RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780559|ref|YP_003064972.1| thiamine transporter
ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62]
(234 letters)
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 418 bits (1078), Expect = e-118
Identities = 135/232 (58%), Positives = 176/232 (75%)
Query: 1 MIKLDHLIYCYDNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNG 60
M+KL + + Y +L M+FD V + ER+ ILGPSGAGKSTLL+L+AGF P GS+ LNG
Sbjct: 1 MLKLTDITWLYHHLPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNG 60
Query: 61 QNHTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLE 120
Q+HT + PS+RP+S+LFQENNLFSHLTV QNI LG+ P L+L+ Q ++ + ++ +E
Sbjct: 61 QDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE 120
Query: 121 DFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQ 180
D R P Q+SGGQRQRVALARCL+R++PILLLDEPF+ DPALR E+L L+ QVC ERQ
Sbjct: 121 DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQ 180
Query: 181 LTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGLIPESTLLGIPS 232
LTLLM+SH+LED+ +IA R +V+A G+I +DG D L++G S LLGI S
Sbjct: 181 LTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKASASALLGIKS 232
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found.
Length = 213
Score = 275 bits (704), Expect = 7e-75
Identities = 115/212 (54%), Positives = 155/212 (73%)
Query: 2 IKLDHLIYCYDNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ 61
+ LD + Y Y++L M+FD V E + I+GPSGAGKSTLL+L+AGF P GSI +N Q
Sbjct: 1 LALDKVRYEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQ 60
Query: 62 NHTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLED 121
+HT +P +RP+S+LFQENNLF+HLTV QNI LG+ P L+L+ Q +V ++V + D
Sbjct: 61 SHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIAD 120
Query: 122 FFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQL 181
+ +R P Q+SGGQRQRVALARCL+R PILLLDEPF+ DP LR E+L L+KQ+C ERQ
Sbjct: 121 YLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQR 180
Query: 182 TLLMISHNLEDSMQIATRFIVIAGGQIVYDGD 213
TLLM++H+L D+ IA++ V++ G+I D
Sbjct: 181 TLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
Length = 237
Score = 178 bits (452), Expect = 2e-45
Identities = 84/199 (42%), Positives = 125/199 (62%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQ 78
+ +V + +LGPSG+GKSTLL ++AG + P G I LNGQ+ TR R + +FQ
Sbjct: 20 NLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79
Query: 79 ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRV 138
LF HLTV NIA G+ A+V+++LE V LE +R+P+Q+SGGQRQRV
Sbjct: 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRV 139
Query: 139 ALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIAT 198
ALAR L + +LLLDEPF D +R E+ L+++ DE +T + ++H+ E++M++A
Sbjct: 140 ALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVAD 199
Query: 199 RFIVIAGGQIVYDGDPDRL 217
R +V++ G+I G PD +
Sbjct: 200 RIVVMSNGKIEQIGSPDEV 218
>gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 172 bits (437), Expect = 1e-43
Identities = 78/203 (38%), Positives = 123/203 (60%), Gaps = 12/203 (5%)
Query: 18 FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILF 77
D +N E + +LGPSG GK+T+L L+AGF+ P G I L+GQ+ T R ++ +F
Sbjct: 33 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVF 92
Query: 78 QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQ----VKQMLEKVFLEDFFNRFPSQMSGG 133
Q LF H+TV++N+A G LR+ A+ V + L V LE+F R P Q+SGG
Sbjct: 93 QSYALFPHMTVFENVAFG----LRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGG 148
Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQL--TLLMISHNLE 191
Q+QRVA+AR ++ + +LLLDE + D LR ++ LK + +R+L T + ++H+ E
Sbjct: 149 QQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKAL--QRKLGITFVFVTHDQE 206
Query: 192 DSMQIATRFIVIAGGQIVYDGDP 214
+++ ++ R +V+ G+I DG P
Sbjct: 207 EALTMSDRIVVMRDGRIEQDGTP 229
>gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely.
Length = 353
Score = 171 bits (436), Expect = 1e-43
Identities = 79/201 (39%), Positives = 118/201 (58%), Gaps = 10/201 (4%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQ 78
V K E + +LGPSG GK+TLL ++AG + T G+I+ G++ TR P KR I+FQ
Sbjct: 24 SLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83
Query: 79 ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQ-VKQMLEKVFLEDFFNRFPSQMSGGQRQR 137
LF +LTV NIA G+ N + + A+ V ++L+ V L ++P Q+SGGQ+QR
Sbjct: 84 SYALFPNLTVADNIAYGLK-NRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQR 142
Query: 138 VALARCLIRQKPILLLDEPFAVFDP----ALRHEILGLLKQVCDERQLTLLMISHNLEDS 193
VALAR L +LLLDEP + D LR EI L +++ +T +M++H+ E++
Sbjct: 143 VALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRL----GVTTIMVTHDQEEA 198
Query: 194 MQIATRFIVIAGGQIVYDGDP 214
+ +A R +V+ G I G P
Sbjct: 199 LSMADRIVVMNHGVIEQVGTP 219
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 168 bits (426), Expect = 2e-42
Identities = 85/218 (38%), Positives = 130/218 (59%), Gaps = 17/218 (7%)
Query: 13 NLKMQFDFQ---------VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNH 63
NL FD Q + K E +LG SG GKSTLL ++AGF+ PT G I L+G +
Sbjct: 24 NLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL 83
Query: 64 TRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFF 123
+ P +RP++++FQ LF H+TV QNIA G+ + ++V +ML V +++F
Sbjct: 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFA 143
Query: 124 NRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALR----HEILGLLKQVCDER 179
R P Q+SGGQRQRVALAR L ++ +LLLDEP D LR E++ +L++V
Sbjct: 144 KRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV---- 199
Query: 180 QLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217
+T +M++H+ E++M +A R ++ G+ V G+P+ +
Sbjct: 200 GVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included).
Length = 325
Score = 161 bits (410), Expect = 1e-40
Identities = 76/192 (39%), Positives = 120/192 (62%), Gaps = 8/192 (4%)
Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHLTVW 89
+LGPSG GK+TLL L+AGF+ P GSI L+G++ T P R ++++FQ LF H+TV
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 90 QNIALGI----APNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLI 145
+N+A G+ P + +V + L V LE+F +R P Q+SGGQ+QRVALAR L+
Sbjct: 61 ENVAFGLKMRKVPRAEIK----PRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALV 116
Query: 146 RQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAG 205
+ ILLLDEP + D LR ++ LK + ++ +T + ++H+ E++M ++ R ++
Sbjct: 117 FKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRK 176
Query: 206 GQIVYDGDPDRL 217
G+I G P+ +
Sbjct: 177 GKIAQIGTPEEI 188
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 156 bits (395), Expect = 7e-39
Identities = 79/203 (38%), Positives = 124/203 (61%), Gaps = 10/203 (4%)
Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENN 81
+ + + +LGPSG+GK+TLL ++AG ++ T G I +G + +R R + +FQ
Sbjct: 25 IPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYA 84
Query: 82 LFSHLTVWQNIALGIA-------PNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQ 134
LF H+TV+ NIA G+ PN A+V Q+LE V L +R+P+Q+SGGQ
Sbjct: 85 LFRHMTVFDNIAFGLTVLPRRERPNA---AAIKAKVTQLLEMVQLAHLADRYPAQLSGGQ 141
Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSM 194
+QRVALAR L + ILLLDEPF D +R E+ L+Q+ +E + T + ++H+ E++M
Sbjct: 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAM 201
Query: 195 QIATRFIVIAGGQIVYDGDPDRL 217
++A R +V++ G I G PD++
Sbjct: 202 EVADRVVVMSQGNIEQAGTPDQV 224
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature.
Length = 363
Score = 155 bits (392), Expect = 1e-38
Identities = 75/211 (35%), Positives = 127/211 (60%), Gaps = 10/211 (4%)
Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSP------SK 70
D + K E VI+G SG+GKST + ++ PT G IF++G+N + SP +
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRR 70
Query: 71 RPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVK--QMLEKVFLEDFFNRFPS 128
+ + ++FQ+ LF H+T+ QN +LG P L Q + K ++L+ V LE++ +R+P
Sbjct: 71 KKIGMVFQQFALFPHMTILQNTSLG--PELLGWPEQERKEKALELLKLVGLEEYEHRYPD 128
Query: 129 QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISH 188
++SGG +QRV LAR L + ILL+DE F+ DP +R + LK++ Q T++ I+H
Sbjct: 129 ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITH 188
Query: 189 NLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
+L+++++I R +++ G+IV G PD ++
Sbjct: 189 DLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates.
Length = 243
Score = 150 bits (380), Expect = 3e-37
Identities = 74/212 (34%), Positives = 113/212 (53%), Gaps = 13/212 (6%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK-----RPL 73
+ +N E + I+GPSGAGKSTLL + P+ GSI L G + T+ K R +
Sbjct: 22 NLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81
Query: 74 SILFQENNLFSHLTVWQNI---ALGIAPNLR-----LDHYQHAQVKQMLEKVFLEDFFNR 125
++FQ NL LTV +N+ LG P R + LE+V L D +
Sbjct: 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQ 141
Query: 126 FPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLM 185
Q+SGGQ+QRVA+AR L +Q ++L DEP A DP +++ LK++ E +T+++
Sbjct: 142 RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVII 201
Query: 186 ISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217
H ++ + + A R + + G+IV+DG P L
Sbjct: 202 NLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 141 bits (358), Expect = 1e-34
Identities = 70/206 (33%), Positives = 122/206 (59%), Gaps = 6/206 (2%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPL----S 74
D +++ E +VI+GPSG+GKSTLL + + T G + ++G +R +
Sbjct: 21 DLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80
Query: 75 ILFQENNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQVKQMLEKVFLEDFFNRFPSQMSGG 133
++FQ+ LF HLT +N+ G + Q +++L KV L + + +PS++SGG
Sbjct: 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGG 140
Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDS 193
Q+QRVA+AR L + ++L DEP + DP LRHE+L +++ + +E +T+++++H + +
Sbjct: 141 QQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFA 199
Query: 194 MQIATRFIVIAGGQIVYDGDPDRLMN 219
++A+R I I G+I DGDP L+
Sbjct: 200 EKVASRLIFIDKGRIAEDGDPQVLIK 225
>gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 138 bits (351), Expect = 1e-33
Identities = 79/227 (34%), Positives = 120/227 (52%), Gaps = 19/227 (8%)
Query: 1 MIKLDHLIYCYDNLKMQF------DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRG 54
MI+L ++ + + E ++G SGAGKSTL+ + + PT G
Sbjct: 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG 60
Query: 55 SIFLNGQNHTRSSPS-----KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQ 109
+ ++GQ+ T S +R + ++FQ NL S TV+ N+AL P L L A+
Sbjct: 61 RVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVAL---P-LELAGTPKAE 116
Query: 110 VKQ----MLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALR 165
+K +LE V L D +R+P+Q+SGGQ+QRVA+AR L +LL DE + DPA
Sbjct: 117 IKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 166 HEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDG 212
IL LLK + E LT+++I+H ++ +I R VI G++V G
Sbjct: 177 RSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQG 223
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 138 bits (348), Expect = 2e-33
Identities = 69/221 (31%), Positives = 119/221 (53%), Gaps = 5/221 (2%)
Query: 2 IKLDHLIYCY--DNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYP--TRGSIF 57
I++DHL Y + + ++ E + ++G SG GK+TLL +AGF G I
Sbjct: 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIA 65
Query: 58 LNGQNHTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKV 117
+ ++ T + P KR L++LFQ LF HL V N+A G+ +V L+ V
Sbjct: 66 IADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLV 125
Query: 118 FLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCD 177
L D P+Q+SGG +QR+A+AR + + +LLLDEP + D +R + + + +
Sbjct: 126 GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHE 185
Query: 178 E-RQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217
E +LT+L ++H+ +D++ +A + ++ G++ G+P L
Sbjct: 186 ELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
>gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 136 bits (345), Expect = 5e-33
Identities = 73/206 (35%), Positives = 112/206 (54%), Gaps = 10/206 (4%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK--RPLSIL 76
+ E + ILGP+GAGKSTLL ++G P G + LNG+ SP++ R ++L
Sbjct: 22 SLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81
Query: 77 FQENNL-FSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQR 135
Q ++L F TV + +A+G AP+ A V L +V L R Q+SGG++
Sbjct: 82 PQHSSLSFP-FTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQ 140
Query: 136 QRVALARCLIR------QKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189
QRV LAR L + LLLDEP + D A +H +L L +Q+ ER L ++++ H+
Sbjct: 141 QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHD 200
Query: 190 LEDSMQIATRFIVIAGGQIVYDGDPD 215
L + + A R +++ G++V DG P
Sbjct: 201 LNLAARYADRIVLLHQGRLVADGTPA 226
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export.
Length = 694
Score = 135 bits (343), Expect = 7e-33
Identities = 73/216 (33%), Positives = 112/216 (51%), Gaps = 25/216 (11%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLSILF 77
+ E++ I+G G+GKSTLL L+ G PT GS+ L+G + + P+ +R + +
Sbjct: 486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVP 545
Query: 78 QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPS--------- 128
Q+ LF + T+ NIALG AP + ++ + E + +F R P
Sbjct: 546 QDPRLF-YGTLRDNIALG-AP-----YADDEEILRAAELAGVTEFVRRHPDGLDMQIGER 598
Query: 129 --QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMI 186
+SGGQRQ VALAR L+R PILLLDEP + D LK+ + TL+++
Sbjct: 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGK--TLVLV 656
Query: 187 SHNLEDSM-QIATRFIVIAGGQIVYDGDPDRLMNGL 221
+H S+ + R IV+ G+IV DG D+++ L
Sbjct: 657 THRT--SLLDLVDRIIVMDNGRIVADGPKDQVLEAL 690
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking
protein.
