3.6 Q ss_pred HHHHCCCCEEE Q ss_conf 99855893598 Q gi|254780558|r 260 SLRRGTGYFGV 270 (396) Q Consensus 260 ~l~~~p~~vGv 270 (396) .++..+.+|=+ T Consensus 187 l~~~G~~~Vli 197 (288) T 1jxh_A 187 LLAMGCEAVLM 197 (288) T ss_dssp HHHTTCSEEEE T ss_pred HHHCCCCEEEE T ss_conf 97667977997 No 38 >1q1g_A Uridine phosphorylase putative; transition state complex, transferase; HET: MTI; 2.02A {Plasmodium falciparum 3D7} SCOP: c.56.2.1 PDB: 1nw4_A* 3fow_A* Probab=38.88 E-value=14 Score=15.67 Aligned_cols=77 Identities=9% Similarity=0.013 Sum_probs=50.5 Q ss_pred HHHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEE Q ss_conf 89999999999985--5893598001230000498999999999850692899749763226789898709946984588 Q gi|254780558|r 250 VQQLLNRLRYSLRR--GTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLY 327 (396) Q Consensus 250 ~~~~~~~l~~~l~~--~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvf 327 (396) ..++.+.|..+... ++..+|+. +.+..|-.+.. +...++.+++.|-.-+|=-++. ...+|...|++++..-.. T Consensus 133 d~~l~~~l~~aa~~~~~~~~~G~v-~T~D~FY~~~~-~~~~~~~~~~~g~~avEMEsAa---l~~va~~~gv~a~ail~V 207 (276) T 1q1g_A 133 DFDVYDTLNKCAQELNVPVFNGIS-VSSDMYYPNKI-IPSRLEDYSKANAAVVEMELAT---LMVIGTLRKVKTGGILIV 207 (276) T ss_dssp CHHHHHHHHHHHHHTTCCCEEEEE-EEESCSSCCSS-SCCSHHHHHHTTCCEEESSHHH---HHHHHHHHTCEEEEEEEE T ss_pred CHHHHHHHHHHHHHCCCCCEEEEE-EECCCCCCCCC-CHHHHHHHHHCCCCEEECCHHH---HHHHHHHCCCCEEEEEEE T ss_conf 999999999999981998426545-34775637854-2489999997499767134999---999999859809999999 Q ss_pred ECCC Q ss_conf 6289 Q gi|254780558|r 328 LDDQ 331 (396) Q Consensus 328 LD~~ 331 (396) -|+. T Consensus 208 sd~~ 211 (276) T 1q1g_A 208 DGCP 211 (276) T ss_dssp CBCG T ss_pred ECCC T ss_conf 6876 No 39 >1qgo_A CBIK protein, anaerobic cobalamine biosynthetic cobalt chelatase; vitamin B12, metal ION chelation, cobalt precorrin; 2.40A {Salmonella typhimurium LT2} SCOP: c.92.1.2 Probab=37.04 E-value=18 Score=14.98 Aligned_cols=186 Identities=14% Similarity=0.241 Sum_probs=105.3 Q ss_pred EEEEEECCCCCCCHHHHH-HHH--------HCC-CCCEEEEE-------------CCCCCHHHHHHHHHHCCCCEEEECC Q ss_conf 589997377877168899-998--------379-35089870-------------8987689999999985992999817 Q gi|254780558|r 172 RIAIVVSGLGISQTGTQR-AIN--------LLP-ANITLAFA-------------SNGNSLDRWMKEAKKKGQEAILQIP 228 (396) Q Consensus 172 riAIVIddlG~~~~~~~~-ai~--------~LP-~~vT~A~~-------------P~~~~~~~~~~~Ar~~G~EvllhlP 228 (396) +-||++-.+|-+...+.+ +|. .+| .+|-+||+ =..|+..+..+...++|++-++=+| T Consensus 2 k~aillv~~GS~~~~~~~~~i~~~~~~v~~~~pd~~V~~af~s~~i~~~l~~~~~~~~p~~~~al~~l~~~G~~~i~V~P 81 (264) T 1qgo_A 2 KKALLVVSFGTSYHDTCEKNIVACERDLAASCPDRDLFRAFTSGMIIRKLRQRDGIDIDTPLQALQKLAAQGYQDVAIQS 81 (264) T ss_dssp CEEEEEEECCCSCHHHHHHHHHHHHHHHHHTCTTSEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHTTCCEEEEEE T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEE T ss_conf 85799997899965779999999999999888899189775004888887651477799999999999977997799987 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCC--------CCEEE Q ss_conf 6656898778785544678998999999999998558935980012300004989999999998506--------92899 Q gi|254780558|r 229 MQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKR--------GLLFF 300 (396) Q Consensus 229 MEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~r--------gL~fl 300 (396) += |..+..-+++.+.+...-.+++... .|.-+..+..-...+++.+... .+.|+ T Consensus 82 l~-------------l~~G~~~~di~~~~~~~~~~~~~i~-----~~~pll~~~~~~~~~~~~l~~~~~~~~~~~~lllv 143 (264) T 1qgo_A 82 LH-------------IINGDEYEKIVREVQLLRPLFTRLT-----LGVPLLSSHNDYVQLMQALRQQMPSLRQTEKVVFM 143 (264) T ss_dssp CC-------------SBCSHHHHHHHHHHHHHGGGSSEEE-----ECCCSBSSHHHHHHHHHHHHTTCCCCCTTEEEEEE T ss_pred EE-------------CCCCCHHHHHHHHHHHHHHHCCCEE-----EECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE T ss_conf 40-------------3463259999999998775379469-----83577999899999999999844556888579999 Q ss_pred ECCCCCCCHH-----HHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCE-EEEEEECC---H--HHHHHH- Q ss_conf 7497632267-----8989870994698458862899999999999999999987194-89998088---7--889999- Q gi|254780558|r 301 DDGSSPRNLT-----RVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQ-AIGVAVAF---D--ESIEVI- 368 (396) Q Consensus 301 Ds~Ts~~Sva-----~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~-AI~igh~~---p--~Ti~~L- 368 (396) .-+++..+.. ....++.+.+... -|++..++.+...++|.+ +|. -|.+ .|+ + .+..-+ T Consensus 144 gHGs~~~~~~~~~~~~~~l~~~~~~v~v--~~~~~~P~~~~~l~~l~~-------~g~~~v~v-~P~fl~~G~h~~~Di~ 213 (264) T 1qgo_A 144 GHGASHHAFAAYACLDHMMTAQRFPARV--GAVESYPEVDILIDSLRD-------EGVTGVHL-MPLMLVAGDHAINDMA 213 (264) T ss_dssp ECCCSHHHHHHHHHHHHHHHHHTCSEEE--EETTSSSCHHHHHHHHHH-------HTCCEEEE-EECSSSCCHHHHTTTT T ss_pred ECCCCCHHHHHHHHHHHHHHHCCCCEEE--EEEEECCCHHHHHHHHHH-------CCCCEEEE-EECEECCCCCHHHHHH T ss_conf 5799734258999999999963898599--998506988999999874-------57987999-9780025733232010 Q ss_pred ----HHHHHHHHHCCCEEEEH Q ss_conf ----99975688769189967 Q gi|254780558|r 369 ----SQWLQQEHVRDVSVVPL 385 (396) Q Consensus 369 ----~~w~~~l~~~gi~lVpv 385 (396) ..|-..+.+.|++..++ T Consensus 214 ~~~~~s~~~~l~~~g~~~~~~ 234 (264) T 1qgo_A 214 SDDGDSWKMRFNAAGIPATPW 234 (264) T ss_dssp SSSTTSHHHHHHHTTCCEEEC T ss_pred HHHHHHHHHHHHHCCCEEEEE T ss_conf 011479999888759846441 No 40 >2b94_A Purine nucleoside phosphorylase; SGPP, structural genomics, PSI, protein structure initiative, PNP, UDP, ontario/toronto SGC; 1.85A {Plasmodium knowlesi} PDB: 3emv_A 1sq6_A 2bsx_A* 3enz_A* Probab=33.88 E-value=20 Score=14.67 Aligned_cols=78 Identities=6% Similarity=0.025 Sum_probs=47.9 Q ss_pred CHHHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEE Q ss_conf 989999999999985--589359800123000049899999999985069289974976322678989870994698458 Q gi|254780558|r 249 TVQQLLNRLRYSLRR--GTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADL 326 (396) Q Consensus 249 ~~~~~~~~l~~~l~~--~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dv 326 (396) .+.++.+.+..++.. ++..+|++ ..+..|-.+. .....++.+++.|..-+|=-++. ...+|...|++++..-. T Consensus 153 ad~~l~~~l~~~a~~~~~~~~~G~i-~S~D~FY~~~-~~~~~~~~~~~~gv~~vEMEsAa---l~~va~~~gv~a~~i~~ 227 (267) T 2b94_A 153 ADFEVYDTLNKVAQELEVPVFNGIS-LSSDLYYPHK-IIPTRLEDYSKANVAVVEMEVAT---LMVMGTLRKVKTGGIFI 227 (267) T ss_dssp CCHHHHHHHHHHHHHTTCCCEEEEE-EEESSHHHHC-CCCTTHHHHHHTTCCEEESSHHH---HHHHHHHHTCEEEEEEE T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEE-EECCCCCCCC-CCHHHHHHHHHCCCHHHHHHHHH---HHHHHHHCCCCEEEEEE T ss_conf 9999999999999982998401127-6457664776-42459999987175002257899---99999985998899999 Q ss_pred EECCC Q ss_conf 86289 Q gi|254780558|r 327 YLDDQ 331 (396) Q Consensus 327 fLD~~ 331 (396) ..|+. T Consensus 228 Vsd~~ 232 (267) T 2b94_A 228 VDGCP 232 (267) T ss_dssp EEECG T ss_pred EECCC T ss_conf 97776 No 41 >3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Parabacteroides distasonis} Probab=32.24 E-value=21 Score=14.50 Aligned_cols=47 Identities=9% Similarity=-0.032 Sum_probs=25.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCEEEEE-EECCH-HHHHHHHHHHHHHHHCCC Q ss_conf 8999999999999999999871948999-80887-889999999756887691 Q gi|254780558|r 330 DQVDRDKIREKLKGLEEIARTTGQAIGV-AVAFD-ESIEVISQWLQQEHVRDV 380 (396) Q Consensus 330 ~~~~~~~I~~qL~~l~~~Ar~~G~AI~i-gh~~p-~Ti~~L~~w~~~l~~~gi 380 (396) ...|...|.+.|.+ ..=+|+.|-+ ...++ ..++.+++-+.-|++.|+ T Consensus 255 G~id~~~i~~~L~~----~gy~G~~ve~e~~~~~~d~~e~~~~s~~~L~~a~~ 303 (305) T 3obe_A 255 GMMNFPNIFKKAYE----IGILGYYVELEGDKKGRTQFEGVEKSAAYLQAAPF 303 (305) T ss_dssp SSBCHHHHHHHHHH----HTCCEEEECCCCCSSSCCHHHHHHHHHHHHHHCTT T ss_pred CCCCHHHHHHHHHH----CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 65189999999998----29987999995278889999999999999985899 No 42 >2q02_A Putative cytoplasmic protein; NP_463296.1, structural genomics, joint center for structural genomics, JCSG; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4 Probab=31.67 E-value=22 Score=14.44 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=4.2 Q ss_pred HHHHHHHCCCCE Q ss_conf 999999859929 Q gi|254780558|r 212 WMKEAKKKGQEA 223 (396) Q Consensus 212 ~~~~Ar~~G~Ev 223 (396) +++.