RPSBLAST alignment for GI: 254780559 and conserved domain: cd03253

>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 236
 Score =  112 bits (283), Expect = 6e-26
 Identities = 72/235 (30%), Positives = 118/235 (50%), Gaps = 28/235 (11%)

Query: 2   IKLDHLIYCYDNLKMQFD---FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFL 58
           I+ +++ + YD  +       F +   +++ I+GPSG+GKST+L L+  F   + GSI +
Sbjct: 1   IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60

Query: 59  NGQ---NHTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLE 115
           +GQ     T  S  +R + ++ Q+  LF + T+  NI  G     R D     +V +  +
Sbjct: 61  DGQDIREVTLDS-LRRAIGVVPQDTVLF-NDTIGYNIRYG-----RPD-ATDEEVIEAAK 112

Query: 116 KVFLEDFFNRFPSQ-----------MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPAL 164
              + D   RFP             +SGG++QRVA+AR +++  PILLLDE  +  D   
Sbjct: 113 AAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172

Query: 165 RHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
             EI   L+ V   R  T ++I+H L   +  A + IV+  G+IV  G  + L+ 
Sbjct: 173 EREIQAALRDVSKGR--TTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLA 224