RPSBLAST alignment for GI: 254780559 and conserved domain: cd03248
>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.. Length = 226
Score = 95.0 bits (236), Expect = 2e-20
Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 23/204 (11%)
Query: 18 FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ--NHTRSSPSKRPLSI 75
F ++ E ++GPSG+GKST+++L+ F P G + L+G+ + +S+
Sbjct: 33 VSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSL 92
Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP-------- 127
+ QE LF+ ++ NIA G L VK+ +K F +
Sbjct: 93 VGQEPVLFAR-SLQDNIAYG------LQSCSFECVKEAAQKAHAHSFISELASGYDTEVG 145
Query: 128 ---SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLL 184
SQ+SGGQ+QRVA+AR LIR +L+LDE + D ++ L + T+L
Sbjct: 146 EKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALY--DWPERRTVL 203
Query: 185 MISHNLEDSMQIATRFIVIAGGQI 208
+I+H L +++ A + +V+ GG+I
Sbjct: 204 VIAHRLS-TVERADQILVLDGGRI 226