|+.-|-+. T Consensus 90 ~i~~A~~lG~~~ 101 (272) T 2q02_A 90 LLRDAQGVGARA 101 (272) T ss_dssp HHHHHHHHTCSE T ss_pred HHHHHHHCCCCE T ss_conf 999999809997 No 43 >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 Probab=31.67 E-value=22 Score=14.44 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=59.7 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHH------HHHHHHHC Q ss_conf 678998999999999998558935980012300004989999999998506928997497632267------89898709 Q gi|254780558|r 245 KVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLT------RVLAPKLN 318 (396) Q Consensus 245 ~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva------~~~A~~~g 318 (396) ...|+.+++..|+...+..++....-++. ....+..........+.....+|+.+.....++- ....+..+ T Consensus 278 s~E~~~~~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~~~~~~ 354 (503) T 1q57_A 278 MLEESVEETAEDLIGLHNRVRLRQSDSLK---REIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLG 354 (503) T ss_dssp ESSSCHHHHHHHHHHHHTTSCCTTCHHHH---HHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTC T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHCCCCC---CHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCC T ss_conf 54578999999999998599834401331---004689999999998751362124326653238899999999998369 Q ss_pred CCEEEEEEEECCC---------CC-HHHHHHHHHHHHHHHHHCCEEEE-EEECCH Q ss_conf 9469845886289---------99-99999999999999987194899-980887 Q gi|254780558|r 319 LPYMVADLYLDDQ---------VD-RDKIREKLKGLEEIARTTGQAIG-VAVAFD 362 (396) Q Consensus 319 vp~~~~dvfLD~~---------~~-~~~I~~qL~~l~~~Ar~~G~AI~-igh~~p 362 (396) +. -+|||.- .+ ...+..-+.++..+|++.+..|. +.|+.. T Consensus 355 ~~----~vvID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lA~~~~v~Vi~vahlnr 405 (503) T 1q57_A 355 CD----VIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKN 405 (503) T ss_dssp CS----EEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCC T ss_pred CE----EEEECHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCC T ss_conf 54----8997124302577754127889999999999999983974999953574 No 44 >1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A* Probab=31.36 E-value=4.2 Score=18.95 Aligned_cols=106 Identities=9% Similarity=0.048 Sum_probs=61.0 Q ss_pred CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH Q ss_conf 68999999998599299981766568987787855446789989999999999985589359800123000049899999 Q gi|254780558|r 208 SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEV 287 (396) Q Consensus 208 ~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~ 287 (396) ...-.+...|..|+||.- |-.+.+.+++.+ .+...-|.++|+...|++. ...++. T Consensus 19 G~~~va~~l~~~G~~V~~------------------LG~~~p~e~iv~---~~~~~~~d~V~iS~~~~~~----~~~~~~ 73 (137) T 1ccw_A 19 GNKILDHAFTNAGFNVVN------------------IGVLSPQELFIK---AAIETKADAILVSSLYGQG----EIDCKG 73 (137) T ss_dssp HHHHHHHHHHHTTCEEEE------------------EEEEECHHHHHH---HHHHHTCSEEEEEECSSTH----HHHHTT T ss_pred HHHHHHHHHHHCCCEEEE------------------CCCCCCHHHHHH---HHHHHCCCEEEEEECCCCC----HHHHHH T ss_conf 999999999987987997------------------786669999999---9998399878876113445----577999 Q ss_pred HHHHHHCCCC----EEEECCCC-CCCHHHHHH---HHHCCCEEEEEEEECCCCCHHHHHHHHHH Q ss_conf 9999850692----89974976-322678989---87099469845886289999999999999 Q gi|254780558|r 288 IFKEFAKRGL----LFFDDGSS-PRNLTRVLA---PKLNLPYMVADLYLDDQVDRDKIREKLKG 343 (396) Q Consensus 288 vl~~l~~rgL----~flDs~Ts-~~Sva~~~A---~~~gvp~~~~dvfLD~~~~~~~I~~qL~~ 343 (396) +++.|+++|+ .|+--.-. ......... ++.| .|.+++.....+.+...+.+ T Consensus 74 ~i~~L~~~~~~~v~iivGG~~~~~~~~~~~~~~~l~~~G-----~~~vf~~gt~~~~~~~~i~~ 132 (137) T 1ccw_A 74 LRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDMG-----YDRVYAPGTPPEVGIADLKK 132 (137) T ss_dssp HHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHTT-----CSEECCTTCCHHHHHHHHHH T ss_pred HHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCC-----CCEEECCCCCHHHHHHHHHH T ss_conf 999999749999979997887887444188999999759-----88897998899999999999 No 45 >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Probab=30.59 E-value=23 Score=14.32 Aligned_cols=95 Identities=15% Similarity=0.234 Sum_probs=57.7 Q ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCCCH--HH----HHHHHHCCCEEEE-EEEECCC---CCHHHHHHHHHHHHHHH Q ss_conf 0498999999999850692899749763226--78----9898709946984-5886289---99999999999999999 Q gi|254780558|r 279 LSNKESAEVIFKEFAKRGLLFFDDGSSPRNL--TR----VLAPKLNLPYMVA-DLYLDDQ---VDRDKIREKLKGLEEIA 348 (396) Q Consensus 279 t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sv--a~----~~A~~~gvp~~~~-dvfLD~~---~~~~~I~~qL~~l~~~A 348 (396) ..+.......++.|..-||.|+--+-.+.+. .+ .+|+.+....-.. =++||.- .|...+.+-++.+.++. T Consensus 701 f~~~~~i~~~l~~L~~vGL~yl~lgq~~~tLSGGE~QRv~LA~~L~~~p~~~~llILDEPTsGLD~~~~~~l~~lL~~L~ 780 (842) T 2vf7_A 701 FADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLV 780 (842) T ss_dssp TTTSHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHH T ss_pred HHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH T ss_conf 51146788999999972986333689588888799999999999973888996899979967888999999999999999 Q ss_pred HHCCEEEEEEECCHHHHHHHHHHHHHH Q ss_conf 871948999808878899999997568 Q gi|254780558|r 349 RTTGQAIGVAVAFDESIEVISQWLQQE 375 (396) Q Consensus 349 r~~G~AI~igh~~p~Ti~~L~~w~~~l 375 (396) .+.-+.|.|-|-. +.++ ...|+-.+ T Consensus 781 ~~G~TvivItHdl-~~v~-~ADriivm 805 (842) T 2vf7_A 781 DAGNTVIAVEHKM-QVVA-ASDWVLDI 805 (842) T ss_dssp HTTCEEEEECCCH-HHHT-TCSEEEEE T ss_pred HCCCEEEEEECCH-HHHH-HCCEEEEC T ss_conf 7799899992799-9997-59999986 No 46 >3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structural genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis} Probab=30.16 E-value=23 Score=14.28 Aligned_cols=48 Identities=15% Similarity=0.211 Sum_probs=32.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEE Q ss_conf 2899999999999999999987194899980887889999999756887691899 Q gi|254780558|r 329 DDQVDRDKIREKLKGLEEIARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVSVV 383 (396) Q Consensus 329 D~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p~Ti~~L~~w~~~l~~~gi~lV 383 (396) |...|-..|.+.|. ..+..+.+-.-...-.+.+.+.+..+..+.++++ T Consensus 231 ~G~id~~~~~~~L~-------~~~g~~slE~~~~~~~~~~~~~~~~l~~~~l~~~ 278 (286) T 3dx5_A 231 EGIVNYDEIIQEVR-------DTDHFASLEWFGHNAKDILKAEMKVLTNRNLEVV 278 (286) T ss_dssp GSSSCHHHHHHHHT-------TSSCEEEECCCSSCHHHHHHHHHHHHHHCC---- T ss_pred CCCCCHHHHHHHHH-------CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 71358999999987-------8997699998589857889999999998688998 No 47 >2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic degradation; 1.60A {Escherichia coli} PDB: 2v5k_A Probab=29.74 E-value=24 Score=14.23 Aligned_cols=87 Identities=13% Similarity=0.189 Sum_probs=60.9 Q ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEE Q ss_conf 04989999999998506928997497632267898987099469845886289999999999999999998719489998 Q gi|254780558|r 279 LSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVA 358 (396) Q Consensus 279 t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~ig 358 (396) -.+..+++-+=+.++-.|+-.+==+ ...++..+|+|- +.+...+...+++..+.++++|...||- T Consensus 173 IEt~eavenldeI~av~GvD~i~iG------P~DLS~slG~pg---------~~~~p~v~~ai~~v~~~~~~~gk~~G~~ 237 (287) T 2v5j_A 173 IETREAMKNLPQILDVEGVDGVFIG------PADLSADMGYAG---------NPQHPEVQAAIEQAIVQIRESGKAPGIL 237 (287) T ss_dssp ECSHHHHHTHHHHHTSTTEEEEEEC------HHHHHHHTTSTT---------CCCSHHHHHHHHHHHHHHHHTTSEEEEE T ss_pred CCCHHHHHHHHHHHCCCCCCEEEEC------HHHHHHHCCCCC---------CCCCHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 2559999989998644788769989------288875317888---------9998789999999999999859952475 Q ss_pred ECCHHHHHHHHHHHHHHHHCCCEEEEHHH Q ss_conf 08878899999997568876918996777 Q gi|254780558|r 359 VAFDESIEVISQWLQQEHVRDVSVVPLSC 387 (396) Q Consensus 359 h~~p~Ti~~L~~w~~~l~~~gi~lVpvS~ 387 (396) .. +.