Query         gi|254780558|ref|YP_003064971.1| hypothetical protein CLIBASIA_02225 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 396
No_of_seqs    176 out of 400
Neff          6.1 
Searched_HMMs 13730
Date          Wed Jun  1 09:50:33 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780558.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2nlya1 c.6.2.7 (A:31-254) Hyp 100.0       0       0  516.4  23.4  218  171-389     2-223 (224)
  2 d2j13a1 c.6.2.3 (A:1-235) Puta  98.5 1.6E-06 1.2E-10   58.0  11.3  181  170-391    44-234 (235)
  3 d2c1ia1 c.6.2.3 (A:268-463) Pe  98.4 6.4E-05 4.6E-09   47.9  17.8  171  172-392     2-184 (196)
  4 d1ny1a_ c.6.2.3 (A:) Probable   98.3 3.4E-06 2.5E-10   55.9  10.4  181  170-391    42-232 (235)
  5 d2iw0a1 c.6.2.3 (A:29-248) Chi  98.3 0.00014 9.9E-09   45.8  18.5  185  171-393    14-214 (220)
  6 d2cc0a1 c.6.2.3 (A:1-192) Acet  98.3 3.2E-05 2.3E-09   49.8  14.6  170  171-390     5-187 (192)
  7 d2c71a1 c.6.2.3 (A:480-683) Xy  97.9 2.6E-05 1.9E-09   50.3   8.1  170  172-391     2-187 (204)
  8 d2i5ia1 c.6.2.8 (A:2-262) Unch  96.7   0.019 1.4E-06   32.2  17.4  213  172-388     4-259 (261)
  9 d1z7aa1 c.6.2.6 (A:4-304) Hypo  96.7  0.0078 5.7E-07   34.7   9.0  184  186-390    82-292 (301)
 10 d1v6ta_ c.6.2.5 (A:) Hypotheti  96.6    0.02 1.5E-06   32.1  15.9  195  178-389     7-254 (254)
 11 d1xw8a_ c.6.2.5 (A:) Hypotheti  95.1   0.086 6.3E-06   28.1   8.7  193  178-385     7-245 (247)
 12 d2dfaa1 c.6.2.5 (A:1-250) Hypo  94.9    0.11 7.8E-06   27.5  11.1  191  178-384     7-249 (250)
 13 d1i60a_ c.1.15.4 (A:) Hypothet  73.0     2.5 0.00018   18.9  12.1   81  207-301    84-173 (278)
 14 d2chra1 c.1.11.2 (A:127-370) C  72.6     2.5 0.00019   18.8   7.5  139  208-365    20-177 (244)
 15 d1nlfa_ c.37.1.11 (A:) Hexamer  57.9     4.9 0.00035   17.0  13.1  100  244-363    73-182 (274)
 16 d1muca1 c.1.11.2 (A:131-372) M  54.5     5.5  0.0004   16.7   8.6  149  194-362     6-174 (242)
 17 d1qgoa_ c.92.1.2 (A:) Cobalt c  54.5     5.5  0.0004   16.7  16.7  186  172-385     1-233 (257)
 18 d1nu5a1 c.1.11.2 (A:127-369) C  53.9     5.7 0.00041   16.6   9.3  142  211-372    23-186 (243)
 19 d1byra_ d.136.1.1 (A:) Nucleas  45.0     7.8 0.00057   15.8   7.3   65  196-278     2-66  (152)
 20 d2pjua1 c.92.3.1 (A:11-196) Pr  44.4     7.9 0.00058   15.7  10.0   95  244-350    74-185 (186)
 21 d1nxia_ d.58.47.1 (A:) Hypothe  43.1     8.3 0.00061   15.6   3.2   93  251-353    19-113 (132)
 22 d2q8za1 c.1.2.3 (A:1-323) Prot  41.0     6.6 0.00048   16.2   2.0   17  209-225   119-135 (323)
 23 d2q02a1 c.1.15.4 (A:1-271) Put  39.2     9.6  0.0007   15.2   9.0   17  210-226    87-103 (271)
 24 d1jpdx1 c.1.11.2 (X:114-321) L  36.3      11 0.00077   14.9   5.7  141  194-362     2-165 (208)
 25 d1sjda1 c.1.11.2 (A:126-367) N  35.9      11 0.00078   14.9   4.7  141  194-362     5-169 (242)
 26 d1x64a2 g.39.1.3 (A:53-83) PDZ  35.8     4.6 0.00034   17.2   0.5   12  292-303     9-20  (31)
 27 d1to3a_ c.1.10.1 (A:) Putative  35.2      11  0.0008   14.8   3.7   18  209-226   142-159 (291)
 28 d1o98a2 c.76.1.3 (A:2-76,A:311  33.9      11 0.00082   14.7   2.3   15  172-186     5-19  (275)
 29 d2csua3 c.23.4.1 (A:291-453) A  33.8      12 0.00085   14.7  14.5  152  169-352     2-162 (163)
 30 d1kpga_ c.66.1.18 (A:) CmaA1 {  32.6     8.9 0.00065   15.4   1.6  170  175-378    66-244 (285)
 31 d1x62a1 g.39.1.3 (A:43-73) PDZ  30.5     4.7 0.00034   17.2  -0.2   12  292-303     9-20  (31)
 32 d1u1ia1 c.2.1.3 (A:1-227,A:333  29.0      14   0.001   14.2   5.1   88  283-376   181-287 (287)
 33 d2fdsa1 c.1.2.3 (A:1-324) Prot  28.2      14  0.0011   14.1   8.9  132  209-374   121-260 (324)
 34 d2g0wa1 c.1.15.4 (A:10-284) Hy  26.7      15  0.0011   13.9   9.8  100  185-302    50-163 (275)
 35 d1m5wa_ c.1.24.1 (A:) Pyridoxi  25.9      16  0.0012   13.8   7.3  114  258-376    80-209 (242)
 36 d1uv7a_ d.67.4.1 (A:) General   24.5      15  0.0011   13.9   1.6   41  346-386     9-59  (80)
 37 d1kpia_ c.66.1.18 (A:) CmaA2 {  24.4      17  0.0012   13.6   3.4  170  174-378    64-250 (291)
 38 d1o98a1 c.105.1.1 (A:77-310) 2  22.0      19  0.0014   13.3   5.5   50  311-360    57-110 (234)
 39 d2gnpa1 c.124.1.8 (A:56-317) T  21.8      19  0.0014   13.3   5.4   18  314-331   178-195 (262)
 40 d2ptza1 c.1.11.1 (A:139-429) E  21.0      20  0.0014   13.2   8.6  110  247-365   130-239 (291)
 41 d1hjsa_ c.1.8.3 (A:) Beta-1,4-  20.9      20  0.0014   13.2   5.7  145  207-359    60-245 (332)

No 1  
>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus halodurans [TaxId: 86665]}
Probab=100.00  E-value=0  Score=516.43  Aligned_cols=218  Identities=21%  Similarity=0.325  Sum_probs=212.5

Q ss_pred             CEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             65899973778771688999983793508987089876899999999859929998176656898778785544678998
Q gi|254780558|r  171 ARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTV  250 (396)
Q Consensus       171 ~riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~  250 (396)
                      +||||||||+|++...+++ +.+||+||||||+||.+++.+|++.||++||||||||||||.+|+.+||||++|+++|++
T Consensus         2 ~riAIVIdD~G~~~~~~~~-~~~Lp~pvT~Ai~P~~~~~~~~a~~A~~~g~EvllhlPMep~~~~~~~~gp~~L~~~~~~   80 (224)
T d2nlya1           2 KRAAIIIDDFGGDVKGVDD-FLTGEIPVTVAVMPFLEHSTKQAEIAQAAGLEVIVHMPLEPKKGKISWLGPSGITSNLSV   80 (224)
T ss_dssp             EEEEEEEEEESSCCTTHHH-HHTCSSCEEEEECSSSTTHHHHHHHHHHTTCEEEEEEEECCC--------CCCBCTTCCH
T ss_pred             CEEEEEEECCCCCHHHHHH-HHCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf             7199999679998689999-975898758998799986199999999879869997455756677678887767778999


Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECC
Q ss_conf             99999999999855893598001230000498999999999850692899749763226789898709946984588628
Q gi|254780558|r  251 QQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDD  330 (396)
Q Consensus       251 ~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~  330 (396)
                      +||+++|+|+|+++|+|+||||||||+||+|+..|+++|++|++||||||||+|+++|+++++|++.|+|+++|||||||
T Consensus        81 ~ei~~~l~~~l~~vP~avGvnNhmGS~~T~~~~~m~~v~~~l~~~gl~fvDS~T~~~sva~~~A~~~gvp~~~rdvfLD~  160 (224)
T d2nlya1          81 GEVKSRVRKAFDDIPYAVGLNNHMGSKIVENEKIMRAILEVVKEKNAFIIDSGTSPHSLIPQLAEELEVPYATRSIFLDN  160 (224)
T ss_dssp             HHHHHHHHHHHHHSTTCCEEEEEECTTGGGCHHHHHHHHHHHHHTTCEEEECCCCSSCSHHHHHHHTTCCEEECCEESCC
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCHHCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCEEEEEEECCC
T ss_conf             99999999999847364797137664111798999999999977697899327774668999998759985888786579


Q ss_pred             CCC-HHHHHHHHHHHHHHHHHCCEEEEEEE---CCHHHHHHHHHHHHHHHHCCCEEEEHHHHH
Q ss_conf             999-99999999999999987194899980---887889999999756887691899677743
Q gi|254780558|r  331 QVD-RDKIREKLKGLEEIARTTGQAIGVAV---AFDESIEVISQWLQQEHVRDVSVVPLSCLA  389 (396)
Q Consensus       331 ~~~-~~~I~~qL~~l~~~Ar~~G~AI~igh---~~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~  389 (396)
                      +++ ...|++||++++++|+++|+||+|||   +||+|+++|++|+++++++||+|||+|+|+
T Consensus       161 ~~~~~~~I~~~l~~~~~~A~~~G~AI~IGH~~~p~p~Tl~~L~~~l~~l~~~gi~lvpvS~ll  223 (224)
T d2nlya1         161 THSSRKEVIKNMRKLAKKAKQGSEPIGIGHVGVRGDETYAGIRSMLDEFQAESIQLVPVSQLL  223 (224)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTSCCEEEEECSTTHHHHHHHHGGGHHHHHHTTEEECCGGGGC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHC
T ss_conf             997199999999999999873696799983799976899999997357765887999778837


No 2  
>d2j13a1 c.6.2.3 (A:1-235) Putative polysaccharide deacetylase BA0424 {Bacillus anthracis [TaxId: 1392]}
Probab=98.45  E-value=1.6e-06  Score=57.97  Aligned_cols=181  Identities=12%  Similarity=0.030  Sum_probs=109.0

Q ss_pred             CCEEEEEECCCCCCCHHH---HHHHHHCCCCCEEEEECCC-CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             865899973778771688---9999837935089870898-768999999998599299981766568987787855446
Q gi|254780558|r  170 GARIAIVVSGLGISQTGT---QRAINLLPANITLAFASNG-NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLK  245 (396)
Q Consensus       170 ~~riAIVIddlG~~~~~~---~~ai~~LP~~vT~A~~P~~-~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~  245 (396)
                      ...|+|-+|| |.+...+   ...+.+.-.+.||-+.... ....+.+++..+.||||-.|-      |...      -+
T Consensus        44 ~k~VaLTFDD-G~~~~~t~~ll~~L~~~~i~ATfFv~g~~~~~~p~~~~~~~~~GheIg~Ht------~~H~------~l  110 (235)
T d2j13a1          44 KKDIYLTFDN-GYENGYTGKILDVLKEKKVPATFFVTGHYIKTQKDLLLRMKDEGHIIGNHS------WSHP------DF  110 (235)
T ss_dssp             SCEEEEEEEE-SSCCSCHHHHHHHHHHHTCCEEEEECHHHHHHCHHHHHHHHHTTCEEEECC------SSCC------CG
T ss_pred             CCEEEEEEEC-CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEEEE------CCCC------CH
T ss_conf             9879999876-898465699999999849987999926764338899997643890875331------5777------72


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEE--CC---CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf             789989999999999985589359800--12---3000049899999999985069289974976322678989870994
Q gi|254780558|r  246 VTQTVQQLLNRLRYSLRRGTGYFGVMN--YR---GAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLP  320 (396)
Q Consensus       246 ~~~~~~~~~~~l~~~l~~~p~~vGvnN--hm---Gs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp  320 (396)
                      ..++.+++.+-+......+-...|...  ++   ++.+  +.    .+.+.+++.|+.++.-...  +            
T Consensus       111 ~~ls~~~~~~ei~~~~~~l~~~~G~~~~~~~rpp~G~~--~~----~~~~~l~~~Gy~~~~w~~~--~------------  170 (235)
T d2j13a1         111 TAVNDEKLREELTSVTEEIKKVTGQKEVKYVRPPRGVF--SE----RTLALTKEMGYYNVFWSLA--F------------  170 (235)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHCCSCCCEECCGGGEE--CH----HHHHHHHHTTCEEECCSEE--C------------
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH--HH----HHHHHHHHCCCEEEECCCC--C------------
T ss_conf             23799999999999999999985335565566871443--04----6689999819857626888--7------------


Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHHHHHHHHHHHCCCEEEEHHHHHHC
Q ss_conf             6984588628999999999999999999871948999808-8788999999975688769189967774306
Q gi|254780558|r  321 YMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVISQWLQQEHVRDVSVVPLSCLAKL  391 (396)
Q Consensus       321 ~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~  391 (396)
                         .|--.|...+.+.|..++.+    ..+.| .|.+.|. ++.|+++|...++.++++|+++|++|+|++.
T Consensus       171 ---~Dw~~~~~~~~~~~~~~~~~----~~~~g-~IillHd~~~~t~~aL~~li~~lk~~Gy~fvtl~ell~~  234 (235)
T d2j13a1         171 ---LDWKVDEQRGWQYAHNNVMT----MIHPG-SILLLHAISKDNAEALAKIIDDLREKGYHFKSLDDLVKS  234 (235)
T ss_dssp             ---CCC----------------------CCTT-BEEEECCCSTTHHHHHHHHHHHHHHTTCEEECHHHHHHT
T ss_pred             ---CCCCCCCCHHHHHHHHHHHH----CCCCC-CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHC
T ss_conf             ---77765431049999999995----37999-489845999479999999999999789999886998612


No 3  
>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=98.37  E-value=6.4e-05  Score=47.87  Aligned_cols=171  Identities=12%  Similarity=0.113  Sum_probs=104.4

Q ss_pred             EEEEEECCCCCCCHHH---HHHHHHCCCCCEEEEEC-CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             5899973778771688---99998379350898708-9876899999999859929998176656898778785544678
Q gi|254780558|r  172 RIAIVVSGLGISQTGT---QRAINLLPANITLAFAS-NGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVT  247 (396)
Q Consensus       172 riAIVIddlG~~~~~~---~~ai~~LP~~vT~A~~P-~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~  247 (396)
                      .|||-+||-. +...+   .+.+.+...+.||-+.. ....-.+.+++..+.||||--|-      |..      .-+..
T Consensus         2 ~VaLTFDDgp-~~~~~~~il~~L~~~~i~aTfFv~g~~~~~~~~~~~~~~~~GheignHt------~~H------~~~~~   68 (196)
T d2c1ia1           2 VVALTFNDGP-NPATTPQVLETLAKYDIKATFFVLGKNVSGNEDLVKRIKSEGHVVGNHS------WSH------PILSQ   68 (196)
T ss_dssp             EEEEEEESCC-CTTTHHHHHHHHHHTTCCCEEEECGGGTTTCHHHHHHHHHTTCEEEECC------SSC------CCGGG
T ss_pred             EEEEEEECCC-CCCCHHHHHHHHHHCCCCEEEEEECHHHHHCCHHHHHHCCCCEEEECCC------CCC------CCHHC
T ss_conf             7999982799-8163999999999869979999975544538477886167874772455------677------53100