Length = 214
Score = 135 bits (341), Expect = 1e-32
Identities = 70/199 (35%), Positives = 110/199 (55%), Gaps = 16/199 (8%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN----HTRSSPS-KRPL 73
+ K E + + GPSGAGK+TLL L+ G P+RG + + G++ R P +R +
Sbjct: 22 SLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81
Query: 74 SILFQENNLFSHLTVWQNIAL-----GIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPS 128
++FQ+ L TV++N+AL G Q +V L +V LE + FP
Sbjct: 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKERE----IQR-RVGAALRQVGLEHKADAFPE 136
Query: 129 QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISH 188
Q+SGG++QRVA+AR ++ P+LL DEP DP L IL LLK++ R T+++ +H
Sbjct: 137 QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATH 195
Query: 189 NLEDSMQIATRFIVIAGGQ 207
+L ++A R I++ G+
Sbjct: 196 DLSLVDRVAHRVIILDDGR 214
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 132 bits (333), Expect = 1e-31
Identities = 71/206 (34%), Positives = 121/206 (58%), Gaps = 4/206 (1%)
Query: 12 DNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKR 71
DNL + + + + +LGPSG GK+T+L L+AG + PT G IF++G++ T S +R
Sbjct: 23 DNL----NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR 78
Query: 72 PLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMS 131
+ ++FQ LF H+++ +N+ G+ + +VK+ LE V L F +R+ Q+S
Sbjct: 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQIS 138
Query: 132 GGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLE 191
GGQ+QRVALAR LI + +LL DEP + D LR + ++++ + +T L ++H+
Sbjct: 139 GGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS 198
Query: 192 DSMQIATRFIVIAGGQIVYDGDPDRL 217
++ ++ IV+ G+I+ G P L
Sbjct: 199 EAFAVSDTVIVMNKGKIMQIGSPQEL 224
>gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 132 bits (333), Expect = 1e-31
Identities = 78/248 (31%), Positives = 135/248 (54%), Gaps = 21/248 (8%)
Query: 2 IKLDHLIYCYDNLKMQFD--------FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTR 53
IK+++L + Y F+ ++ E + ++G +G+GKSTL+ + G PT
Sbjct: 3 IKIENLTHIY-MEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61
Query: 54 GSIFLNGQNHTRSSPS----KRPLSILFQ--ENNLFSHLTVWQNIALGIAPNLRL-DHYQ 106
G I ++G + T ++ + ++FQ E LF T+ ++IA G NL L +
Sbjct: 62 GKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE-TIEKDIAFGPI-NLGLSEEEI 119
Query: 107 HAQVKQMLEKVFL--EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPAL 164
+VK+ + V L ED+ ++ P ++SGGQ++RVA+A + + IL+LDEP A DP
Sbjct: 120 ENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
Query: 165 RHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGL-IP 223
R EIL +K++ E +T++++SH++ED ++A R IV+ G+ G P + +
Sbjct: 180 RDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETL 239
Query: 224 ESTLLGIP 231
ES L +P
Sbjct: 240 ESIGLAVP 247
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter.
Length = 354
Score = 131 bits (332), Expect = 1e-31
Identities = 69/209 (33%), Positives = 113/209 (54%), Gaps = 14/209 (6%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRS------SPSKRP 72
DF + I G SG+GK+TL+ L+AG P G I LNG+ S P KR
Sbjct: 17 DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRR 76
Query: 73 LSILFQENNLFSHLTVWQNIALGIA---PNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQ 129
+ +FQE LF HL+V N+ G+ P+ R + +V ++L + R P +
Sbjct: 77 IGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISF--ERVIELLG---IGHLLGRLPGR 131
Query: 130 MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189
+SGG++QRVA+ R L+ +LL+DEP A D ++EIL L+++ E + +L +SH+
Sbjct: 132 LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHS 191
Query: 190 LEDSMQIATRFIVIAGGQIVYDGDPDRLM 218
L++ +++A R +V+ G++ G +
Sbjct: 192 LQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase.
Length = 230
Score = 130 bits (328), Expect = 4e-31
Identities = 66/191 (34%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQ 78
+ + + E I ++G SG GKSTLL+L++G PT G + L G+ T P + ++FQ
Sbjct: 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM---VVFQ 61
Query: 79 ENNLFSHLTVWQNIALGI---APNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQR 135
+L LTV +NIAL + P+L + A V++ + V L + ++ P Q+SGG +
Sbjct: 62 NYSLLPWLTVRENIALAVDRVLPDLSKSE-RRAIVEEHIALVGLTEAADKRPGQLSGGMK 120
Query: 136 QRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQ 195
QRVA+AR L + +LLLDEPF D R + L Q+ +E ++T+LM++H++++++
Sbjct: 121 QRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALL 180
Query: 196 IATRFIVIAGG 206
++ R +++ G
Sbjct: 181 LSDRVVMLTNG 191
>gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP)
Family protein.
Length = 216
Score = 129 bits (327), Expect = 5e-31
Identities = 76/213 (35%), Positives = 116/213 (54%), Gaps = 28/213 (13%)
Query: 1 MIKLDHLIYCY--------DNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPT 52
MI+ + + Y DNL +F + K E + ++G SGAGKST L L+ G + PT
Sbjct: 1 MIRFEQVSKAYPGGHQPALDNL----NFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT 56
Query: 53 RGSIFLNGQNHTRSSPSKRPL-----SILFQENNLFSHLTVWQNIALGIAPNLRLDHYQ- 106
RG I NGQ+ TR + P ++FQ++ L S TV+ N+A LR+
Sbjct: 57 RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFP----LRIIGVPP 112
Query: 107 ---HAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPA 163
+ +V LEKV LE + P Q+SGG++QRVA+AR ++ + P+LL DEP DP
Sbjct: 113 RDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPE 172
Query: 164 LRHEILGLLKQVCDERQLTLLMISH--NLEDSM 194
L +I+ L ++ + R T+L+ +H NL ++
Sbjct: 173 LSRDIMRLFEEF-NRRGTTVLVATHDINLVETY 204
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 129 bits (326), Expect = 6e-31
Identities = 70/236 (29%), Positives = 118/236 (50%), Gaps = 22/236 (9%)
Query: 2 IKLDHLIYCYDNLKM--QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLN 59
++ + + L + +F V E++ ++GPSG+GKST+L ++ + G I +
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 60 GQNHTRSSPSKRPL---------------SILFQENNLFSHLTVWQNIALGIAPNLRLDH 104
G+ PL ++FQ NLF H TV N+ AP L L
Sbjct: 61 GEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTE--APVLVLGM 118
Query: 105 YQHAQVK---QMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFD 161
+ K ++L+ V L D + P+Q+SGGQ+QRVA+AR L + ++L DE + D
Sbjct: 119 ARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALD 178
Query: 162 PALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217
P L E+L +++++ E LT+L+++H + + + A R G+IV G PD +
Sbjct: 179 PELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 128 bits (324), Expect = 1e-30
Identities = 75/212 (35%), Positives = 114/212 (53%), Gaps = 13/212 (6%)
Query: 1 MIKLDHLIYCYDNLKMQFD--FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFL 58
M+++ HL Y D + E +V+LGPSG GK+TLL+L+AGF GSI L
Sbjct: 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60
Query: 59 NGQNHTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQ----VKQML 114
+G+ + ++FQ L V N+A G L+L + Q QML
Sbjct: 61 DGKPVEGPGAER---GVVFQNEGLLPWRNVQDNVAFG----LQLAGVEKMQRLEIAHQML 113
Query: 115 EKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQ 174
+KV LE R+ Q+SGGQRQRV +AR L +LLLDEPF D R ++ LL +
Sbjct: 114 KKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLK 173
Query: 175 VCDERQLTLLMISHNLEDSMQIATRFIVIAGG 206
+ E +L+I+H++E+++ +AT ++++ G
Sbjct: 174 LWQETGKQVLLITHDIEEAVFMATELVLLSPG 205
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 128 bits (324), Expect = 1e-30
Identities = 71/219 (32%), Positives = 124/219 (56%), Gaps = 18/219 (8%)
Query: 4 LDHLIYCYDNLKMQ--FD--FQVNKAERIVIL-GPSGAGKSTLLSLMAGFKYPTRGSIF- 57
L+H Y + +L+ Q FD ++N E IVIL GPSG+GK+TLL+L+ G + GS+
Sbjct: 7 LNHY-YGHGSLRKQVLFDINLEINPGE-IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKV 64
Query: 58 ----LNGQNHTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQVKQ 112
L G + +R + +FQ +NL LT QN+ + + L + + + +
Sbjct: 65 LGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARA 124
Query: 113 MLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLL 172
MLE V L D + +P +SGGQ+QRVA+AR L+ + ++L DEP A D +++ L+
Sbjct: 125 MLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELM 184
Query: 173 KQVCDERQLTLLMISHNLEDS--MQIATRFIVIAGGQIV 209
+++ E+ T+L+++H D+ + +A R + + G+++
Sbjct: 185 QKLAREQGCTILIVTH---DNRILDVADRIVHMEDGKLL 220
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 126 bits (317), Expect = 5e-30
Identities = 68/204 (33%), Positives = 118/204 (57%), Gaps = 6/204 (2%)
Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS------KRPLSI 75
+ + E VI+G SG+GKST++ L+ PTRG + ++G + + S + ++ +++
Sbjct: 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAM 110
Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQR 135
+FQ L H+TV N A G+ + + L +V LE++ + +P ++SGG R
Sbjct: 111 VFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMR 170
Query: 136 QRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQ 195
QRV LAR L ILL+DE F+ DP +R E+ L ++ + Q T++ ISH+L+++M+
Sbjct: 171 QRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMR 230
Query: 196 IATRFIVIAGGQIVYDGDPDRLMN 219
I R ++ G++V G PD ++N
Sbjct: 231 IGDRIAIMQNGEVVQVGTPDEILN 254
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 125 bits (316), Expect = 8e-30
Identities = 66/205 (32%), Positives = 116/205 (56%), Gaps = 16/205 (7%)
Query: 18 FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILF 77
+ +++ E +V +GPSG GKSTLL ++AG + T G +F+ + P++R + ++F
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81
Query: 78 QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVF----LEDFFNRFPSQMSGG 133
Q L+ HL+V +N++ G L+L + ++ Q + +V L +R P +SGG
Sbjct: 82 QSYALYPHLSVAENMSFG----LKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGG 137
Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPAL----RHEILGLLKQVCDERQLTLLMISHN 189
QRQRVA+ R L+ + + LLDEP + D AL R EI L K++ T++ ++H+
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL----GRTMIYVTHD 193
Query: 190 LEDSMQIATRFIVIAGGQIVYDGDP 214
++M +A + +V+ G++ G P
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKP 218
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 124 bits (314), Expect = 2e-29
Identities = 77/227 (33%), Positives = 132/227 (58%), Gaps = 16/227 (7%)
Query: 2 IKLDHLIYCYDNLKMQFD--FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLN 59
I+L+ + Y + FD + E +V+LGPSGAGKS+LL ++ + P G++ +
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 60 GQNHTRSSPS--------KRPLSILFQENNLFSHLTVWQNIALGIAPN--LRLDHYQ-HA 108
G + S +R + ++FQ+ NL+ HLTV QN L AP L L Q A
Sbjct: 63 GNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQN--LIEAPCRVLGLSKDQALA 120
Query: 109 QVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEI 168
+ +++LE++ L+ + +RFP +SGGQ+QRVA+AR L+ + +LL DEP A DP + +I
Sbjct: 121 RAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180
Query: 169 LGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPD 215
+ +++++ E +T ++++H +E + + A+R + + G IV GD
Sbjct: 181 VSIIREL-AETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 123 bits (311), Expect = 4e-29
Identities = 75/222 (33%), Positives = 130/222 (58%), Gaps = 12/222 (5%)
Query: 2 IKLDHLIYCYDNLKMQ----FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIF 57
I+++H+ + Y + F V + E + I+G +G+GKSTL L+ G P G+I
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 58 LNGQNHTRSS--PSKRPLSILFQE-NNLFSHLTVWQNIALGIAPN--LRLDHYQHAQVKQ 112
+ G + + +R + ++FQ +N F TV ++A G+ R + + +V Q
Sbjct: 66 VGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVE--RVDQ 123
Query: 113 MLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLL 172
L +V +EDF NR P ++SGGQ+QRVA+A L Q I++LDE ++ DP R E+L +
Sbjct: 124 ALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETV 183
Query: 173 KQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDP 214
+Q+ +++ +T+L I+H+L+++ Q A R IV+ G+I+ +G P
Sbjct: 184 RQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTP 224
>gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 529
Score = 122 bits (309), Expect = 7e-29
Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 21/184 (11%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-HTRSSPSKRPLSILF 77
+ ER+ ILGPSG+GKSTLL L+ G P +G + L+G + + +R +S+
Sbjct: 355 SLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFA 414
Query: 78 QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP---------- 127
Q+ +LF TV N+ LG P+ ++ LE+V L D+ P
Sbjct: 415 QDAHLFD-TTVRDNLRLG-RPDA-----TDEELWAALERVGLADWLRSLPDGLDTVLGEG 467
Query: 128 -SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMI 186
+++SGG+RQR+ALAR L+ PILLLDEP D E+L L + T+++I
Sbjct: 468 GARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGK--TVVVI 525
Query: 187 SHNL 190
+H+L
Sbjct: 526 THHL 529
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 121 bits (306), Expect = 1e-28
Identities = 69/188 (36%), Positives = 108/188 (57%), Gaps = 5/188 (2%)
Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS-----KRPLSILFQENNLFS 84
++G SGAGKSTL+ + + PT GS+ ++GQ+ T S S +R + ++FQ NL S
Sbjct: 36 VIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95
Query: 85 HLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCL 144
TV+ N+AL + + +V ++L V L D + +PS +SGGQ+QRVA+AR L
Sbjct: 96 SRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARAL 155
Query: 145 IRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIA 204
+LL DE + DPA IL LLK++ LT+L+I+H ++ +I VI+
Sbjct: 156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVIS 215
Query: 205 GGQIVYDG 212
G+++ G
Sbjct: 216 NGELIEQG 223
>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 119 bits (302), Expect = 4e-28
Identities = 75/223 (33%), Positives = 111/223 (49%), Gaps = 24/223 (10%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLSIL 76
+F + +RI ++GPSGAGK++LL+ + GF P +GS+ +NG P ++ LS +
Sbjct: 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGF-LPYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 77 FQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP--------- 127
Q L H T+ N+ LG P+ Q++Q LE ++ +F P
Sbjct: 429 GQNPQLP-HGTLRDNVLLG-NPDA-----SDEQLQQALENAWVSEFLPLLPQGLDTPIGD 481
Query: 128 --SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLM 185
+ +S GQ QR+ALAR L++ +LLLDEP A D ++ L R+ T LM
Sbjct: 482 QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA--SRRQTTLM 539
Query: 186 ISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGLIPESTLL 228
++H LED Q V+ GQIV GD L +TLL
Sbjct: 540 VTHQLEDLAQWDQ-IWVMQDGQIVQQGDYAELSQAGGLFATLL 581
>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins.