+.+++|+. +|+.++-++. T Consensus 238 ~~---~~~~~~~~~~----~G~~~i~~g~ 259 (287) T 2v5j_A 238 IA---NEQLAKRYLE----LGALFVAVGV 259 (287) T ss_dssp CC---CHHHHHHHHH----TTCSEEEEEE T ss_pred CC---CHHHHHHHHH----CCCCEEEEHH T ss_conf 79---9999999998----3998999758 No 48 >2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, degradation of homoprotocatechuate, class II aldolase; 1.39A {Escherichia coli} PDB: 2vwt_A Probab=29.55 E-value=24 Score=14.21 Aligned_cols=87 Identities=14% Similarity=0.140 Sum_probs=60.5 Q ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEE Q ss_conf 04989999999998506928997497632267898987099469845886289999999999999999998719489998 Q gi|254780558|r 279 LSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVA 358 (396) Q Consensus 279 t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~ig 358 (396) -.+..+++.+=+.++--|+-.+== -...++..+|+|- +.+...+...+++..+.++++|...||. T Consensus 152 IEt~~av~nleeI~av~GvD~i~i------Gp~DLS~slG~pg---------~~~~p~v~~ai~~v~~~~~~~gk~~G~~ 216 (267) T 2vws_A 152 VESKTALDNLDEILDVEGIDGVFI------GPADLSASLGYPD---------NAGHPEVQRIIETSIRRIRAAGKAAGFL 216 (267) T ss_dssp CCSHHHHHTHHHHHTSTTCCEEEE------CHHHHHHHTTCSS---------SCCTHHHHHHHHHHHHHHHHTTCEEEEE T ss_pred CCCHHHHHHHHHHHCCCCCCEEEE------CCHHHHHHCCCCC---------CCCCHHHHHHHHHHHHHHHHCCCCEEEC T ss_conf 266999997998745689853567------8077887339998---------8998368999999999999869976663 Q ss_pred ECCHHHHHHHHHHHHHHHHCCCEEEEHHH Q ss_conf 08878899999997568876918996777 Q gi|254780558|r 359 VAFDESIEVISQWLQQEHVRDVSVVPLSC 387 (396) Q Consensus 359 h~~p~Ti~~L~~w~~~l~~~gi~lVpvS~ 387 (396) ..-++ -+++|. ++|+.++-++. T Consensus 217 ~~~~~---~~~~~~----~~G~~~~~~g~ 238 (267) T 2vws_A 217 AVAPD---MAQQCL----AWGANFVAVGV 238 (267) T ss_dssp CSSHH---HHHHHH----HTTCCEEEEEE T ss_pred CCCHH---HHHHHH----HCCCCEEEEHH T ss_conf 79999---999999----74999999628 No 49 >1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A Probab=28.27 E-value=25 Score=14.07 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=38.7 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEE Q ss_conf 30000498999999999850692899749763226789898709946984 Q gi|254780558|r 275 GAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVA 324 (396) Q Consensus 275 Gs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~ 324 (396) |+-+.++.-.=..++..-.++=.+|+...-+..|-+.-+|+.+|+|+... T Consensus 155 ~~ILVa~~LtPsd~~~l~~~~v~Givt~~GG~tSH~AIlARslgIPavvG 204 (258) T 1zym_A 155 EVILVAADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVG 204 (258) T ss_dssp CEEEECSCCCHHHHHHSCGGGEEEEECSCCCSSSHHHHHHHHHTCCEECC T ss_pred CEEEEECCCCHHHHHHCCHHHEEEEEECCCCCCCHHHHHHHHCCCCEEEE T ss_conf 87999707985777543600426788616997769999999849987984 No 50 >3egl_A DEGV family protein; alpha-beta-alpha sandwich, methylated lysines, structural genomics, PSI-2; HET: MLY MSE PLM; 2.41A {Corynebacterium glutamicum atcc 13032} Probab=26.44 E-value=27 Score=13.87 Aligned_cols=79 Identities=10% Similarity=0.002 Sum_probs=43.2 Q ss_pred HHHHHHHCC-CEEEE----EEEECCCCCHHHHHHH-HHHHHHHHHHCCEEEEEEECC-HHHHHHHHHHHHHHHHCC--CE Q ss_conf 898987099-46984----5886289999999999-999999998719489998088-788999999975688769--18 Q gi|254780558|r 311 RVLAPKLNL-PYMVA----DLYLDDQVDRDKIREK-LKGLEEIARTTGQAIGVAVAF-DESIEVISQWLQQEHVRD--VS 381 (396) Q Consensus 311 ~~~A~~~gv-p~~~~----dvfLD~~~~~~~I~~q-L~~l~~~Ar~~G~AI~igh~~-p~Ti~~L~~w~~~l~~~g--i~ 381 (396) ..++.-+++ |...- -..++..++.....++ ++.++.....+..-|.|+|.. ++..+.|++.+.+.-..+ +. T Consensus 160 a~ig~lL~IKPIl~~~~G~i~~~~k~R~~kka~~~li~~~~~~~~~~~~~i~i~~~~~~e~a~~l~~~l~~~~~~~~~i~ 239 (277) T 3egl_A 160 AMVSTALATRPIMRFNGGRMEIAAXTRTQSXAFAXLVELAQIRADGEPVFIAIGQNEAREAAXQLEELLRNALPEGSSFM 239 (277) T ss_dssp CSSGGGGCSSCEEEEETTEEEEEECCCSHHHHHHHHHHHHHHHHTTSCCEEEEEEESCHHHHHHHHHHHHHHSCTTCEEE T ss_pred HHHHHHHCCEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEE T ss_conf 99987528569999979989995530568999999999999860799679999918998999999999998669987499 Q ss_pred EEEHHHHH Q ss_conf 99677743 Q gi|254780558|r 382 VVPLSCLA 389 (396) Q Consensus 382 lVpvS~l~ 389 (396) ..+++..+ T Consensus 240 ~~~~gp~i 247 (277) T 3egl_A 240 SVDIDPTL 247 (277) T ss_dssp EEECCHHH T ss_pred EEEECCEE T ss_conf 99878599 No 51 >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Probab=25.93 E-value=27 Score=13.81 Aligned_cols=170 Identities=9% Similarity=0.126 Sum_probs=96.4 Q ss_pred EEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 99973778771688999983793508987089876899999999859929998176656898778785544678998999 Q gi|254780558|r 174 AIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQL 253 (396) Q Consensus 174 AIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~ 253 (396) -|.=-|.|.+.. ...+..+.+..|| ++..........-+++++.|.+..++.=.+ +|... .|+ T Consensus 75 rVLDiGCGwG~~-a~~~a~~~g~~v~-gitlS~~Q~~~a~~~~~~~gl~~~v~~~~~--d~~~~-~~~------------ 137 (302) T 3hem_A 75 TLLDIGCGWGST-MRHAVAEYDVNVI-GLTLSENQYAHDKAMFDEVDSPRRKEVRIQ--GWEEF-DEP------------ 137 (302) T ss_dssp EEEEETCTTSHH-HHHHHHHHCCEEE-EEECCHHHHHHHHHHHHHSCCSSCEEEEEC--CGGGC-CCC------------ T ss_pred EEEEECCCCCHH-HHHHHHHCCCEEE-EEECCHHHHHHHHHHHHHHHCCHHHHHHHC--CCCCC-CCC------------ T ss_conf 898857885399-9999998698389-983778899999999987400212334440--43234-788------------ Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCC-----CHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHC---------- Q ss_conf 999999998558935980012300004-----98999999999850692899749763226789898709---------- Q gi|254780558|r 254 LNRLRYSLRRGTGYFGVMNYRGAMLLS-----NKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLN---------- 318 (396) Q Consensus 254 ~~~l~~~l~~~p~~vGvnNhmGs~~t~-----~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~g---------- 318 (396) +++ --.+|+..||+.+... -+..++.+-+.|+.-|.+|+..-+.++.. -+...+ T Consensus 138 -------fD~-ivSie~~EHv~~~~~~~~~~~~~~~f~~i~~~LkPgG~~~l~~i~~~~~~---~~~~~~~~~~~~~~~~ 206 (302) T 3hem_A 138 -------VDR-IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKE---EAQELGLTSPMSLLRF 206 (302) T ss_dssp -------CSE-EEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHH---HHHHHTCCCCHHHHHH T ss_pred -------CCE-EEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCH---HHHHCCCCCHHHHHCC T ss_conf -------675-53115688731221012688999999999985699874999999457821---2110367886775333 Q ss_pred CCEEEEEEEECCC-CCHHHHHHHHHHHHHHHHHCCEEEE-EEECCHHHHHHHHHHHHHHHHC Q ss_conf 9469845886289-9999999999999999987194899-9808878899999997568876 Q gi|254780558|r 319 LPYMVADLYLDDQ-VDRDKIREKLKGLEEIARTTGQAIG-VAVAFDESIEVISQWLQQEHVR 378 (396) Q Consensus 319 vp~~~~dvfLD~~-~~~~~I~~qL~~l~~~Ar~~G~AI~-igh~~p~Ti~~L~~w~~~l~~~ 378 (396) .++..+.+|-... ++. .++...+.+.|.-|- +-...+.-...|..|...++++ T Consensus 207 ~~fi~kyiFpgg~lps~-------~~~~~~~~~~gf~v~~~~~~g~hY~~Tl~~W~~~~~~~ 261 (302) T 3hem_A 207 IKFILTEIFPGGRLPRI-------SQVDYYSSNAGWKVERYHRIGANYVPTLNAWADALQAH 261 (302) T ss_dssp HHHHHHHTCTTCCCCCH-------HHHHHHHHHHTCEEEEEEECGGGHHHHHHHHHHHHHHT T ss_pred CHHHHHHCCCCCCCCCH-------HHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHH T ss_conf 21565203686678978-------99986522386699999955351999999999999985 No 52 >1ysq_A HTH-type transcriptional regulator YIAJ; YAIJ, ICLR, structural genomics, PSI, protein structure initiative; 1.75A {Escherichia coli} Probab=24.93 E-value=29 Score=13.69 Aligned_cols=78 Identities=1% Similarity=-0.163 Sum_probs=47.1 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC--CHHHHHHHHHCC Q ss_conf 544678998999999999998558935980012300004989999999998506928997497632--267898987099 Q gi|254780558|r 242 YTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPR--NLTRVLAPKLNL 319 (396) Q Consensus 242 ~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~--Sva~~~A~~~gv 319 (396) ..|+..|+++++++.+......++.+ ..+.-.