Q ss_pred             CCHHHHHHHHHHHHHHCCCCEE-----EEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEE
Q ss_conf             9989999999999985589359-----80012300004989999999998506928997497632267898987099469
Q gi|254780558|r  248 QTVQQLLNRLRYSLRRGTGYFG-----VMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYM  322 (396)
Q Consensus       248 ~~~~~~~~~l~~~l~~~p~~vG-----vnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~  322 (396)
                      ++.++++..+.++...+-...|     .---.|+ +  +..       .++..|+-++                      
T Consensus        69 ~~~~~~~~ei~~~~~~i~~~~G~~~~~fr~P~g~-~--~~~-------~~~~lg~~~v----------------------  116 (196)
T d2c1ia1          69 LSLDEAKKQITDTEDVLTKVLGSSSKLMRPPYGA-I--TDD-------IRNSLDLSFI----------------------  116 (196)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHSCCCCEECCGGGC-C--CHH-------HHHTSSCEEE----------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH-C--CHH-------HHHHHHCCEE----------------------
T ss_conf             9999999999999999999758997544386023-1--999-------9998535168----------------------


Q ss_pred             EEEEE-EC-CCCCHHHHHHHHHHHHHHHHHCCEEEEEEE-CCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCC
Q ss_conf             84588-62-899999999999999999987194899980-887889999999756887691899677743064
Q gi|254780558|r  323 VADLY-LD-DQVDRDKIREKLKGLEEIARTTGQAIGVAV-AFDESIEVISQWLQQEHVRDVSVVPLSCLAKLS  392 (396)
Q Consensus       323 ~~dvf-LD-~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh-~~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~~  392 (396)
                      ..++. .| +..+...|..+..+    ..++|. |.+.| .++.|+++|...++.++++|+++|+++++++-.
T Consensus       117 ~~~~~~~D~~~~~~~~i~~~~~~----~~~~g~-IiL~Hd~~~~t~~~L~~li~~lk~~Gy~fvtl~e~l~~~  184 (196)
T d2c1ia1         117 MWDVDSLDWKSKNEASILTEIQH----QVANGS-IVLMHDIHSPTVNALPRVIEYLKNQGYTFVTIPEMLNTR  184 (196)
T ss_dssp             CCSEECCHHHHCCHHHHHHHHHH----HCCTTE-EEEEETTSHHHHHHHHHHHHHHHHTTCEECCHHHHHGGG
T ss_pred             EECCCCCCCCCCCHHHHHHHHHH----CCCCCE-EEEEECCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCC
T ss_conf             61124443444699999999984----548992-899858928799999999999998899998889976677


No 4  
>d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA {Bacillus subtilis [TaxId: 1423]}
Probab=98.32  E-value=3.4e-06  Score=55.87  Aligned_cols=181  Identities=12%  Similarity=0.027  Sum_probs=111.0

Q ss_pred             CCEEEEEECCCCCCCHHH---HHHHHHCCCCCEEEEEC-CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             865899973778771688---99998379350898708-98768999999998599299981766568987787855446
Q gi|254780558|r  170 GARIAIVVSGLGISQTGT---QRAINLLPANITLAFAS-NGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLK  245 (396)
Q Consensus       170 ~~riAIVIddlG~~~~~~---~~ai~~LP~~vT~A~~P-~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~  245 (396)
                      .-.|+|-+||- .+...+   .+.+.+.-.+.||-+.- +.....+++++..+.||||-.|-      |..      .-+
T Consensus        42 ~K~V~LTFDDG-p~~~~~~~il~~L~~~~i~aTfFv~g~~~~~~~~~~~~~~~~GheIgnHt------~~H------~~~  108 (235)
T d1ny1a_          42 EKTIYLTFDNG-YENGYTPKVLDVLKKHRVTGTFFVTGHFVKDQPQLIKRMSDEGHIIGNHS------FHH------PDL  108 (235)
T ss_dssp             SSEEEEEEEES-SCCSCHHHHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECC------SSC------CCG
T ss_pred             CCEEEEEEECC-CCCCCHHHHHHHHHHCCCCEEEECCHHHHHHCHHHHHHHHHCCEEEECCC------CCC------CCC
T ss_conf             88699999578-99666899999999769987971328878769899998762384894250------546------782


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEE-----CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf             789989999999999985589359800-----123000049899999999985069289974976322678989870994
Q gi|254780558|r  246 VTQTVQQLLNRLRYSLRRGTGYFGVMN-----YRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLP  320 (396)
Q Consensus       246 ~~~~~~~~~~~l~~~l~~~p~~vGvnN-----hmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp  320 (396)
                      ..++.+++.+-|...-..+-...|...     ..++.+  +.    .+++.+++.|+-.++-.-.               
T Consensus       109 ~~~s~~~~~~ei~~~~~~i~~~~G~~~~~~~RpP~g~~--~~----~~~~~l~~~Gy~~v~w~~d---------------  167 (235)
T d1ny1a_         109 TTKTADQIQDELDSVNEEVYKITGKQDNLYLRPPRGVF--SE----YVLKETKRLGYQTVFWSVA---------------  167 (235)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHSCCCCCEECCGGGEE--CH----HHHHHHHHTTCEEBCCSBC---------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CH----HHHHHHHHCCCEEEEEEEC---------------
T ss_conf             31899999999999999999975214334204787643--34----6789999729969987742---------------


Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHHHHHHHHHHHCCCEEEEHHHHHHC
Q ss_conf             6984588628999999999999999999871948999808-8788999999975688769189967774306
Q gi|254780558|r  321 YMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVISQWLQQEHVRDVSVVPLSCLAKL  391 (396)
Q Consensus       321 ~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~  391 (396)
                        ..|-..++......|.+++.+   .+ +.| +|.+.|. ++.|+++|...++.|+++|+++|++|+|+..
T Consensus       168 --~~Dw~~~~~~~~~~~~~~~~~---~~-~~G-~IvL~Hd~~~~t~~aL~~lI~~lk~~Gy~fvtl~ell~~  232 (235)
T d1ny1a_         168 --FVDWKINNQKGKKYAYDHMIK---QA-HPG-AIYLLHTVSRDNAEALDDAITDLKKQGYTFKSIDDLMFE  232 (235)
T ss_dssp             --CSCCCGGGCCCHHHHHHHHHH---TC-CTT-EEEEECSCSTTHHHHHHHHHHHHHHHTCEEECHHHHHHH
T ss_pred             --CCCCCCCCCHHHHHHHHHHHH---CC-CCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEHHHHCCC
T ss_conf             --664445560418999999983---56-899-689987997009999999999999789999886994058


No 5  
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Probab=98.28  E-value=0.00014  Score=45.78  Aligned_cols=185  Identities=10%  Similarity=0.026  Sum_probs=106.9

Q ss_pred             CEEEEEECCCCCCCHHHHH---HHHHCCCCCEEEEECC------CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf             6589997377877168899---9983793508987089------876899999999859929998176656898778785
Q gi|254780558|r  171 ARIAIVVSGLGISQTGTQR---AINLLPANITLAFASN------GNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDS  241 (396)
Q Consensus       171 ~riAIVIddlG~~~~~~~~---ai~~LP~~vT~A~~P~------~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp  241 (396)
                      -.|||-+|| |.+. .+.+   .+.+...+.||-+...      .....+.+++..+.||||-.|-      |..     
T Consensus        14 ~~VaLTFDD-Gp~~-~t~~il~~L~~~~i~aTFFv~g~~i~~~~~~~~p~~~~~~~~~GheIgnHt------~~H-----   80 (220)
T d2iw0a1          14 GLVALTYDD-GPFT-FTPQLLDILKQNDVRATFFVNGNNWANIEAGSNPDTIRRMRADGHLVGSHT------YAH-----   80 (220)
T ss_dssp             SEEEEEEES-CSCT-THHHHHHHHHHHTCCCEEEECSBSSSBTTSTTHHHHHHHHHHTTCEEEECC------SSC-----
T ss_pred             CEEEEEEEC-CCCH-HHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHCHHHHHHHHHCCCEEECCC------CCC-----
T ss_conf             989998707-9846-499999999986997899996554566514449999999983672772021------356-----


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-C---CCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf             54467899899999999999855893598001-2---3000049899999999985069289974976322678989870
Q gi|254780558|r  242 YTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNY-R---GAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKL  317 (396)
Q Consensus       242 ~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNh-m---Gs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~  317 (396)
                       .-+..++.+++.+.+.+.-..+-...|..-. +   .+.+  +.    .+.+.++++|+-+++-  +-.|         
T Consensus        81 -~~~~~ls~~~~~~ei~~~~~~i~~~~g~~~~~fR~P~g~~--~~----~~~~~l~~~G~~~v~w--~~d~---------  142 (220)
T d2iw0a1          81 -PDLNTLSSADRISQMRQLEEATRRIDGFAPKYMRAPYLSC--DA----GCQGDLGGLGYHIIDT--NLDT---------  142 (220)
T ss_dssp             -CCGGGSCHHHHHHHHHHHHHHHHHHHSCEESEECCGGGCC--CH----HHHHHHHHTTCEEECC--SEEC---------
T ss_pred             -CCHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH--HH----HHHHHHHHCCCEEEEC--CCCC---------
T ss_conf             -5465516688889999999999996399974346716778--67----7899999649989937--6355---------


Q ss_pred             CCCEEEEEEEECC-CCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHH-HHHHHHHHHCCCEEEEHHHHHHCCC
Q ss_conf             9946984588628-999999999999999999871948999808-87889999-9997568876918996777430647
Q gi|254780558|r  318 NLPYMVADLYLDD-QVDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVI-SQWLQQEHVRDVSVVPLSCLAKLSS  393 (396)
Q Consensus       318 gvp~~~~dvfLD~-~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L-~~w~~~l~~~gi~lVpvS~l~~~~~  393 (396)
                            .| +..+ .........++.+-...+.+.|..|.+.|- ++.|...+ ...++.|+++|+++|+|++|+....
T Consensus       143 ------~D-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvL~HD~~~~t~~~~l~~ii~~lk~~Gy~fvtl~ell~~~~  214 (220)
T d2iw0a1         143 ------KD-YENNKPETTHLSAEKFNNELSADVGANSYIVLSHDVHEQTVVSLTQKLIDTLKSKGYRAVTVGECLGDAP  214 (220)
T ss_dssp             ------CT-TTSCSTTTHHHHHHHHHHHSCSCGGGCCEEEEECTTSHHHHHTHHHHHHHHHHHTTCEECCHHHHTTCCG
T ss_pred             ------CC-CCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCH
T ss_conf             ------31-3468974268899999999964248998799847996425999999999999987999988899635533


No 6  
>d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces lividans [TaxId: 1916]}
Probab=98.28  E-value=3.2e-05  Score=49.77  Aligned_cols=170  Identities=15%  Similarity=0.032  Sum_probs=108.3

Q ss_pred             CEEEEEECCCCCCCHHHHH---HHHHCCCCCEEEEECCCCCH---HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             6589997377877168899---99837935089870898768---99999999859929998176656898778785544
Q gi|254780558|r  171 ARIAIVVSGLGISQTGTQR---AINLLPANITLAFASNGNSL---DRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTL  244 (396)
Q Consensus       171 ~riAIVIddlG~~~~~~~~---ai~~LP~~vT~A~~P~~~~~---~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L  244 (396)
                      ..|||-+|| |.+. .+.+   .+.+--.+.||-+.  +...   .+++++..+.||||-.|-      |..      .-
T Consensus         5 g~VaLTFDD-Gp~~-~t~~il~~L~~~~v~aTFFv~--G~~~~~~p~~~~~~~~~GheIgnHs------~~H------~~   68 (192)
T d2cc0a1           5 GYVGLTFDD-GPSG-STQSLLNALRQNGLRATMFNQ--GQYAAQNPSLVRAQVDAGMWVANHS------YTH------PH   68 (192)
T ss_dssp             EEEEEEEES-CCST-THHHHHHHHHHTTCCCEEEEC--HHHHHHCHHHHHHHHHTTCEEEECC------SSC------CC
T ss_pred             CEEEEEEEC-CCCH-HHHHHHHHHHHCCCCEEEEEE--CCCCCCCCHHHHHHHHHHHHHHHHH------CCC------CC
T ss_conf             989998726-9825-399999999983981999995--6452337246676764114877512------428------64


Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEEC----CCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf             67899899999999999855893598001----23000049899999999985069289974976322678989870994
Q gi|254780558|r  245 KVTQTVQQLLNRLRYSLRRGTGYFGVMNY----RGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLP  320 (396)
Q Consensus       245 ~~~~~~~~~~~~l~~~l~~~p~~vGvnNh----mGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp  320 (396)
                      +..++.++++..|.+....+-...|..-.    -++.+  +.    .+.+.+++.|+-.++-                  
T Consensus        69 ~~~ls~~~~~~ei~~~~~~i~~~~g~~~~~fR~P~g~~--~~----~~~~~l~~~G~~~v~w------------------  124 (192)
T d2cc0a1          69 MTQLGQAQMDSEISRTQQAIAGAGGGTPKLFRPPYGET--NA----TLRSVEAKYGLTEVIW------------------  124 (192)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHTTSCCCSEECCGGGCC--CH----HHHHHHHHTTCEECCC------------------
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH--HH----HHHHHHHHCCCCCCCC------------------
T ss_conf             00100788999999999999997688753403863654--25----5789999759845428------------------


Q ss_pred             EEEEEE-EEC-CCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHHHHHHHHHHHCCCEEEEHHHHHH
Q ss_conf             698458-862-8999999999999999999871948999808-878899999997568876918996777430
Q gi|254780558|r  321 YMVADL-YLD-DQVDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVISQWLQQEHVRDVSVVPLSCLAK  390 (396)
Q Consensus       321 ~~~~dv-fLD-~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~  390 (396)
                          ++ ..| ...+.+.|.+.+.+     .++|. |.+-|- ++.|+++|...++.|+++|+++|.+|++.-
T Consensus       125 ----~vd~~Dw~~~~~~~i~~~v~~-----~~~G~-IiL~Hd~~~~t~~aL~~ii~~lk~~Gy~fvtlse~~~  187 (192)
T d2cc0a1         125 ----DVDSQDWNNASTDAIVQAVSR-----LGNGQ-VILMHDWPANTLAAIPRIAQTLAGKGLCSGMISPQTG  187 (192)
T ss_dssp             ----SEECCGGGTCCHHHHHHHHHT-----CCTTC-EEEEESSCHHHHHHHHHHHHHHHHTTEEECEECTTTS
T ss_pred             ----CCCCCCCCCCCHHHHHHHHHC-----CCCCE-EEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf             ----998565666899999999726-----58996-9997189520999999999999988998997266768


No 7  
>d2c71a1 c.6.2.3 (A:480-683) Xylanase XynA C-terminal domain {Clostridium thermocellum [TaxId: 1515]}
Probab=97.91  E-value=2.6e-05  Score=50.28  Aligned_cols=170  Identities=14%  Similarity=0.093  Sum_probs=99.5

