RPSBLAST alignment for GI: 254780559 and conserved domain: TIGR01257

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 45/190 (23%), Positives = 90/190 (47%), Gaps = 10/190 (5%)

Query: 22   VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-HTRSSPSKRPLSILFQEN 80
            V   E   +LG +GAGK+T   ++ G    T G   + G++  T  S   + +    Q +
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFD 2021

Query: 81   NLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQM----LEKVFLEDFFNRFPSQMSGGQRQ 136
             +   LT  +++ L      RL      +++++    ++ + L  + +R     SGG ++
Sbjct: 2022 AIDDLLTGREHLYL----YARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKR 2077

Query: 137  RVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQI 196
            +++ A  LI   P++LLDEP    DP  R  +   +  +  E +  +++ SH++E+   +
Sbjct: 2078 KLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGR-AVVLTSHSMEECEAL 2136

Query: 197  ATRFIVIAGG 206
             TR  ++  G
Sbjct: 2137 CTRLAIMVKG 2146