|.+.+..-+++++++|+.+-++..... +++.-+-...|- T Consensus 71 r~lLA~l~~~~~~~~l~~~~~~~~~~-------t~~t~~~~~~l~~~l~~ir~~G~a~~~~e~~~g~~~iAvPi~~~~g~ 143 (193) T 1ysq_A 71 KIYMAFGHPDYVKSYWESHQHEIQPL-------TRNTITELPAMFDELAHIRESGAAMDREENELGVSCIAVPVFDIHGR 143 (193) T ss_dssp HHHHHTSCHHHHHHHHHHTTTTCCCS-------STTCCCSHHHHHHHHHHHHHHTCEEEESSSSTTEEEEEEEECCTTSC T ss_pred HHHHHCCCHHHHHHHHHHCCCCCCCC-------CCCCHHHHHHHHHHHHHHHHCCEECCCCCCCCCCEEEEEEEECCCCC T ss_conf 99996499999999998444446555-------76640138999999999986264501330256825899999889999 Q ss_pred CEEEEEE Q ss_conf 4698458 Q gi|254780558|r 320 PYMVADL 326 (396) Q Consensus 320 p~~~~dv 326 (396) +.+.-.+ T Consensus 144 ~~~aisi 150 (193) T 1ysq_A 144 VPYAVSI 150 (193) T ss_dssp CSEEEEE T ss_pred EEEEEEE T ss_conf 9999999 No 53 >3kws_A Putative sugar isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} Probab=24.89 E-value=29 Score=13.69 Aligned_cols=83 Identities=11% Similarity=0.114 Sum_probs=41.7 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-------CCCCEEEE--ECCCCCCC Q ss_conf 8999999998599299981766568987787855446789989999999999985-------58935980--01230000 Q gi|254780558|r 209 LDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRR-------GTGYFGVM--NYRGAMLL 279 (396) Q Consensus 209 ~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~-------~p~~vGvn--NhmGs~~t 279 (396) .++.++.|+.-|-..++..|--... .......++..+.+...|.+ .---+++= ||..+-|. T Consensus 106 ~k~~i~~a~~lGa~~v~~~~~~~~~----------~~~~~~~~e~~~~~~~~l~~l~~~A~~~Gv~l~~E~~~~~~~~~~ 175 (287) T 3kws_A 106 MKEIIAAAGELGSTGVIIVPAFNGQ----------VPALPHTMETRDFLCEQFNEMGTFAAQHGTSVIFEPLNRKECFYL 175 (287) T ss_dssp HHHHHHHHHHTTCSEEEECSCCTTC----------CSBCCSSHHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTTCSSC T ss_pred HHHHHHHHHHHCCCCEEECCCCCCC----------CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEE T ss_conf 9999999999599803424566777----------888888899999999999999999996298799996435687000 Q ss_pred CCHHHHHHHHHHHHCCCCEE-EE Q ss_conf 49899999999985069289-97 Q gi|254780558|r 280 SNKESAEVIFKEFAKRGLLF-FD 301 (396) Q Consensus 280 ~~~~~m~~vl~~l~~rgL~f-lD 301 (396) .+..-...+++.+...++.+ +| T Consensus 176 ~t~~~~~~l~~~v~~p~~gl~~D 198 (287) T 3kws_A 176 RQVADAASLCRDINNPGVRCMGD 198 (287) T ss_dssp CCHHHHHHHHHHHCCTTEEEEEE T ss_pred CCHHHHHHHHHHHCCCCCCCCCC T ss_conf 67899778998738665554434 No 54 >2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Probab=24.62 E-value=20 Score=14.63 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=13.5 Q ss_pred CCEEEECCCCCCCHHHHHHHHHCCC Q ss_conf 9289974976322678989870994 Q gi|254780558|r 296 GLLFFDDGSSPRNLTRVLAPKLNLP 320 (396) Q Consensus 296 gL~flDs~Ts~~Sva~~~A~~~gvp 320 (396) -.+.||+|.+.+-+..++|+++|++ T Consensus 38 v~~LvDTGA~~~~Is~~~a~~lgl~ 62 (148) T 2i1a_A 38 VKAFVDTGAQTTIMSTRLAKKTGLS 62 (148) T ss_dssp EEEEECTTCSSCEEEHHHHHHHTGG T ss_pred EEEEECCCCCEEEECHHHHHHCCCC T ss_conf 9999827982688679999872996 No 55 >2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4 Probab=24.40 E-value=29 Score=13.63 Aligned_cols=78 Identities=10% Similarity=-0.003 Sum_probs=44.0 Q ss_pred CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCHHHHH Q ss_conf 689999999985992999817665689877878554467899899999999999855893-5980012300004989999 Q gi|254780558|r 208 SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGY-FGVMNYRGAMLLSNKESAE 286 (396) Q Consensus 208 ~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~-vGvnNhmGs~~t~~~~~m~ 286 (396) ..+++++.|+.-|-.+++--+.. ..+.+...++|........++ +.+-+|..+.+.+...++ T Consensus 106 ~~~~~i~~a~~lg~~~v~~~~~~----------------~~~~~~~~~~l~~l~~~A~~~gi~l~~~~~~~v~t~~~~~- 168 (296) T 2g0w_A 106 KEQTTFHMARLFGVKHINCGLLE----------------KIPEEQIIVALGELCDRAEELIIGLEFMPYSGVADLQAAW- 168 (296) T ss_dssp HHHHHHHHHHHHTCCEEEECCCS----------------CCCHHHHHHHHHHHHHHHTTSEEEEECCTTSSSCSHHHHH- T ss_pred HHHHHHHHHHHHCCCEEEECCCC----------------CHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHH- T ss_conf 99999999997199989647998----------------1178999999999999834685699970577789999999- Q ss_pred HHHHHHHCCCCEEEEC Q ss_conf 9999985069289974 Q gi|254780558|r 287 VIFKEFAKRGLLFFDD 302 (396) Q Consensus 287 ~vl~~l~~rgL~flDs 302 (396) .+++.+...++.++=+ T Consensus 169 ~l~~~v~~~~~g~~~D 184 (296) T 2g0w_A 169 RVAEACGRDNAQLICD 184 (296) T ss_dssp HHHHHHTCTTEEEEEE T ss_pred HHHHHCCCCCCEEEEC T ss_conf 9998537654236405 No 56 >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Probab=24.39 E-value=29 Score=13.63 Aligned_cols=152 Identities=11% Similarity=0.067 Sum_probs=85.8 Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC Q ss_conf 68658999737787716889999837935089870898768999999998599299981766568987787855446789 Q gi|254780558|r 169 SGARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQ 248 (396) Q Consensus 169 ~~~riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~ 248 (396) +...+.||-..=|.+.+.-.-.+ +..+..+|+-|++ +...| T Consensus 66 ~~G~l~vi~g~pg~GKT~~~l~l---------------------~~~~~~~g~~vl~------------------~SlEm 106 (315) T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQ---------------------AKNMSDNDDVVNL------------------HSLEM 106 (315) T ss_dssp CTTCEEEEECCTTSSHHHHHHHH---------------------HHHHHTTTCEEEE------------------EESSS T ss_pred CCCCEEEEEECCCCCHHHHHHHH---------------------HHHHHCCCCEEEE------------------EECCC T ss_conf 88808999957999999999999---------------------9987416982999------------------84768 Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC----CHHHHHHHHHCCCEEEE Q ss_conf 98999999999998558935980012300004989999999998506928997497632----26789898709946984 Q gi|254780558|r 249 TVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPR----NLTRVLAPKLNLPYMVA 324 (396) Q Consensus 249 ~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~----Sva~~~A~~~gvp~~~~ 324 (396) +.+++..|+...+..++... +-+.....-..+..........+....+++.+...... +......++.+.. .. T Consensus 107 ~~~~l~~R~~~~~~~v~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 183 (315) T 3bh0_A 107 GKKENIKRLIVTAGSINAQK-IKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGK--RV 183 (315) T ss_dssp CHHHHHHHHHHHHTTCCHHH-HHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSC--CE T ss_pred CHHHHHHHHHHHHHCCCHHH-HHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC--CC T ss_conf 88789999999984854554-4213431348899999999987641874785487753489999999988863477--52 Q ss_pred EEEECCC----------CCHHHHHHHHHHHHHHHHHCCEEEEEE-ECCH Q ss_conf 5886289----------999999999999999998719489998-0887 Q gi|254780558|r 325 DLYLDDQ----------VDRDKIREKLKGLEEIARTTGQAIGVA-VAFD 362 (396) Q Consensus 325 dvfLD~~----------~~~~~I~~qL~~l~~~Ar~~G~AI~ig-h~~p 362 (396) -+|+|.- .....|..-..+|..+|++.+..|.+. |... T Consensus 184 viviD~l~~~~~~~~~~~~~~~i~~i~~~Lk~lA~~~~i~ii~lsQlnr 232 (315) T 3bh0_A 184 IVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSR 232 (315) T ss_dssp EEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCG T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 1057798750367778789999999999999999973997899975363 No 57 >3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 2.80A {Bacillus halodurans} Probab=24.00 E-value=30 Score=13.58 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=42.6 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCC---------------------CCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 35089870898768999999998599299981766---------------------568987787855446789989999 Q gi|254780558|r 196 ANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQ---------------------AFDESYNEDDSYTLKVTQTVQQLL 254 (396) Q Consensus 196 ~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPME---------------------p~~~~~~~pGp~~L~~~~~~~~~~ 254 (396) ++..+-|.=.++..+..++.|...|++|.+.=|=+ .+..-..|+.-..+..+.+.+.