Q ss_pred             EEEEEECCCCCCCHHHH---HHHHHCCCCCEEEEECC-C-CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             58999737787716889---99983793508987089-8-7689999999985992999817665689877878554467
Q gi|254780558|r  172 RIAIVVSGLGISQTGTQ---RAINLLPANITLAFASN-G-NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKV  246 (396)
Q Consensus       172 riAIVIddlG~~~~~~~---~ai~~LP~~vT~A~~P~-~-~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~  246 (396)
                      .|||-+||- .+..-+.   +.+.+.-.+.||-+.-. . .+..+.+++..+.||||--|-      |..      .-+.
T Consensus         2 ~VaLTfDDG-p~~~~t~~il~~L~~~~i~aTFFv~G~~~~~~~~~~~k~i~~~GheIg~Ht------~~H------~~~~   68 (204)
T d2c71a1           2 LVALTFDDG-PDNVLTARVLDKLDKYNVKATFMVVGQRVNDSTAAIIRRMVNSGHEIGNHS------WSY------SGMA   68 (204)
T ss_dssp             EEEEEEESC-CCHHHHHHHHHHHHHHTCCCEEEECGGGCSHHHHHHHHHHHHTTCEEEECC------SSS------SCCT
T ss_pred             EEEEEEECC-CCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCEEECCCC------CCC------CCHH
T ss_conf             799998579-981549999999998698099999562300138999998750576870242------456------4554


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEEE----CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEE
Q ss_conf             89989999999999985589359800----12300004989999999998506928997497632267898987099469
Q gi|254780558|r  247 TQTVQQLLNRLRYSLRRGTGYFGVMN----YRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYM  322 (396)
Q Consensus       247 ~~~~~~~~~~l~~~l~~~p~~vGvnN----hmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~  322 (396)
                      .++.++++..+..+-..+-.+.|..-    +-+..+  +..    +++.++   ..+.-                     
T Consensus        69 ~~s~~~~~~ei~~~~~~l~~~~G~~~~~fR~P~g~~--~~~----~~~~~~---~~~~~---------------------  118 (204)
T d2c71a1          69 NMSPDQIRKSIADTNAVIQKYAGTTPKFFRPPNLET--SPT----LFNNVD---LVFVG---------------------  118 (204)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHSCCCSEECCGGGCC--CHH----HHHHCC---SEEBC---------------------
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CHH----HHHHHH---HHHHC---------------------
T ss_conf             429999999999999999997589987445897411--989----999851---01313---------------------


Q ss_pred             EEEEE-EC--CCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC----CHHHHHHHHHHHHHHHHCCCEEEEHHHHHHC
Q ss_conf             84588-62--8999999999999999999871948999808----8788999999975688769189967774306
Q gi|254780558|r  323 VADLY-LD--DQVDRDKIREKLKGLEEIARTTGQAIGVAVA----FDESIEVISQWLQQEHVRDVSVVPLSCLAKL  391 (396)
Q Consensus       323 ~~dvf-LD--~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~----~p~Ti~~L~~w~~~l~~~gi~lVpvS~l~~~  391 (396)
                        ++. .|  ...+...+...+.+    ..++|.. .+.|-    ...|+++|...++.|+++|+++|++++++..
T Consensus       119 --~~~~~Dw~~~~~~~~~~~~v~~----~~~~G~I-vL~Hd~~~~~~~t~~aL~~li~~lk~~Gy~fvtl~e~l~~  187 (204)
T d2c71a1         119 --GLTANDWIPSTTAEQRAAAVIN----GVRDGTI-ILLHDVQPEPHPTPEALDIIIPTLKSRGYEFVTLTELFTL  187 (204)
T ss_dssp             --CBCCSTTCTTSCHHHHHHHHHH----HCCTTBE-EEEESCCSSSCCHHHHHHHHHHHHHHTTCEECCHHHHHHH
T ss_pred             --CEECCCCCCCCCHHHHHHHHHH----CCCCCCE-EEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCC
T ss_conf             --3010226878889999999982----6799858-9981478865569999999999999889999888998607


No 8  
>d2i5ia1 c.6.2.8 (A:2-262) Uncharacterized protein EF3048 {Enterococcus faecalis [TaxId: 1351]}
Probab=96.67  E-value=0.019  Score=32.21  Aligned_cols=213  Identities=10%  Similarity=0.001  Sum_probs=131.2

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHC---CCCCEEEEECCCCCHHHHHHHHHH--CCCCEEEECCCCCC-CCCCCCCC-----
Q ss_conf             58999737787716889999837---935089870898768999999998--59929998176656-89877878-----
Q gi|254780558|r  172 RIAIVVSGLGISQTGTQRAINLL---PANITLAFASNGNSLDRWMKEAKK--KGQEAILQIPMQAF-DESYNEDD-----  240 (396)
Q Consensus       172 riAIVIddlG~~~~~~~~ai~~L---P~~vT~A~~P~~~~~~~~~~~Ar~--~G~EvllhlPMEp~-~~~~~~pG-----  240 (396)
                      ||-|-.||+|++....+ +|.++   ..-=+.+++..++...+.++.++.  .+-.|=||+=+=.. ..|-..+.     
T Consensus         4 ~lii~ADDfG~s~~vn~-~I~~~~~~G~its~s~mvn~p~~~~a~~~~~~~~~~~~vGlHl~LT~~~~~p~~~~~~~~~l   82 (261)
T d2i5ia1           4 KLIINADDFGYTPAVTQ-GIIEAHKRGVVTSTTALPTSPYFLEAMESARISAPTLAIGVHLTLTLNQAKPILPREMVPSL   82 (261)
T ss_dssp             EEEEEEEEETSSHHHHH-HHHHHHHSSSCCEEEECTTSTTHHHHHHHHHHHCTTCEEEEEECSCCTTCCCSSCTTTSGGG
T ss_pred             EEEEECCCCCCCHHHHH-HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHCCCC
T ss_conf             89995766879978889-99999987986167864389069999999987688876025677525778788982435554


Q ss_pred             ---------CCCCCCCCCHHHHHHHHHHHHHHCCC----CEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             ---------55446789989999999999985589----35980012300004989999999998506928997497632
Q gi|254780558|r  241 ---------SYTLKVTQTVQQLLNRLRYSLRRGTG----YFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPR  307 (396)
Q Consensus       241 ---------p~~L~~~~~~~~~~~~l~~~l~~~p~----~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~  307 (396)
                               ...+.-..+.++++.-++.-++++-.    -.-|..||+.-.. .+.....+++..+++|+-+........
T Consensus        83 ~~~~g~f~~~~~~~~~~~~~~v~~Ei~aQi~~f~~~g~~P~hiDgH~h~h~~-~p~~~~~~~~la~~y~lp~r~~~~~~~  161 (261)
T d2i5ia1          83 VDEAGYFWHQSIFEEKVNLEEVYNEWDAQIISFMKSGRRPDHIDSHHNVHGK-NKKLLGVALALARKYQLPLRNASRSIE  161 (261)
T ss_dssp             BCTTSCBCCHHHHTTTCCHHHHHHHHHHHHHHHGGGSSCCSCEEEGGGGGGS-SHHHHHHHHHHHHHHTCCBCCCCCSGG
T ss_pred             CCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHCC-CHHHHHHHHHHHHHHCCCEEECCCCCC
T ss_conf             4867750144776523899999999999999999809998612300122303-678999999999996998885421112


Q ss_pred             CH-HHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCH--HHHH--------------HH--
Q ss_conf             26-78989870994698458862899999999999999999987194899980887--8899--------------99--
Q gi|254780558|r  308 NL-TRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVAFD--ESIE--------------VI--  368 (396)
Q Consensus       308 Sv-a~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p--~Ti~--------------~L--  368 (396)
                      .. .....+....+......|.+...+.+.+.+.|+.+.  ....|....++||--  +.+.              +|  
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~eim~HPG~~d~~l~~~~~~~~~R~~E~~~L~s  239 (261)
T d2i5ia1         162 TKDYLELYQDVRTPDEMLYQFYDKAISTETILQLLDMVV--CSEGEVFEINCHPAFIDTILQNQSGYCMPRIREVEILTS  239 (261)
T ss_dssp             GGGGGGGTTTSCCCSEEECCCSGGGCSHHHHHHHHHHHH--HSSCSEEEEEECCCCBCHHHHHHCSSCTHHHHHHHHHTC
T ss_pred             CCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCCCCCHHHHHCCCCCCCHHHHHHHHCC
T ss_conf             245578851788752103222356579999999999876--348983699960688986665268764315999999749


Q ss_pred             HHHHHHHHHCCCEEEEHHHH
Q ss_conf             99975688769189967774
Q gi|254780558|r  369 SQWLQQEHVRDVSVVPLSCL  388 (396)
Q Consensus       369 ~~w~~~l~~~gi~lVpvS~l  388 (396)
                      .++...+++.||+||.-.+|
T Consensus       240 ~~~~~~l~~~~I~L~~~~~l  259 (261)
T d2i5ia1         240 QEVKEAIEERGILLANYESL  259 (261)
T ss_dssp             HHHHHHHHHTTCEEECGGGG
T ss_pred             HHHHHHHHHCCCEEECHHHC
T ss_conf             99999999879999617633


No 9  
>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=96.65  E-value=0.0078  Score=34.69  Aligned_cols=184  Identities=12%  Similarity=0.092  Sum_probs=110.2

Q ss_pred             HHHHHHHHCCCCCEEEEECCC-CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--
Q ss_conf             889999837935089870898-76899999999859929998176656898778785544678998999999999998--
Q gi|254780558|r  186 GTQRAINLLPANITLAFASNG-NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLR--  262 (396)
Q Consensus       186 ~~~~ai~~LP~~vT~A~~P~~-~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~--  262 (396)
                      .-.+.+.++-.+.||.+.-.. ..-.+.++...+.||||..|=      |..      .....++.++.++.+..+++  
T Consensus        82 Rll~ll~~~~i~aTff~~g~~ae~~P~~v~~i~~~GhEi~~HG------~~h------~~~~~l~~~~e~~~i~~~~~~l  149 (301)
T d1z7aa1          82 RLLKLFKRRNVPLTVFAVAMAAQRNPEVIRAMVADGHEICSHG------YRW------IDYQYMDEAQEREHMLEAIRIL  149 (301)
T ss_dssp             HHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECC------SSS------SCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHCCCEEECCC------CCC------CCCCCCCHHHHHHHHHHHHHHH
T ss_conf             8998999719985411439999978499999987073210374------323------2334478899999999999999


Q ss_pred             -HCCCC--EEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHH--HHHH----HHCCCEE--EEEEEECC-
Q ss_conf             -55893--59800123000049899999999985069289974976322678--9898----7099469--84588628-
Q gi|254780558|r  263 -RGTGY--FGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTR--VLAP----KLNLPYM--VADLYLDD-  330 (396)
Q Consensus       263 -~~p~~--vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~--~~A~----~~gvp~~--~~dvfLD~-  330 (396)
                       ++.|.  +|-   ....++.+. .    ...|++.|+.|.-|-..-.- -+  .+..    -.-||+.  ..|.++-. 
T Consensus       150 ~~~tG~~p~G~---~~p~~~~~~-t----~~lL~e~Gf~Y~sd~~~dD~-Py~~~~~~~~~~~l~iP~~~~~~D~~~~~~  220 (301)
T d1z7aa1         150 TELTGQRPVGW---YTGRTGPNT-R----RLVMEEGGFLYDSDTYDDDL-PYWDPASTAEKPHLVIPYTLDTNDMRFTQV  220 (301)
T ss_dssp             HHHHSSCCCEE---CCSSCCTTH-H----HHHHHHCCCSEECCCCCCSS-CEECTTCCSSSCCEECCCCSSSBGGGGGST
T ss_pred             HHHCCCCCCCC---CCCCCCCCC-H----HHHHHHCCCEEECCCCCCCC-CCCEECCCCCCCEEEECCCCCCCHHHHHHC
T ss_conf             97606785131---589998751-9----99998509779887878887-641124688887698325033451456520


Q ss_pred             --CCCH----HHHHHHHHHHHHHHHHCCEEEEEE-ECC----HHHHHHHHHHHHHHHHC-CCEEEEHHHHHH
Q ss_conf             --9999----999999999999998719489998-088----78899999997568876-918996777430
Q gi|254780558|r  331 --QVDR----DKIREKLKGLEEIARTTGQAIGVA-VAF----DESIEVISQWLQQEHVR-DVSVVPLSCLAK  390 (396)
Q Consensus       331 --~~~~----~~I~~qL~~l~~~Ar~~G~AI~ig-h~~----p~Ti~~L~~w~~~l~~~-gi~lVpvS~l~~  390 (396)
                        ..+.    +.+..+|+.+.+-+...|..+.|+ ||+    |.-+.+|.+++..+.+. ||-+...+++.+
T Consensus       221 ~~~~~~~~~~~~~~d~fd~l~~e~~~~~~~~~l~lHP~i~G~P~Ri~~Le~~l~~i~~~~dVW~at~~eIA~  292 (301)
T d1z7aa1         221 QGFNNGEQFFQYLKDAFDVLYEEGATAPKMLSIGLHCRLIGRPARMAALERFIQYAQSHDKVWFARREDIAR  292 (301)
T ss_dssp             TCCSSHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEETTTTTSHHHHHHHHHHHHHHHTSSSEEECCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEECCHHHHHH
T ss_conf             798988999999999999999836888887999638753388899999999999997399989807999999


No 10 
>d1v6ta_ c.6.2.5 (A:) Hypothetical protein PH0986 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=96.64  E-value=0.02  Score=32.07  Aligned_cols=195  Identities=16%  Similarity=0.186  Sum_probs=131.9

Q ss_pred             CCCCCCC----HHHHHHHHHCCCCCEEEEECCCC------CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3778771----68899998379350898708987------6899999999859929998176656898778785544678
Q gi|254780558|r  178 SGLGISQ----TGTQRAINLLPANITLAFASNGN------SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVT  247 (396)
Q Consensus       178 ddlG~~~----~~~~~ai~~LP~~vT~A~~P~~~------~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~  247 (396)
                      -|||.+.    .+.+++|+  |+ ||-|=+.-+-      .-++.++.|.+.|-.|=-|-     +||+.+ |=+=-...
T Consensus         7 ~DlGE~~g~~~~g~D~~lm--~~-issaNIACG~HAGD~~~m~~tv~lA~~~~V~IGAHP-----sypD~~-gFGRr~~~   77 (254)
T d1v6ta_           7 SDLGESFGRYKLGLDEEVM--KY-ITSANVACGWHAGDPLVMRKTVRLAKENDVQVGAHP-----GYPDLM-GFGRRYMK   77 (254)
T ss_dssp             EEECCCBTTBCCSCHHHHT--TT-CSEEEEECSSSSCCHHHHHHHHHHHHHTTCEEEEEC-----CCSCTT-TTTCSCCC
T ss_pred             CCCCCCCCCCCCCCCHHHH--HH-HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-----CCCCCC-CCCCCCCC
T ss_conf             2279887887778818998--67-525888517456779999999999998299743799-----986733-36755466


Q ss_pred             CCHHHHHHHHHHHHHHCCCC--------EEEEECCCCC---CCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHHHH
Q ss_conf             99899999999999855893--------5980012300---004989999999998506--9289974976322678989
Q gi|254780558|r  248 QTVQQLLNRLRYSLRRGTGY--------FGVMNYRGAM---LLSNKESAEVIFKEFAKR--GLLFFDDGSSPRNLTRVLA  314 (396)
Q Consensus       248 ~~~~~~~~~l~~~l~~~p~~--------vGvnNhmGs~---~t~~~~~m~~vl~~l~~r--gL~flDs~Ts~~Sva~~~A  314 (396)
                      ++++++.+.+..-++.+-..        ..|--| |..   ...|+...+.+++.++..  +|.++   +-+.|...+.|
T Consensus        78 ~s~~el~~~i~~Qi~al~~~a~~~g~~l~hVKpH-GALYN~a~~D~~lA~ai~~ai~~~~~~l~l~---~~~~s~~~~~A  153 (254)
T d1v6ta_          78 LTPEEARNYILYQVGALYAFAKAEGLELQHVKPH-GALYNAMVKEEDLARAVIEGILDFDKDLILV---TLSNSRVADIA  153 (254)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCC-HHHHHHHHHCHHHHHHHHHHHHHHCTTCEEE---EETTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEH-HHHHHHHHCCHHHHHHHHHHHHHHCCCCCEE---ECCCCHHHHHH
T ss_conf             7889999999999999999999859905798311-9998888538999999999999737675376---54883799999