Length = 206
Score = 119 bits (301), Expect = 5e-28
Identities = 64/197 (32%), Positives = 107/197 (54%), Gaps = 15/197 (7%)
Query: 2 IKLDHLIYCYDNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ 61
D +I D+L + + K + I+G SG+GKSTLL+++ + G ++LNG+
Sbjct: 7 KFGDKIIL--DDLNLTIE----KGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGK 60
Query: 62 NHTRSSPSKR------PLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQ-VKQML 114
+ K L LFQ L + TV +N+ LG+ +L + + K+ L
Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLK-YKKLSKKEKREKKKEAL 119
Query: 115 EKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQ 174
EKV L + ++SGG++QRVALAR +++ P++L DEP DP R E+L LL +
Sbjct: 120 EKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLE 179
Query: 175 VCDERQLTLLMISHNLE 191
+ DE + T+++++H+ E
Sbjct: 180 LNDEGK-TIIIVTHDPE 195
>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
Unfortunately, the gene symbol nomenclature adopted
based on this operon in B. subtilis assigns cydC to the
third gene in the operon where this gene is actually
homologous to the E. coli cydD gene. We have chosen to
name all homologs in this family in accordance with the
precedence of publication of the E. coli name, CydD.
Length = 529
Score = 118 bits (298), Expect = 1e-27
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 22/189 (11%)
Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSIL 76
F V ER+ ++GPSGAGKSTLL+L+ GF PT GSI +NG + I
Sbjct: 340 PVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399
Query: 77 F--QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP------- 127
+ Q LF+ T+ +NI L R D A++++ LE+ L++F P
Sbjct: 400 WVPQHPFLFAG-TIAENIRLA-----RPDA-SDAEIRRALERAGLDEFVAALPQGLDTLI 452
Query: 128 ----SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183
+ +SGGQ QR+ALAR +R P+LLLDEP A D + L+ + R T+
Sbjct: 453 GEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGR--TV 510
Query: 184 LMISHNLED 192
L+++H L
Sbjct: 511 LLVTHRLAL 519
>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines.
Length = 382
Score = 117 bits (296), Expect = 2e-27
Identities = 63/204 (30%), Positives = 114/204 (55%), Gaps = 10/204 (4%)
Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-----HTRSSPSKRPL--- 73
+ + E V++G SG+GKS+LL + G +RGS+ + + + + R L
Sbjct: 47 IEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTH 106
Query: 74 --SILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMS 131
S++FQ+ L LTV +N+A G+ + + +V + LE V L + ++ P ++S
Sbjct: 107 RVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELS 166
Query: 132 GGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLE 191
GG +QRV LAR ILL+DEPF+ DP +R ++ L ++ + T++ +SH+L+
Sbjct: 167 GGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD 226
Query: 192 DSMQIATRFIVIAGGQIVYDGDPD 215
++++I R ++ GG+I+ G P+
Sbjct: 227 EALKIGNRIAIMEGGRIIQHGTPE 250
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 117 bits (296), Expect = 2e-27
Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 25/220 (11%)
Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLS 74
+ V E + ++GPSGAGKSTL L+ F P G I L+G + + P+ + ++
Sbjct: 358 GLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMA 417
Query: 75 ILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPS------ 128
++ Q+ LF+ +V +NI G R D +V+ +F + P
Sbjct: 418 LVPQDPVLFAA-SVMENIRYG-----RPDA-TDEEVEAAARAAHAHEFISALPEGYDTYL 470
Query: 129 -----QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183
+SGGQRQR+A+AR +++ PILLLDE + D + L+ + R T
Sbjct: 471 GERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGR--TT 528
Query: 184 LMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLM--NGL 221
L+I+H L ++ A R +V+ G+IV G L+ GL
Sbjct: 529 LIIAHRLA-TVLKADRIVVMDQGRIVAQGTHAELIAKGGL 567
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 117 bits (295), Expect = 3e-27
Identities = 64/191 (33%), Positives = 106/191 (55%), Gaps = 7/191 (3%)
Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-HTRSSPSK-RPLSILFQENNLFSHLT 87
+LGP+G+GKSTLL L+AG P G++ L G + H S ++ R ++++ Q+++ LT
Sbjct: 32 LLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLT 91
Query: 88 VWQNIALGIAPNLRL----DHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARC 143
V +ALG P+ L + A V + L + L +R S +SGG+RQRV +AR
Sbjct: 92 VRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARA 151
Query: 144 LIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVI 203
L ++ +LLLDEP D + E L L++++ +T++ H+L + +V+
Sbjct: 152 LAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT-GVTVVAALHDLNLAASYCDHVVVL 210
Query: 204 AGGQIVYDGDP 214
GG++V G P
Sbjct: 211 DGGRVVAAGPP 221
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina.
Length = 221
Score = 117 bits (295), Expect = 3e-27
Identities = 65/182 (35%), Positives = 101/182 (55%), Gaps = 12/182 (6%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRP------ 72
+ K E + I+G SG+GKSTLL L+ G PT G + NGQ+ ++ S ++R
Sbjct: 25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKK 84
Query: 73 LSILFQENNLFSHLTVWQNIALGIAPNL-RLDHYQHAQ--VKQMLEKVFLEDFFNRFPSQ 129
L ++Q ++L T +N+A+ P L + A+ +MLEKV LE N PS+
Sbjct: 85 LGFIYQFHHLLPDFTALENVAM---PLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSE 141
Query: 130 MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189
+SGG+RQRVA+AR L+ Q ++L DEP D I L+ ++ E + L+++H+
Sbjct: 142 LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD 201
Query: 190 LE 191
LE
Sbjct: 202 LE 203
>gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 117 bits (295), Expect = 3e-27
Identities = 66/227 (29%), Positives = 130/227 (57%), Gaps = 10/227 (4%)
Query: 1 MIKLDHLIYCYDNLKMQ----FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI 56
MIK++++ + Y N + F++N+ E + ILG +G+GKST+ ++ G P G I
Sbjct: 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 57 FLNGQNHTRSSPSK--RPLSILFQE-NNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQVKQ 112
++G ++ + + + + I+FQ +N F TV +IA G+ N ++ + +
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLE-NKKVPPKKMKDIIDD 125
Query: 113 MLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLL 172
+ +KV +ED+ ++ P +SGGQ+QRVA+A L I++ DE ++ DP + EI ++
Sbjct: 126 LAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM 185
Query: 173 KQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
+ R+ TL+ I+H++++++ A + IV + G+++ G P ++N
Sbjct: 186 VDLRKTRKKTLISITHDMDEAIL-ADKVIVFSEGKLIAQGKPKEILN 231
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 115 bits (290), Expect = 9e-27
Identities = 63/184 (34%), Positives = 102/184 (55%), Gaps = 9/184 (4%)
Query: 28 IVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHLT 87
+ ++G SG GKSTLL L+AG + P+ G + L G + ++ ++FQ+ L
Sbjct: 41 VAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGT--APLAEAREDTRLMFQDARLLPWKK 97
Query: 88 VWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQ 147
V N+ LG+ R Q L V L D N +P+ +SGGQ+QRVALAR LI +
Sbjct: 98 VIDNVGLGLKGQWR------DAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHR 151
Query: 148 KPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQ 207
+LLLDEP D R E+ L++ + + T+L+++H++ +++ +A R ++I G+
Sbjct: 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGK 211
Query: 208 IVYD 211
I D
Sbjct: 212 IGLD 215
>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 115 bits (290), Expect = 1e-26
Identities = 69/200 (34%), Positives = 111/200 (55%), Gaps = 20/200 (10%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQ 78
D V E IV++GPSG GKSTLL ++AG + T G I++ G+ P+ R ++++FQ
Sbjct: 24 DLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQ 83
Query: 79 ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQ----VKQMLEKVFLEDFFNRFPSQMSGGQ 134
L+ H++V +N+A G+ + + + ++LE LE +R P ++SGGQ
Sbjct: 84 NYALYPHMSVRENMAYGLK-IRGMPKAEIEERVAEAARILE---LEPLLDRKPRELSGGQ 139
Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDPALRH----EILGLLKQVCDERQL--TLLMISH 188
RQRVA+ R ++R+ + L DEP + D LR EI L R+L T L ++H
Sbjct: 140 RQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRL------HRRLKTTSLYVTH 193
Query: 189 NLEDSMQIATRFIVIAGGQI 208
+ ++M +A R +V+ GG
Sbjct: 194 DQVEAMTLADRVVVMNGGVA 213
>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 114 bits (288), Expect = 2e-26
Identities = 68/216 (31%), Positives = 106/216 (49%), Gaps = 26/216 (12%)
Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLS 74
Q+ E++ +LG +G GKSTLL L+ P +G I LNGQ S + ++ +S
Sbjct: 358 GLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAIS 417
Query: 75 ILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPS------ 128
++ Q +LFS T+ N+ L APN + ++L++V LE
Sbjct: 418 VVSQRVHLFSA-TLRDNLLLA-APNA-----SDEALIEVLQQVGLEKLLEDDKGLNAWLG 470
Query: 129 ----QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLL 184
Q+SGG+++R+ +AR L+ P+LLLDEP D +IL LL + + T+L
Sbjct: 471 EGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNK--TVL 528
Query: 185 MISHNLE--DSMQIATRFIVIAGGQIVYDGDPDRLM 218
MI+H L + R V+ GQI+ G L+
Sbjct: 529 MITHRLTGLEQFD---RICVMDNGQIIEQGTHQELL 561
>gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 230
Score = 114 bits (288), Expect = 2e-26
Identities = 61/204 (29%), Positives = 112/204 (54%), Gaps = 9/204 (4%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRP-LSILF 77
+V K E +LG +G GK+TLL + G GSI L+G++ T+ P +R I +
Sbjct: 20 SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79
Query: 78 --QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVF--LEDFFNRFPSQMSGG 133
Q +F LTV +N+ G+A R + ++ + ++F L++ R +SGG
Sbjct: 80 VPQGREIFPRLTVEENLLTGLAALPR----RSRKIPDEIYELFPVLKEMLGRRGGDLSGG 135
Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDS 193
Q+Q++A+AR L+ + +LLLDEP P++ +I +++++ E + +L++ L+ +
Sbjct: 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFA 195
Query: 194 MQIATRFIVIAGGQIVYDGDPDRL 217
++A R+ V+ G++V G D L
Sbjct: 196 RELADRYYVMERGRVVASGAGDEL 219
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 114 bits (286), Expect = 3e-26
Identities = 68/226 (30%), Positives = 127/226 (56%), Gaps = 11/226 (4%)
Query: 1 MIKLDHLIYCYDNLKMQFD-----FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGS 55
+I++ +L + Y + ++ F V + E + I+G +G+GKST + L+ G G
Sbjct: 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63
Query: 56 IFLNGQNHTRSS--PSKRPLSILFQE-NNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQVK 111
I ++G T + + + ++FQ +N F TV ++A G+ N + H + +V
Sbjct: 64 IIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLE-NKGIPHEEMKERVN 122
Query: 112 QMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGL 171
+ LE V ++DF R P+++SGGQ+QRVA+A + + I++LDE ++ DP R E++
Sbjct: 123 EALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKT 182
Query: 172 LKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217
+K + D+ Q+T++ I+H+L D + ++ R +V+ GQ+ P L
Sbjct: 183 IKGIRDDYQMTVISITHDL-DEVALSDRVLVMKNGQVESTSTPREL 227
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc.
Length = 302
Score = 113 bits (285), Expect = 3e-26
Identities = 59/206 (28%), Positives = 107/206 (51%), Gaps = 14/206 (6%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK--RPLSIL 76
+F+V + E LGP+GAGK+T + ++ PT G+ + G + R P K R + I+
Sbjct: 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE-PRKVRRSIGIV 71
Query: 77 FQENNLFSHLTVWQNIAL-----GIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMS 131
Q ++ LT +N+ + G+ + + +++LE L + +R S
Sbjct: 72 PQYASVDEDLTGRENLEMMGRLYGLPKDEA-----EERAEELLELFELGEAADRPVGTYS 126
Query: 132 GGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLE 191
GG R+R+ +A LI Q +L LDEP DP R I ++ + +E +T+L+ +H +E
Sbjct: 127 GGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLTTHYME 185
Query: 192 DSMQIATRFIVIAGGQIVYDGDPDRL 217
++ ++ R +I G+I+ +G P+ L
Sbjct: 186 EADKLCDRIAIIDHGRIIAEGTPEEL 211
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 113 bits (284), Expect = 5e-26
Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 17/226 (7%)
Query: 1 MIKLDHLIYCYDN----LKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI 56
+++ L Y Y + LK +F+ K E + +LGP+GAGKSTL G PT G +
Sbjct: 1 ILETRDLKYSYPDGTEALK-GINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 57 FLNGQNHTRSSPS----KRPLSILFQ--ENNLFSHLTVWQNIALGIAP-NLRLDHYQ-HA 108
+ G+ S ++ + I+FQ ++ LF+ TV +++A G P NL L +
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP-TVEEDVAFG--PLNLGLSKEEVEK 116
Query: 109 QVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEI 168
+VK+ L+ V +E F N+ P +SGGQ++RVA+A L + I++LDEP + DP +I
Sbjct: 117 RVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQI 176
Query: 169 LGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDP 214
+ LL + ++ +T+++ +H+++ A + V++ G+I+ +G P
Sbjct: 177 MKLLYDL-NKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTP 221
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 112 bits (281), Expect = 1e-25
Identities = 69/214 (32%), Positives = 112/214 (52%), Gaps = 20/214 (9%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLS---- 74
D +V E + I+GPSG+GK+TLL + + P G+I + G ++ R LS
Sbjct: 23 DLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV-GDITIDTA---RSLSQQKG 78
Query: 75 ----------ILFQENNLFSHLTVWQNIALGIAPNLRLDHYQH-AQVKQMLEKVFLEDFF 123
+FQ NLF H TV +NI G + A+ +++L KV L
Sbjct: 79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE 138
Query: 124 NRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183
+P ++SGGQ+QRVA+AR L + ++L DEP + DP L E+L ++Q+ E++ T+
Sbjct: 139 TSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKR-TM 197
Query: 184 LMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217
++++H + + +A R I + G+IV G L
Sbjct: 198 VIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes.