-. T Consensus 198 p~~~L~I~GaGhva~~la~la~~lgf~V~v~D~r~~~~~~~~~p~~~~~~~~~~~~~l~~~~~d~~t~vvi~Th~h~~D~ 277 (362) T 3on5_A 198 PKERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQCEKHFFPDADEIIVDFPADFLRKFLIRPDDFVLIMTHHFQKDQ 277 (362) T ss_dssp CCEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGGCGGGCTTCSEEEESCHHHHHHHSCCCTTCEEEECCSCHHHHH T ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCEEEEECCCHHHCCHHCCCCCCEEECCCCHHHHHHCCCCCCCEEEEEECCHHHHH T ss_conf 98559997066508999999987897899974863433011088863364268155554025666858999817806699 Q ss_pred HHHHHHHHHCCCCEEEEECCCCC Q ss_conf 99999998558935980012300 Q gi|254780558|r 255 NRLRYSLRRGTGYFGVMNYRGAM 277 (396) Q Consensus 255 ~~l~~~l~~~p~~vGvnNhmGs~ 277 (396) ..|..+|.+=+.|+|+ |||| T Consensus 278 ~~L~~~L~~~~~YiG~---lGSr 297 (362) T 3on5_A 278 EILHFLLEKELRYIGI---LGSK 297 (362) T ss_dssp HHHHHHSSSCCSEEEE---SSCH T ss_pred HHHHHHHCCCCCEEEE---ECCH T ss_conf 9999996499988999---8878 No 58 >1izc_A Macrophomate synthase intermolecular diels- alderase; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5 Probab=23.71 E-value=30 Score=13.55 Aligned_cols=143 Identities=14% Similarity=0.046 Sum_probs=83.0 Q ss_pred CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE--------------- Q ss_conf 76899999999859929998176656898778785544678998999999999998558935980--------------- Q gi|254780558|r 207 NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVM--------------- 271 (396) Q Consensus 207 ~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvn--------------- 271 (396) .+...++.++-..|-.-++ + |..+ +.+|.++.+.+..=-=-|.-|+. T Consensus 104 ~~~~~~i~~~LD~Ga~GIi-v-------P~V~----------s~eeA~~~V~a~rypP~G~Rg~~~~~~~~g~~~~~~~~ 165 (339) T 1izc_A 104 KHDEVSLSTALDAGAAGIV-I-------PHVE----------TVEEVREFVKEMYYGPIGRRSFSPWTFSPGIADASLFP 165 (339) T ss_dssp TTCHHHHHHHHHHTCSEEE-E-------TTCC----------CHHHHHHHHHHHSCTTTCCCCCCSTTCBTTTBCCCSST T ss_pred CCCHHHHHHHHHCCCCEEE-E-------CCCC----------CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCC T ss_conf 8887999999717999899-7-------7869----------99999999997402888886767653334433111127 Q ss_pred ----------ECCCC-CCCCCHHHHHHHHHHHHCCC--CEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHH Q ss_conf ----------01230-00049899999999985069--289974976322678989870994698458862899999999 Q gi|254780558|r 272 ----------NYRGA-MLLSNKESAEVIFKEFAKRG--LLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIR 338 (396) Q Consensus 272 ----------NhmGs-~~t~~~~~m~~vl~~l~~rg--L~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~ 338 (396) ++.-- -.-.+..+++.+=+.++--| .+|+- ...++..+|+|... .+ .+.+...+. T Consensus 166 ~~~~y~~~~n~~~~vi~qIEt~~av~nldeI~av~GVD~i~iG--------p~DLs~slG~p~~~---~~-g~~~~p~v~ 233 (339) T 1izc_A 166 NDPYNVATSNNHVCIIPQIESVKGVENVDAIAAMPEIHGLMFG--------PGDYMIDAGLDLNG---AL-SGVPHPTFV 233 (339) T ss_dssp TCTTCHHHHHHHCEEEEEECSHHHHHTHHHHHTCTTCCCEEEC--------HHHHHHHTTCCTTC---CT-TSCCCHHHH T ss_pred CCHHHHHHHHHHCCEEECCCCHHHHHHHHHHHCCCCCCEEEEC--------CHHHHHHCCCCCCC---CC-CCCCCHHHH T ss_conf 6467899875413330003778999989998632687569977--------06889856998666---57-888998999 Q ss_pred HHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEHH Q ss_conf 999999999987194899980887889999999756887691899677 Q gi|254780558|r 339 EKLKGLEEIARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVSVVPLS 386 (396) Q Consensus 339 ~qL~~l~~~Ar~~G~AI~igh~~p~Ti~~L~~w~~~l~~~gi~lVpvS 386 (396) ..+++..+.++++|..+++...-++.+. .| .++|+.+|-++ T Consensus 234 ~Ai~~i~~aa~~~Gk~~g~~~~~~~~~~---~~----i~~G~~~v~~g 274 (339) T 1izc_A 234 EAMTKFSTAAQRNGVPIFGGALSVDMVP---SL----IEQGYRAIAVQ 274 (339) T ss_dssp HHHHHHHHHHHHTTCCEEEECSSGGGHH---HH----HHTTEEEEEEE T ss_pred HHHHHHHHHHHHCCCCEEEECCCHHHHH---HH----HHCCCCEEEEH T ss_conf 9999999999986995797069999999---99----98399899972 No 59 >3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B* Probab=23.56 E-value=30 Score=13.53 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=20.2 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 544678998999999999998558935980012 Q gi|254780558|r 242 YTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYR 274 (396) Q Consensus 242 ~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhm 274 (396) ..|...|+..++.+++..++.+-.+-+-+.|+. T Consensus 390 yDl~PeMsA~ev~~~~i~~i~~~~~d~i~vn~a 422 (561) T 3igz_B 390 FNEKPRMQSAAITEAAIEALKSGMYNVVRINFP 422 (561) T ss_dssp GGGSTTTTHHHHHHHHHHHHHHSCCSEEEEEEC T ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCCEEEECCC T ss_conf 101876664676766788875579888998467 No 60 >1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A Probab=23.19 E-value=31 Score=13.48 Aligned_cols=87 Identities=13% Similarity=0.176 Sum_probs=59.7 Q ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEE Q ss_conf 04989999999998506928997497632267898987099469845886289999999999999999998719489998 Q gi|254780558|r 279 LSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVA 358 (396) Q Consensus 279 t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~ig 358 (396) -.+..+++.+=+.++-.|+-.+==+ ...++..+|+| .+.+...+.+.+++..+.++++|...||- T Consensus 152 IEt~~av~nldeI~av~GvD~i~iG------p~DLs~slG~~---------g~~~~p~v~~ai~~v~~~~~~~gk~~G~~ 216 (256) T 1dxe_A 152 IESQQGVDNVDAIAATEGVDGIFVG------PSDLAAALGHL---------GNASHPDVQKAIQHIFNRASAHGKPSGIL 216 (256) T ss_dssp ECSHHHHHTHHHHHTSTTCCEEEEC------HHHHHHHTTCT---------TCTTSHHHHHHHHHHHHHHHHTTCCEEEE T ss_pred HCCHHHHHHHHHHHCCCCCCEEEEC------HHHHHHHCCCC---------CCCCCHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 1167899878886057898525677------48898742888---------89898799999999999999859986882 Q ss_pred ECCHHHHHHHHHHHHHHHHCCCEEEEHHH Q ss_conf 08878899999997568876918996777 Q gi|254780558|r 359 VAFDESIEVISQWLQQEHVRDVSVVPLSC 387 (396) Q Consensus 359 h~~p~Ti~~L~~w~~~l~~~gi~lVpvS~ 387 (396) ...+ +.+++|. ++|+.++-++. T Consensus 217 ~~~~---~~~~~~~----~~G~~~i~~g~ 238 (256) T 1dxe_A 217 APVE---ADARRYL----EWGATFVAVGS 238 (256) T ss_dssp CCSH---HHHHHHH----HTTCCEEEEEE T ss_pred CCCH---HHHHHHH----HHCCCEEEEHH T ss_conf 7999---9999999----81999999579 No 61 >3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} Probab=23.08 E-value=31 Score=13.47 Aligned_cols=181 Identities=13% Similarity=0.130 Sum_probs=101.6 Q ss_pred CEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCC-EEEECCCCCCCC-CCCC--------CC Q ss_conf 6589997377877168899998379350898708987689999999985992-999817665689-8778--------78 Q gi|254780558|r 171 ARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQE-AILQIPMQAFDE-SYNE--------DD 240 (396) Q Consensus 171 ~riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~E-vllhlPMEp~~~-~~~~--------pG 240 (396) .|+.|=||- ..|.|--..-. -|+.-+.+..+-+.|-+ +-+|+= |-... .+.| .. T Consensus 32 ~rL~VNIdh-----VAtLRnaRg~~----------~Pd~~~aA~~~~~~GAdgITvHlR-eDrRHI~d~Dv~~l~~~~~~ 95 (278) T 3gk0_A 32 IDLGVNIDH-----VATLRNARGTA----------YPDPVRAALAAEDAGADAITLHLR-EDRRHIVDADVRTLRPRVKT 95 (278) T ss_dssp SEEEEECHH-----HHHHHHHHSSS----------CSCHHHHHHHHHHTTCSEEEEECC-TTCSSSCHHHHHHHHHHCSS T ss_pred EEEEEEECC-----EEEECCCCCCC----------CCCHHHHHHHHHHCCCCEEEECCC-CCCCCCCHHHHHHHHHHHCC T ss_conf 488664111-----54201058989----------999999999999829986895268-87565758999999987377 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE--------CCCCCCCCCHHHHHHHHHHHHCCCC---EEEECCCCCCCH Q ss_conf 55446789989999999999985589359800--------1230000498999999999850692---899749763226 Q gi|254780558|r 241 SYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMN--------YRGAMLLSNKESAEVIFKEFAKRGL---LFFDDGSSPRNL 309 (396) Q Consensus 241 p~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnN--------hmGs~~t~~~~~m~~vl~~l~~rgL---~flDs~Ts~~Sv 309 (396) + |-..|.+. ..-+.-+++--|..+-+.- .-|=-+..+...+..+++.|++.|. +|+|. .