Q ss_pred             HHHCCCEEEEEEEECCC-----------------CCHHHHHHHHHHHHHHHHH------CCEEEE-----EE--ECCHHH
Q ss_conf             87099469845886289-----------------9999999999999999987------194899-----98--088788
Q gi|254780558|r  315 PKLNLPYMVADLYLDDQ-----------------VDRDKIREKLKGLEEIART------TGQAIG-----VA--VAFDES  364 (396)
Q Consensus       315 ~~~gvp~~~~dvfLD~~-----------------~~~~~I~~qL~~l~~~Ar~------~G~AI~-----ig--h~~p~T  364 (396)
                      ++.|+++.. ..|.|-.                 .|++.+.+|   +.+++++      .|.-|-     ||  .-.|+.
T Consensus       154 ~~~Gl~~~~-E~FADR~Y~~dG~Lv~R~~~gAvi~d~~~~~~q---v~~mv~~g~V~ti~G~~I~i~adTICVHGDtp~A  229 (254)
T d1v6ta_         154 EEMGLKVAH-EVFADRAYNPDGTLVPRGRPGAVIEDKEEIAER---VISMVKDGGIRAINGEWVDLKVDTICVHGDNPKA  229 (254)
T ss_dssp             HHHTCCEEE-EECTTBCBCTTSCBCC-----CBCCCHHHHHHH---HHHHHHHSEEECTTSCEEECCCSEEECCCSSHHH
T ss_pred             HHHCCCEEE-EEEEECCCCCCCCEEEECCCCCCCCCHHHHHHH---HHHHHHCCCEEECCCCEEECCCCEEEECCCCHHH
T ss_conf             872776223-353143488999887602444435789999999---9999867988915898874367989979999789


Q ss_pred             HHHHHHHHHHHHHCCCEEEEHHHHH
Q ss_conf             9999999756887691899677743
Q gi|254780558|r  365 IEVISQWLQQEHVRDVSVVPLSCLA  389 (396)
Q Consensus       365 i~~L~~w~~~l~~~gi~lVpvS~l~  389 (396)
                      ++.++..-..|++.||++.|+++++
T Consensus       230 v~~a~~ir~~L~~~gi~I~pl~~~~  254 (254)
T d1v6ta_         230 VEITSYIRKVLEEEGVKIVPMKEFI  254 (254)
T ss_dssp             HHHHHHHHHHHHHTTCEECCGGGTC
T ss_pred             HHHHHHHHHHHHHCCCEEEEHHHCC
T ss_conf             9999999999998899996568809


No 11 
>d1xw8a_ c.6.2.5 (A:) Hypothetical protein YbgL {Escherichia coli [TaxId: 562]}
Probab=95.12  E-value=0.086  Score=28.11  Aligned_cols=193  Identities=12%  Similarity=0.091  Sum_probs=128.1

Q ss_pred             CCCCCCCHHHHHHHHHCCCCCEEEEECCC---C---CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             37787716889999837935089870898---7---68999999998599299981766568987787855446789989
Q gi|254780558|r  178 SGLGISQTGTQRAINLLPANITLAFASNG---N---SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQ  251 (396)
Q Consensus       178 ddlG~~~~~~~~ai~~LP~~vT~A~~P~~---~---~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~  251 (396)
                      -|||.+. +..++|+.+   ||-|=+.-+   -   .-++.++.|.+.|-.|=-|-     +||+.+ |=+=-...++++
T Consensus         7 ~DlGE~~-g~D~~lm~~---i~saNIACG~HaGd~~~m~~tv~lA~~~~V~iGAHP-----sypD~~-gFGRr~~~~s~~   76 (247)
T d1xw8a_           7 ADLGEGC-ASDAELLTL---VSSANIACGFHAGDAQIMQACVREAIKNGVAIGAHP-----SFPDRE-NFGRSAMQLPPE   76 (247)
T ss_dssp             EEESSSC-SCHHHHHHH---CSEEEEECSSSSCCHHHHHHHHHHHHHHTCEEEEEC-----CCC--------CCCCCCHH
T ss_pred             CCCCCCC-CCHHHHHHH---HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-----CCCCHH-CCCCCCCCCCHH
T ss_conf             4468886-888999867---636888606456779999999999998399743789-----988610-067556889999


Q ss_pred             HHHHHHHHHHHHCCCC--------EEEEECCCCC---CCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHHHHHHHC
Q ss_conf             9999999999855893--------5980012300---004989999999998506--92899749763226789898709
Q gi|254780558|r  252 QLLNRLRYSLRRGTGY--------FGVMNYRGAM---LLSNKESAEVIFKEFAKR--GLLFFDDGSSPRNLTRVLAPKLN  318 (396)
Q Consensus       252 ~~~~~l~~~l~~~p~~--------vGvnNhmGs~---~t~~~~~m~~vl~~l~~r--gL~flDs~Ts~~Sva~~~A~~~g  318 (396)
                      |+.+.+.+-++.+-..        ..|--| |..   ...|+...+.+++.++..  +|.++   ..+.|...+.|++.|
T Consensus        77 el~~~v~~Qi~al~~~~~~~g~~l~hvKpH-GALYn~~~~d~~lA~~i~~ai~~~~~~l~l~---~~~~s~~~~~A~~~G  152 (247)
T d1xw8a_          77 TVYAQTLYQIGALATIARAQGGVMRHVKPH-GMLYNQAAKEAQLADAIARAVYACDPALILV---GLAGSELIRAGKQYG  152 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCEEEECCC-HHHHHHHTTCHHHHHHHHHHHHHHCTTCEEE---EETTSHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEEECHH-HHHHHHHCCCHHHHHHHHHHHHHHCCCHHHC---CCCCCHHHHHHHHCC
T ss_conf             999999999999999999859824563344-9998775046899999999999848324430---478859999998749


Q ss_pred             CCEEEEEEEECCCCCH----------H----HHHHHHHHHHHHHHHC------CEEEE-----EE--ECCHHHHHHHHHH
Q ss_conf             9469845886289999----------9----9999999999999871------94899-----98--0887889999999
Q gi|254780558|r  319 LPYMVADLYLDDQVDR----------D----KIREKLKGLEEIARTT------GQAIG-----VA--VAFDESIEVISQW  371 (396)
Q Consensus       319 vp~~~~dvfLD~~~~~----------~----~I~~qL~~l~~~Ar~~------G~AI~-----ig--h~~p~Ti~~L~~w  371 (396)
                      +++.. ..|.|-.-+.          .    .....+++..++++.+      |.-|-     ||  .-.|..++.++..
T Consensus       153 l~~~~-E~FADR~Y~~dG~Lv~R~~~gAvi~d~~~~~~qv~~m~~~g~V~ti~G~~I~l~adTICVHGDtp~Av~~ak~I  231 (247)
T d1xw8a_         153 LTTRE-EVFADRGYQADGSLVPRSQSGALIENEEQALAQTLEMVQHGRVKSITGEWATVAAQTVCLHGDGEHALAFARRL  231 (247)
T ss_dssp             CCEEE-EECTTSCBCTTSSBCCTTTCC-----CTTHHHHHHHHHHHSEEECTTSCEEECCCCEEECCCCC-CCHHHHHHH
T ss_pred             CCEEE-EEECCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCEECCCCCEEEECCCCHHHHHHHHHH
T ss_conf             96423-33102433776341211355456689799999999999779878678998107889798799997899999999


Q ss_pred             HHHHHHCCCEEEEH
Q ss_conf             75688769189967
Q gi|254780558|r  372 LQQEHVRDVSVVPL  385 (396)
Q Consensus       372 ~~~l~~~gi~lVpv  385 (396)
                      -..|++.||++.|+
T Consensus       232 r~~L~~~gI~I~~~  245 (247)
T d1xw8a_         232 RSAFAEKGIVVAAL  245 (247)
T ss_dssp             HHHC----CCBCCC
T ss_pred             HHHHHHCCCEEECC
T ss_conf             99999889989518


No 12 
>d2dfaa1 c.6.2.5 (A:1-250) Hypothetical protein TTHB195 {Thermus thermophilus [TaxId: 274]}
Probab=94.92  E-value=0.11  Score=27.50  Aligned_cols=191  Identities=16%  Similarity=0.136  Sum_probs=124.2

Q ss_pred             CCCCCCC----HHHHHHHHHCCCCCEEEEECCC---C---CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3778771----6889999837935089870898---7---6899999999859929998176656898778785544678
Q gi|254780558|r  178 SGLGISQ----TGTQRAINLLPANITLAFASNG---N---SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVT  247 (396)
Q Consensus       178 ddlG~~~----~~~~~ai~~LP~~vT~A~~P~~---~---~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~  247 (396)
                      -|||.+.    .+.+++|+  |+ ||-|=+.-+   -   .-++.++.|++.|-.|=-|-     +||+.+ |=+=-...
T Consensus         7 ~DlGE~~g~~~~g~D~~lm--~~-i~saNIACG~HaGD~~~m~~tv~lA~~~~V~IGAHP-----sypD~~-gFGRr~~~   77 (250)
T d2dfaa1           7 ADAGESYGAFAYGHDREIF--PL-VSSANLACGFHGGSPGRILEAVRLAKAHGVAVGAHP-----GFPDLV-GFGRREMA   77 (250)
T ss_dssp             EEECCCBTTBCCSCHHHHT--TT-CSEEEEECSSSSCCHHHHHHHHHHHHHTTCEEEEEC-----CCSCTT-TTTCSCCC
T ss_pred             CCCCCCCCCCCCCCHHHHH--HH-HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-----CCCCHH-HCCCCCCC
T ss_conf             0168887887778809998--67-635777517446779999999999998298401688-----976243-35887678


Q ss_pred             CCHHHHHHHHHHHHHHCCCC---EEE-EECC---CC---CCCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCHHHHHHH
Q ss_conf             99899999999999855893---598-0012---30---0004989999999998506--92899749763226789898
Q gi|254780558|r  248 QTVQQLLNRLRYSLRRGTGY---FGV-MNYR---GA---MLLSNKESAEVIFKEFAKR--GLLFFDDGSSPRNLTRVLAP  315 (396)
Q Consensus       248 ~~~~~~~~~l~~~l~~~p~~---vGv-nNhm---Gs---~~t~~~~~m~~vl~~l~~r--gL~flDs~Ts~~Sva~~~A~  315 (396)
                      ++++++.+.+..-+..+-..   .|+ .+|.   |.   ....|+...+.+++.++..  +|.++   +-+.|.-.++|+
T Consensus        78 ~s~~el~~~i~~Qi~al~~~a~~~g~~l~hVKpHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~---~~~~s~~~~~a~  154 (250)
T d2dfaa1          78 LSPEEVYADVLYQIGALSAFLKAEGLPLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLV---VLPGTVYEEEAR  154 (250)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEE---ECTTSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEE---ECCCHHHHHHHH
T ss_conf             99899999999999999999998399414532018876456508899999999998618885388---507515787776


Q ss_pred             HHCCCEEEEEEEECCCC-----------------CHHHHHHHHHHHHHHHHHC------CE-------EEEEEECCHHHH
Q ss_conf             70994698458862899-----------------9999999999999999871------94-------899980887889
Q gi|254780558|r  316 KLNLPYMVADLYLDDQV-----------------DRDKIREKLKGLEEIARTT------GQ-------AIGVAVAFDESI  365 (396)
Q Consensus       316 ~~gvp~~~~dvfLD~~~-----------------~~~~I~~qL~~l~~~Ar~~------G~-------AI~igh~~p~Ti  365 (396)
                      +.|+++.. ..|.|..-                 +++.+   +++..++++++      |.       -|-|-.-.|+.+
T Consensus       155 ~~Gl~~~~-E~FADR~Y~~dG~LvpR~~~gAvi~d~~~~---~~qv~~~~~~~~V~t~~G~~i~i~adTICVHgDtp~Av  230 (250)
T d2dfaa1         155 KAGLRVVL-EAFPERAYLRSGQLAPRSMPGSWITDPEEA---ARRALRMVLEGKVEALDGGEVAVRADTLCIHGDNPNAP  230 (250)
T ss_dssp             HTTCCEEE-EECTTBCBCTTSSBCCTTSTTCBCCCHHHH---HHHHHHHHHTSEEEBTTSSEEECCCSEEEEC---CCHH
T ss_pred             HCCCCEEE-EEEECCCCCCCCCEEEECCCCCCCCCHHHH---HHHHHHHHHCCCEEECCCCEEECCCCEEEECCCCHHHH
T ss_conf             46983566-774044488999789852676535786999---99999999789879068988525689899789997799


Q ss_pred             HHHHHHHHHHHHCCCEEEE
Q ss_conf             9999997568876918996
Q gi|254780558|r  366 EVISQWLQQEHVRDVSVVP  384 (396)
Q Consensus       366 ~~L~~w~~~l~~~gi~lVp  384 (396)
                      +.++..-..|++.||++.|
T Consensus       231 ~~ak~ir~~L~~~gi~I~~  249 (250)
T d2dfaa1         231 EVARAVREALEQAGVEVRA  249 (250)
T ss_dssp             HHHHHHHHHHHTTTCEECC
T ss_pred             HHHHHHHHHHHHCCCEEEC
T ss_conf             9999999999988696816


No 13 
>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}
Probab=72.98  E-value=2.5  Score=18.88  Aligned_cols=81  Identities=10%  Similarity=0.072  Sum_probs=37.6

Q ss_pred             CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-------HCCCCEEEE--ECCCCC
Q ss_conf             76899999999859929998176656898778785544678998999999999998-------558935980--012300
Q gi|254780558|r  207 NSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLR-------RGTGYFGVM--NYRGAM  277 (396)
Q Consensus       207 ~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~-------~~p~~vGvn--NhmGs~  277 (396)
                      .+.+++++.|+.-|-.+++..|...             ...-+.++..+++...|.       +..=.+++=  ||+++.
T Consensus        84 ~~~~~~i~~a~~lG~~~i~~~~~~~-------------~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~  150 (278)
T d1i60a_          84 TEFKGMMETCKTLGVKYVVAVPLVT-------------EQKIVKEEIKKSSVDVLTELSDIAEPYGVKIALEFVGHPQCT  150 (278)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCBC-------------SSCCCHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCTTBS
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCC
T ss_conf             9999999999974998455666668-------------888777999999999999999999973982464312222324


Q ss_pred             CCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             004989999999998506928997
Q gi|254780558|r  278 LLSNKESAEVIFKEFAKRGLLFFD  301 (396)
Q Consensus       278 ~t~~~~~m~~vl~~l~~rgL~flD  301 (396)
                      + .+...+..+++.+...+++++=
T Consensus       151 ~-~~~~~~~~ll~~v~~~~vg~~~  173 (278)
T d1i60a_         151 V-NTFEQAYEIVNTVNRDNVGLVL  173 (278)
T ss_dssp             S-CSHHHHHHHHHHHCCTTEEEEE
T ss_pred             C-CCHHHHHHHHHHHHCCCCCCCC
T ss_conf             6-9999999999875033431345


No 14 
>d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]}
Probab=72.58  E-value=2.5  Score=18.83  Aligned_cols=139  Identities=12%  Similarity=0.067  Sum_probs=85.1

