RPSBLAST alignment of GI: 254780558 and protein with PDBid: 2nly
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical protein; PFAM04748, structural genomics, PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7 Length = 245
Score = 114 bits (286), Expect = 4e-26
Identities = 46/231 (19%), Positives = 97/231 (41%), Gaps = 7/231 (3%)
Query: 168 ASGARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQI 227
R AI++ G G + +T+A + + A+ G E I+ +
Sbjct: 1 GEMKRAAIIIDDFGGDVKGVDDFLTG-EIPVTVAVMPFLEHSTKQAEIAQAAGLEVIVHM 59
Query: 228 PMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEV 287
P++ + + +V ++ +R+R + G+ N+ G+ ++ N++
Sbjct: 60 PLEPKKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPYAVGLNNHMGSKIVENEKIMRA 119
Query: 288 IFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYL-DDQVDRDKIREKLKGLEE 346
I + ++ D G+SP +L LA +L +PY ++L + R ++ + ++ L +
Sbjct: 120 ILEVVKEKNAFIIDSGTSPHSLIPQLAEELEVPYATRSIFLDNTHSSRKEVIKNMRKLAK 179
Query: 347 IARTTGQAIGVAVAFD---ESIEVISQWLQQEHVRDVSVVPLSCLAKLSSP 394
A+ + IG+ E+ I L + + +VP+S L L SP
Sbjct: 180 KAKQGSEPIGIGHVGVRGDETYAGIRSMLDEFQAESIQLVPVSQL--LPSP 228