-. T Consensus 96 ~--lNlE~a~~--~e~i~ia~~~kP~qvtLVPE~r~elTTegGlDv~~~~~~L~~~i~~Lk~~gIrVSLFIDP----d~~ 167 (278) T 3gk0_A 96 R--MNLECAVT--PEMLDIACEIRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFIDP----DEA 167 (278) T ss_dssp C--EEEEECSS--HHHHHHHHHHCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEECS----CHH T ss_pred C--CCCCCCCC--HHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEECC----CHH T ss_conf 5--57788870--999999996699879988888555455576620625999999999999749817998369----878 Q ss_pred HHHHHHHHCCCEEEEEEE--EC--CCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCH-HHHHHHHHHHHHHH Q ss_conf 789898709946984588--62--899999999999999999987194899980887-88999999975688 Q gi|254780558|r 310 TRVLAPKLNLPYMVADLY--LD--DQVDRDKIREKLKGLEEIARTTGQAIGVAVAFD-ESIEVISQWLQQEH 376 (396) Q Consensus 310 a~~~A~~~gvp~~~~dvf--LD--~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p-~Ti~~L~~w~~~l~ 376 (396) .-..|++.|+...+-+-- -+ +..+......++.++.+.|++.|.-|--||-.. +++..|.+ ++.++ T Consensus 168 qi~~A~~~Gad~IELhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgLn~~Nl~~i~~-ip~i~ 238 (278) T 3gk0_A 168 QIRAAHETGAPVIELHTGRYADAHDAAEQQREFERIATGVDAGIALGLKVNAGHGLHYTNVQAIAA-LPGIA 238 (278) T ss_dssp HHHHHHHHTCSEEEECCHHHHTCSSHHHHHHHHHHHHHHHHHHHHTTCEEEECTTCCTTTHHHHHT-CTTEE T ss_pred HHHHHHHCCCCEEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHC-CCCCE T ss_conf 999985059997997233553325432007999999999999997187574678988667899861-89976 No 62 >3ddo_A Urdpase, upase, uridine phosphorylase; transferase, cytoplasm, glycosyltransferase; 1.50A {Salmonella typhimurium} PDB: 1ryz_A 1sj9_A* 1y1q_A* 1y1s_A 1y1r_A 1zl2_A* 2hn9_A 1y1t_A* 2hsw_A 2hwu_A* 2pga_A* 2hrd_A 3dps_A 3fwp_A* 3c74_A* 2qdk_A 2iq5_A 2oec_A* 2i8a_A 2rj3_A ... Probab=21.76 E-value=33 Score=13.31 Aligned_cols=83 Identities=10% Similarity=0.049 Sum_probs=52.9 Q ss_pred CHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCC-----------CHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH Q ss_conf 9899999999999855--8935980012300004-----------98999999999850692899749763226789898 Q gi|254780558|r 249 TVQQLLNRLRYSLRRG--TGYFGVMNYRGAMLLS-----------NKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAP 315 (396) Q Consensus 249 ~~~~~~~~l~~~l~~~--p~~vGvnNhmGs~~t~-----------~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~ 315 (396) ...++.+.+..++... +..+|.+ ..+..|-. ........++.+.+.|..-+|=-++. ...+|. T Consensus 132 ~d~~l~~~~~~~~~~~~~~~~~G~~-~S~D~Fy~~~~r~~~~~~~~~~~~~~~~~~~~~~gv~avEMEsaa---l~~va~ 207 (253) T 3ddo_A 132 ADFACTTALVEAAKSIGATTHVGVT-ASSDTFYPGQERYDTYSGRVVRRFKGSMEEWQAMGVMNYEMESAT---LLTMCA 207 (253) T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEEE-EEESCSSGGGTCCCSSSCCCCGGGTTHHHHHHHTTCCEEESSHHH---HHHHHH T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEE-EECCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHH---HHHHHH T ss_conf 5878999999988864997279998-015840568753332024566888999999986398532257999---999999 Q ss_pred HHCCCEEEEEEEECCCCCHH Q ss_conf 70994698458862899999 Q gi|254780558|r 316 KLNLPYMVADLYLDDQVDRD 335 (396) Q Consensus 316 ~~gvp~~~~dvfLD~~~~~~ 335 (396) ..|+|++.--+..||..+.+ T Consensus 208 ~~gv~~~~i~~isdn~~~~~ 227 (253) T 3ddo_A 208 SQGLRAGMVAGVIVNRTQQE 227 (253) T ss_dssp TTTCEEEEEEEECCCTTC-- T ss_pred HCCCCEEEEEEEECCCCCCC T ss_conf 84996899999980366677 No 63 >2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae} Probab=21.73 E-value=33 Score=13.30 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=44.3 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCC----CCEEEECCCCC-CC--HHHHHHHHHCCCEE--EE Q ss_conf 999999998558935980012300004989999999998506----92899749763-22--67898987099469--84 Q gi|254780558|r 254 LNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKR----GLLFFDDGSSP-RN--LTRVLAPKLNLPYM--VA 324 (396) Q Consensus 254 ~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~r----gL~flDs~Ts~-~S--va~~~A~~~gvp~~--~~ 324 (396) ++.|+|+++.++..+-.. -|-.|..+|-.++..+... ..+|+|.+--. .| -..++++.++.+.. .. T Consensus 31 ~eii~wa~~~~~~~~~~~-----SfGkdS~VlLhL~~~v~~~~~~~~VvfiDTG~efpET~e~ve~l~~~~~~~~~~~~~ 105 (261) T 2oq2_A 31 QEIIAWSIVTFPHLFQTT-----AFGLTGLVTIDMLSKLSEKYYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIH 105 (261) T ss_dssp HHHHHHHHHHCSSEEEEC-----CCCHHHHHHHHHHHHHTTTSCCCEEEEECCSCBCHHHHHHHHHHHHHHTGGGTCCCE T ss_pred HHHHHHHHHHCCCEEEEE-----ECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCE T ss_conf 999999999789918998-----687889999999998566678886799559998899999999999995865443431 Q ss_pred EEEECCCCCHHH Q ss_conf 588628999999 Q gi|254780558|r 325 DLYLDDQVDRDK 336 (396) Q Consensus 325 dvfLD~~~~~~~ 336 (396) ..+.+....... T Consensus 106 ~~~~~~~~~~~~ 117 (261) T 2oq2_A 106 VYKPDGCESEAD 117 (261) T ss_dssp EECSTTCSSHHH T ss_pred EECCCHHHHHHH T ss_conf 445755667999 No 64 >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} Probab=21.71 E-value=33 Score=13.30 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=9.5 Q ss_pred CCHHHHHHHHHHCCCCEEEEC Q ss_conf 768999999998599299981 Q gi|254780558|r 207 NSLDRWMKEAKKKGQEAILQI 227 (396) Q Consensus 207 ~~~~~~~~~Ar~~G~Evllhl 227 (396) ++.....+.+++.|.+.-+++ T Consensus 672 ~~i~~~~~~a~~~G~~~~~~i 692 (1165) T 2qf7_A 672 ENMRVSMDAIAEENKLCEAAI 692 (1165) T ss_dssp GGGHHHHHHHHHTTCEEEEEE T ss_pred HHHHHHHHHHHHCCCEEEEEE T ss_conf 888888999984677688887 No 65 >1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A Probab=21.43 E-value=33 Score=13.26 Aligned_cols=105 Identities=14% Similarity=0.092 Sum_probs=52.5 Q ss_pred HHHHHHHCCCCEEE--EECCC-------CCCCCCHHHHHHHHHHHHCCCC-E-EEECCCCCC------------------ Q ss_conf 99999855893598--00123-------0000498999999999850692-8-997497632------------------ Q gi|254780558|r 257 LRYSLRRGTGYFGV--MNYRG-------AMLLSNKESAEVIFKEFAKRGL-L-FFDDGSSPR------------------ 307 (396) Q Consensus 257 l~~~l~~~p~~vGv--nNhmG-------s~~t~~~~~m~~vl~~l~~rgL-~-flDs~Ts~~------------------ 307 (396) |...+.+.-+.+-| .+||. ++..++..+|+...+.|++-|. + ..=.||-.+ T Consensus 175 l~~~~~~~~~~i~V~r~~~i~~~p~l~~~k~~~~~~al~~~~~~L~~g~~~i~IfPEGtRsr~~~~~g~~~p~~~~~~~k 254 (367) T 1iuq_A 175 LCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSV 254 (367) T ss_dssp TTHHHHHTSEEEECCCGGGTTSSGGGHHHHHHHHHHHHHHHHHHHHHCCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHH T ss_pred HHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 79999987896799648876667102245556679999999999964996999958877778776667657631013576 Q ss_pred CHHHHHHHHHCCCEEEEEEEECCC---CCHHHHHHHHHHHHHHHHHCCEEEEEEECCH Q ss_conf 267898987099469845886289---9999999999999999987194899980887 Q gi|254780558|r 308 NLTRVLAPKLNLPYMVADLYLDDQ---VDRDKIREKLKGLEEIARTTGQAIGVAVAFD 362 (396) Q Consensus 308 Sva~~~A~~~gvp~~~~dvfLD~~---~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p 362 (396) +-...+|.+.++|....-+.+... +....+...+.+. +.-+..+..|.+|-+.. T Consensus 255 ~g~~~La~~s~~p~~IvPvai~~~d~~pp~~~~~~~ige~-r~~~~~~V~V~~G~pId 311 (367) T 1iuq_A 255 DNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIGEK-RVIAFNGAGLSVAPEIS 311 (367) T ss_dssp HHHHHHHHTSSSCEEEEEEEEECGGGSCCC-----------CCCCCBCCEEEECCCCC T ss_pred HHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHCCCC-CCCCCCCEEEEECCCCC T ss_conf 7999999715999679944551552458975320000201-45777853899749865 No 66 >2fds_A Orotidine-monophosphate-decarboxylase; TIM barrel, structural genomics, structural genomics consortium, SGC, unknown function; 1.72A {Plasmodium berghei} SCOP: c.1.2.3 PDB: 2aqw_A Probab=21.30 E-value=34 Score=13.25 Aligned_cols=132 Identities=10% Similarity=0.111 Sum_probs=72.7 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCHHHHHH Q ss_conf 8999999998599299981766568987787855446789989999999999985-589359800123000049899999 Q gi|254780558|r 209 LDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRR-GTGYFGVMNYRGAMLLSNKESAEV 287 (396) Q Consensus 209 ~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~-~p~~vGvnNhmGs~~t~~~~~m~~ 287 (396) +.+..+.++..|+.|++-+ +..| =+.........+++. -..