RPSBLAST alignment for GI: 254780559 and conserved domain: cd03251

>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 234
 Score =  110 bits (276), Expect = 4e-25
 Identities = 61/214 (28%), Positives = 107/214 (50%), Gaps = 23/214 (10%)

Query: 18  FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLSI 75
               +   E + ++GPSG+GKSTL++L+  F     G I ++G +    + +  +R + +
Sbjct: 21  ISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80

Query: 76  LFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP-------- 127
           + Q+  LF+  TV +NIA G  P          +V++        +F    P        
Sbjct: 81  VSQDVFLFND-TVAENIAYG-RPGA-----TREEVEEAARAANAHEFIMELPEGYDTVIG 133

Query: 128 ---SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLL 184
               ++SGGQRQR+A+AR L++  PIL+LDE  +  D      +   L+++   R  T  
Sbjct: 134 ERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNR--TTF 191

Query: 185 MISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLM 218
           +I+H L  +++ A R +V+  G+IV  G  + L+
Sbjct: 192 VIAHRLS-TIENADRIVVLEDGKIVERGTHEELL 224