RPSBLAST alignment of GI: 254780558 and protein with PDBid: 2nly

>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical protein; PFAM04748, structural genomics, PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7 Length = 245
 Score =  114 bits (286), Expect = 4e-26
 Identities = 46/231 (19%), Positives = 97/231 (41%), Gaps = 7/231 (3%)

Query: 168 ASGARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQI 227
               R AI++   G    G    +      +T+A         +  + A+  G E I+ +
Sbjct: 1   GEMKRAAIIIDDFGGDVKGVDDFLTG-EIPVTVAVMPFLEHSTKQAEIAQAAGLEVIVHM 59

Query: 228 PMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEV 287
           P++      +      +    +V ++ +R+R +        G+ N+ G+ ++ N++    
Sbjct: 60  PLEPKKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPYAVGLNNHMGSKIVENEKIMRA 119

Query: 288 IFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYL-DDQVDRDKIREKLKGLEE 346
           I +   ++     D G+SP +L   LA +L +PY    ++L +    R ++ + ++ L +
Sbjct: 120 ILEVVKEKNAFIIDSGTSPHSLIPQLAEELEVPYATRSIFLDNTHSSRKEVIKNMRKLAK 179

Query: 347 IARTTGQAIGVAVAFD---ESIEVISQWLQQEHVRDVSVVPLSCLAKLSSP 394
            A+   + IG+        E+   I   L +     + +VP+S L  L SP
Sbjct: 180 KAKQGSEPIGIGHVGVRGDETYAGIRSMLDEFQAESIQLVPVSQL--LPSP 228