++=|+-+||... |++ T Consensus 140 L~~ii~~l~~~g~~VflDl-------K~gD----------IpnTv~~ya~a~~~~l~aDavTVhp~~G~d~------l~~ 196 (352) T 2fds_A 140 LKNVFDYLNSMNIPTMLDM-------KIND----------IGNTVKNYRKFIFEYLKSDSCTINVYMGTSM------LKD 196 (352) T ss_dssp HHHHHHHHHHTTCCEEEEE-------EECC----------CHHHHHHHHHHHHTTSCCSEEEECCTTCSTT------HHH T ss_pred HHHHHHHHHHCCCCEEEEE-------CCCC----------HHHHHHHHHHHHHHHCCCCEEEECCCCCHHH------HHH T ss_conf 9999999986799489840-------1058----------2689999999765307987899843666999------999 Q ss_pred HHHHHH---CCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH---HCC-EEEEEEEC Q ss_conf 999985---06928997497632267898987099469845886289999999999999999998---719-48999808 Q gi|254780558|r 288 IFKEFA---KRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIAR---TTG-QAIGVAVA 360 (396) Q Consensus 288 vl~~l~---~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar---~~G-~AI~igh~ 360 (396) ++.... .+|+|.|-.-+.+.|.-.+ . ....++..-...+.+++.+....+. ..| .-+.+|-. T Consensus 197 ~~~~~~~~~~kgv~vL~~tSn~~s~d~q--~---------~~~~~~~~~~~~v~~~~~~~a~~~~~~~~~g~~G~Vvgat 265 (352) T 2fds_A 197 ICFDYEKNKYYSAYVLIKTTNKDSFIFQ--N---------ELSINDKQAYIVMAEETQKMATDLKIDQNNEFIGFVVGSN 265 (352) T ss_dssp HSEETTTTEECEEEEEEECSSGGGHHHH--T---------TCEETTEEHHHHHHHHHHHHHHHHTTGGGTCCEEEEECTT T ss_pred HHHHHHHCCCCCCEEEEECCCCHHHHHH--H---------HHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCC T ss_conf 9999874346663477515850499997--4---------5023786113578899999999976641357776463579 Q ss_pred CHHHHHHHHHHHHH Q ss_conf 87889999999756 Q gi|254780558|r 361 FDESIEVISQWLQQ 374 (396) Q Consensus 361 ~p~Ti~~L~~w~~~ 374 (396) +|+-+..|.+-.++ T Consensus 266 ~p~el~~iR~~~p~ 279 (352) T 2fds_A 266 AFEEMKIIRNKFPD 279 (352) T ss_dssp CHHHHHHHHHHSTT T ss_pred CHHHHHHHHHHCCC T ss_conf 88999999986899 No 67 >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* Probab=21.26 E-value=34 Score=13.24 Aligned_cols=132 Identities=14% Similarity=0.226 Sum_probs=79.7 Q ss_pred CCHHHHHHHHHHCCCCEE-EECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE--EEECCCCCCCCCHH Q ss_conf 768999999998599299-981766568987787855446789989999999999985589359--80012300004989 Q gi|254780558|r 207 NSLDRWMKEAKKKGQEAI-LQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFG--VMNYRGAMLLSNKE 283 (396) Q Consensus 207 ~~~~~~~~~Ar~~G~Evl-lhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vG--vnNhmGs~~t~~~~ 283 (396) ....+.++.+.++|+..+ +++ +.+.++...+++...+.++.-+- +--++| ++.... T Consensus 143 ~~~~~~~~~~~~~G~~~iKiKv-------------------g~~~~~d~~~i~~ir~~~g~~~~l~~D~n~~--~~~~~~ 201 (369) T 2p8b_A 143 ENMAEEAASMIQKGYQSFKMKV-------------------GTNVKEDVKRIEAVRERVGNDIAIRVDVNQG--WKNSAN 201 (369) T ss_dssp HHHHHHHHHHHHTTCCEEEEEC-------------------CSCHHHHHHHHHHHHHHHCTTSEEEEECTTT--TBSHHH T ss_pred HHHHHHHHHHHHCCCCEEEEEC-------------------CCCHHHHHHHHHHHHHHHCCCCEEEEECCCC--CCCHHH T ss_conf 9999999999876996899965-------------------9998999999999999729886698752546--776999 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCH--HHHHHHHHCCCEEEEEEEECCC-CCHHHHH---------------------H Q ss_conf 99999999850692899749763226--7898987099469845886289-9999999---------------------9 Q gi|254780558|r 284 SAEVIFKEFAKRGLLFFDDGSSPRNL--TRVLAPKLNLPYMVADLYLDDQ-VDRDKIR---------------------E 339 (396) Q Consensus 284 ~m~~vl~~l~~rgL~flDs~Ts~~Sv--a~~~A~~~gvp~~~~dvfLD~~-~~~~~I~---------------------~ 339 (396) ++ .+++.+...|++|+..-..+... -..+.+..++|.+- |.. .+...+. . T Consensus 202 a~-~~~~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~ipia~-----~E~~~~~~~~~~~i~~~~~di~~~d~~~~GGit 275 (369) T 2p8b_A 202 TL-TALRSLGHLNIDWIEQPVIADDIDAMAHIRSKTDLPLMI-----DEGLKSSREMRQIIKLEAADKVNIKLMKCGGIY 275 (369) T ss_dssp HH-HHHHTSTTSCCSCEECCBCTTCHHHHHHHHHTCCSCEEE-----STTCCSHHHHHHHHHHTCCSEEEECHHHHTSHH T ss_pred HH-HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCC-----CCCEEEHHHHHHHHHCCCCCEEEEEEECCCCHH T ss_conf 99-998752024760243263866899999987536876104-----674130354999986489886886344177788 Q ss_pred HHHHHHHHHHHCCEEEEEEECCHHHH Q ss_conf 99999999987194899980887889 Q gi|254780558|r 340 KLKGLEEIARTTGQAIGVAVAFDESI 365 (396) Q Consensus 340 qL~~l~~~Ar~~G~AI~igh~~p~Ti 365 (396) .+.+...+|+++|.-+.+++.+...| T Consensus 276 ~~~~i~~~a~~~gi~~~~~~~~~~~i 301 (369) T 2p8b_A 276 PAVKLAHQAEMAGIECQVGSMVESSV 301 (369) T ss_dssp HHHHHHHHHHHTTCEEEECCSSCCHH T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHH T ss_conf 99999999998699389889640489 No 68 >1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1 Probab=21.25 E-value=27 Score=13.88 Aligned_cols=20 Identities=10% Similarity=0.049 Sum_probs=13.2 Q ss_pred CHHHHHHHHHHCCCCEEEEC Q ss_conf 68999999998599299981 Q gi|254780558|r 208 SLDRWMKEAKKKGQEAILQI 227 (396) Q Consensus 208 ~~~~~~~~Ar~~G~Evllhl 227 (396) ..+.+++.+|+.|..+.|++ T Consensus 75 Gl~~l~~~~~~~G~~~Glw~ 94 (362) T 1uas_A 75 GIKALADYVHAKGLKLGIYS 94 (362) T ss_dssp CHHHHHHHHHHTTCEEEEEE T ss_pred CHHHHHHHHHHCCCCCCEEE T ss_conf 38999999997597543673 No 69 >2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Probab=20.90 E-value=34 Score=13.19 Aligned_cols=120 Identities=12% Similarity=0.102 Sum_probs=77.5 Q ss_pred EEEEEECCCCCC--CHHHHHHHHHCCC-----------CCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC Q ss_conf 589997377877--1688999983793-----------508987089876899999999859929998176656898778 Q gi|254780558|r 172 RIAIVVSGLGIS--QTGTQRAINLLPA-----------NITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNE 238 (396) Q Consensus 172 riAIVIddlG~~--~~~~~~ai~~LP~-----------~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~ 238 (396) ++-+-|+||-=. ...-++++.++|. .+++-+.|..-+..+..+..+..|++.-+.-.... . T Consensus 5 ~~~l~i~GM~C~~Ca~~Ie~al~~~~GV~~v~vnl~~~~~~v~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~------~ 78 (149) T 2ew9_A 5 KCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVMEDYAG------S 78 (149) T ss_dssp EEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEECSCSCC------S T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCC------C T ss_conf 9999979976889999999998649991378976048889998547889999999766433864203200124------4 Q ss_pred CCCCCC-CCCCCHHHHHHHHHHHHHHCCCCEEE-EECCCCCC----CCCHHHHHHHHHHHHCCCC Q ss_conf 785544-67899899999999999855893598-00123000----0498999999999850692 Q gi|254780558|r 239 DDSYTL-KVTQTVQQLLNRLRYSLRRGTGYFGV-MNYRGAML----LSNKESAEVIFKEFAKRGL 297 (396) Q Consensus 239 pGp~~L-~~~~~~~~~~~~l~~~l~~~p~~vGv-nNhmGs~~----t~~~~~m~~vl~~l~~rgL 297 (396) ..--.| ..+|+-..-..+++..|.+++|...+ .|+.-.+. -.+.-..+.+.+.+.+-|+ T Consensus 79 ~~~~~l~v~gm~c~~c~~~ie~~L~~~~GV~~~~v~~~~~~~~V~~d~~~~~~~~i~~~I~~~Gy 143 (149) T 2ew9_A 79 DGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGF 143 (149) T ss_dssp SSEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHHTC T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHCCC T ss_conf 40577741587743106889999857998289999889997999989898999999999996699 No 70 >3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protein structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} Probab=20.85 E-value=34 Score=13.19 Aligned_cols=81 Identities=11% Similarity=0.205 Sum_probs=44.4 Q ss_pred HHHHHHHHHCC-CEEEEE-----EEECCCCCHHH-HHHHHHHHHHHHHHCCEEEEEEECC-HHHHHHHHHHHHHHH-HCC Q ss_conf 67898987099-469845-----88628999999-9999999999998719489998088-788999999975688-769 Q gi|254780558|r 309 LTRVLAPKLNL-PYMVAD-----LYLDDQVDRDK-IREKLKGLEEIARTTGQAIGVAVAF-DESIEVISQWLQQEH-VRD 379 (396) Q Consensus 309 va~~~A~~~gv-p~~~~d-----vfLD~~~~~~~-I~~qL~~l~~~Ar~~G~AI~igh~~-p~Ti~~L~~w~~~l~-~~g 379 (396) .+..++.-+++ |...-+ ..++-.+.... +.+-++.+++.......-|+|.|.. ++..+.|.+.+.+.. ... T Consensus 179 ~~a~ig~lL~ikPIl~~~~~G~l~~~~k~Rg~kka~~~l~~~i~~~~~~~~~~i~i~~~~~~e~a~~l~~~l~~~~~~~~ 258 (285) T 3lup_A 179 GSAIIGNLLSIKPVLHFNEEGKIVVYEKVRTEKKALKRLAEIVKEMTADGEYDIAIIHSRAQDKAEQLYNLLAKAGLKDD 258 (285) T ss_dssp HHHHHHHHTTSCCEEEECTTSCEEEEECCSSHHHHHHHHHHHHHHHGGGSCEEEEEEESSCHHHHHHHHHHHHHTTCGGG T ss_pred HHHHHHHHCCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCC T ss_conf 68899850087799999889978875300458789999999999861699816999989999999999999986679998 Q ss_pred CEEEEHHHHH Q ss_conf 1899677743 Q gi|254780558|r 380 VSVVPLSCLA 389 (396) Q Consensus 380 i~lVpvS~l~ 389 (396) +.