Q ss_pred             CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf             68999999998599299981766568987787855446789989999999999985589359800123000049899999
Q gi|254780558|r  208 SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEV  287 (396)
Q Consensus       208 ~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~  287 (396)
                      ...++++...+.|+..+= +          .-|      ..+.++...+++...+.+..-+.+.=-....++- ..++ .
T Consensus        20 ~~~~~~~~~~~~Gf~~~K-i----------KvG------~~~~~~D~~~v~~ir~~~g~~~~l~vDaN~~~~~-~~A~-~   80 (244)
T d2chra1          20 DLDSAVEMIERRRHNRFK-V----------KLG------FRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDE-QVAS-V   80 (244)
T ss_dssp             HHHHHHHHHHTTSCCEEE-E----------ECS------SSCHHHHHHHHHHHHHHTTTTSEEEEECTTCCCT-HHHH-H
T ss_pred             HHHHHHHHHHHCCCCEEE-E----------ECC------CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH-HHHH-H
T ss_conf             999999999957999799-9----------839------9998999999999998467886699918988505-7788-8


Q ss_pred             HHHHHHCCCCEEEECCCCCCCH--HHHHHHHHCCCEEEEEEEEC--------------C-CCCHHHH--HHHHHHHHHHH
Q ss_conf             9999850692899749763226--78989870994698458862--------------8-9999999--99999999999
Q gi|254780558|r  288 IFKEFAKRGLLFFDDGSSPRNL--TRVLAPKLNLPYMVADLYLD--------------D-QVDRDKI--REKLKGLEEIA  348 (396)
Q Consensus       288 vl~~l~~rgL~flDs~Ts~~Sv--a~~~A~~~gvp~~~~dvfLD--------------~-~~~~~~I--~~qL~~l~~~A  348 (396)
                      +++.|.+.+++|+-.-..+...  -.++.+..++|.+.-.-+.+              - ..+...+  ...+.++..+|
T Consensus        81 ~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i~~~a  160 (244)
T d2chra1          81 YIPELEALGVELIEQPVGRENTQALRRLSDNNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVA  160 (244)
T ss_dssp             HHHHHHTTTCCEEECCSCSSCHHHHHHHHHHCSSEEEESSSCCSHHHHHHHHTTTCCSEECCCHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             89887540688872012002411334414220356640344432101333310122578731234454568899999999


Q ss_pred             HHCCEEEEEEECCHHHH
Q ss_conf             87194899980887889
Q gi|254780558|r  349 RTTGQAIGVAVAFDESI  365 (396)
Q Consensus       349 r~~G~AI~igh~~p~Ti  365 (396)
                      +.+|.-+.++|.+...|
T Consensus       161 ~~~gi~~~~~~~~~~~i  177 (244)
T d2chra1         161 EASGIASYGGTMLDSTI  177 (244)
T ss_dssp             HHHTCEECCCCCSCCHH
T ss_pred             HHCCCCEEECCCCCCCC
T ss_conf             97599745213432211


No 15 
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}
Probab=57.88  E-value=4.9  Score=17.04  Aligned_cols=100  Identities=15%  Similarity=0.107  Sum_probs=62.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCC--------CCEEEEECCCCCC-CCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH
Q ss_conf             4678998999999999998558--------9359800123000-049899999999985069289974976322678989
Q gi|254780558|r  244 LKVTQTVQQLLNRLRYSLRRGT--------GYFGVMNYRGAML-LSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLA  314 (396)
Q Consensus       244 L~~~~~~~~~~~~l~~~l~~~p--------~~vGvnNhmGs~~-t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A  314 (396)
                      +...++.+++..|+........        ....+.+..++.. ......+..+......-.+.++|+.+...+      
T Consensus        73 ~~~E~~~~~~~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~------  146 (274)
T d1nlfa_          73 LPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHI------  146 (274)
T ss_dssp             EESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCC------
T ss_pred             EECCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHCC------
T ss_conf             85123499999999998623686665312333232145674203578999999887526765896281354226------


Q ss_pred             HHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEE-EEECCHH
Q ss_conf             870994698458862899999999999999999987194899-9808878
Q gi|254780558|r  315 PKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIG-VAVAFDE  363 (396)
Q Consensus       315 ~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~-igh~~p~  363 (396)
                                    .++.+...+...+.++..+|++.|.+|. +.|....
T Consensus       147 --------------~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K~  182 (274)
T d1nlfa_         147 --------------EEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKG  182 (274)
T ss_dssp             --------------SCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred             --------------CCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCC
T ss_conf             --------------652322568999988777764479754013100555


No 16 
>d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]}
Probab=54.50  E-value=5.5  Score=16.69  Aligned_cols=149  Identities=15%  Similarity=0.081  Sum_probs=80.5

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHCCCCEE-EECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             7935089870898768999999998599299-981766568987787855446789989999999999985589359800
Q gi|254780558|r  194 LPANITLAFASNGNSLDRWMKEAKKKGQEAI-LQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMN  272 (396)
Q Consensus       194 LP~~vT~A~~P~~~~~~~~~~~Ar~~G~Evl-lhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnN  272 (396)
                      +|.-.|++.--......+..+...+.||-++ +.+            |      ..+.++-.+++....+.++.=+-+.=
T Consensus         6 ipv~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKv------------G------~~~~~~Di~~i~~ir~~~g~~~~l~v   67 (242)
T d1muca1           6 LEVAWTLASGDTARDIAEARHMLEIRRHRVFKLKI------------G------ANPVEQDLKHVVTIKRELGDSASVRV   67 (242)
T ss_dssp             EEBCEEECCSCHHHHHHHHHHHHHTTSCSEEEEEC------------S------SSCHHHHHHHHHHHHHHHGGGSEEEE
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE------------C------CCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             78889961799199999999999978997799997------------9------99979999999999998589987987


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHH--HHHHHHHCCCEEEEEEEECCC---------------CCHH
Q ss_conf             12300004989999999998506928997497632267--898987099469845886289---------------9999
Q gi|254780558|r  273 YRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLT--RVLAPKLNLPYMVADLYLDDQ---------------VDRD  335 (396)
Q Consensus       273 hmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva--~~~A~~~gvp~~~~dvfLD~~---------------~~~~  335 (396)
                      -...+++  ......+++.|.+.|++|+-.-.......  ..+.+..++|.+.-.-+.+..               .+..
T Consensus        68 DaN~~~~--~~~A~~~~~~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~~pIa~~E~~~~~~~~~~~i~~~~~d~~~~d~~  145 (242)
T d1muca1          68 DVNQYWD--ESQAIRACQVLGDNGIDLIEQPISRINRGGQVRLNQRTPAPIMADESIESVEDAFSLAADGAASIFALKIA  145 (242)
T ss_dssp             ECTTCBC--HHHHHHHHHHHHHTTCCCEECCBCTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHH
T ss_pred             ECCCCCC--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHCCCCCCCCCCCC
T ss_conf             4697886--78889988886432587760640000144566664312202321343200122133332021222355533


Q ss_pred             HH--HHHHHHHHHHHHHCCEEEEEEECCH
Q ss_conf             99--9999999999987194899980887
Q gi|254780558|r  336 KI--REKLKGLEEIARTTGQAIGVAVAFD  362 (396)
Q Consensus       336 ~I--~~qL~~l~~~Ar~~G~AI~igh~~p  362 (396)
                      .+  ...+.++..+|+++|.-+.+++...
T Consensus       146 ~~GGit~~~~i~~~A~~~gi~~~~~~~~~  174 (242)
T d1muca1         146 KNGGPRAVLRTAQIAEAAGIGLYGGTMLE  174 (242)
T ss_dssp             HHTSHHHHHHHHHHHHHHTCEEEECCSSC
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             21027899888889985798724566634


No 17 
>d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium [TaxId: 90371]}
Probab=54.47  E-value=5.5  Score=16.69  Aligned_cols=186  Identities=14%  Similarity=0.234  Sum_probs=106.1

Q ss_pred             EEEEEECCCCCCCHHHHH-HHH--------HCC-CCCEEEEE-------------CCCCCHHHHHHHHHHCCCCEEEECC
Q ss_conf             589997377877168899-998--------379-35089870-------------8987689999999985992999817
Q gi|254780558|r  172 RIAIVVSGLGISQTGTQR-AIN--------LLP-ANITLAFA-------------SNGNSLDRWMKEAKKKGQEAILQIP  228 (396)
Q Consensus       172 riAIVIddlG~~~~~~~~-ai~--------~LP-~~vT~A~~-------------P~~~~~~~~~~~Ar~~G~EvllhlP  228 (396)
                      |-||++-.+|-+...+.+ +|.        .+| .+|-+||+             -..|+..+..+..+++|++-++=+|
T Consensus         1 k~aillv~fGs~~~e~~~~~i~~i~~~v~~~~Pd~~V~~afts~~~~~~~~~~~~~~~p~~~eal~~l~~~G~~~ivV~P   80 (257)
T d1qgoa_           1 KKALLVVSFGTSYHDTCEKNIVACERDLAASCPDRDLFRAFTSGMIIRKLRQRDGIDIDTPLQALQKLAAQGYQDVAIQS   80 (257)
T ss_dssp             CEEEEEEECCCSCHHHHHHHHHHHHHHHHHTCTTSEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf             93899995899965669999999999999988899188542105899988762487789999999999867998799986


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCC--------CCEEE
Q ss_conf             6656898778785544678998999999999998558935980012300004989999999998506--------92899
Q gi|254780558|r  229 MQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKR--------GLLFF  300 (396)
Q Consensus       229 MEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~r--------gL~fl  300 (396)
                      +=             |..+..-+++...+...-..++..     ++|.-+..+...+..+++.+.+.        .+.|+
T Consensus        81 l~-------------l~~G~~~~di~~~i~~~~~~~~~i-----~~~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~lllv  142 (257)
T d1qgoa_          81 LH-------------IINGDEYEKIVREVQLLRPLFTRL-----TLGVPLLSSHNDYVQLMQALRQQMPSLRQTEKVVFM  142 (257)
T ss_dssp             CC-------------SBCSHHHHHHHHHHHHHGGGSSEE-----EECCCSBSSHHHHHHHHHHHHTTCCCCCTTEEEEEE
T ss_pred             CC-------------CCCCCHHHHHHHHHHHHHHHCCCE-----EEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf             24-------------425516999999999867548926-----983777899799999999999843567888589999


Q ss_pred             ECCCCCCCHHH-----HHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCE-EEEEEECC---HH--HHHHH-
Q ss_conf             74976322678-----989870994698458862899999999999999999987194-89998088---78--89999-
Q gi|254780558|r  301 DDGSSPRNLTR-----VLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQ-AIGVAVAF---DE--SIEVI-  368 (396)
Q Consensus       301 Ds~Ts~~Sva~-----~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G~-AI~igh~~---p~--Ti~~L-  368 (396)
                      .-++...+...     ....+.+-+...  -++..+++.+...++|.+       +|. -|.+. ||   +.  +..-| 
T Consensus       143 gHGs~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~P~~~~~l~~l~~-------~g~~~vvv~-P~fl~~G~H~~~Di~  212 (257)
T d1qgoa_         143 GHGASHHAFAAYACLDHMMTAQRFPARV--GAVESYPEVDILIDSLRD-------EGVTGVHLM-PLMLVAGDHAINDMA  212 (257)
T ss_dssp             ECCCSHHHHHHHHHHHHHHHHHTCSEEE--EETTSSSCHHHHHHHHHH-------HTCCEEEEE-ECSSSCCHHHHTTTT
T ss_pred             ECCCCCHHHHHHHHHHHHHHHCCCCEEE--EEEECCCCHHHHHHHHHH-------CCCCEEEEE-EHHHHCCCHHHHHHH
T ss_conf             4798816689999999999964898279--997359987899999986-------499879998-517833622665344


Q ss_pred             ----HHHHHHHHHCCCEEEEH
Q ss_conf             ----99975688769189967
Q gi|254780558|r  369 ----SQWLQQEHVRDVSVVPL  385 (396)
Q Consensus       369 ----~~w~~~l~~~gi~lVpv  385 (396)
                          ..|-..+++.|++..++
T Consensus       213 ~~~~~s~~~~l~~~g~~v~~~  233 (257)
T d1qgoa_         213 SDDGDSWKMRFNAAGIPATPW  233 (257)
T ss_dssp             SSSTTSHHHHHHHTTCCEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEEE
T ss_conf             566689998778639745231


No 18 
>d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]}
Probab=53.90  E-value=5.7  Score=16.63  Aligned_cols=142  Identities=8%  Similarity=0.066  Sum_probs=83.2

Q ss_pred             HHHHHHHHCCCCEE-EECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHH
Q ss_conf             99999998599299-98176656898778785544678998999999999998558935980012300004989999999
Q gi|254780558|r  211 RWMKEAKKKGQEAI-LQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIF  289 (396)
Q Consensus       211 ~~~~~Ar~~G~Evl-lhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl  289 (396)
                      +..+..++.|+..+ +++            |      ..+.++-.++++...+.+..-+.+.=-...+++  ......++
T Consensus        23 e~~~~~~~~G~~~~KiKv------------G------~~~~~~Di~~v~~ir~~~g~~~~l~vDaN~~~~--~~~A~~~~   82 (243)
T d1nu5a1          23 SALEMIETRRHNRFKVKL------------G------ARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWD--EQTASIWI   82 (243)
T ss_dssp             HHHHHHHTTSCSEEEEEC------------S------SSCHHHHHHHHHHHHHHHGGGCEEEEECTTCCC--HHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEEEE------------C------CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC--CHHHHHHH
T ss_conf             999999967999799992------------9------999799999999999984866665887788760--11588888


Q ss_pred             HHHHCCCCEEEECCCCCCCHH--HHHHHHHCCCEEEEEEEEC--------------CC-CCHHHH--HHHHHHHHHHHHH
Q ss_conf             998506928997497632267--8989870994698458862--------------89-999999--9999999999987
Q gi|254780558|r  290 KEFAKRGLLFFDDGSSPRNLT--RVLAPKLNLPYMVADLYLD--------------DQ-VDRDKI--REKLKGLEEIART  350 (396)
Q Consensus       290 ~~l~~rgL~flDs~Ts~~Sva--~~~A~~~gvp~~~~dvfLD--------------~~-~~~~~I--~~qL~~l~~~Ar~  350 (396)
                      +.|.+.+++|+-.-.......  .++.+..++|.+.-.-+.+              -. .+...+  .....+...+|+.
T Consensus        83 ~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~ipIa~gE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~i~~~a~~  162 (243)
T d1nu5a1          83 PRLEEAGVELVEQPVPRANFGALRRLTEQNGVAILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEA  162 (243)
T ss_dssp             HHHHHHTCCEEECCSCTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             87430046655334321011221100000011101223332100011102445455322121246656799999999998


Q ss_pred             CCEEEEEEECC--HHHHHHHHHHH
Q ss_conf             19489998088--78899999997
Q gi|254780558|r  351 TGQAIGVAVAF--DESIEVISQWL  372 (396)
Q Consensus       351 ~G~AI~igh~~--p~Ti~~L~~w~  372 (396)
                      +|.-++++|.+  +.++.+.....
T Consensus       163 ~gi~~~~~~~~~s~i~~~a~~h~~  186 (243)
T d1nu5a1         163 AGISSYGGTMLDSTVGTAAALHVY  186 (243)
T ss_dssp             HTCEEEECCSSCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             599743340100025589999999


No 19 
>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]}
Probab=45.01  E-value=7.8  Score=15.76  Aligned_cols=65  Identities=12%  Similarity=0.168  Sum_probs=48.2

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             35089870898768999999998599299981766568987787855446789989999999999985589359800123
Q gi|254780558|r  196 ANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRG  275 (396)
Q Consensus       196 ~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmG  275 (396)
                      +.|+..|.|.+...+...+..+++.++|.+.++                  ..++.++.+.|..+..+--..--+.+..+
T Consensus         2 ~~v~v~fsp~~~~~~~i~~~I~~A~~~I~I~~~------------------~~~~~~i~~aL~~a~~rGV~Vril~~~~~   63 (152)
T d1byra_           2 PSVQVGYSPEGSARVLVLSAIDSAKTSIRMMAY------------------SFTAPDIMKALVAAKKRGVDVKIVIDERG   63 (152)
T ss_dssp             CEEEEEEETTTHHHHHHHHHHHHCSSEEEEEES------------------SBCCHHHHHHHHHHHHTTCEEEEEEESTT
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEE------------------EECCHHHHHHHHHHHHCCCEEEEEEEEEC
T ss_conf             965899899860999999999848869999997------------------53498999999999864985999997302


