RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780558|ref|YP_003064971.1| hypothetical protein
CLIBASIA_02225 [Candidatus Liberibacter asiaticus str. psy62]
(396 letters)
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics,
unknown function, PSI-2, protein structure initiative;
1.90A {Agrobacterium tumefaciens str}
Length = 261
Score = 198 bits (506), Expect = 1e-51
Identities = 101/225 (44%), Positives = 141/225 (62%)
Query: 166 SNASGARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAIL 225
S A G R+AIVV GLG+SQTG+Q+AI LP +TL FA++GNSL RWM++A+++G E +L
Sbjct: 25 SGARGTRVAIVVGGLGLSQTGSQKAIRDLPPEVTLGFAASGNSLQRWMQDARREGHEILL 84
Query: 226 QIPMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESA 285
QIP++ F TL + ++RL S+ + T Y GVMNY G L+ + +
Sbjct: 85 QIPLEPFGYPGTNPGPDTLLAGDPAKVNIDRLHRSMAKITNYTGVMNYLGGRFLAEQSAL 144
Query: 286 EVIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLE 345
E + ++ KRGLLF DDGSS ++L+ +A ++ P AD+ LD +V I KL LE
Sbjct: 145 EPVMRDIGKRGLLFLDDGSSAQSLSGGIAKAISAPQGFADVLLDGEVTEASILRKLDDLE 204
Query: 346 EIARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVSVVPLSCLAK 390
IAR GQAIGVA AFDESI IS+W ++ R + +V +S L
Sbjct: 205 RIARRNGQAIGVASAFDESIAAISKWSREAGGRGIEIVGVSALVS 249
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical
protein; PFAM04748, structural genomics, PSI, protein
structure initiative; 2.50A {Bacillus halodurans} SCOP:
c.6.2.7
Length = 245
Score = 114 bits (286), Expect = 4e-26
Identities = 46/231 (19%), Positives = 97/231 (41%), Gaps = 7/231 (3%)
Query: 168 ASGARIAIVVSGLGISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQI 227
R AI++ G G + +T+A + + A+ G E I+ +
Sbjct: 1 GEMKRAAIIIDDFGGDVKGVDDFLTG-EIPVTVAVMPFLEHSTKQAEIAQAAGLEVIVHM 59
Query: 228 PMQAFDESYNEDDSYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEV 287
P++ + + +V ++ +R+R + G+ N+ G+ ++ N++
Sbjct: 60 PLEPKKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPYAVGLNNHMGSKIVENEKIMRA 119
Query: 288 IFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADLYL-DDQVDRDKIREKLKGLEE 346
I + ++ D G+SP +L LA +L +PY ++L + R ++ + ++ L +
Sbjct: 120 ILEVVKEKNAFIIDSGTSPHSLIPQLAEELEVPYATRSIFLDNTHSSRKEVIKNMRKLAK 179
Query: 347 IARTTGQAIGVAVAFD---ESIEVISQWLQQEHVRDVSVVPLSCLAKLSSP 394
A+ + IG+ E+ I L + + +VP+S L L SP
Sbjct: 180 KAKQGSEPIGIGHVGVRGDETYAGIRSMLDEFQAESIQLVPVSQL--LPSP 228
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 47.6 bits (113), Expect = 5e-06
Identities = 58/371 (15%), Positives = 105/371 (28%), Gaps = 142/371 (38%)
Query: 91 VCNQLKNDSSQHDGQIQNDISGKTVVNKPTRSTSIDSLPTIEERLILGLSKKELLAK--- 147
+ +QL+ ++ + +PT + D PT + EL+ K
Sbjct: 29 IASQLQEQFNKI-------------LPEPTEGFAADDEPT---------TPAELVGKFLG 66
Query: 148 ---NKVGREDTEVPAMD-------KNF-CSNASGARI-AIVVSGLGISQTGTQRAINLLP 195
+ V E ++V D F G I A+ L + T + L+
Sbjct: 67 YVSSLV--EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 196 ANITLAFASNGNSLDRW---MKEAKKKGQEAILQIPMQAF-----DESYNED-----DSY 242
IT + + + A +G ++ I F + Y E+ +Y
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI----FGGQGNTDDYFEELRDLYQTY 180
Query: 243 TLKVT---QTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLF 299
+ V + + L+ L + AE +F +GL
Sbjct: 181 HVLVGDLIKFSAETLSEL---------------------IRTTLDAEKVFT----QGL-- 213
Query: 300 FD-----DGSSPRNLTRVL--APKLNLP---------YMVADLYLDDQVDRDKIREKLKG 343
+ + S L P ++ P Y+V L ++R LKG
Sbjct: 214 -NILEWLENPSNTPDKDYLLSIP-ISCPLIGVIQLAHYVVTAKLLG--FTPGELRSYLKG 269
Query: 344 LEEIARTTGQAIGVAVA-----------FDE-SIEVISQ--WL----QQEHVRDVSVVPL 385
TG + G+ A F + I+ ++ +
Sbjct: 270 ------ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE----------- 312
Query: 386 SCLAKLSSPSS 396
S P S
Sbjct: 313 -AYPNTSLPPS 322
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.014
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
Query: 214 KEAKKKGQEAILQIPMQAFDESYNEDDSYTLKVTQTVQ 251
K+A KK Q A L++ Y +D + L + T++
Sbjct: 19 KQALKKLQ-ASLKL--------YADDSAPALAIKATME 47
Score = 27.7 bits (60), Expect = 4.3
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 290 KEFAKR---GLLFFDDGSSPRNLTRVLAPKLNL 319
K+ K+ L + D S+P LA K +
Sbjct: 19 KQALKKLQASLKLYADDSAP-----ALAIKATM 46
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.0 bits (74), Expect = 0.11
Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 208 SLDRWMKEAKKKGQE--AILQIPMQAFDESYNED-DSYTLKVTQTVQ--QLLNRL 257
S+ +W +E +K+ QE A ++ Q + E +D + + + ++ V+ ++ NR+
Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140