+.+++.++ T Consensus 259 i~i~~~~pvi 268 (285) T 3lup_A 259 LEIVSFGGVI 268 (285) T ss_dssp EEEEECCHHH T ss_pred EEEEEECCEE T ss_conf 8999976299 No 71 >2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A Probab=20.63 E-value=35 Score=13.16 Aligned_cols=108 Identities=10% Similarity=-0.004 Sum_probs=63.2 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEE Q ss_conf 99899999999999855893598001230000498999999999850692899749763226789898709946984588 Q gi|254780558|r 248 QTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLY 327 (396) Q Consensus 248 ~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvf 327 (396) ++.+|+.+.+..+....| .+-|-.-+ --.|-.....+.+.+..+-...=|+.+..+.. .+.+..... +.+-+. T Consensus 267 ~s~~eli~~y~~l~~~yP-IisIEDp~---~e~D~~gw~~lt~~lg~~~~iVGDDl~~Tn~~--rl~~gi~~~-~~nail 339 (431) T 2fym_A 267 FTSEEFTHFLEELTKQYP-IVSIEDGL---DESDWDGFAYQTKVLGDKIQLVGDDLFVTNTK--ILKEGIEKG-IANSIL 339 (431) T ss_dssp ECHHHHHHHHHHHHHHSC-EEEEESCS---CTTCHHHHHHHHHHHTTTSEEEESTTTTTCHH--HHHHHHHTT-CCSEEE T ss_pred CCHHHHHHHHHHHHHCCC-EEEEECCC---CHHHHHHHHHHHHHHCCCEEEECCHHCCCCHH--HHHHHHHCC-CCCHHE T ss_conf 389999999999985198-78984798---72456689999997388079988601024458--999876316-760222 Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCHHH Q ss_conf 6289999999999999999998719489998088788 Q gi|254780558|r 328 LDDQVDRDKIREKLKGLEEIARTTGQAIGVAVAFDES 364 (396) Q Consensus 328 LD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p~T 364 (396) |.-.|- .. .....++.++|+++|+.++|.|-.-+| T Consensus 340 iK~NQi-GT-vset~ea~~la~~~g~~~ivShRsGET 374 (431) T 2fym_A 340 IKFNQI-GS-LTETLAAIKMAKDAGYTAVISHRSGET 374 (431) T ss_dssp ECGGGT-CS-HHHHHHHHHHHHHTTCEEEEECCSSCC T ss_pred ECCCCC-EE-HHHHHHHHHHHHHCCCEEEEECCCCCC T ss_conf 234332-23-999999999999879879997898886 No 72 >2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} Probab=20.62 E-value=34 Score=13.23 Aligned_cols=174 Identities=13% Similarity=0.093 Sum_probs=99.5 Q ss_pred CCCHHHHHHHHHHCCCCEEEECC--C----------------------------CCCCCCCCCCCCCCCCC----CCCHH Q ss_conf 87689999999985992999817--6----------------------------65689877878554467----89989 Q gi|254780558|r 206 GNSLDRWMKEAKKKGQEAILQIP--M----------------------------QAFDESYNEDDSYTLKV----TQTVQ 251 (396) Q Consensus 206 ~~~~~~~~~~Ar~~G~EvllhlP--M----------------------------Ep~~~~~~~pGp~~L~~----~~~~~ 251 (396) .....+.++.|++.|-=.=|||= | +..+.-. +-|-+.|+. --..+ T Consensus 231 ~~Fl~eqI~dAK~~gvLfSLHLKATMMKVSDPIIFGHaV~vff~dvF~K~~~~l~~lGvnp-NnGlgdl~~Ki~~L~~~~ 309 (738) T 2b0t_A 231 DAFLLEQVARAKAEGILFSAHLKATMMKVSDPIIFGHVVRAYFADVFAQYGEQLLAAGLNG-ENGLAAILSGLESLDNGE 309 (738) T ss_dssp HHHHHHHHHHHHHHTCEEEECBCTTTSTTHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCSS-TTHHHHHHHHHTTSTTHH T ss_pred HHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHCCCHH T ss_conf 9999999999986495798301233312468421799999999999999999999849884-668899999998455305 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCC-----------------------CCC----------------CCCHHHHHHHHHHH Q ss_conf 999999999985589359800123-----------------------000----------------04989999999998 Q gi|254780558|r 252 QLLNRLRYSLRRGTGYFGVMNYRG-----------------------AML----------------LSNKESAEVIFKEF 292 (396) Q Consensus 252 ~~~~~l~~~l~~~p~~vGvnNhmG-----------------------s~~----------------t~~~~~m~~vl~~l 292 (396) +|+..+...+..-|...-||..-| ++. .+-...-+.+++.| T Consensus 310 ~I~adi~~~~~~~P~lAMVdSdkGITNLHVPSDVIIDASMPAmIR~~GkmW~~dG~~~DtkavIPD~sYA~iYq~~I~~c 389 (738) T 2b0t_A 310 EIKAAFEKGLEDGPDLAMVNSARGITNLHVPSDVIVDASMPAMIRTSGHMWNKDDQEQDTLAIIPDSSYAGVYQTVIEDC 389 (738) T ss_dssp HHHHHHHHHHHHSCCBCEEEGGGTEETTTCTTTSBHHHHHHHHHHTTTEEECTTSCEEEEEEECSSHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCHHHHHHCCCEECCCCCCCCCEEECCCCHHHHHHHHHHHHH T ss_conf 69999999986199747761577843566886556726758999830623899988154338546531378999999999 Q ss_pred HCCCCEEEECCCCCCCHH-----HHHHHHHC-------CCEEEEEEEECCCC-------------------CHHHHHHHH Q ss_conf 506928997497632267-----89898709-------94698458862899-------------------999999999 Q gi|254780558|r 293 AKRGLLFFDDGSSPRNLT-----RVLAPKLN-------LPYMVADLYLDDQV-------------------DRDKIREKL 341 (396) Q Consensus 293 ~~rgL~flDs~Ts~~Sva-----~~~A~~~g-------vp~~~~dvfLD~~~-------------------~~~~I~~qL 341 (396) +++|-| | -|+-.||. .+-|.++| +|....-.++|..- ....|+.-. T Consensus 390 k~~Gaf--D-PttmGsV~NVGLMAqKAEEYGSHdkTFe~~~~G~v~vv~~~G~vl~eh~Ve~GDIwR~cq~kd~pi~dWv 466 (738) T 2b0t_A 390 RKNGAF--D-PTTMGTVPNVGLMAQKAEEYGSHDKTFRIEADGVVQVVSSNGDVLIEHDVEANDIWRACQVKDAPIQDWV 466 (738) T ss_dssp HHHCSC--C-TTTCCCCCEEECCTTTCGGGGCGGGEEECCSSEEEEEECTTSCEEEEEEECTTCEEEEEEECHHHHHHHH T ss_pred HHCCCC--C-CHHCCCCCCHHHHCCCHHHHCCCCCCEECCCCCEEEEEECCCCEEEEEEECCCCHHHHHHCCCCHHHHHH T ss_conf 974998--9-4011577761653027586388886354489966999979998999987647651667533560699999 Q ss_pred HHHHHHHHHCCE-EEEEE-ECCH---HHHHHHHHHHHHHHHCCCEEE Q ss_conf 999999987194-89998-0887---889999999756887691899 Q gi|254780558|r 342 KGLEEIARTTGQ-AIGVA-VAFD---ESIEVISQWLQQEHVRDVSVV 383 (396) Q Consensus 342 ~~l~~~Ar~~G~-AI~ig-h~~p---~Ti~~L~~w~~~l~~~gi~lV 383 (396) +-+..+||..|. ||--- .-|. +-|.....++++....|+.+- T Consensus 467 kLav~Rar~t~~pavFWLd~~RaHd~~li~kv~~yL~~~dt~gl~i~ 513 (738) T 2b0t_A 467 KLAVTRSRLSGMPAVFWLDPERAHDRNLASLVEKYLADHDTEGLDIQ 513 (738) T ss_dssp HHHHHHHHHHCCCEEEECCTTCHHHHHHHHHHHHHHTTSCCTTCCEE T ss_pred HHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEE T ss_conf 99999988619966896078886319999999999986488898527 No 73 >1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A* Probab=20.46 E-value=35 Score=13.14 Aligned_cols=96 Identities=15% Similarity=0.307 Sum_probs=66.5 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC---EEEECCCCCCCHHHHHHHHHCCCEEEEEE--EEC--CCCCHHHHHHHHHHHHHH Q ss_conf 30000498999999999850692---89974976322678989870994698458--862--899999999999999999 Q gi|254780558|r 275 GAMLLSNKESAEVIFKEFAKRGL---LFFDDGSSPRNLTRVLAPKLNLPYMVADL--YLD--DQVDRDKIREKLKGLEEI 347 (396) Q Consensus 275 Gs~~t~~~~~m~~vl~~l~~rgL---~flDs~Ts~~Sva~~~A~~~gvp~~~~dv--fLD--~~~~~~~I~~qL~~l~~~ 347 (396) |=-+..+...++.+.+.|++.|. +|+|. .-..-+.|++.|....+-+- |-+ +..+......++.++... T Consensus 106 Gld~~~~~~~L~~~i~~lk~~girvSLFiDP----d~~qi~~a~~~Gad~IElhTG~YA~a~~~~~~~~el~~i~~aa~~ 181 (243) T 1m5w_A 106 GLDVAGQRDKMRDACKRLADAGIQVSLFIDA----DEEQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQELARIAKAATF 181 (243) T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCEEEEEECS----CHHHHHHHHHTTCSEEEEECHHHHHCCSHHHHHHHHHHHHHHHHH T ss_pred CEEECCCHHHHHHHHHHHHHCCCCEEEEECC----CHHHHHHHHHCCCCEEEEECCHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf 5632265889999999998759816998368----889999998719995874010000224310257899999999999 Q ss_pred HHHCCEEEEEEECCH-HHHHHHHHHHHHH Q ss_conf 987194899980887-8899999997568 Q gi|254780558|r 348 ARTTGQAIGVAVAFD-ESIEVISQWLQQE 375 (396) Q Consensus 348 Ar~~G~AI~igh~~p-~Ti~~L~~w~~~l 375 (396) |++.|.-|--||-.. +.+..|.+ ++.+ T Consensus 182 A~~lGL~VnAGHgLn~~Nl~~i~~-i~~i 209 (243) T 1m5w_A 182 AASLGLKVNAGHGLTYHNVKAIAA-IPEM 209 (243) T ss_dssp HHHTTCEEEEESSCCTTTHHHHHT-CTTE T ss_pred HHHCCCEEECCCCCCHHHHHHHHC-CCCC T ss_conf 997599563699988766899844-8997 No 74 >3pe5_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; 2.38A {Clostridium leptum} Probab=20.01 E-value=18 Score=14.97 Aligned_cols=20 Identities=0% Similarity=-0.006 Sum_probs=11.8 Q ss_pred CCCCCCHHHHHHHHHHHHCC Q ss_conf 00004989999999998506 Q gi|254780558|r 276 AMLLSNKESAEVIFKEFAKR 295 (396) Q Consensus 276 s~~t~~~~~m~~vl~~l~~r 295 (396) +|..-....|+.+++.++.. T Consensus 259 ~R~~RQq~vl~al~~k~~~~ 278 (403) T 3pe5_A 259 GRTQRQRDFMLQVLNKVKGT 278 (403) T ss_dssp HHHHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHHCC T ss_conf 59999999999999987485 Done!