Length = 571
Score = 110 bits (278), Expect = 2e-25
Identities = 67/219 (30%), Positives = 116/219 (52%), Gaps = 24/219 (10%)
Query: 18 FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN--HTRSSPSKRPLSI 75
+ E + ++G SG+GKSTL++L+ F P G I L+G + + +R +++
Sbjct: 351 ISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVAL 410
Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP-------- 127
+ Q+ LF+ T+ NIA G R + A++++ L + +DF ++ P
Sbjct: 411 VSQDVVLFND-TIANNIAYG-----RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIG 464
Query: 128 ---SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLL 184
+SGGQRQR+A+AR L++ PIL+LDE + D + L+++ R T L
Sbjct: 465 ENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGR--TTL 522
Query: 185 MISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLM--NGL 221
+I+H L +++ A R +V+ G+IV G + L+ NGL
Sbjct: 523 VIAHRLS-TIEKADRIVVMDDGRIVERGTHNELLARNGL 560
>gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 110 bits (276), Expect = 4e-25
Identities = 72/215 (33%), Positives = 119/215 (55%), Gaps = 21/215 (9%)
Query: 20 FQVNKAERIVILGPSGAGKST----LLSLMAGFKYPTRGSIFLNGQ-----NHTRSSPSK 70
F + E + ++G SG+GKST LL L+ ++G I+ +GQ N + P +
Sbjct: 307 FTLRPGETLGLVGESGSGKSTTGLALLRLIN-----SQGEIWFDGQPLHNLNRRQLLPVR 361
Query: 71 RPLSILFQENN--LFSHLTVWQNIALGIA---PNLRLDHYQHAQVKQMLEKVFLE-DFFN 124
+ ++FQ+ N L L V Q I G+ P L + QV ++E+V L+ + +
Sbjct: 362 HRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQ-REQQVIAVMEEVGLDPETRH 420
Query: 125 RFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLL 184
R+P++ SGGQRQR+A+AR LI + +++LDEP + D ++ +IL LLK + + QL L
Sbjct: 421 RYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYL 480
Query: 185 MISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
ISH+L + + IV+ G++V GD +R+
Sbjct: 481 FISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFA 515
Score = 77.4 bits (191), Expect = 3e-15
Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 21/219 (9%)
Query: 20 FQVNKAERIVILGPSGAGKS-TLLSLMAGFKYP----TRGSIFLNGQNHTRSSPSK---- 70
Q+ E + ++G SG+GKS T LS++ P G I +G++ +S
Sbjct: 30 LQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGV 89
Query: 71 --RPLSILFQENNLFSHLTVWQNIALGIAPNLRLD-----HYQHAQVKQMLEKVFLEDFF 123
++++FQE L + + L L ++ L++V +
Sbjct: 90 RGNKIAMIFQEP--MVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA 147
Query: 124 NR---FPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQ 180
R +P Q+SGG+RQRV +A L+ + +L+ DEP D +++ +IL LL+++ E
Sbjct: 148 KRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELN 207
Query: 181 LTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
+ LL I+HNL ++A R V+ G+ V L +
Sbjct: 208 MGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFS 246
>gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 109 bits (275), Expect = 6e-25
Identities = 64/209 (30%), Positives = 107/209 (51%), Gaps = 14/209 (6%)
Query: 21 QVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-----HTRSSPSKRPLSI 75
V + + I+GPSG GK+TLL L+ G P G I +G+N +R ++ +S+
Sbjct: 29 TVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSM 88
Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRL-DHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQ 134
LFQ LF+ + V+ N+A + + +L H+ V LE V L PS++SGG
Sbjct: 89 LFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGM 148
Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQ----LTLLMISHNL 190
+R ALAR + + +++ DEPF DP +G+L ++ E +T +++SH++
Sbjct: 149 ARRAALARAIALEPDLIMFDEPFVGQDPI----TMGVLVKLISELNSALGVTCVVVSHDV 204
Query: 191 EDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
+ + IA ++A +IV G L
Sbjct: 205 PEVLSIADHAYIVADKKIVAHGSAQALQA 233
>gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 109 bits (274), Expect = 7e-25
Identities = 68/235 (28%), Positives = 131/235 (55%), Gaps = 31/235 (13%)
Query: 1 MIKLDHLIYCYDNLKMQ--------FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPT 52
MIK ++ Y Y++ + + +V K E +VILG +G+GKST+ M P+
Sbjct: 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63
Query: 53 RGSIFLNG-----QNHTRSSPSKRPLSILFQ--ENNLFSHLTVWQNIA-----LGIAPN- 99
G ++++G + + +K + +FQ +N + + + V +++A LGI P
Sbjct: 64 EGKVYVDGLDTSDEENLWDIRNKAGM--VFQNPDNQIVATI-VEEDVAFGPENLGIPPEE 120
Query: 100 LRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAV 159
+R +V + L+KV + ++ P +SGGQ+QRVA+A L + ++ DEP A+
Sbjct: 121 IR------ERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAM 174
Query: 160 FDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDP 214
DP+ R E++ +K++ + +T+++I+H +E++++ A R IV+ G++V +G P
Sbjct: 175 LDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTP 228
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 108 bits (273), Expect = 1e-24
Identities = 60/186 (32%), Positives = 105/186 (56%), Gaps = 12/186 (6%)
Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ------NHTRSSPSKRPLSILFQENNLF 83
I G SGAGK++L++ ++G P +G I LNG+ P KR + +FQ+ LF
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLF 88
Query: 84 SHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARC 143
H V N+ G+A + Q ++ +L +E +R+P +SGG++QRVA+ R
Sbjct: 89 PHYKVRGNLRYGMAKS---MVAQFDKIVALLG---IEPLLDRYPGSLSGGEKQRVAIGRA 142
Query: 144 LIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVI 203
L+ +LL+DEP A D + E+L L+++ E + +L +SH+L++ +++A R +V+
Sbjct: 143 LLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVL 202
Query: 204 AGGQIV 209
G++
Sbjct: 203 EQGKVK 208
>gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 108 bits (272), Expect = 1e-24
Identities = 71/219 (32%), Positives = 122/219 (55%), Gaps = 23/219 (10%)
Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFL------NGQNHTRSSPSKRPLSILFQ--ENN 81
I+G +G+GKSTLL + G PT G++ + G+ + + P ++ + I+FQ E+
Sbjct: 38 IIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQ 97
Query: 82 LFSHLTVWQNIALGIAP-NLRL-DHYQHAQVKQMLEKVFL-EDFFNRFPSQMSGGQRQRV 138
LF TV ++I G P N + + + ++M+E V L E+ R P ++SGGQ +RV
Sbjct: 98 LFEE-TVEKDICFG--PMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRV 154
Query: 139 ALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIAT 198
A+A L + +L+LDEP A DP R E++ + ++ E+ LT ++++H++ED+ + A
Sbjct: 155 AIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYAD 214
Query: 199 RFIVIAGGQIVYDG-------DPDRLMN-GL-IPESTLL 228
+ +V+ G + G DPD L GL +PE+
Sbjct: 215 QIVVMHKGTVFLQGTPREIFADPDELEAIGLDLPETVKF 253
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 107 bits (269), Expect = 2e-24
Identities = 68/226 (30%), Positives = 120/226 (53%), Gaps = 20/226 (8%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS---------- 69
Q N + I I+G SG+GKST L + + P+ GSI +NGQ
Sbjct: 26 LQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKN 85
Query: 70 -----KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLD-HYQHAQVKQMLEKVFLEDFF 123
+ L+++FQ NL+SH+TV +N+ L L + + L KV +++
Sbjct: 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA 145
Query: 124 N-RFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLT 182
++P +SGGQ+QRV++AR L + +LL DEP + DP L E+L +++Q+ +E + T
Sbjct: 146 QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGK-T 204
Query: 183 LLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGLIPESTLL 228
+++++H + + +++ I + G+I +G P++L P+S L
Sbjct: 205 MVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN--PQSPRL 248
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 107 bits (269), Expect = 3e-24
Identities = 68/235 (28%), Positives = 123/235 (52%), Gaps = 29/235 (12%)
Query: 13 NLKMQF---------DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNH 63
L M+F + +V + E + ++GP+GAGK+T+ + + GF PT G+I L GQ H
Sbjct: 10 GLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQ-H 68
Query: 64 TRSSPS----KRPLSILFQENNLFSHLTVWQNIALG---------IAPNLRLDHYQHAQV 110
P + + FQ LF +TV +N+ + + L+ ++ A+
Sbjct: 69 IEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAES 128
Query: 111 KQM------LEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPAL 164
+ + LE+V L + NR ++ GQ++R+ +ARC++ Q IL+LDEP A +P
Sbjct: 129 EALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKE 188
Query: 165 RHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
E+ L+ ++ +E +T+L+I H+++ M I+ R V+ G + +G P+ + N
Sbjct: 189 TKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN 243
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux.
Length = 190
Score = 105 bits (265), Expect = 8e-24
Identities = 55/180 (30%), Positives = 105/180 (58%), Gaps = 10/180 (5%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ--NHTRSS--PSKRPLS 74
+F + E + +LG +GAGKSTLL + G P G++ ++G+ +++R ++ +
Sbjct: 12 NFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVG 71
Query: 75 ILFQ--ENNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQVKQMLEKVFLEDFFNRFPSQMS 131
++FQ ++ LF+ V Q++A G NL L + +V++ L V R +S
Sbjct: 72 LVFQDPDDQLFAA-DVDQDVAFGPL-NLGLSEAEVERRVREALTAVGASGLRERPTHCLS 129
Query: 132 GGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLE 191
GG+++RVA+A + + +LLLDEP A DPA R ++L +L+++ E +T+++ +H+++
Sbjct: 130 GGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE-GMTVVISTHDVD 188
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2.
Length = 520
Score = 105 bits (264), Expect = 8e-24
Identities = 65/216 (30%), Positives = 115/216 (53%), Gaps = 13/216 (6%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI-FLNGQ---NHTRSSP-----S 69
+V + E I+G SGAGK+TL ++AG PT G + G + T+ P +
Sbjct: 304 SLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRA 363
Query: 70 KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLED----FFNR 125
KR + IL QE +L+ H TV N+ I L + + V + F E+ ++
Sbjct: 364 KRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDK 423
Query: 126 FPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLM 185
+P ++S G+R RVALA+ LI++ I++LDEP DP + ++ + + +E + T ++
Sbjct: 424 YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFII 483
Query: 186 ISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGL 221
+SH+++ + + R ++ G+IV GDP+ ++ L
Sbjct: 484 VSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEEL 519
Score = 76.4 bits (188), Expect = 6e-15
Identities = 64/258 (24%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 12 DNLKMQFD---------FQVNKAERIVILGPSGAGKSTLLSLMAGFK--YPTRGSI---- 56
NL +FD F + + E + ILG SGAGKS L+ ++ G PT G I
Sbjct: 4 KNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHV 63
Query: 57 --------------------------------FLNGQNHTRSSPSKRPLSILFQEN-NLF 83
F N + R KR ++I+ Q L+
Sbjct: 64 ALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKR-IAIMLQRTFALY 122
Query: 84 SHLTVWQNI--ALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALA 141
TV N+ AL + A ++E V L +SGG++QRV LA
Sbjct: 123 GDDTVLDNVLEALEEIGYEGKEAVGRAV--DLIEMVQLSHRITHIARDLSGGEKQRVVLA 180
Query: 142 RCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFI 201
R L ++ + L DEP DP + L++ +++++ SH E ++ + I
Sbjct: 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI 240
Query: 202 VIAGGQIVYDGDPDRLMN 219
+ G+I +G PD ++
Sbjct: 241 WLENGEIKEEGTPDEVVA 258
>gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 105 bits (264), Expect = 9e-24
Identities = 67/239 (28%), Positives = 131/239 (54%), Gaps = 13/239 (5%)
Query: 2 IKLDHLIYCYDNLKMQFD---FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFL 58
I+++ L + Y + + + + +LGP+GAGKSTLL + G P RG + +
Sbjct: 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKV 64
Query: 59 NGQNHTRSSPS--KRPLSILFQE--NNLFSHLTVWQNIALGIAP-NLRLDHYQ-HAQVKQ 112
G+ + + + ++FQ+ + +FS TVW ++A G P N+ LD + +V++
Sbjct: 65 MGREVNAENEKWVRSKVGLVFQDPDDQVFS-STVWDDVAFG--PVNMGLDKDEVERRVEE 121
Query: 113 MLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLL 172
L+ V + DF ++ P +S GQ++RVA+A L +++LDEP A DP + ++ +L
Sbjct: 122 ALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEIL 181
Query: 173 KQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGLIPESTLLGIP 231
++ + T+++ +H+++ + + A + IV+ G+++ +GD L + I E L +P
Sbjct: 182 DRL-HNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGLRLP 239
>gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 104 bits (261), Expect = 2e-23
Identities = 62/211 (29%), Positives = 110/211 (52%), Gaps = 13/211 (6%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPL-----S 74
F + + + + ++G SG GKSTL L+ + PT G ++ GQ+ ++ P + L
Sbjct: 36 FTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQ 95
Query: 75 ILFQENNLFSHL----TVWQNIALGIAPNLRLDHYQH-AQVKQMLEKVFLE-DFFNRFPS 128
I+FQ N + L V Q + + N L + + M+ KV L + ++R+P
Sbjct: 96 IVFQ--NPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPH 153
Query: 129 QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISH 188
SGGQRQR+A+AR L+ +++ DEP + D +++ ++L L+ + E L+ + ISH
Sbjct: 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISH 213
Query: 189 NLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
+L IA +V+ G+ V G +++ N
Sbjct: 214 DLSVVEHIADEVMVMYLGRCVEKGTKEQIFN 244
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 104 bits (260), Expect = 2e-23
Identities = 61/203 (30%), Positives = 110/203 (54%), Gaps = 4/203 (1%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ--NHTRSSPSKRPLSILF 77
F + K + I+G +G+GKST+ LM G + G IF N Q ++ + I+F
Sbjct: 30 FNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVF 89
Query: 78 QE-NNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQ 136
Q +N F V ++A G+ + H +V + L++V + + + P+ +SGGQ+Q
Sbjct: 90 QNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQ 149
Query: 137 RVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQI 196
RVA+A L +++LDE ++ DP R +L L+++V E +T++ I+H+L ++M+
Sbjct: 150 RVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME- 208
Query: 197 ATRFIVIAGGQIVYDGDPDRLMN 219
A IV+ G + +G P + +
Sbjct: 209 ADHVIVMNKGTVYKEGTPTEIFD 231