>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural
genomics, chelatase super-family fold, 4Fe-4S
iron-sulphur cluster; 1.9A {Deinococcus radiodurans}
Length = 474
Score = 28.8 bits (64), Expect = 2.2
Identities = 7/52 (13%), Positives = 16/52 (30%)
Query: 334 RDKIREKLKGLEEIARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVSVVPL 385
+RE+ + + + S +S+W + +VP
Sbjct: 161 AQALRERGQFAGVEVVLESREALTPESHAASAVPLSEWPSRVEAGQAVLVPF 212
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic
acetylcholine receptors, transmembrane domain, HFI
junction, cell membrane; NMR {Homo sapiens}
Length = 164
Score = 27.6 bits (61), Expect = 5.3
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 21 SQIISRLGLFLLFCTFIVGLSI--YILISHAFVGTISEMIPYSVIREIAPIPLTIPL 75
S + +G +L+F +V SI + + + + + P +A + + L
Sbjct: 85 SLDVPLVGKYLMFTMVLVTFSIVTSVCVLNVHHRSPTTHTPRGGGGYVAMVIDRLFL 141
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein,
copper, zinc, beta barrel, oxidoreductase; 2.80A
{Methylococcus capsulatus str}
Length = 382
Score = 27.4 bits (61), Expect = 5.6
Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 10/55 (18%)
Query: 151 GREDTEVPAMDKNFCSNASGARIAIVVSGLGIS----------QTGTQRAINLLP 195
GR D V A D+ A I IVV + + Q GT R + L
Sbjct: 190 GRADELVSATDRKVAMGFLAATILIVVMAMSSANSKYPITIPLQAGTMRGMKPLE 244
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular
trafficking, endocytosis, hydrolase, GTPase activation;
1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1
PDB: 2g77_A*
Length = 396
Score = 27.5 bits (60), Expect = 6.3
Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 4/104 (3%)
Query: 250 VQQLLNRL--RYSLRR-GTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSP 306
VQ L R+ +++R +GY +N + + + +
Sbjct: 109 VQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVD 168
Query: 307 RNLTRVLAPKLNLPYMVADLYLDDQVDRDK-IREKLKGLEEIAR 349
+T + A + + D+ + I ++K L ++ +
Sbjct: 169 EQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVK 212
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.1 bits (59), Expect = 6.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 56 EMIPYSVIREIAPIPLTIPLNIE 78
E+ PY +++IAP L L++E
Sbjct: 795 ELKPYKQVKQIAPAELEGLLDLE 817
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 27.2 bits (59), Expect = 7.1
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 266 GYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFFDDGSSPRNLTRVLA 314
G + + +N+E A +I EFAK+ S + + +
Sbjct: 291 GLYKALEAAHGPGQANQEIAAMIDTEFAKQT--------SLDAVAQAVV 331
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ,
RISC, slicer, RNAse H, hydrolase/gene regulation
complex; 2.25A {Pyrococcus furiosus dsm 3638} SCOP:
b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Length = 771
Score = 27.0 bits (59), Expect = 7.6
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 316 KLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVAFDESIEVISQWLQQE 375
K+N + +Y+ + D E K I R + +G+ + + I ++ L+ E
Sbjct: 12 KINKKIIPDKIYVYR-LFNDPEEELQKEGYSIYRLAYENVGIVIDPENLIIATTKELEYE 70
Query: 376 H 376
Sbjct: 71 G 71
>3chx_A PMOB; membrane protein, copper, methane, beta barrel; 3.90A
{Methylosinus trichosporium}
Length = 392
Score = 26.7 bits (59), Expect = 9.1
Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 10/65 (15%)
Query: 151 GREDTEVPAMDKNFCSNASGARIAIVVSGLGIS----------QTGTQRAINLLPANITL 200
G+++ ++ D+ + I + G ++ Q G Q+ + + T
Sbjct: 190 GKDEEQIGDDDRRVGAIVLAVTILATIIGYAVTNSTFPRTIPLQAGLQKPLTPIIEEGTA 249
Query: 201 AFASN 205
+
Sbjct: 250 GVGPH 254
>1fft_A Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane
protein, oxidoreductase; HET: HEM HEO; 3.50A
{Escherichia coli} SCOP: f.24.1.1
Length = 663
Score = 26.6 bits (59), Expect = 9.1
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 25 SRLGLFLLFCTFIVGLS----IYILISHAFVGTISEMIPYSVIRE 65
S G+ + + I G + I+ L F G I I S +
Sbjct: 589 SGAGIVIAAFSTIFGFAMIWHIWWLAIVGFAGMIITWIVKSFDED 633
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.317 0.134 0.373
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,222,232
Number of extensions: 149068
Number of successful extensions: 461
Number of sequences better than 10.0: 1
Number of HSP's gapped: 456
Number of HSP's successfully gapped: 20
Length of query: 396
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 302
Effective length of database: 3,414,294
Effective search space: 1031116788
Effective search space used: 1031116788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)