Q ss_pred             CCC
Q ss_conf             000
Q gi|254780558|r  276 AML  278 (396)
Q Consensus       276 s~~  278 (396)
                      ...
T Consensus        64 ~~~   66 (152)
T d1byra_          64 NTG   66 (152)
T ss_dssp             CCS
T ss_pred             CCC
T ss_conf             344


No 20 
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]}
Probab=44.41  E-value=7.9  Score=15.70  Aligned_cols=95  Identities=16%  Similarity=0.199  Sum_probs=62.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-----------------CCCCCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             467899899999999999855893598001230-----------------000498999999999850692899749763
Q gi|254780558|r  244 LKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGA-----------------MLLSNKESAEVIFKEFAKRGLLFFDDGSSP  306 (396)
Q Consensus       244 L~~~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs-----------------~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~  306 (396)
                      +....+..++.+.|..+.. ...-+|+.+|..-                 ....++.-.+..+..+++.|.-.+=-    
T Consensus        74 V~I~vs~~Dil~al~~a~~-~~~kiavV~~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~v~~l~~~G~~vVVG----  148 (186)
T d2pjua1          74 ILIKPSGYDVLQFLAKAGK-LTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVG----  148 (186)
T ss_dssp             EEECCCHHHHHHHHHHTTC-TTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEE----
T ss_pred             EEECCCHHHHHHHHHHHHH-HCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEC----
T ss_conf             9970887689999999997-58978999177625699999999599648999638899999999999879989999----


Q ss_pred             CCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             22678989870994698458862899999999999999999987
Q gi|254780558|r  307 RNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIART  350 (396)
Q Consensus       307 ~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~  350 (396)
                      .+.+..+|+++|+++    +||-   +.+.|++.|+++.++||-
T Consensus       149 ~~~~~~~A~~~Gl~~----vli~---S~eSv~~Ai~~A~~lar~  185 (186)
T d2pjua1         149 AGLITDLAEEAGMTG----IFIY---SAATVRQAFSDALDMTRM  185 (186)
T ss_dssp             SHHHHHHHHHTTSEE----EESS---CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCE----EEEE---CHHHHHHHHHHHHHHHHC
T ss_conf             859999999849978----9984---789999999999999733


No 21 
>d1nxia_ d.58.47.1 (A:) Hypothetical protein VC0424 {Vibrio cholerae [TaxId: 666]}
Probab=43.05  E-value=8.3  Score=15.57  Aligned_cols=93  Identities=12%  Similarity=0.115  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEE
Q ss_conf             9999999999985--58935980012300004989999999998506928997497632267898987099469845886
Q gi|254780558|r  251 QQLLNRLRYSLRR--GTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYL  328 (396)
Q Consensus       251 ~~~~~~l~~~l~~--~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfL  328 (396)
                      +++++.|...+..  -+...-...|-  -+..|...++.++..+.+.|+-+.|..-..        .+-|-+...-++..
T Consensus        19 ~~n~eIl~~L~e~Gddl~~~~~IEH~--~~f~d~~~lek~a~~~~~~Gyev~~~~e~e--------~EdG~~~~~~~~~~   88 (132)
T d1nxia_          19 EETRDIIQALLEDGSDPDALYEIEHH--LFAEDFDKLEKAAVEAFKMGFEVLEAEETE--------DEDGNKLLCFDATM   88 (132)
T ss_dssp             HHHHHHHHHHHHHTCCTTSCEEEEEE--EEESCHHHHHHHHHHHHHHTCCCBCCCCBC--------CSSCSSBEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEE--EEECCHHHHHHHHHHHHHCCCEEEECCCCC--------CCCCCEEEEEEEEE
T ss_conf             87999999999679987867566699--996999999999999998798586455255--------57897589999998


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCE
Q ss_conf             2899999999999999999987194
Q gi|254780558|r  329 DDQVDRDKIREKLKGLEEIARTTGQ  353 (396)
Q Consensus       329 D~~~~~~~I~~qL~~l~~~Ar~~G~  353 (396)
                      ....+.+.|.++-.++..+|++.|-
T Consensus        89 e~~l~~~~I~~~~~~L~~LA~~~~g  113 (132)
T d1nxia_          89 QSALDAKLIDEQVEKLVNLAEKFDI  113 (132)
T ss_dssp             EECSCHHHHHHHHHHHHHHHHHHTC
T ss_pred             ECCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             3478989999999999999999596


No 22 
>d2q8za1 c.1.2.3 (A:1-323) Protozoan orotidine monophosphate decarboxylase {Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]}
Probab=40.97  E-value=6.6  Score=16.20  Aligned_cols=17  Identities=18%  Similarity=0.081  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHCCCCEEE
Q ss_conf             89999999985992999
Q gi|254780558|r  209 LDRWMKEAKKKGQEAIL  225 (396)
Q Consensus       209 ~~~~~~~Ar~~G~Evll  225 (396)
                      +.+.++.+|..|+.|++
T Consensus       119 L~~~i~~~~~~g~~Vfl  135 (323)
T d2q8za1         119 LKNVFDYLYELNIPTIL  135 (323)
T ss_dssp             HHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHCCCCCEEEE
T ss_conf             99998762236862898


No 23 
>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}
Probab=39.17  E-value=9.6  Score=15.19  Aligned_cols=17  Identities=18%  Similarity=0.442  Sum_probs=8.6

Q ss_pred             HHHHHHHHHCCCCEEEE
Q ss_conf             99999999859929998
Q gi|254780558|r  210 DRWMKEAKKKGQEAILQ  226 (396)
Q Consensus       210 ~~~~~~Ar~~G~Evllh  226 (396)
                      +++.+.|++-|-..+.-
T Consensus        87 ~~~i~~a~~lG~~~v~~  103 (271)
T d2q02a1          87 EGLLRDAQGVGARALVL  103 (271)
T ss_dssp             HHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHCCCCEEEE
T ss_conf             99999999829968999


No 24 
>d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]}
Probab=36.28  E-value=11  Score=14.91  Aligned_cols=141  Identities=11%  Similarity=0.084  Sum_probs=70.3

Q ss_pred             CCCCCEEEEECCCC---CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             79350898708987---689999999985992999817665689877878554467899899999999999855893598
Q gi|254780558|r  194 LPANITLAFASNGN---SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGV  270 (396)
Q Consensus       194 LP~~vT~A~~P~~~---~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGv  270 (396)
                      ||.+|..++.=...   ...+.++.+++.|+..+= +          ..|+.      .   ..+++....+.+|... +
T Consensus         2 ~p~~~~~~~tv~~~tpe~~~~~a~~~~~~G~~~~K-i----------Kvg~~------~---d~~~i~~ir~~~~d~~-l   60 (208)
T d1jpdx1           2 LPETVITAQTVVIGTPDQMANSASTLWQAGAKLLK-V----------KLDNH------L---ISERMVAIRTAVPDAT-L   60 (208)
T ss_dssp             CCSEEEBCEEECSCCHHHHHHHHHHHHHTTCSEEE-E----------ECCSS------C---HHHHHHHHHHHCTTSE-E
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE-E----------ECCCC------C---HHHHHHHHHHHCCCCE-E
T ss_conf             99844655674789999999999999977999899-9----------77998------3---7999999997453658-9


Q ss_pred             EECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCC-CCHHHH------------
Q ss_conf             0012300004989999999998506928997497632267898987099469845886289-999999------------
Q gi|254780558|r  271 MNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQ-VDRDKI------------  337 (396)
Q Consensus       271 nNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~-~~~~~I------------  337 (396)
                      .=-.-.+++.+.  ...+++.|++.++.|+-.-........-...+..+|     +-+|.. .+...+            
T Consensus        61 ~vDaN~~~s~~~--A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~l~~~~p-----i~~~E~~~~~~~~~~l~~~~d~~~~  133 (208)
T d1jpdx1          61 IVDANESWRAEG--LAARCQLLADLGVAMLEQPLPAQDDAALENFIHPLP-----ICADESCHTRSNLKALKGRYEMVNI  133 (208)
T ss_dssp             EEECTTCCCSTT--HHHHHHHHHHTTCCEEECCSCTTSCGGGGSSCCSSC-----EEESTTCSSGGGHHHHBTTBSEEEE
T ss_pred             EEECCCCCCHHH--HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCC-----EECCCCCCCHHHHHHHHHCCCEEEE
T ss_conf             981543200167--899999887422002576689537899986611560-----3037886888898877621688996


Q ss_pred             -------HHHHHHHHHHHHHCCEEEEEEECCH
Q ss_conf             -------9999999999987194899980887
Q gi|254780558|r  338 -------REKLKGLEEIARTTGQAIGVAVAFD  362 (396)
Q Consensus       338 -------~~qL~~l~~~Ar~~G~AI~igh~~p  362 (396)
                             ..+..++..+|+.+|.-+.++....
T Consensus       134 d~~~~GGi~~~~~~a~~a~~~g~~~~~~~~~~  165 (208)
T d1jpdx1         134 KLDKTGGLTEALALATEARAQGFSLMLGCMLC  165 (208)
T ss_dssp             CHHHHTSHHHHHHHHHHHHHTTCEEEECCCSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCH
T ss_conf             88323989999999999998499066648732


No 25 
>d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]}
Probab=35.94  E-value=11  Score=14.87  Aligned_cols=141  Identities=11%  Similarity=0.128  Sum_probs=76.6

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHCCCCEE-EECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             7935089870898768999999998599299-981766568987787855446789989999999999985589359800
Q gi|254780558|r  194 LPANITLAFASNGNSLDRWMKEAKKKGQEAI-LQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMN  272 (396)
Q Consensus       194 LP~~vT~A~~P~~~~~~~~~~~Ar~~G~Evl-lhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~~p~~vGvnN  272 (396)
                      +|.-.|+.+...-....+.++.++++||..+ +++            |+.      .+   .+++......+..-+-+.=
T Consensus         5 ipvy~s~g~~~~~~~~~~~~~~~~~~Gf~~~Kikv------------g~~------~D---i~~i~~ir~~~g~~~~l~v   63 (242)
T d1sjda1           5 VPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKI------------EPG------WD---VEPVRAVRERFGDDVLLQV   63 (242)
T ss_dssp             EEBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEEC------------BTT------BS---HHHHHHHHHHHCTTSEEEE
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEC------------CCH------HH---HHHHHHHHHHHCCCEEEEE
T ss_conf             68448957989999999999999986999899977------------952------68---9999999987089813742


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHH--HHHHHHCCCEEEEEEEECCCCCHHHH-------------
Q ss_conf             123000049899999999985069289974976322678--98987099469845886289999999-------------
Q gi|254780558|r  273 YRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTR--VLAPKLNLPYMVADLYLDDQVDRDKI-------------  337 (396)
Q Consensus       273 hmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~--~~A~~~gvp~~~~dvfLD~~~~~~~I-------------  337 (396)
                      -.-..++.+. +.+ +.+ |...+++|+-.-..+.....  ++.+..++|.+.-..    ..+....             
T Consensus        64 DaN~~~~~~~-a~~-~~~-l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~pia~gE~----~~~~~~~~~~~~~~~~d~~~  136 (242)
T d1sjda1          64 DANTAYTLGD-APQ-LAR-LDPFGLLLIEQPLEEEDVLGHAELARRIQTPICLDES----IVSARAAADAIKLGAVQIVN  136 (242)
T ss_dssp             ECTTCCCGGG-HHH-HHT-TGGGCCSEEECCSCTTCHHHHHHHHTTCSSCEEESTT----CCSHHHHHHHHHTTCCSEEE
T ss_pred             CCCCCCCHHH-HHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC----CCCCHHHHHHHHCCCCCEEE
T ss_conf             2321222025-667-766-4012168887666555479999997605755323523----45621455452047667899


Q ss_pred             --------HHHHHHHHHHHHHCCEEEEEEECCH
Q ss_conf             --------9999999999987194899980887
Q gi|254780558|r  338 --------REKLKGLEEIARTTGQAIGVAVAFD  362 (396)
Q Consensus       338 --------~~qL~~l~~~Ar~~G~AI~igh~~p  362 (396)
                              ..+..+...+|.++|.-+.+++...
T Consensus       137 ~d~~~~GGit~~~~i~~~A~~~~i~~~~h~~~~  169 (242)
T d1sjda1         137 IKPGRVGGYLEARRVHDVCAAHGIPVWCGGMIE  169 (242)
T ss_dssp             ECTTTTTSHHHHHHHHHHHHHTTCCEEECCCCC
T ss_pred             ECCCCCCCCHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf             614447662145579999998799796046666


No 26 
>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.83  E-value=4.6  Score=17.19  Aligned_cols=12  Identities=17%  Similarity=0.653  Sum_probs=10.1

Q ss_pred             HHCCCCEEEECC
Q ss_conf             850692899749
Q gi|254780558|r  292 FAKRGLLFFDDG  303 (396)
Q Consensus       292 l~~rgL~flDs~  303 (396)
                      ||+||.||+++.
T Consensus         9 LKqrG~Ffv~~~   20 (31)
T d1x64a2           9 LKQKGYFFVEGE   20 (31)
T ss_dssp             TTTSCCEEETTE
T ss_pred             HHHCCEEEECCE
T ss_conf             313544885448


No 27 
>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]}
Probab=35.18  E-value=11  Score=14.80  Aligned_cols=18  Identities=11%  Similarity=0.304  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHCCCCEEEE
Q ss_conf             899999999859929998
Q gi|254780558|r  209 LDRWMKEAKKKGQEAILQ  226 (396)
Q Consensus       209 ~~~~~~~Ar~~G~Evllh  226 (396)
                      ..+..+.+++.|+++|++
T Consensus       142 ~~~l~~~c~~~glp~llE  159 (291)
T d1to3a_         142 VKEFNELCHSNGLLSIIE  159 (291)
T ss_dssp             HHHHHHHHHTTTCEEEEE
T ss_pred             HHHHHHHHHHCCCCCEEE
T ss_conf             999999999739961689


No 28 
>d1o98a2 c.76.1.3 (A:2-76,A:311-510) 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=33.88  E-value=11  Score=14.73  Aligned_cols=15  Identities=13%  Similarity=0.375  Sum_probs=7.3

Q ss_pred             EEEEEECCCCCCCHH
Q ss_conf             589997377877168
Q gi|254780558|r  172 RIAIVVSGLGISQTG  186 (396)
Q Consensus       172 riAIVIddlG~~~~~  186 (396)
                      -|-||+||+|++...
T Consensus         5 vvliilD~~G~~~~~   19 (275)
T d1o98a2           5 VALIILDGFALRDET   19 (275)
T ss_dssp             EEEEEETTCCCCSCC
T ss_pred             EEEEEECCCCCCCCC
T ss_conf             899998999878777


No 29 
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase  alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=33.80  E-value=12  Score=14.66  Aligned_cols=152  Identities=14%  Similarity=0.133  Sum_probs=82.3