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 103 bits (258), Expect = 5e-23
Identities = 66/204 (32%), Positives = 113/204 (55%), Gaps = 7/204 (3%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSS--PSKRPLSIL 76
+F + RI ++GP+GAGKSTL G PT GS+ + G+ T+ + ++ + ++
Sbjct: 24 NFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLV 83
Query: 77 FQ--ENNLFSHLTVWQNIALGIAPNLRLDHYQHA-QVKQMLEKVFLEDFFNRFPSQMSGG 133
FQ ++ +FS TV Q+IA G NL LD A +V L + LE+ +R P +SGG
Sbjct: 84 FQNPDDQIFSP-TVEQDIAFG-PINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGG 141
Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDS 193
+++RVA+A + + +L+LDEP A DP E++ L + + +T++ +H L+
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLV 201
Query: 194 MQIATRFIVIAGGQIVYDGDPDRL 217
++A V+ G+IV G + +
Sbjct: 202 PEMADYIYVMDKGRIVAYGTVEEI 225
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 103 bits (258), Expect = 5e-23
Identities = 66/204 (32%), Positives = 112/204 (54%), Gaps = 22/204 (10%)
Query: 21 QVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSIL---- 76
+ E + I+G SG+GKSTL++++ PT G+ + GQ+ ++ L+ L
Sbjct: 30 DIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQD--VATLDADALAQLRREH 87
Query: 77 ----FQENNLFSHLTVWQNIAL-----GIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP 127
FQ +L SHLT QN+ + G+ RL + +++L+++ LED P
Sbjct: 88 FGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRL-----LRAQELLQRLGLEDRVEYQP 142
Query: 128 SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMIS 187
SQ+SGGQ+QRV++AR L+ ++L DEP D E++ +L Q+ D R T+++++
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVT 201
Query: 188 HNLEDSMQIATRFIVIAGGQIVYD 211
H+ + + Q A R I I G+IV +
Sbjct: 202 HDPQVAAQ-AERVIEIRDGEIVRN 224
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 102 bits (255), Expect = 8e-23
Identities = 65/226 (28%), Positives = 126/226 (55%), Gaps = 9/226 (3%)
Query: 1 MIKLDHLIYCYD-----NLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGS 55
++++++L++ Y+ N F + K E + I+G +G+GKST L+ G G
Sbjct: 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK 63
Query: 56 IFLNGQNHTRSS--PSKRPLSILFQE-NNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQ 112
+ ++G+ T + +R + ++FQ +N F TV ++A G+ +V +
Sbjct: 64 VKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDE 123
Query: 113 MLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLL 172
L V + DF R P+++SGGQ+QRVA+A + + I++LDE ++ DP R EI+ ++
Sbjct: 124 ALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI 183
Query: 173 KQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLM 218
++ ++ QLT+L I+H+L+++ + R +V+ G+I+ + P L
Sbjct: 184 HEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELF 228
>gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 102 bits (255), Expect = 9e-23
Identities = 62/208 (29%), Positives = 113/208 (54%), Gaps = 19/208 (9%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-HTRSSPS-KRPLSIL 76
D V + + ++GP+GAGK+TLL + G PT G++ + G + S+ + R ++ +
Sbjct: 23 DLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV 82
Query: 77 FQENNLFSHLTVWQNIALGIAPNL----RLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSG 132
Q+ +L V Q + +G P+ A V++ +E+ + F +R + +SG
Sbjct: 83 PQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSG 142
Query: 133 GQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEI--LGLLKQVCDERQLTLLMISHNL 190
G+RQRV LAR L + P+LLLDEP A D + H++ L L++++ D+ + + I H+L
Sbjct: 143 GERQRVLLARALAQATPVLLLDEPTASLD--INHQVRTLELVRRLVDDGKTAVAAI-HDL 199
Query: 191 EDSMQIATRF----IVIAGGQIVYDGDP 214
+ +A R+ +++A G++ G P
Sbjct: 200 D----LAARYCDELVLLADGRVRAAGPP 223
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 102 bits (256), Expect = 9e-23
Identities = 60/197 (30%), Positives = 107/197 (54%), Gaps = 7/197 (3%)
Query: 28 IVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK--RPLSILFQENNLFSH 85
++GP+G GKSTLL A P G++FL + + S + R L++L Q +
Sbjct: 31 TALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEG 90
Query: 86 LTVWQNIALGIAPNL----RLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALA 141
+TV + +A G +P L RL +A+V Q +E+ + +R + +SGGQRQR LA
Sbjct: 91 ITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLA 150
Query: 142 RCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFI 201
L + P++LLDEP D + E++ L++++ + + T++ + H+L + + +
Sbjct: 151 MVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGK-TVVTVLHDLNQASRYCDHLV 209
Query: 202 VIAGGQIVYDGDPDRLM 218
V+A G ++ G P+ +M
Sbjct: 210 VLANGHVMAQGTPEEVM 226
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 101 bits (254), Expect = 1e-22
Identities = 68/225 (30%), Positives = 121/225 (53%), Gaps = 14/225 (6%)
Query: 1 MIKLDHLIYCYDN----LKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI 56
++K++ L Y Y + LK + + K E ILG +GAGKSTL + G P+ G I
Sbjct: 5 ILKVEELNYNYSDGTHALK-GININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 57 FLNGQNHTRSSPS----KRPLSILFQ--ENNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQ 109
+G+ S + + ++FQ +N LFS +V+Q+++ G A NL+L + +
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS-ASVYQDVSFG-AVNLKLPEDEVRKR 121
Query: 110 VKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEIL 169
V L++ +E ++ +S GQ++RVA+A L+ + +L+LDEP A DP EI+
Sbjct: 122 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181
Query: 170 GLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDP 214
LL ++ E LT+++ +H+++ V+ G+++ G+P
Sbjct: 182 KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 226
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 101 bits (253), Expect = 1e-22
Identities = 64/198 (32%), Positives = 105/198 (53%), Gaps = 9/198 (4%)
Query: 1 MIKLDHLIYCYDNLKMQF---DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIF 57
MI+ +H+ Y + F + E + G SGAGKSTLL L+ G + P+ G I+
Sbjct: 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60
Query: 58 LNGQNHTRSSPS-----KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQ 112
+G + TR +R + ++FQ+++L TV+ N+A+ + +V
Sbjct: 61 FSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSA 120
Query: 113 MLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLL 172
L+KV L D FP Q+SGG++QRV +AR ++ + +LL DEP D AL IL L
Sbjct: 121 ALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLF 180
Query: 173 KQVCDERQLTLLMISHNL 190
++ + +T+LM +H++
Sbjct: 181 EEF-NRVGVTVLMATHDI 197
>gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 101 bits (253), Expect = 2e-22
Identities = 63/183 (34%), Positives = 101/183 (55%), Gaps = 8/183 (4%)
Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSS--PSKRPLSILFQENNLFSHLT 87
I+GPSGAGKSTL+ L+ PT GSI ++G + +R + ++FQ+ +LF T
Sbjct: 34 IVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEG-T 92
Query: 88 VWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLE-DFFNRFPSQMSGGQRQRVALARCLIR 146
V NI G P L+ + ++ V+ L V L ++ R +SGG+ QRV++AR L
Sbjct: 93 VKDNIEYG--PMLKGE--KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLAN 148
Query: 147 QKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGG 206
+LLLDEP + DP I L+ ++ ++ LT++ I+HN+E + +I + G
Sbjct: 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKG 208
Query: 207 QIV 209
+V
Sbjct: 209 ILV 211
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown.
Length = 223
Score = 101 bits (253), Expect = 2e-22
Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 13/207 (6%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQE 79
+K E + +LGP+GAGK+TLL + G P +G++ + G + R + + Q
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGAS---PGKGWRHIGYVPQR 57
Query: 80 NNLFS---HLTVWQNIALG----IAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSG 132
+ F+ ++V + G I R A V+ L +V L + +R ++SG
Sbjct: 58 HE-FAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSG 116
Query: 133 GQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLED 192
GQRQRV +AR L + +LLLDEPF D + + L ++ +LM +H+L
Sbjct: 117 GQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA-GTAILMTTHDLAQ 175
Query: 193 SMQIATRFIVIAGGQIVYDGDPDRLMN 219
+M R +V+ G+++ DG P +L +
Sbjct: 176 AMATCDR-VVLLNGRVIADGTPQQLQD 201
>gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 101 bits (252), Expect = 2e-22
Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 30/252 (11%)
Query: 3 KLDHLIYCYDNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFL---- 58
K ++ + +N+ + F+ NK I+G SG+GKSTL++ G G+I +
Sbjct: 34 KQENELVALNNI--SYTFEKNKI--YFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIY 89
Query: 59 ------NGQNHTRSSPSK--------RPLSILFQ--ENNLFSHLTVWQNIALGIAPNLRL 102
N + T K R +S++FQ E LF T+ ++I G L +
Sbjct: 90 IGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFG-PVALGV 147
Query: 103 DHYQHAQ-VKQMLEKVFL-EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVF 160
+ + K L K+ L + + R P +SGGQ++RVA+A L Q IL+ DEP A
Sbjct: 148 KKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGL 207
Query: 161 DPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDP-DRLMN 219
DP HE++ L+ + T+ +I+H +E +++A IV+ G+I+ G P + +
Sbjct: 208 DPKGEHEMMQLILDAKANNK-TVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTD 266
Query: 220 GLIPESTLLGIP 231
I ST + +P
Sbjct: 267 QHIINSTSIQVP 278
>gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification.
Length = 236
Score = 101 bits (253), Expect = 2e-22
Identities = 64/207 (30%), Positives = 109/207 (52%), Gaps = 14/207 (6%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK--RPLSIL 76
F V E + +LGP+GAGKSTL SL+ G I + G + R +P L ++
Sbjct: 21 SFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHD-LRRAPRAALARLGVV 79
Query: 77 FQENNLFSHLTVWQNI----AL-GIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMS 131
FQ+ L L+V QN+ AL G++ ++ +L ++ L + + +++
Sbjct: 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAE-----ARERIAALLARLGLAERADDKVRELN 134
Query: 132 GGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLE 191
GG R+RV +AR L+ + +LLLDEP DPA R I+ ++ +C ++ L++L +H L
Sbjct: 135 GGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATH-LV 193
Query: 192 DSMQIATRFIVIAGGQIVYDGDPDRLM 218
D ++ R +V+ G+++ DG L
Sbjct: 194 DEIEADDRLVVLHRGRVLADGAAAELR 220
>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 694
Score = 100 bits (252), Expect = 2e-22
Identities = 66/206 (32%), Positives = 106/206 (51%), Gaps = 23/206 (11%)
Query: 26 ERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLSILFQENNLF 83
E I I+GPSG+GKSTL L+ P G + ++G + + P+ +R + ++ QEN LF
Sbjct: 484 EFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLF 543
Query: 84 SHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP-----------SQMSG 132
S ++ NIAL P +H HA + DF + P + +SG
Sbjct: 544 SR-SIRDNIALC-NPGAPFEHVIHAA-----KLAGAHDFISELPQGYNTEVGEKGANLSG 596
Query: 133 GQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLED 192
GQRQR+A+AR L+ IL+ DE + D I+ ++++C R T+++I+H L
Sbjct: 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGR--TVIIIAHRL-S 653
Query: 193 SMQIATRFIVIAGGQIVYDGDPDRLM 218
+++ R IV+ GQI G + L+
Sbjct: 654 TVRACDRIIVLEKGQIAESGRHEELL 679
>gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 242
Score = 100 bits (252), Expect = 2e-22
Identities = 62/229 (27%), Positives = 114/229 (49%), Gaps = 24/229 (10%)
Query: 12 DNLKMQFD---------FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN 62
+ L + FD V+ E VI+GP+GAGK+T++ ++ G P GS+ G +
Sbjct: 6 EGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTD 65
Query: 63 HTRSSPSKRP-LSI--LFQENNLFSHLTVWQN--IALGIAPNL------RLDHYQHAQVK 111
T + I FQ+ +F +LTV++N +AL ++ RL + +++
Sbjct: 66 LTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIE 125
Query: 112 QMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKP-ILLLDEPFAVFDPALRHEILG 170
++LE + L D +R +S GQ+Q + + L+ Q P +LLLDEP A +
Sbjct: 126 EVLETIGLADEADRLAGLLSHGQKQWLEIGMLLM-QDPKLLLLDEPVAGMTDEETEKTAE 184
Query: 171 LLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
LLK + + +++++ H++E IA + V+ G ++ +G D++
Sbjct: 185 LLKSLAGKH--SVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 100 bits (251), Expect = 3e-22
Identities = 67/214 (31%), Positives = 115/214 (53%), Gaps = 18/214 (8%)
Query: 31 LGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK------RPLSILFQ--ENNL 82
+G +G+GKST++ L+ G PT+GS+ ++ T +S +K + + ++FQ E+ L
Sbjct: 39 IGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQL 98
Query: 83 FSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFL----EDFFNRFPSQMSGGQRQRV 138
F TV +++A G N + Q EK+ L E F + P ++SGGQ +RV
Sbjct: 99 FEE-TVLKDVAFG-PQNFGVS--QEEAEALAREKLALVGISESLFEKNPFELSGGQMRRV 154
Query: 139 ALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIAT 198
A+A L + IL+LDEP A DP R E++ L K++ + +T+++++H ++D A
Sbjct: 155 AIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL-HQSGMTIVLVTHLMDDVANYAD 213
Query: 199 RFIVIAGGQIVYDGDPDRLMNGL-IPESTLLGIP 231
V+ G++V G P + + E LG+P
Sbjct: 214 FVYVLEKGKLVLSGKPKDIFQDVDFLEEKQLGVP 247
>gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 100 bits (252), Expect = 3e-22
Identities = 64/211 (30%), Positives = 110/211 (52%), Gaps = 12/211 (5%)
Query: 18 FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK--RPLSI 75
+V E + ++GP+GAGKSTLL+ MAG P GSI GQ S ++ R +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQR 135
L Q+ + V+Q + L R + A + ++ E + L+D R +Q+SGG+
Sbjct: 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASA-LNEVAEALGLDDKLGRSVNQLSGGEW 132
Query: 136 QRVALARCLIRQKP-------ILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISH 188
QRV LA +++ P +LLLDEP D A + + LL ++C ++ + ++M SH
Sbjct: 133 QRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELC-QQGIAVVMSSH 191
Query: 189 NLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
+L +++ A R ++ G+++ G D ++
Sbjct: 192 DLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc.
