RPSBLAST alignment for GI: 254780559 and conserved domain: cd03279

>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.. Length = 213

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 45/206 (21%), Positives = 74/206 (35%), Gaps = 31/206 (15%)

Query: 18  FDF-QVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSIL 76
            DF  ++     +I GP+GAGKST+L  +    Y             +  +P +    + 
Sbjct: 20  IDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVS 79

Query: 77  FQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFL-----EDFFNRFPSQMS 131
           F                LG     R++  +     Q    V L     + F  R  S +S
Sbjct: 80  FT-------------FQLGGK-KYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLS 125

Query: 132 GGQRQRVALARCLIRQKPI----------LLLDEPFAVFDPALRHEILGLLKQVCDERQL 181
           GG+    +L+  L   + +          L +DE F   DP     +   L+ +  E ++
Sbjct: 126 GGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRM 185

Query: 182 TLLMISHNLEDSMQIATRFIVIAGGQ 207
            + +ISH  E   +I  R  VI    
Sbjct: 186 -VGVISHVEELKERIPQRLEVIKTPG 210