>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708

Score = 99.8 bits (249), Expect = 5e-22 Identities = 65/234 (27%), Positives = 112/234 (47%), Gaps = 26/234 (11%) Query: 2 IKLDHLIYCY---DNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFL 58 I ++ + Y Y N+ + + I+G SG+GKSTL L+ GF G I L Sbjct: 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533 Query: 59 NGQNHTRSSPS--KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEK 116 NG + ++ ++ L QE +FS ++ +N+ LG N+ D ++ E Sbjct: 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKENVSQD-----EIWAACEI 587 Query: 117 VFLEDFFNRFP-----------SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALR 165 ++D P S +SGGQ+QR+ALAR L+ +L+LDE + D Sbjct: 588 AEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE 647 Query: 166 HEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 +I+ L + D+ T++ ++H L + Q + + IV+ G+I+ G D L++ Sbjct: 648 KKIVNNLLNLQDK---TIIFVAHRLSVAKQ-SDKIIVLDHGKIIEQGSHDELLD 697

RPSBLAST alignment for GI: 254780559 and conserved domain: TIGR01193