Length = 708
Score = 99.8 bits (249), Expect = 5e-22
Identities = 65/234 (27%), Positives = 112/234 (47%), Gaps = 26/234 (11%)
Query: 2 IKLDHLIYCY---DNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFL 58
I ++ + Y Y N+ + + I+G SG+GKSTL L+ GF G I L
Sbjct: 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533
Query: 59 NGQNHTRSSPS--KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEK 116
NG + ++ ++ L QE +FS ++ +N+ LG N+ D ++ E
Sbjct: 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKENVSQD-----EIWAACEI 587
Query: 117 VFLEDFFNRFP-----------SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALR 165
++D P S +SGGQ+QR+ALAR L+ +L+LDE + D
Sbjct: 588 AEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE 647
Query: 166 HEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
+I+ L + D+ T++ ++H L + Q + + IV+ G+I+ G D L++
Sbjct: 648 KKIVNNLLNLQDK---TIIFVAHRLSVAKQ-SDKIIVLDHGKIIEQGSHDELLD 697
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 99.3 bits (247), Expect = 8e-22
Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 25/223 (11%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLL----SLMAGFKYPTRGSIFLNGQNHTRSS------- 67
D ++ E + +LGPSG+GKSTLL L+ G K I L G+ R
Sbjct: 24 DLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSA-GSHIELLGRTVQREGRLARDIR 82
Query: 68 PSKRPLSILFQENNLFSHLTVWQNI---ALGIAPNLR-----LDHYQHAQVKQMLEKVFL 119
S+ +FQ+ NL + L+V +N+ ALG P R Q + Q L +V +
Sbjct: 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGM 142
Query: 120 EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDER 179
F ++ S +SGGQ+QRVA+AR L++Q ++L DEP A DP ++ L+ +
Sbjct: 143 VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND 202
Query: 180 QLTLLMISHNLEDSMQIATRFIVIAGGQIVYDG-----DPDRL 217
+T+++ H ++ +++ R + + G + YDG D +R
Sbjct: 203 GITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNERF 245
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
Length = 265
Score = 98.7 bits (246), Expect = 1e-21
Identities = 60/200 (30%), Positives = 103/200 (51%), Gaps = 9/200 (4%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS-----KRPL 73
+ + E + +LG SG GKSTL L+ G + P +G++ GQ+ + +R +
Sbjct: 31 SLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDV 90
Query: 74 SILFQE--NNLFSHLTVWQNIALGIAPNLRLDHY-QHAQVKQMLEKVFLE-DFFNRFPSQ 129
++FQ+ + + +TV Q I + LD Q A++ ++L+ V L + ++ P Q
Sbjct: 91 QLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQ 150
Query: 130 MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189
+SGGQ QR+ +AR L + +++LDE + D L+ IL LL+++ L I+H+
Sbjct: 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD 210
Query: 190 LEDSMQIATRFIVIAGGQIV 209
L R V+ GQIV
Sbjct: 211 LRLVQSFCQRVAVMDKGQIV 230
>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal propeptide
cleavage domain, and an HlyD homolog (TIGR03794). In a
number of genomes, a conserved propeptide sequence with
a classic Gly-Gly motif.
Length = 686
Score = 98.5 bits (246), Expect = 1e-21
Identities = 75/235 (31%), Positives = 114/235 (48%), Gaps = 30/235 (12%)
Query: 2 IKLDHLIYCYDNLKMQ-FD---FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIF 57
I++D + + Y D Q+ E + I+GPSG+GKSTLL L+ GF+ P GS+F
Sbjct: 452 IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511
Query: 58 LNGQN--HTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLE 115
+GQ+ +R L ++ Q L S ++++NIA G AP L LD A
Sbjct: 512 YDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIA-GGAP-LTLDEAWEA-----AR 563
Query: 116 KVFLEDFFNRFPSQM-----------SGGQRQRVALARCLIRQKPILLLDEPFAVFDPAL 164
L + P M SGGQRQR+ +AR L+R+ ILL DE + AL
Sbjct: 564 MAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATS----AL 619
Query: 165 RHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
+ ++ + + ++T ++I+H L A R V+ G++V G D LM
Sbjct: 620 DNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDELMA 673
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 97.5 bits (243), Expect = 3e-21
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 3/204 (1%)
Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRP-LSI 75
+ F+ K + LGP+GAGKST + ++ G+ P GS+ + G++ ++ + +
Sbjct: 20 EVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY 79
Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQR 135
L + N L+ + V + + +V++M+E V L ++ Q+S G R
Sbjct: 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYR 139
Query: 136 QRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQ 195
QRV LA+ LI +L+LDEP DP EI ++K + ++ T+++ +H +++
Sbjct: 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDK--TIILSTHIMQEVEA 197
Query: 196 IATRFIVIAGGQIVYDGDPDRLMN 219
I R I+I G+IV D D L
Sbjct: 198 ICDRVIIINKGKIVADKKLDELSA 221
>gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
Length = 711
Score = 97.5 bits (243), Expect = 3e-21
Identities = 67/215 (31%), Positives = 110/215 (51%), Gaps = 31/215 (14%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ-----NHTRSSPSKRPLS 74
F ++ E + ++GPSG+GKST+ +L+ PT G + L+G +H R ++
Sbjct: 502 FTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYL---HRQVA 558
Query: 75 ILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP------- 127
++ QE LFS +V +NIA G L ++ + DF FP
Sbjct: 559 LVGQEPVLFSG-SVRENIAYG------LTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEV 611
Query: 128 ----SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183
SQ+SGGQ+QR+A+AR L+R+ +L+LDE + AL E LL++ T+
Sbjct: 612 GEKGSQLSGGQKQRIAIARALVRKPRVLILDEATS----ALDAECEQLLQESRSRASRTV 667
Query: 184 LMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLM 218
L+I+H L +++ A + +V+ G +V G +LM
Sbjct: 668 LLIAHRLS-TVERADQILVLKKGSVVEMGTHKQLM 701
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 97.0 bits (241), Expect = 3e-21
Identities = 75/242 (30%), Positives = 129/242 (53%), Gaps = 15/242 (6%)
Query: 1 MIKLDHLIYCYDN---LKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIF 57
MI+L+++ Y Y + + + K E I I+G +G+GKSTL + G P +G +
Sbjct: 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 58 LNGQNHTRSSPSKRP-----LSILFQE-NNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQV 110
++G + SK + I+FQ F TV +++A G NL L + +V
Sbjct: 61 VSGID--TGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG-PENLCLPPIEIRKRV 117
Query: 111 KQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILG 170
+ L ++ LE + +R P +SGGQ Q VALA L + L+ DE ++ DP +L
Sbjct: 118 DRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLE 177
Query: 171 LLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGLIPESTLLGI 230
+K++ E+ T++ I+HNLE+ + A R IV+ G+IV +G+P+ +++ + ++ L
Sbjct: 178 RIKKL-HEKGKTIVYITHNLEE-LHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTP 235
Query: 231 PS 232
PS
Sbjct: 236 PS 237
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 94.8 bits (236), Expect = 2e-20
Identities = 60/230 (26%), Positives = 111/230 (48%), Gaps = 41/230 (17%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI---FLNGQNHTRSSPSK----- 70
++N+ E I I+G +G+GK+T + + P G+I F + +N ++ +
Sbjct: 27 SVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEK 86
Query: 71 ------------------RPLSILFQ--ENNLFSHLTVWQNIA-----LGIAPNLRLDHY 105
R + ++FQ E LF T+ ++I +G++ +
Sbjct: 87 LVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ-TIEKDIIFGPVSMGVSKE---EAK 142
Query: 106 QHAQVKQMLEKVFL-EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPAL 164
+ A + +E V L E + R P ++SGGQ++RVALA L + L+ DEP A DP
Sbjct: 143 KRA--AKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQG 200
Query: 165 RHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDP 214
EIL + + + + T+++++H+L++ ++ R I G+I+ DGD
Sbjct: 201 VKEILEIFDNLNKQGK-TIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDT 249
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 94.5 bits (235), Expect = 2e-20
Identities = 60/201 (29%), Positives = 105/201 (52%), Gaps = 14/201 (6%)
Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK--RPL----SILFQ--ENN 81
I+G +G+GKSTL+ + PT G++ ++ T + K RP+ ++FQ E+
Sbjct: 38 IVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQ 97
Query: 82 LFSHLTVWQNIALGIAP---NLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRV 138
LF TV + I G P + LD ++ + +++ F D ++ P QMSGGQ +++
Sbjct: 98 LFED-TVEREIIFG--PKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKI 154
Query: 139 ALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIAT 198
A+ L I++LDEP A DP + +++ LLK + + T++++SH++ + + A
Sbjct: 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYAD 214
Query: 199 RFIVIAGGQIVYDGDPDRLMN 219
IV+ G IV P L
Sbjct: 215 EVIVMKEGSIVSQTSPKELFK 235
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 94.1 bits (234), Expect = 2e-20
Identities = 60/229 (26%), Positives = 123/229 (53%), Gaps = 13/229 (5%)
Query: 2 IKLDHLIYCYDNLKM----QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYP---TRG 54
++ H+ + Y + K F + + ++G +G+GKST+ L+ G P
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65
Query: 55 SIFLNGQNHTRSS--PSKRPLSILFQE-NNLFSHLTVWQNIALGIAPNLRLDHYQHAQ-V 110
I ++G T + + + I+FQ +N F TV ++A G+ N + + + V
Sbjct: 66 KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLE-NRAVPRPEMIKIV 124
Query: 111 KQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILG 170
+ +L V + D+ + P+ +SGGQ+QRVA+A L + I++LDE ++ DPA + +IL
Sbjct: 125 RDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK 184
Query: 171 LLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
L++++ + LT++ I+H+++++ A + +V+ G+++ G P + +
Sbjct: 185 LIRKLKKKNNLTVISITHDIDEANM-ADQVLVLDDGKLLAQGSPVEIFS 232
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 94.1 bits (234), Expect = 3e-20
Identities = 64/190 (33%), Positives = 99/190 (52%), Gaps = 18/190 (9%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-HTRSSPSK-----RPL 73
F + + E + I+G SG+GKSTLL L+ G PT G + NGQ SS +K + L
Sbjct: 30 FSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKL 89
Query: 74 SILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQ----MLEKVFLEDFFNRFPSQ 129
++Q ++L T +N+A+ L + + A++ ML V LE N PS+
Sbjct: 90 GFIYQFHHLLPDFTALENVAM----PLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSE 145
Query: 130 MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189
+SGG+RQRVA+AR L+ ++L DEP D I LL ++ + L+++H+
Sbjct: 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205
Query: 190 LEDSMQIATR 199
L Q+A R
Sbjct: 206 L----QLAKR 211
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 94.0 bits (233), Expect = 3e-20
Identities = 70/249 (28%), Positives = 126/249 (50%), Gaps = 21/249 (8%)
Query: 1 MIKLDHLIYCY-------DNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTR 53
MIK + + Y Y D +V K ++G +G+GKSTLL + G PT
Sbjct: 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 54 GSIFLNGQNHTRSS------PSKRPLSILFQ--ENNLFSHLTVWQNIALGIAPNLRLDHY 105
G + + + +S P ++ + ++FQ E+ LF TV +++A G N +
Sbjct: 61 GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEE-TVLKDVAFG-PQNFGIPKE 118
Query: 106 QHAQVK-QMLEKVFL-EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPA 163
+ ++ + LE V L ++F+ + P ++SGGQ +RVA+A L + +L+LDEP A DP
Sbjct: 119 KAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178
Query: 164 LRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGL-I 222
R E++ L + + Q T+++++H ++D A ++ G I+ G P + +
Sbjct: 179 ARIEMMQLFESIHQSGQ-TVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDF 237
Query: 223 PESTLLGIP 231
++ LG+P
Sbjct: 238 LKAHELGVP 246
>gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 93.4 bits (232), Expect = 5e-20
Identities = 59/207 (28%), Positives = 109/207 (52%), Gaps = 11/207 (5%)
Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK------ 70
F++ + + ++G +G+GKSTL+ P+ G+I + G + T + +K
Sbjct: 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLR 84
Query: 71 RPLSILFQ--ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFL-EDFFNRFP 127
+ +S++FQ E LF + TV +++ G + + + L+KV L ED ++ P
Sbjct: 85 KKVSLVFQFPEAQLFEN-TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSP 143
Query: 128 SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMIS 187
++SGGQ +RVA+A + + IL LDEP A DP R E++ L K T+++++
Sbjct: 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGH-TVILVT 202
Query: 188 HNLEDSMQIATRFIVIAGGQIVYDGDP 214
HN++D + A +V+ G+++ P
Sbjct: 203 HNMDDVAEYADDVLVLEHGKLIKHASP 229
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 93.0 bits (231), Expect = 5e-20
Identities = 56/207 (27%), Positives = 107/207 (51%), Gaps = 11/207 (5%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN------HTRSSPSKRPL 73
VN E + +LGP+GAGK+T ++ G G+I ++ ++ H R+ +R +
Sbjct: 24 LTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA---RRGI 80
Query: 74 SILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHA-QVKQMLEKVFLEDFFNRFPSQMSG 132
L QE ++F L+V+ N+ + L Q + +++E+ +E + +SG
Sbjct: 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSG 140
Query: 133 GQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLED 192
G+R+RV +AR L +LLDEPFA DP +I +++ + D L +L+ HN+ +
Sbjct: 141 GERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVRE 199
Query: 193 SMQIATRFIVIAGGQIVYDGDPDRLMN 219
++ + R +++ G ++ G P ++
Sbjct: 200 TLAVCERAYIVSQGHLIAHGTPTEILQ 226
>gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 93.2 bits (232), Expect = 5e-20
Identities = 64/213 (30%), Positives = 108/213 (50%), Gaps = 16/213 (7%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS-----KRPL 73
+ E + +LG SG GKSTL L+ G + P++G++ G+ + + + +R +
Sbjct: 32 SLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDI 91
Query: 74 SILFQENNLFSHLTVWQNIALGIAPNLR----LDHY-QHAQVKQMLEKVFLED-FFNRFP 127
++FQ++ S + + + I LR LD + A+ +ML V L+D ++ P
Sbjct: 92 QMVFQDS--ISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRP 149
Query: 128 SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMIS 187
Q+SGGQ QRV LAR L + +L+LDE + D L+ ++ LLK++ + L I+
Sbjct: 150 PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFIT 209
Query: 188 HNLEDSMQIATRFIVIAGGQIVYD---GDPDRL 217
H+L + R +V+ GQIV GD
Sbjct: 210 HDLRLVERFCQRVMVMDNGQIVETQPVGDKLTF 242
>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters.
