HHSEARCH alignment of GI: 254780558 and SCOP domain: d1v6ta_

Alignment
>d1v6ta_ c.6.2.5 (A:) Hypothetical protein PH0986 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=96.64  E-value=0.02  Score=32.07  Aligned_cols=195  Identities=16%  Similarity=0.186  Sum_probs=131.9

Q ss_pred             CCCCCCC----HHHHHHHHHCCCCCEEEEECCCC------CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3778771----68899998379350898708987------6899999999859929998176656898778785544678
Q gi|254780558|r  178 SGLGISQ----TGTQRAINLLPANITLAFASNGN------SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVT  247 (396)
Q Consensus       178 ddlG~~~----~~~~~ai~~LP~~vT~A~~P~~~------~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~  247 (396)
                      -|||.+.    .+.+++|+  |+ ||-|=+.-+-      .-++.++.|.+.|-.|=-|-     +||+.+ |=+=-...
T Consensus         7 ~DlGE~~g~~~~g~D~~lm--~~-issaNIACG~HAGD~~~m~~tv~lA~~~~V~IGAHP-----sypD~~-gFGRr~~~   77 (254)
T d1v6ta_           7 SDLGESFGRYKLGLDEEVM--KY-ITSANVACGWHAGDPLVMRKTVRLAKENDVQVGAHP-----GYPDLM-GFGRRYMK   77 (254)
T ss_dssp             EEECCCBTTBCCSCHHHHT--TT-CSEEEEECSSSSCCHHHHHHHHHHHHHTTCEEEEEC-----CCSCTT-TTTCSCCC
T ss_pred             CCCCCCCCCCCCCCCHHHH--HH-HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-----CCCCCC-CCCCCCCC
T ss_conf             2279887887778818998--67-525888517456779999999999998299743799-----986733-36755466


Q ss_pred             CCHHHHHHHHHHHHHHCCCC--------EEEEECCCCC---CCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHHHH
Q ss_conf             99899999999999855893--------5980012300---004989999999998506--9289974976322678989
Q gi|254780558|r  248 QTVQQLLNRLRYSLRRGTGY--------FGVMNYRGAM---LLSNKESAEVIFKEFAKR--GLLFFDDGSSPRNLTRVLA  314 (396)
Q Consensus       248 ~~~~~~~~~l~~~l~~~p~~--------vGvnNhmGs~---~t~~~~~m~~vl~~l~~r--gL~flDs~Ts~~Sva~~~A  314 (396)
                      ++++++.+.+..-++.+-..        ..|--| |..   ...|+...+.+++.++..  +|.++   +-+.|...+.|
T Consensus        78 ~s~~el~~~i~~Qi~al~~~a~~~g~~l~hVKpH-GALYN~a~~D~~lA~ai~~ai~~~~~~l~l~---~~~~s~~~~~A  153 (254)
T d1v6ta_          78 LTPEEARNYILYQVGALYAFAKAEGLELQHVKPH-GALYNAMVKEEDLARAVIEGILDFDKDLILV---TLSNSRVADIA  153 (254)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCC-HHHHHHHHHCHHHHHHHHHHHHHHCTTCEEE---EETTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEH-HHHHHHHHCCHHHHHHHHHHHHHHCCCCCEE---ECCCCHHHHHH
T ss_conf             7889999999999999999999859905798311-9998888538999999999999737675376---54883799999


Q ss_pred             HHHCCCEEEEEEEECCC-----------------CCHHHHHHHHHHHHHHHHH------CCEEEE-----EE--ECCHHH
Q ss_conf             87099469845886289-----------------9999999999999999987------194899-----98--088788
Q gi|254780558|r  315 PKLNLPYMVADLYLDDQ-----------------VDRDKIREKLKGLEEIART------TGQAIG-----VA--VAFDES  364 (396)
Q Consensus       315 ~~~gvp~~~~dvfLD~~-----------------~~~~~I~~qL~~l~~~Ar~------~G~AI~-----ig--h~~p~T  364 (396)
                      ++.|+++.. ..|.|-.                 .|++.+.+|   +.+++++      .|.-|-     ||  .-.|+.
T Consensus       154 ~~~Gl~~~~-E~FADR~Y~~dG~Lv~R~~~gAvi~d~~~~~~q---v~~mv~~g~V~ti~G~~I~i~adTICVHGDtp~A  229 (254)
T d1v6ta_         154 EEMGLKVAH-EVFADRAYNPDGTLVPRGRPGAVIEDKEEIAER---VISMVKDGGIRAINGEWVDLKVDTICVHGDNPKA  229 (254)
T ss_dssp             HHHTCCEEE-EECTTBCBCTTSCBCC-----CBCCCHHHHHHH---HHHHHHHSEEECTTSCEEECCCSEEECCCSSHHH
T ss_pred             HHHCCCEEE-EEEEECCCCCCCCEEEECCCCCCCCCHHHHHHH---HHHHHHCCCEEECCCCEEECCCCEEEECCCCHHH
T ss_conf             872776223-353143488999887602444435789999999---9999867988915898874367989979999789


Q ss_pred             HHHHHHHHHHHHHCCCEEEEHHHHH
Q ss_conf             9999999756887691899677743
Q gi|254780558|r  365 IEVISQWLQQEHVRDVSVVPLSCLA  389 (396)
Q Consensus       365 i~~L~~w~~~l~~~gi~lVpvS~l~  389 (396)
                      ++.++..-..|++.||++.|+++++
T Consensus       230 v~~a~~ir~~L~~~gi~I~pl~~~~  254 (254)
T d1v6ta_         230 VEITSYIRKVLEEEGVKIVPMKEFI  254 (254)
T ss_dssp             HHHHHHHHHHHHHTTCEECCGGGTC
T ss_pred             HHHHHHHHHHHHHCCCEEEEHHHCC
T ss_conf             9999999999998899996568809


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: LamB/YcsF-like
domain: Hypothetical protein PH0986
species: Pyrococcus horikoshii [TaxId: 53953]