BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780558|ref|YP_003064971.1| hypothetical protein CLIBASIA_02225 [Candidatus Liberibacter asiaticus str. psy62] (396 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780558|ref|YP_003064971.1| hypothetical protein CLIBASIA_02225 [Candidatus Liberibacter asiaticus str. psy62] Length = 396 Score = 814 bits (2102), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/396 (100%), Positives = 396/396 (100%) Query: 1 MSIDLNHPLRKKTPKRKSFYSQIISRLGLFLLFCTFIVGLSIYILISHAFVGTISEMIPY 60 MSIDLNHPLRKKTPKRKSFYSQIISRLGLFLLFCTFIVGLSIYILISHAFVGTISEMIPY Sbjct: 1 MSIDLNHPLRKKTPKRKSFYSQIISRLGLFLLFCTFIVGLSIYILISHAFVGTISEMIPY 60 Query: 61 SVIREIAPIPLTIPLNIEDKQSPSKRDNNTVCNQLKNDSSQHDGQIQNDISGKTVVNKPT 120 SVIREIAPIPLTIPLNIEDKQSPSKRDNNTVCNQLKNDSSQHDGQIQNDISGKTVVNKPT Sbjct: 61 SVIREIAPIPLTIPLNIEDKQSPSKRDNNTVCNQLKNDSSQHDGQIQNDISGKTVVNKPT 120 Query: 121 RSTSIDSLPTIEERLILGLSKKELLAKNKVGREDTEVPAMDKNFCSNASGARIAIVVSGL 180 RSTSIDSLPTIEERLILGLSKKELLAKNKVGREDTEVPAMDKNFCSNASGARIAIVVSGL Sbjct: 121 RSTSIDSLPTIEERLILGLSKKELLAKNKVGREDTEVPAMDKNFCSNASGARIAIVVSGL 180 Query: 181 GISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDD 240 GISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDD Sbjct: 181 GISQTGTQRAINLLPANITLAFASNGNSLDRWMKEAKKKGQEAILQIPMQAFDESYNEDD 240 Query: 241 SYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFF 300 SYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFF Sbjct: 241 SYTLKVTQTVQQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKESAEVIFKEFAKRGLLFF 300 Query: 301 DDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVA 360 DDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVA Sbjct: 301 DDGSSPRNLTRVLAPKLNLPYMVADLYLDDQVDRDKIREKLKGLEEIARTTGQAIGVAVA 360 Query: 361 FDESIEVISQWLQQEHVRDVSVVPLSCLAKLSSPSS 396 FDESIEVISQWLQQEHVRDVSVVPLSCLAKLSSPSS Sbjct: 361 FDESIEVISQWLQQEHVRDVSVVPLSCLAKLSSPSS 396 >gi|254781165|ref|YP_003065578.1| pyridoxamine 5'-phosphate oxidase [Candidatus Liberibacter asiaticus str. psy62] Length = 201 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 11/40 (27%), Positives = 20/40 (50%) Query: 287 VIFKEFAKRGLLFFDDGSSPRNLTRVLAPKLNLPYMVADL 326 V+ K F + G +F+ + SP+ + PK +L + L Sbjct: 50 VLIKHFDQEGFVFYTNSQSPKGKEILENPKASLCFHWKSL 89 >gi|254781098|ref|YP_003065511.1| cell division protein FtsW peptidoglycan synthesis [Candidatus Liberibacter asiaticus str. psy62] Length = 385 Score = 24.3 bits (51), Expect = 3.7, Method: Compositional matrix adjust. Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 36 FIVGLSIYILISHAFVGTISEMIPYSVIREIA 67 FI G+S ++ AF+G +S I Y + +A Sbjct: 184 FITGISWLWIVVFAFLGLMSLFIAYQTMPHVA 215 >gi|254780898|ref|YP_003065311.1| hypothetical protein CLIBASIA_03975 [Candidatus Liberibacter asiaticus str. psy62] Length = 207 Score = 23.5 bits (49), Expect = 5.7, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%) Query: 19 FYSQIISRLGLFLLFCTFIVGLSIYILISHAFVGTISEMIPYSVIREIAP 68 FY +I+ LG+ +L C V L +Y L F ++P+ + R P Sbjct: 14 FYIKIL--LGVLVL-CA--VSLGLYFLTITTFTQNFHAVVPHEIYRSAQP 58 >gi|254780725|ref|YP_003065138.1| response regulator receiver protein [Candidatus Liberibacter asiaticus str. psy62] Length = 427 Score = 23.1 bits (48), Expect = 9.1, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 21/49 (42%) Query: 338 REKLKGLEEIARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVSVVPLS 386 RE L LE +A V V D + + + L HV + + PLS Sbjct: 90 REVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLS 138 >gi|254780425|ref|YP_003064838.1| apolipoprotein N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 518 Score = 22.7 bits (47), Expect = 9.7, Method: Compositional matrix adjust. Identities = 11/32 (34%), Positives = 21/32 (65%) Query: 114 TVVNKPTRSTSIDSLPTIEERLILGLSKKELL 145 ++V++P+ I S+ I + LI+G +KEL+ Sbjct: 295 SIVDQPSILKKIASVLKINQLLIVGSMRKELV 326 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.134 0.373 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 243,858 Number of Sequences: 1233 Number of extensions: 10062 Number of successful extensions: 39 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 8 length of query: 396 length of database: 328,796 effective HSP length: 76 effective length of query: 320 effective length of database: 235,088 effective search space: 75228160 effective search space used: 75228160 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 39 (19.6 bits)