Length = 247
Score = 93.1 bits (232), Expect = 5e-20
Identities = 59/209 (28%), Positives = 108/209 (51%), Gaps = 29/209 (13%)
Query: 29 VILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHTRSSPS----KRPLSILF 77
++GPSG GKSTLL L+ G + G + +GQ+ +R + ++F
Sbjct: 31 ALIGPSGCGKSTLLRSLNRMNDLVPGVRI--EGKVLFDGQDIYDKKIDVVELRRRVGMVF 88
Query: 78 QENNLFSHLTVWQNIALG-----IAPNLRLDHYQHAQVKQMLEKVFL----EDFFNRFPS 128
Q+ N F ++++ NIA G I LD V++ L+K L +D +
Sbjct: 89 QKPNPFP-MSIYDNIAYGPRLHGIKDKKELD----EIVEESLKKAALWDEVKDRLHDSAL 143
Query: 129 QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISH 188
+SGGQ+QR+ +AR L + +LLLDEP + DP +I L++++ + T+++++H
Sbjct: 144 GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTH 201
Query: 189 NLEDSMQIATRFIVIAGGQIVYDGDPDRL 217
N++ + +I+ R G++V G +++
Sbjct: 202 NMQQAARISDRTAFFYDGELVEYGPTEQI 230
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 92.9 bits (231), Expect = 6e-20
Identities = 60/208 (28%), Positives = 107/208 (51%), Gaps = 7/208 (3%)
Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ--NHTRSSPSKRPLSILFQENNLFSHLT 87
++G +G+GKSTLL ++ + P+ G I L+ Q S R ++ L Q+ +T
Sbjct: 42 LIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101
Query: 88 VWQNIALGIAPNL----RLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARC 143
V + +A+G P R +V++ + V L+ +R +SGG+RQR +A
Sbjct: 102 VRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAML 161
Query: 144 LIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVI 203
+ + LLLDEP + D A + ++L L+ ++ ER LT++ + H++ + + + +
Sbjct: 162 VAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVAL 221
Query: 204 AGGQIVYDGDPDRLMNGLIPESTLLGIP 231
GG+++ G P LM G E + GIP
Sbjct: 222 RGGEMIAQGTPAELMRGETLEQ-IYGIP 248
>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c.
Length = 198
Score = 92.8 bits (231), Expect = 7e-20
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 8/174 (4%)
Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS-KRPLSI 75
F +N E + + GP+G GK+TLL ++AG P G + NG R +
Sbjct: 18 GLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILY 77
Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDH-YQHAQVKQMLEKVFLEDFFNRFPSQMSGGQ 134
L L L+ +N+ H ++ L V L F + +Q+S GQ
Sbjct: 78 LGHLPGLKPELSALENLHF-----WAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQ 132
Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISH 188
++R+ALAR + + P+ +LDEP D A + GLL+ R +L+ +H
Sbjct: 133 QRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHL-ARGGIVLLTTH 185
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 91.9 bits (228), Expect = 1e-19
Identities = 65/223 (29%), Positives = 119/223 (53%), Gaps = 26/223 (11%)
Query: 13 NLKMQF---------DFQVNKAERIVILGPSGAGKSTLLSLMAGF--KYP---TRGSIFL 58
+LK+ F + ++ ++GPSG+GKSTLL + YP G ++L
Sbjct: 8 DLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYL 67
Query: 59 NGQNHTRSSPS--KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQ---HAQVKQM 113
+GQ+ + +R + ++FQ N +L++++N+ALG+ N RL + +V+
Sbjct: 68 DGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLN-RLVKSKKELQERVRWA 126
Query: 114 LEKVFL-EDFFNRFPS---QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEIL 169
LEK L ++ +R + ++SGGQ+QR+ +AR L Q +LL DEP A DP +I
Sbjct: 127 LEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIE 186
Query: 170 GLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDG 212
L ++ ++ +T+++++H + + +I+ + GQIV G
Sbjct: 187 SLFLEL--KKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This model does not recognize the highly
divergent NodI from Azorhizobium caulinodans.
Length = 303
Score = 91.5 bits (227), Expect = 2e-19
Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 4/205 (1%)
Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI-FLNGQNHTRSSPSKRPLSI 75
F + + E +LGP+GAGKST+ ++ G P RG I L +R+ ++ + +
Sbjct: 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81
Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQVKQMLEKVFLEDFFNRFPSQMSGGQ 134
+ Q +NL TV +N+ L + + A + +LE LE + + +SGG
Sbjct: 82 VPQFDNLDPEFTVRENL-LVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGM 140
Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSM 194
++R+ LAR LI +L+LDEP DP RH I L+ + R T+L+ +H +E++
Sbjct: 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL-ARGKTILLTTHFMEEAE 199
Query: 195 QIATRFIVIAGGQIVYDGDPDRLMN 219
++ R V+ G+ + +G P L++
Sbjct: 200 RLCDRLCVLESGRKIAEGRPHALID 224
>gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 91.4 bits (227), Expect = 2e-19
Identities = 65/206 (31%), Positives = 110/206 (53%), Gaps = 4/206 (1%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-HTRSSPSKRPLSILF 77
F V + E +LGP+GAGK+T L ++ G +P GSI L G+ +R+ +++ + ++
Sbjct: 27 SFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVP 86
Query: 78 QENNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQVKQMLEKVFLEDFFNRFPSQMSGGQRQ 136
Q +NL TV +N+ L L A V +LE LE+ + ++SGG ++
Sbjct: 87 QFDNLDPDFTVRENL-LVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKR 145
Query: 137 RVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQI 196
R+ LAR L+ +L+LDEP DP RH + L+ + R T+L+ +H +E++ ++
Sbjct: 146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL-ARGKTILLTTHFMEEAERL 204
Query: 197 ATRFIVIAGGQIVYDGDPDRLMNGLI 222
R VI G+ + +G P L+ I
Sbjct: 205 CDRLCVIEEGRKIAEGAPHALIESEI 230
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 90.3 bits (224), Expect = 4e-19
Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 17/206 (8%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLS-----LMAGFKYPTRGSIFLNGQN--HTRSSP--S 69
D ++ + ++GPSG GKSTLL L + G + L G+N P
Sbjct: 24 DLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEV 83
Query: 70 KRPLSILFQENNLFSHLTVWQNIALGIAPN--LRLDHYQHAQVKQMLEKVFL----EDFF 123
+R + ++FQ N F HLT++ N+A+G+ N ++ +V+ L+K L +D
Sbjct: 84 RREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRL 143
Query: 124 NRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183
N +PS +SGGQRQR+ +AR L + ILL+DEP A DP +I LL ++ E T+
Sbjct: 144 NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE--YTI 201
Query: 184 LMISHNLEDSMQIATRFIVIAGGQIV 209
++++H+ + +++ + G+++
Sbjct: 202 VLVTHSPAQAARVSDYVAFLYLGKLI 227
>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 90.3 bits (224), Expect = 4e-19
Identities = 63/208 (30%), Positives = 104/208 (50%), Gaps = 4/208 (1%)
Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI-FLNGQNHTRSSPSKRPLSI 75
F V E +LGP+GAGKST+ ++ G P G I L R+ ++ + +
Sbjct: 59 GLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGV 118
Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQVKQMLEKVFLEDFFNRFPSQMSGGQ 134
+ Q +NL TV +N+ L + + A + +LE LE + S +SGG
Sbjct: 119 VPQFDNLDLEFTVRENL-LVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGM 177
Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSM 194
++R+ LAR LI +L+LDEP DP RH I L+ + R T+L+ +H +E++
Sbjct: 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL-ARGKTILLTTHFMEEAE 236
Query: 195 QIATRFIVIAGGQIVYDGDPDRLMNGLI 222
++ R V+ G+ + +G P L++ I
Sbjct: 237 RLCDRLCVLEAGRKIAEGRPHALIDEHI 264
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 90.0 bits (223), Expect = 4e-19
Identities = 57/195 (29%), Positives = 99/195 (50%), Gaps = 6/195 (3%)
Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN--HTRSSPSKRPLSILFQENNLFSHLT 87
I+GP+G GKSTLL ++ P G ++L+G++ H S R + +L Q +T
Sbjct: 38 IIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDIT 97
Query: 88 VWQNIALGIAPN----LRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARC 143
V + +A G P+ R V + ++ + ++ +SGGQRQR +A
Sbjct: 98 VQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMV 157
Query: 144 LIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVI 203
L ++ I+LLDEP D + + ++L LL ++ E+ TL + H+L + + A+ I +
Sbjct: 158 LAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIAL 217
Query: 204 AGGQIVYDGDPDRLM 218
G+IV G P ++
Sbjct: 218 REGKIVAQGAPKEIV 232
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 87.9 bits (218), Expect = 2e-18
Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 10/184 (5%)
Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRP------LSI 75
V + E I ++G SG+GKSTLL+++AG + G + L GQ + R +
Sbjct: 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGF 92
Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQR 135
+FQ L L +N+ L K +LE++ L + P+Q+SGG++
Sbjct: 93 VFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQ 152
Query: 136 QRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQ 195
QRVALAR + +L DEP D +I LL + E TL++++H+L Q
Sbjct: 153 QRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL----Q 208
Query: 196 IATR 199
+A R
Sbjct: 209 LAAR 212
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 88.0 bits (218), Expect = 2e-18
Identities = 60/223 (26%), Positives = 114/223 (51%), Gaps = 19/223 (8%)
Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK---RPL 73
+ +N+ E + ++G +GAGK+TLL + G T G I +G++ T +K +
Sbjct: 23 EVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82
Query: 74 SILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQ---- 129
+I+ + +FS +TV +N+A+G + Q ++ ++ V+ + F R +
Sbjct: 83 AIVPEGRRVFSRMTVEENLAMG---GFFAERDQF---QERIKWVY--ELFPRLHERRIQR 134
Query: 130 ---MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMI 186
MSGG++Q +A+ R L+ Q +LLLDEP P + +I ++Q+ E+ +T+ ++
Sbjct: 135 AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL-REQGMTIFLV 193
Query: 187 SHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGLIPESTLLG 229
N ++++A R V+ G +V + D L+ S LG
Sbjct: 194 EQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSAYLG 236
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 87.5 bits (217), Expect = 3e-18
Identities = 57/183 (31%), Positives = 95/183 (51%), Gaps = 7/183 (3%)
Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHLTVW 89
+LGP+GAGKSTLL ++ G PT G I +G TR K + L + L+ +LT
Sbjct: 31 LLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHK--IGSLIESPPLYENLTAR 88
Query: 90 QNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKP 149
+N+ + L L +++ ++L V L + + Q S G +QR+ +A L+
Sbjct: 89 ENLKV-HTTLLGLP---DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPK 144
Query: 150 ILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIV 209
+L+LDEP DP E+ L++ E+ +T+++ SH L + Q+A +I+ G +
Sbjct: 145 LLILDEPTNGLDPIGIQELRELIRSF-PEQGITVILSSHILSEVQQLADHIGIISEGVLG 203
Query: 210 YDG 212
Y G
Sbjct: 204 YQG 206
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous.
Length = 230
Score = 86.7 bits (215), Expect = 5e-18
Identities = 58/216 (26%), Positives = 96/216 (44%), Gaps = 21/216 (9%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYP----TRGSIFLNGQNHTRSSPSKRPLS 74
+ + + E + ++G SG+GKS + G P T G I L+G+ S R ++
Sbjct: 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIA 65
Query: 75 ILFQE-----NNLFS---HLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLED---FF 123
+ Q N LF+ H ++ R A + + LE V L D
Sbjct: 66 TIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQAR------ALILEALEAVGLPDPEEVL 119
Query: 124 NRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183
++P Q+SGG QRV +A L+ + P L+ DEP D + +L LL+++ +
Sbjct: 120 KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGI 179
Query: 184 LMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
L+I+H+L +IA V+ G+IV G +
Sbjct: 180 LLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 86.2 bits (214), Expect = 6e-18
Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 28/233 (12%)
Query: 2 IKLDHLIYCYDNLKMQFD---FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFL 58
++ D + + YDN + + F+ + + I+GP+GAGKSTL++L+ P G I +
Sbjct: 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILI 394
Query: 59 NGQN---HTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLE 115
+G + TR+S +R ++++FQ+ LF+ ++ NI +G R D +++ E
Sbjct: 395 DGTDIRTVTRAS-LRRNIAVVFQDAGLFNR-SIEDNIRVG-----RPDA-TDEEMRAAAE 446
Query: 116 KVFLEDFFNRFP-----------SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPAL 164
+ DF R P Q+SGG+RQR+A+AR L++ PIL+LDE + D
Sbjct: 447 RAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVET 506
Query: 165 RHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217
++ L ++ R T +I+H L +++ A R +V G++V G D L
Sbjct: 507 EAKVKAALDELMKGR--TTFIIAHRLS-TVRNADRILVFDNGRVVESGSFDEL 556
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 85.9 bits (212), Expect = 8e-18
Identities = 57/201 (28%), Positives = 107/201 (53%), Gaps = 15/201 (7%)
Query: 30 ILGPSGAGKSTLLSLMAGF------KYPTRGSIFLNGQNHTRSSPSK--RPLSILFQENN 81
I+GPSG+GKSTLL ++ K G + G++ + K + + ++FQ+ N
Sbjct: 41 IMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100
Query: 82 LFSHLTVWQNIALGIAPNLRLDHYQHAQ-VKQMLEKVFL----EDFFNRFPSQMSGGQRQ 136
F HL+++ NIA + + + + + V++ L KV L D N SQ+SGGQ+Q
Sbjct: 101 PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQ 160
Query: 137 RVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQI 196
R+ +AR L + +LL+DEP ++ D I L+ ++ + ++ ++++SHN + ++
Sbjct: 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL--KNEIAIVIVSHNPQQVARV 218
Query: 197 ATRFIVIAGGQIVYDGDPDRL 217
A + G++V G + +
Sbjct: 219 ADYVAFLYNGELVEWGSSNEI 239
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease.