Q ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             68658999737787716889999837935089870898768999999998599299981766568987787855446789
Q gi|254780558|r  169 SGARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQ  248 (396)
Q Consensus       169 ~~~riAIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~  248 (396)
                      ++.||+||=..=|.+... .+++.+..    +-+.+..+...+..+..          +|  ++.... +  |-.+..+.
T Consensus         2 ~G~rvaiit~sGG~~~l~-aD~~~~~G----l~l~~l~~~t~~~L~~~----------lp--~~~~~~-N--PlD~~~~~   61 (163)
T d2csua3           2 RGNKVAIMTNAGGPGVLT-ADELDKRG----LKLATLEEKTIEELRSF----------LP--PMAAVK-N--PVDMIASA   61 (163)
T ss_dssp             SSSEEEEEESCHHHHHHH-HHHHHTTT----CEECCCCHHHHHHHHHH----------SC--TTCEES-S--EEECCTTC
T ss_pred             CCCEEEEEECCHHHHHHH-HHHHHHCC----CCCCCCCHHHHHHHHHH----------CC--CCCCCC-C--CCCCCCCC
T ss_conf             997599997786899999-99999859----95689999999999976----------88--734678-7--41256889


Q ss_pred             CHHHHHHHHHHHHHHCCCCEEE-EECCC---CCCCCCHHHHHHHHHHHHCCC----CEEE-ECCCCCCCHHHHHHHHHCC
Q ss_conf             9899999999999855893598-00123---000049899999999985069----2899-7497632267898987099
Q gi|254780558|r  249 TVQQLLNRLRYSLRRGTGYFGV-MNYRG---AMLLSNKESAEVIFKEFAKRG----LLFF-DDGSSPRNLTRVLAPKLNL  319 (396)
Q Consensus       249 ~~~~~~~~l~~~l~~~p~~vGv-nNhmG---s~~t~~~~~m~~vl~~l~~rg----L~fl-Ds~Ts~~Sva~~~A~~~gv  319 (396)
                      +.+...+.++..++. +++-+| ..+.-   +... ....++.++..+++.+    +++. -.+... ..+.+.-++.|+
T Consensus        62 ~~~~~~~~l~~~~~d-~~vd~v~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~kpv~~~~~~~~~~-~~~~~~l~~~Gi  138 (163)
T d2csua3          62 RGEDYYRTAKLLLQD-PNVDMLIAICVVPTFAGMT-LTEHAEGIIRAVKEVNNEKPVLAMFMAGYVS-EKAKELLEKNGI  138 (163)
T ss_dssp             CHHHHHHHHHHHHHS-TTCSEEEEEEECCCSTTCC-SSHHHHHHHHHHHHHCCCCCEEEEEECTTTT-HHHHHHHHTTTC
T ss_pred             CHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCC-HHHHHHHHHHHHHHHCCCCCEEEEECCCCCH-HHHHHHHHHCCC
T ss_conf             989999999999759-8768798861257766555-8999999999999836997279998999876-999999998899


Q ss_pred             CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             469845886289999999999999999998719
Q gi|254780558|r  320 PYMVADLYLDDQVDRDKIREKLKGLEEIARTTG  352 (396)
Q Consensus       320 p~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar~~G  352 (396)
                      |+.         .+.+.--+.|..+.+.+|..|
T Consensus       139 p~f---------~~pe~a~~Al~~l~~~~r~~~  162 (163)
T d2csua3         139 PTY---------ERPEDVASAAYALVEQAKNVG  162 (163)
T ss_dssp             CEE---------SSHHHHHHHHHHHHHHHHHTT
T ss_pred             CCC---------CCHHHHHHHHHHHHHHHHCCC
T ss_conf             867---------999999999999999986679


No 30 
>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=32.56  E-value=8.9  Score=15.40  Aligned_cols=170  Identities=11%  Similarity=0.114  Sum_probs=87.0

Q ss_pred             EEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             99737787716889999837935089870898768999999998599299981766568987787855446789989999
Q gi|254780558|r  175 IVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLL  254 (396)
Q Consensus       175 IVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~  254 (396)
                      |.=-|.|.+... ..+....+..|| .|..........-+++.+.|..--+++=  -.||... +++             
T Consensus        66 VLDiGCG~G~~a-~~~a~~~g~~v~-git~s~~Q~~~a~~~~~~~g~~~~v~~~--~~d~~~~-~~~-------------  127 (285)
T d1kpga_          66 LLDVGCGWGATM-MRAVEKYDVNVV-GLTLSKNQANHVQQLVANSENLRSKRVL--LAGWEQF-DEP-------------  127 (285)
T ss_dssp             EEEETCTTSHHH-HHHHHHHCCEEE-EEESCHHHHHHHHHHHHTCCCCSCEEEE--ESCGGGC-CCC-------------
T ss_pred             EEEECCCCHHHH-HHHHHCCCCCEE-EEECCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCC-CCC-------------
T ss_conf             999357401888-988752896148-8714377899999998764111126888--7643213-344-------------


Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHH-------HHHHHHHCCCEEEEEEE
Q ss_conf             99999998558935980012300004989999999998506928997497632267-------89898709946984588
Q gi|254780558|r  255 NRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLT-------RVLAPKLNLPYMVADLY  327 (396)
Q Consensus       255 ~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva-------~~~A~~~gvp~~~~dvf  327 (396)
                            +++ =-.+|+..|||.+.  ....++.+-+.|+..|.++|.+-+......       ...-....+++..+.+|
T Consensus       128 ------fD~-i~si~~~eh~~~~~--~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiF  198 (285)
T d1kpga_         128 ------VDR-IVSIGAFEHFGHER--YDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIF  198 (285)
T ss_dssp             ------CSE-EEEESCGGGTCTTT--HHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTS
T ss_pred             ------CCC-EEEEHHHHHCCCHH--HHHHHHHHHHHCCCCCCEEEEEEECCCCHHHCCCCCCCCHHHHCHHHHHHHHHC
T ss_conf             ------441-11304346507146--789999998524899719999996368423202567764122020268887732


Q ss_pred             ECCC-CCHHHHHHHHHHHHHHHHHCCEEEEEEEC-CHHHHHHHHHHHHHHHHC
Q ss_conf             6289-99999999999999999871948999808-878899999997568876
Q gi|254780558|r  328 LDDQ-VDRDKIREKLKGLEEIARTTGQAIGVAVA-FDESIEVISQWLQQEHVR  378 (396)
Q Consensus       328 LD~~-~~~~~I~~qL~~l~~~Ar~~G~AI~igh~-~p~Ti~~L~~w~~~l~~~  378 (396)
                      -... ++.       ......+.+.|.-|---+- .......|..|...++++
T Consensus       199 pgg~lPsl-------~~~~~~~e~agf~v~~~~~~~~hYarTl~~W~~~f~~~  244 (285)
T d1kpga_         199 PGGRLPSI-------PMVQECASANGFTVTRVQSLQPHYAKTLDLWSAALQAN  244 (285)
T ss_dssp             TTCCCCCH-------HHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCH-------HHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             58888870-------36778898732000021142466999999999999999


No 31 
>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.45  E-value=4.7  Score=17.17  Aligned_cols=12  Identities=25%  Similarity=0.722  Sum_probs=10.1

Q ss_pred             HHCCCCEEEECC
Q ss_conf             850692899749
Q gi|254780558|r  292 FAKRGLLFFDDG  303 (396)
Q Consensus       292 l~~rgL~flDs~  303 (396)
                      ||+||.||+++.
T Consensus         9 LKqrG~Ffve~~   20 (31)
T d1x62a1           9 LKQKGHFFVEDQ   20 (31)
T ss_dssp             HHHHCCEESSSC
T ss_pred             HHHCCEEEECCE
T ss_conf             313443785447


No 32 
>d1u1ia1 c.2.1.3 (A:1-227,A:333-392) Myo-inositol 1-phosphate synthase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=29.01  E-value=14  Score=14.15  Aligned_cols=88  Identities=18%  Similarity=0.211  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCC---CHHHHHHHHHCCCEEEEEEEECCCCC--HHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf             9999999998506928997497632---26789898709946984588628999--999999999999999871948999
Q gi|254780558|r  283 ESAEVIFKEFAKRGLLFFDDGSSPR---NLTRVLAPKLNLPYMVADLYLDDQVD--RDKIREKLKGLEEIARTTGQAIGV  357 (396)
Q Consensus       283 ~~m~~vl~~l~~rgL~flDs~Ts~~---Sva~~~A~~~gvp~~~~dvfLD~~~~--~~~I~~qL~~l~~~Ar~~G~AI~i  357 (396)
                      +.|=.....|+ .|--|+.--=+..   ---.++|++.|+|.+-     |+-.+  -..|.+.+......||+.|..-..
T Consensus       181 aS~lYA~AAl~-aG~~fVN~tPs~~a~~Pal~ela~~~gvPiaG-----dD~Kt~~g~tl~~~~l~~~~~~~~~~~~g~~  254 (287)
T d1u1ia1         181 ASMLYAYAALK-LGLPYANFTPSPGSAIPALKELAEKKGVPHAG-----NDGKAIVAAPLILDIARFLLFAKKKGVKGVV  254 (287)
T ss_dssp             HHHHHHHHHHH-TTCCEEECSSSCTTCSHHHHHHHHTTTCEEEE-----SSBCHHHHHHHHHHHHHHHHHHHTTTCCEEC
T ss_pred             HHHHHHHHHHH-CCCCEEECCCCCCCCCHHHHHHHHHCCCCEEC-----CCHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             67999999998-59977705674256888999999986997755-----4033124506799999999999864887661


Q ss_pred             E--------------ECCHHHHHHHHHHHHHHH
Q ss_conf             8--------------088788999999975688
Q gi|254780558|r  358 A--------------VAFDESIEVISQWLQQEH  376 (396)
Q Consensus       358 g--------------h~~p~Ti~~L~~w~~~l~  376 (396)
                      +              |-+.+.+..|..|...|+
T Consensus       255 ~~~~~~~k~~~~~~~~~~~~q~~~l~~~~~~~~  287 (287)
T d1u1ia1         255 KEMAFFFKSPMDTNVINTHEQFVVLKEWYSNLK  287 (287)
T ss_dssp             TTCGGGBSSCTTCCCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             466677427446774248999999999987349


No 33 
>d2fdsa1 c.1.2.3 (A:1-324) Protozoan orotidine monophosphate decarboxylase {Plasmodium berghei [TaxId: 5821]}
Probab=28.18  E-value=14  Score=14.06  Aligned_cols=132  Identities=10%  Similarity=0.090  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf             8999999998599299981766568987787855446789989999999999985-589359800123000049899999
Q gi|254780558|r  209 LDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRR-GTGYFGVMNYRGAMLLSNKESAEV  287 (396)
Q Consensus       209 ~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~~~~l~~~l~~-~p~~vGvnNhmGs~~t~~~~~m~~  287 (396)
                      +.+..+.++..|+.|++-+       +..          .=+.........+++. -..++-|+-+||...      |++
T Consensus       121 L~~~i~~l~~~g~~VflDl-------K~~----------DIpnTv~~ya~a~~~~l~aD~lTVh~~~G~d~------l~~  177 (324)
T d2fdsa1         121 LKNVFDYLNSMNIPTMLDM-------KIN----------DIGNTVKNYRKFIFEYLKSDSCTINVYMGTSM------LKD  177 (324)
T ss_dssp             HHHHHHHHHHTTCCEEEEE-------EEC----------CCHHHHHHHHHHHHTTSCCSEEEECCTTCSTT------HHH
T ss_pred             HHHHHHHHHCCCCCEEEEH-------HHC----------CHHHHHHHHHHHHHCCCCCCEEEECCCCCHHH------HHH
T ss_conf             9999998640587289740-------120----------63769999999764058976798615674899------999


Q ss_pred             HHHHHH---CCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH----HCCEEEEEEEC
Q ss_conf             999985---06928997497632267898987099469845886289999999999999999998----71948999808
Q gi|254780558|r  288 IFKEFA---KRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIAR----TTGQAIGVAVA  360 (396)
Q Consensus       288 vl~~l~---~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dvfLD~~~~~~~I~~qL~~l~~~Ar----~~G~AI~igh~  360 (396)
                      ++....   .+|++.|-.-+++.|.-.+  ..         ...|+..-...+...+.++.....    ..+.-+.+|..
T Consensus       178 ~~~~~~~~~~kgv~vL~~tSn~~s~~~q--~~---------~~~~~~~~~~~v~~~~~~~a~~~~~~~~~~~~G~Vvgat  246 (324)
T d2fdsa1         178 ICFDYEKNKYYSAYVLIKTTNKDSFIFQ--NE---------LSINDKQAYIVMAEETQKMATDLKIDQNNEFIGFVVGSN  246 (324)
T ss_dssp             HSEETTTTEECEEEEEEECSSGGGHHHH--TT---------CEETTEEHHHHHHHHHHHHHHHHTTGGGTCCEEEEECTT
T ss_pred             HHHHHHHCCCCCCEEEEECCCHHHHHHH--HH---------HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCC
T ss_conf             9998874257653022003751777765--43---------124776320157899999999977641357766363354


Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             87889999999756
Q gi|254780558|r  361 FDESIEVISQWLQQ  374 (396)
Q Consensus       361 ~p~Ti~~L~~w~~~  374 (396)
                      +|+.+..+.+..++
T Consensus       247 ~p~el~~iR~~~~~  260 (324)
T d2fdsa1         247 AFEEMKIIRNKFPD  260 (324)
T ss_dssp             CHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             06787888876899


No 34 
>d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]}
Probab=26.70  E-value=15  Score=13.90  Aligned_cols=100  Identities=11%  Similarity=0.027  Sum_probs=60.5

Q ss_pred             HHHHHHHHHCCCCCEEEEECCCC-------------CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             68899998379350898708987-------------68999999998599299981766568987787855446789989
Q gi|254780558|r  185 TGTQRAINLLPANITLAFASNGN-------------SLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQ  251 (396)
Q Consensus       185 ~~~~~ai~~LP~~vT~A~~P~~~-------------~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~  251 (396)
                      ....+.+.+....++ ++.++..             ..+++.+.|+.-|-..+..-+..                ....+
T Consensus        50 ~~~~~~l~~~gl~i~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~~~----------------~~~~~  112 (275)
T d2g0wa1          50 EDMLRILDEHNMKVT-EVEYITQWGTAEDRTAEQQKKEQTTFHMARLFGVKHINCGLLE----------------KIPEE  112 (275)
T ss_dssp             HHHHHHHHHTTCEEE-EEECBCCCSSTTTCCHHHHHHHHHHHHHHHHHTCCEEEECCCS----------------CCCHH
T ss_pred             HHHHHHHHHCCCCEE-EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC----------------CHHHH
T ss_conf             999999997499369-9850346677806678999999999999998199547318998----------------14789


Q ss_pred             HHHHHHHHHHHHCCCC-EEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             9999999999855893-59800123000049899999999985069289974
Q gi|254780558|r  252 QLLNRLRYSLRRGTGY-FGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDD  302 (396)
Q Consensus       252 ~~~~~l~~~l~~~p~~-vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs  302 (396)
                      ...++|.+.....-.+ +.+-+|..+-+ .+..-+..+++.+...++++.-+
T Consensus       113 ~~~~~l~~l~~~a~~~gi~le~~~~~~~-~t~~~~~~l~~~v~~~~~g~~~D  163 (275)
T d2g0wa1         113 QIIVALGELCDRAEELIIGLEFMPYSGV-ADLQAAWRVAEACGRDNAQLICD  163 (275)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEECCTTSSS-CSHHHHHHHHHHHTCTTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHCCEEEEEECCCCC-CCHHHHHHHHHHHCCCCCCCCCC
T ss_conf             9999999999998746726743025788-99999999998742544312445


No 35 
>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]}
Probab=25.89  E-value=16  Score=13.81  Aligned_cols=114  Identities=13%  Similarity=0.277  Sum_probs=75.4

Q ss_pred             HHHHHHCCCCEEEEEC--------CCCCCCCCHHHHHHHHHHHHCCCC---EEEECCCCCCCHHHHHHHHHCCCEEEEEE
Q ss_conf             9999855893598001--------230000498999999999850692---89974976322678989870994698458
Q gi|254780558|r  258 RYSLRRGTGYFGVMNY--------RGAMLLSNKESAEVIFKEFAKRGL---LFFDDGSSPRNLTRVLAPKLNLPYMVADL  326 (396)
Q Consensus       258 ~~~l~~~p~~vGvnNh--------mGs~~t~~~~~m~~vl~~l~~rgL---~flDs~Ts~~Sva~~~A~~~gvp~~~~dv  326 (396)
                      .-++.--|..+-+.--        -|=-+..+..-++.+++.|++.|.   +|+|.    .-..-+.|++.|....+-+-
T Consensus        80 ~ia~~~kP~qvtLVPe~r~elTTegGld~~~~~~~L~~~i~~l~~~girvSLFiDp----d~~~i~~a~~lGad~IElhT  155 (242)
T d1m5wa_          80 AIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDA----DEEQIKAAAEVGAPFIEIHT  155 (242)
T ss_dssp             HHHHHHCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECS----CHHHHHHHHHTTCSEEEEEC
T ss_pred             HHHHHHCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEECC----CHHHHHHHHHCCCCEEEEEC
T ss_conf             99987163227886257555576775520215889999999998669707999445----24657788642766355320


Q ss_pred             --EECC--CCCHHHHHHHHHHHHHHHHHCCEEEEEEECCH-HHHHHHHHHHHHHH
Q ss_conf             --8628--99999999999999999987194899980887-88999999975688
Q gi|254780558|r  327 --YLDD--QVDRDKIREKLKGLEEIARTTGQAIGVAVAFD-ESIEVISQWLQQEH  376 (396)
Q Consensus       327 --fLD~--~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p-~Ti~~L~~w~~~l~  376 (396)
                        |-+.  .........++.++...|++.|--|--||-.. +++..|.+ ++.++
T Consensus       156 G~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgLn~~Nl~~i~~-ip~i~  209 (242)
T d1m5wa_         156 GCYADAKTDAEQAQELARIAKAATFAASLGLKVNAGHGLTYHNVKAIAA-IPEMH  209 (242)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEESSCCTTTHHHHHT-CTTEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHC-CCCCE
T ss_conf             2110235410257789999999999986688555898867200599844-89976


No 36 
>d1uv7a_ d.67.4.1 (A:) General secretion pathway protein M, EpsM {Vibrio cholerae [TaxId: 666]}
Probab=24.51  E-value=15  Score=13.90  Aligned_cols=41  Identities=12%  Similarity=0.122  Sum_probs=26.9

Q ss_pred             HHHHHCCEEEEEEEC---------CHHHHHHHHHHHHHHH-HCCCEEEEHH
Q ss_conf             999871948999808---------8788999999975688-7691899677
Q gi|254780558|r  346 EIARTTGQAIGVAVA---------FDESIEVISQWLQQEH-VRDVSVVPLS  386 (396)
Q Consensus       346 ~~Ar~~G~AI~igh~---------~p~Ti~~L~~w~~~l~-~~gi~lVpvS  386 (396)
                      +-|+++|..|-=--|         -++.++.|..|+..|+ ..||.+.-++
T Consensus         9 ~Sa~~~gl~i~R~QP~gd~vqV~ld~v~F~~ll~WL~~L~~~~Gi~v~~l~   59 (80)
T d1uv7a_           9 NSTRQFNIELIRVQPRGEMMQVWIQPLPFSQLVSWIAYLQERQGVSVDAID   59 (80)
T ss_dssp             HHHHHHTCCEEEEEECSSEEEEEECCBCHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred             HHHHHCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             999877983898557998799998687989999999999761785799988


No 37 
>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=24.35  E-value=17  Score=13.63  Aligned_cols=170  Identities=9%  Similarity=0.132  Sum_probs=97.9

Q ss_pred             EEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             99973778771688999983793508987089876899999999859929998176656898778785544678998999
Q gi|254780558|r  174 AIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQQL  253 (396)
Q Consensus       174 AIVIddlG~~~~~~~~ai~~LP~~vT~A~~P~~~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~~pGp~~L~~~~~~~~~  253 (396)
                      -|.=-|+|.+.. ...+..+.+..|| .+..........-++++..|.+..++.=..  +++.. .|+            
T Consensus        64 ~VLDiGCG~G~~-~~~~a~~~g~~v~-git~s~~q~~~a~~~~~~~~l~~~v~~~~~--d~~~~-~~~------------  126 (291)
T d1kpia_          64 TLLDIGCGWGST-MRHAVAEYDVNVI-GLTLSENQYAHDKAMFDEVDSPRRKEVRIQ--GWEEF-DEP------------  126 (291)
T ss_dssp             EEEEETCTTSHH-HHHHHHHHCCEEE-EEESCHHHHHHHHHHHHHSCCSSCEEEEEC--CGGGC-CCC------------
T ss_pred             EEEEECCCCHHH-HHHHHHHCCCCEE-ECCCHHHHHHHHHHHHHHHCCCHHHHHHHH--CCCCC-CCC------------
T ss_conf             788745762589-9999986475303-105208899999999875111113445542--01133-665------------


Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCC-----CHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHC----------
Q ss_conf             999999998558935980012300004-----98999999999850692899749763226789898709----------
Q gi|254780558|r  254 LNRLRYSLRRGTGYFGVMNYRGAMLLS-----NKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLN----------  318 (396)
Q Consensus       254 ~~~l~~~l~~~p~~vGvnNhmGs~~t~-----~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~g----------  318 (396)
                             +++ --.+|+..|||.+.-.     -+..++.+-+.|+.-|.+|+..-+.++..-   ..+.+          
T Consensus       127 -------fD~-i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~---~~~~~~~~p~~~~~~  195 (291)
T d1kpia_         127 -------VDR-IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEE---AQELGLTSPMSLLRF  195 (291)
T ss_dssp             -------CSE-EEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHH---HHHHTCCCCHHHHHH
T ss_pred             -------CCE-EEECHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCH---HHHCCCCCCHHHCCC
T ss_conf             -------145-762016776012555567899999999999747998755789996057510---122267774000010


Q ss_pred             CCEEEEEEEECCC-CCHHHHHHHHHHHHHHHHHCCEEEE-EEECCHHHHHHHHHHHHHHHHC
Q ss_conf             9469845886289-9999999999999999987194899-9808878899999997568876
Q gi|254780558|r  319 LPYMVADLYLDDQ-VDRDKIREKLKGLEEIARTTGQAIG-VAVAFDESIEVISQWLQQEHVR  378 (396)
Q Consensus       319 vp~~~~dvfLD~~-~~~~~I~~qL~~l~~~Ar~~G~AI~-igh~~p~Ti~~L~~w~~~l~~~  378 (396)
                      .++..+.+|=... ++..       ++...+.+.|.-|- +-.-.......|..|...++++
T Consensus       196 ~~fi~kyiFpgg~lps~~-------~~~~~~e~~gl~v~~~~~~~~hYa~TL~~W~~~f~~~  250 (291)
T d1kpia_         196 IKFILTEIFPGGRLPRIS-------QVDYYSSNAGWKVERYHRIGANYVPTLNAWADALQAH  250 (291)
T ss_dssp             HHHHHHHTCTTCCCCCHH-------HHHHHHHHHTCEEEEEEECGGGHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHCCCCCCCCHH-------HHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             168988730788888778-------8875301200122023545560999999999999997


No 38 
>d1o98a1 c.105.1.1 (A:77-310) 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=21.99  E-value=19  Score=13.33  Aligned_cols=50  Identities=22%  Similarity=0.219  Sum_probs=29.7

Q ss_pred             HHHHHHHCCCEEEEEEEECCC-CCHHHHHHHHHHHHHHHHHCCE-EEE--EEEC
Q ss_conf             898987099469845886289-9999999999999999987194-899--9808
Q gi|254780558|r  311 RVLAPKLNLPYMVADLYLDDQ-VDRDKIREKLKGLEEIARTTGQ-AIG--VAVA  360 (396)
Q Consensus       311 ~~~A~~~gvp~~~~dvfLD~~-~~~~~I~~qL~~l~~~Ar~~G~-AI~--igh~  360 (396)
                      -++|.+.|++-...+.|+|.. ..+..-...|.+++..-.+.|. -|+  +|+-
T Consensus        57 ~~~a~~~gv~~V~iH~~~DGRDt~p~s~~~~l~~l~~~~~~~~~~~IASv~GRy  110 (234)
T d1o98a1          57 LRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEYGVGEIATLSGRY  110 (234)
T ss_dssp             HHHHHHTTCCCEEEEEEECSSSSCTTCHHHHHHHHHHHHHHHTCCEEEEEEEHH
T ss_pred             HHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             999997088741789973377888246899999999975314643687760643


No 39 
>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=21.81  E-value=19  Score=13.31  Aligned_cols=18  Identities=11%  Similarity=0.143  Sum_probs=9.1

Q ss_pred             HHHHCCCEEEEEEEECCC
Q ss_conf             987099469845886289
Q gi|254780558|r  314 APKLNLPYMVADLYLDDQ  331 (396)
Q Consensus       314 A~~~gvp~~~~dvfLD~~  331 (396)
                      -.+.|.-.-..-.|+|.+
T Consensus       178 l~~~gavGdi~g~f~d~~  195 (262)
T d2gnpa1         178 LTKVKTVGEICCRFFDSK  195 (262)
T ss_dssp             HHHTTCCEEETTEEECTT
T ss_pred             HHHCCCHHHHHHHHCCCC
T ss_conf             997681889997661678


No 40 
>d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId: 5691]}
Probab=20.96  E-value=20  Score=13.20  Aligned_cols=110  Identities=10%  Similarity=-0.021  Sum_probs=74.0

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEEE
Q ss_conf             89989999999999985589359800123000049899999999985069289974976322678989870994698458
Q gi|254780558|r  247 TQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADL  326 (396)
Q Consensus       247 ~~~~~~~~~~l~~~l~~~p~~vGvnNhmGs~~t~~~~~m~~vl~~l~~rgL~flDs~Ts~~Sva~~~A~~~gvp~~~~dv  326 (396)
                      .++.+|..+.+..+..+.| .+-+-.-+.-   .|-..+..+.+.+.++=...=|+.+..+..  .+.+..... +.+-+
T Consensus       130 ~ls~~elid~y~~l~~~YP-IisIEDp~~e---~D~~gw~~lt~~~g~k~~iVGDDL~vTn~~--rl~~gi~~~-a~Nai  202 (291)
T d2ptza1         130 WVTAEQLRETYCKWAHDYP-IVSIEDPYDQ---DDFAGFAGITEALKGKTQIVGDDLTVTNTE--RIKMAIEKK-ACNSL  202 (291)
T ss_dssp             EECHHHHHHHHHHHHHHSC-EEEEECCSCT---TCHHHHHHHHHHTTTTSEEEESTTTTTCHH--HHHHHHHTT-CCSEE
T ss_pred             HHHHHHHHHHHHHHHHCCC-EEEECCCCCC---CCHHHHHHHHHCCCCEEEEECCCCCCCCHH--HHHHCCCCC-CCCCE
T ss_conf             1048999999998850243-4685077663---024679986411686599844755346567--775331368-76513


Q ss_pred             EECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHH
Q ss_conf             862899999999999999999987194899980887889
Q gi|254780558|r  327 YLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVAFDESI  365 (396)
Q Consensus       327 fLD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh~~p~Ti  365 (396)
                      .|-- ..... ....-++.++|+++|+.+.|.|-.-+|-
T Consensus       203 LIK~-NQiGT-vtEt~ea~~la~~~g~~~iiShRSGETe  239 (291)
T d2ptza1         203 LLKI-NQIGT-ISEAIASSKLCMENGWSVMVSHRSGETE  239 (291)
T ss_dssp             EECH-HHHCC-HHHHHHHHHHHHHTTCEEEEECCSBCCS
T ss_pred             EECC-HHHHH-HHHHHHHHHHHHHCCEEEEEECCCCCCC
T ss_conf             7500-12456-8899999999997692699428998867


No 41 
>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]}
Probab=20.85  E-value=20  Score=13.19  Aligned_cols=145  Identities=14%  Similarity=0.028  Sum_probs=66.9

Q ss_pred             CCHHHHHHHHHHCCCCEEEECCCCCCCCCCC--CCCCCCCCCCC--CHHH----HHHHHHHHHH------HCCCCEEEEE
Q ss_conf             7689999999985992999817665689877--87855446789--9899----9999999998------5589359800
Q gi|254780558|r  207 NSLDRWMKEAKKKGQEAILQIPMQAFDESYN--EDDSYTLKVTQ--TVQQ----LLNRLRYSLR------RGTGYFGVMN  272 (396)
Q Consensus       207 ~~~~~~~~~Ar~~G~EvllhlPMEp~~~~~~--~pGp~~L~~~~--~~~~----~~~~l~~~l~------~~p~~vGvnN  272 (396)
                      ....+.++.|+++|..|||-+     .|.+.  +|+.+.+...-  +.++    +.......+.      ..+.+++|||
T Consensus        60 ~~~~~~v~~a~~~gl~vil~~-----h~~~~wa~~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~~k~~~~~~~~~~i~n  134 (332)
T d1hjsa_          60 DYNIAIAKRAKAAGLGVYIDF-----HYSDTWADPAHQTMPAGWPSDIDNLSWKLYNYTLDAANKLQNAGIQPTIVSIGN  134 (332)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEE-----CCSSSCCBTTBCBCCTTCCCSHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEESS
T ss_pred             HHHHHHHHHHHHCCCEEEEEE-----CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC
T ss_conf             999999999998899799983-----678654576656787544321567999999999999999985387314766326


Q ss_pred             CCCCCC------CCCHHHHHH----HHHHHHC----CCCEEEECCCCCCC---HHHH--HHHHHCC----C--EEEEEEE
Q ss_conf             123000------049899999----9999850----69289974976322---6789--8987099----4--6984588
Q gi|254780558|r  273 YRGAML------LSNKESAEV----IFKEFAK----RGLLFFDDGSSPRN---LTRV--LAPKLNL----P--YMVADLY  327 (396)
Q Consensus       273 hmGs~~------t~~~~~m~~----vl~~l~~----rgL~flDs~Ts~~S---va~~--~A~~~gv----p--~~~~dvf  327 (396)
                      ......      +.+...+..    ..+.++.    .+.-.+-..+++..   ...-  .-...+.    +  +..-+.+
T Consensus       135 E~n~g~~w~~~~~~~~~~~~~l~~~a~~av~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ig~~~Y  214 (332)
T d1hjsa_         135 EIRAGLLWPTGRTENWANIARLLHSAAWGIKDSSLSPKPKIMIHLDNGWDWGTQNWWYTNVLKQGTLELSDFDMMGVSFY  214 (332)
T ss_dssp             SGGGEETBTTEETTCHHHHHHHHHHHHHHHHTSCCSSCCEEEEEESCTTCHHHHHHHHHHHHTTSSSCGGGCCEEEEECC
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC
T ss_conf             36776567667741277899999999999985024788504432357675056666789998617555776235744316


Q ss_pred             --ECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEE
Q ss_conf             --62899999999999999999987194899980
Q gi|254780558|r  328 --LDDQVDRDKIREKLKGLEEIARTTGQAIGVAV  359 (396)
Q Consensus       328 --LD~~~~~~~I~~qL~~l~~~Ar~~G~AI~igh  359 (396)
                        -+...+...+...+.   .++.+.|..|.|..
T Consensus       215 ~~~~~~~~~~~~~~~~~---~~~~~~g~~v~i~E  245 (332)
T d1hjsa_         215 PFYSSSATLSALKSSLD---NMAKTWNKEIAVVE  245 (332)
T ss_dssp             SSSCTTCCHHHHHHHHH---HHHHHHCCEEEEEE
T ss_pred             CCCCCCCCHHHHHHHHH---HHHHHHCCCEEEEE
T ss_conf             87887777778999999---99998388559998


Done!