Length = 2272
Score = 85.8 bits (212), Expect = 9e-18
Identities = 58/192 (30%), Positives = 103/192 (53%), Gaps = 7/192 (3%)
Query: 31 LGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-HTRSSPSKRPLSILFQENNLFSHLTVW 89
LG +GAGK+T LS++ G PT G++ + G++ T ++ L + Q N LF HLTV
Sbjct: 962 LGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVA 1021
Query: 90 QNIALGIAPNLRLDHYQHAQVKQ--MLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQ 147
++I L+ ++ AQ++ MLE L N +SGG ++++++A +
Sbjct: 1022 EHILF--YAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGD 1079
Query: 148 KPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQ 207
+++LDEP + DP R I LL + R T++M +H+++++ + R +I+ G+
Sbjct: 1080 AKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGR--TIIMSTHHMDEADLLGDRIAIISQGR 1137
Query: 208 IVYDGDPDRLMN 219
+ G P L N
Sbjct: 1138 LYCSGTPLFLKN 1149
Score = 48.5 bits (115), Expect = 1e-06
Identities = 45/190 (23%), Positives = 90/190 (47%), Gaps = 10/190 (5%)
Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-HTRSSPSKRPLSILFQEN 80
V E +LG +GAGK+T ++ G T G + G++ T S + + Q +
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFD 2021
Query: 81 NLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQM----LEKVFLEDFFNRFPSQMSGGQRQ 136
+ LT +++ L RL +++++ ++ + L + +R SGG ++
Sbjct: 2022 AIDDLLTGREHLYL----YARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKR 2077
Query: 137 RVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQI 196
+++ A LI P++LLDEP DP R + + + E + +++ SH++E+ +
Sbjct: 2078 KLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGR-AVVLTSHSMEECEAL 2136
Query: 197 ATRFIVIAGG 206
TR ++ G
Sbjct: 2137 CTRLAIMVKG 2146
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 85.1 bits (211), Expect = 1e-17
Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 14/211 (6%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKR-----PL 73
++ + E + ++G SG GKST + G T G + G++ + +
Sbjct: 41 TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDI 100
Query: 74 SILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHA------QVKQMLEKV-FLEDFFNRF 126
++FQ+ + L I IA LR H + + +VK M+ KV L + NR+
Sbjct: 101 QMIFQDP--LASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRY 158
Query: 127 PSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMI 186
P + SGGQ QR+ +AR LI + +++ DEP + D +++ +++ LL+Q+ E L+L+ I
Sbjct: 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFI 218
Query: 187 SHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217
+H+L I+ R +V+ G V G D +
Sbjct: 219 AHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 83.5 bits (206), Expect = 4e-17
Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 22/232 (9%)
Query: 2 IKLDHLIYCYDNLKMQFDFQ--------VNKAERIVILGPSGAGKSTLLSLMAGFKYPTR 53
I LD++ Y Y K F+F+ K + ++G +G+GKST++ L G
Sbjct: 7 IILDNVSYTYAK-KTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET 65
Query: 54 G-------SIFLNGQNHTRSSPSKRPLSILFQ--ENNLFSHLTVWQNIALGIAPNLRLDH 104
G +I N + ++ + ++FQ E LF T+ ++IA G NL +
Sbjct: 66 GQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQE-TIEKDIAFG-PVNLGENK 123
Query: 105 YQ-HAQVKQMLEKVFL-EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDP 162
+ + +V ++L+ V L ED+ R P ++SGGQ++RVALA + L+LDEP DP
Sbjct: 124 QEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 183
Query: 163 ALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDP 214
+ + L +++ E + ++M++HN++ ++IA IV+ G+++ G P
Sbjct: 184 KGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related.
Length = 585
Score = 83.4 bits (206), Expect = 4e-17
Identities = 56/210 (26%), Positives = 109/210 (51%), Gaps = 17/210 (8%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN---HTRSSPSKRPLSIL 76
F+ + + I+GP+GAGK+TL++L+ PT G I ++G + TR S ++ ++ +
Sbjct: 356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRES-LRKSIATV 414
Query: 77 FQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP-------SQ 129
FQ+ LF+ ++ +NI LG + Y+ A+ + F+ N + ++
Sbjct: 415 FQDAGLFNR-SIRENIRLGREGATDEEVYEAAKAAAAHD--FILKRSNGYDTLVGERGNR 471
Query: 130 MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189
+SGG+RQR+A+AR +++ PIL+LDE + D + + + R T +I+H
Sbjct: 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNR--TTFIIAHR 529
Query: 190 LEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
L +++ A + + G+++ G L+
Sbjct: 530 LS-TVRNADLVLFLDQGRLIEKGSFQELIQ 558
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 83.4 bits (207), Expect = 4e-17
Identities = 58/202 (28%), Positives = 100/202 (49%), Gaps = 19/202 (9%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPT---RGSIFLNGQ----NHTRSSPSKR 71
+V E + + G +GAGKSTL+ +++G YP G I G+ ++ R +
Sbjct: 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGV-YPHGTYEGEIIFEGEELQASNIRDTERA- 82
Query: 72 PLSILFQENNLFSHLTVWQNIALG--IAPNLRLDHYQ-HAQVKQMLEKVFLEDFFNRFPS 128
++I+ QE L L+V +NI LG I P +D+ + + +++L ++ L+
Sbjct: 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG 142
Query: 129 QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPAL-RHEILGLLKQVCDERQ--LTLLM 185
+ GQ+Q V +A+ L +Q +L+LDEP A +L E LL + D + + +
Sbjct: 143 NLGLGQQQLVEIAKALNKQARLLILDEPTA----SLTESETAVLLDIIRDLKAHGIACIY 198
Query: 186 ISHNLEDSMQIATRFIVIAGGQ 207
ISH L + I+ VI G+
Sbjct: 199 ISHKLNEVKAISDTICVIRDGR 220
Score = 56.1 bits (136), Expect = 8e-09
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 42/216 (19%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTR--GSIFLNGQNHTRSSPS-------- 69
F + + E + I G GAG++ L+ + G YP R G IF++G+ +P
Sbjct: 283 FSLRRGEILGIAGLVGAGRTELVQCLFG-AYPGRWEGEIFIDGKPVKIRNPQQAIAQGIA 341
Query: 70 ------KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQV-KQMLEKVFLEDF 122
KR + + + V +NI L LD + E + +
Sbjct: 342 MVPEDRKR--------DGIVPVMGVGKNITLAA-----LDRFTGGSRIDDAAELKTILES 388
Query: 123 FNRF----PS------QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLL 172
R S ++SGG +Q+ LA+CL+ IL+LDEP D ++EI L+
Sbjct: 389 IQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLI 448
Query: 173 KQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQI 208
Q+ ++ + +++IS L + + ++ R +V+ G++
Sbjct: 449 NQLV-QQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 83.2 bits (205), Expect = 5e-17
Identities = 58/205 (28%), Positives = 110/205 (53%), Gaps = 20/205 (9%)
Query: 30 ILGPSGAGKSTLLSLM-------AGFKYPTRGSIFLNGQ---NHTRSSPSKRPLSILFQE 79
++GP+G+GK+T L + +G++Y G + L G+ N+ +R + +LFQ
Sbjct: 52 LMGPTGSGKTTFLRTLNRMNDKVSGYRY--SGDVLLGGRSIFNYRDVLEFRRRVGMLFQR 109
Query: 80 NNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQM-LEKVFL----EDFFNRFPSQMSGGQ 134
N F +++ N+ G+ + + + V Q L +V L +D + P ++SGGQ
Sbjct: 110 PNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQ 168
Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSM 194
+Q + LAR L +LLLDEP + DP +I ++ + D +LT+++++HNL +
Sbjct: 169 QQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAA 226
Query: 195 QIATRFIVIAGGQIVYDGDPDRLMN 219
+I+ R + G++V +G ++L +
Sbjct: 227 RISDRAALFFDGRLVEEGPTEQLFS 251
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 83.2 bits (206), Expect = 6e-17
Identities = 61/207 (29%), Positives = 97/207 (46%), Gaps = 18/207 (8%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK-RPLSILF 77
DF ++ E +LG +GAGKSTL+ ++AG P G++ + G R +P+K L I
Sbjct: 31 DFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYL 90
Query: 78 --QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGG-- 133
QE LF +L+V +NI G+ + + ++ L+ S G
Sbjct: 91 VPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD---------SSAGSL 141
Query: 134 ---QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNL 190
RQ V + R L+R IL+LDEP A PA + ++++ + + ++ ISH L
Sbjct: 142 EVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKL 200
Query: 191 EDSMQIATRFIVIAGGQIVYDGDPDRL 217
+ Q+A R V+ G I G L
Sbjct: 201 PEIRQLADRISVMRDGTIALSGKTADL 227
Score = 61.6 bits (150), Expect = 1e-10
Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 39/213 (18%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSS------------ 67
+V E + + G GAG++ L + G + G I LNG+ S
Sbjct: 284 LEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYL 343
Query: 68 PSKRPLSILFQENNL--------FSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFL 119
P R S L+ + L + W A N L+ Y+ A L
Sbjct: 344 PEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPA---RENAVLERYRRA----------L 390
Query: 120 EDFFNRFPSQ----MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQV 175
FN Q +SGG +Q+V +A+CL +L++DEP D + R++I L++ +
Sbjct: 391 NIKFNH-AEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSI 449
Query: 176 CDERQLTLLMISHNLEDSMQIATRFIVIAGGQI 208
+ + +L IS +LE+ Q+A R +V+ G+I
Sbjct: 450 A-AQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 82.1 bits (203), Expect = 1e-16
Identities = 50/205 (24%), Positives = 100/205 (48%), Gaps = 11/205 (5%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSP---SKRPLSI 75
+ V E +LG +GAGKSTL+ +++G PT+G+I +N N+ + ++ + I
Sbjct: 25 NLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGI 84
Query: 76 LFQENNLFSHLTVWQNIALGIAPNLR------LDHYQHAQVKQ-MLEKVFLEDFFNRFPS 128
++QE ++ LTV +N+ +G + +D + ML +V L+ + +
Sbjct: 85 IYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA 144
Query: 129 QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISH 188
+S +Q + +A+ L+ ++++DEP + + ++ Q+ E ++ ISH
Sbjct: 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGT-AIVYISH 203
Query: 189 NLEDSMQIATRFIVIAGGQIVYDGD 213
L + +I R+ V+ G V G
Sbjct: 204 KLAEIRRICDRYTVMKDGSSVCSGM 228
Score = 68.3 bits (167), Expect = 2e-12
Identities = 51/217 (23%), Positives = 108/217 (49%), Gaps = 22/217 (10%)
Query: 11 YDNLKMQ-FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSP- 68
D K++ F V + E + G G+G++ L++ + G G I LNG++ + SP
Sbjct: 274 RDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPL 333
Query: 69 --SKRPLSILFQ---ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQ--VKQMLEKVFLED 121
K+ ++ + + +N F + ++ QN+A I+ +L+ Y+ A ++ E+ E+
Sbjct: 334 DAVKKGMAYITESRRDNGFFPNFSIAQNMA--ISRSLKDGGYKGAMGLFHEVDEQRTAEN 391
Query: 122 ----------FFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGL 171
N+ +++SGG +Q+V +++ L +++ DEP D + EI +
Sbjct: 392 QRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKV 451
Query: 172 LKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQI 208
++Q+ D+ + +LM+S L + + + R V G++
Sbjct: 452 MRQLADDGK-VILMVSSELPEIITVCDRIAVFCEGRL 487
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 82.4 bits (204), Expect = 1e-16
Identities = 64/229 (27%), Positives = 117/229 (51%), Gaps = 28/229 (12%)
Query: 2 IKLDHLIYCY---DNLKMQ-FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIF 57
I+ ++ + Y + ++ +F++ + + ++G SG+GKST+ +L+ F G I
Sbjct: 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401
Query: 58 LNGQN---HTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQML 114
L+G + +T +S + ++++ Q +LF+ T+ NIA R + Y Q+++
Sbjct: 402 LDGHDLRDYTLAS-LRNQVALVSQNVHLFND-TIANNIAYA-----RTEQYSREQIEEAA 454
Query: 115 EKVFLEDFFNRFPS-----------QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPA 163
+ DF N+ + +SGGQRQR+A+AR L+R PIL+LDE + D
Sbjct: 455 RMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
Query: 164 LRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDG 212
I L ++ R T L+I+H L +++ A +V+ G+IV G
Sbjct: 515 SERAIQAALDELQKNR--TSLVIAHRLS-TIEKADEILVVEDGEIVERG 560
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 81.9 bits (202), Expect = 1e-16
Identities = 56/210 (26%), Positives = 111/210 (52%), Gaps = 21/210 (10%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSL-------MAGFKYPTRGSIFLNGQNHTRS----SP 68
++ K + I+GPSG GK+TLL + GF+ G I+ GQ+ +
Sbjct: 24 MKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR--VEGKIYFKGQDIYDPQLDVTE 81
Query: 69 SKRPLSILFQENNLFSHLTVWQNIALGIAPN-LRLDHYQHAQVKQMLEKVFLEDF----F 123
++ + ++FQ+ F ++++ N+A G + ++ H V++ L+K L D
Sbjct: 82 YRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSEL 140
Query: 124 NRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183
N+ +++SGGQ+QR+ +AR L + ++LLDEP + DP I LL+++ + T+
Sbjct: 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTI 198
Query: 184 LMISHNLEDSMQIATRFIVIAGGQIVYDGD 213
++++HN+ +++IA + G+++ G
Sbjct: 199 VIVTHNIGQAIRIADYIAFMYRGELIEYGP 228
>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes an multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHPM, Nitrile Hydratase
Propeptide Microcin.
Length = 710
Score = 81.1 bits (201), Expect = 2e-16
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 33/219 (15%)
Query: 18 FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKR----PL 73
F + +R+ ++G SG+GKST+ L+AG P G I +G R + +
Sbjct: 498 FSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGI--PREEIPREVLANSV 555
Query: 74 SILFQENNLFSHLTVWQNIAL--GIAPNLRL-----DHYQHAQVKQM---LEKVFLEDFF 123
+++ Q+ LF TV N+ L P+ L D H + + E
Sbjct: 556 AMVDQDIFLFEG-TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGA 614
Query: 124 NRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183
N +SGGQRQR+ +AR L+R IL+LDE + DP I L++ R T
Sbjct: 615 N-----LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTC 665
Query: 184 LMISHNL---EDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
++++H L D +I IV+ G++V G + L
Sbjct: 666 IIVAHRLSTIRDCDEI----IVLERGKVVQRGTHEELWA 700
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 81.0 bits (201), Expect = 2e-16
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 20/152 (13%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQ 78
F +N E + I GP+GAGK++LL ++AG P G + G+ R +
Sbjct: 21 SFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDE-------YH 73
Query: 79 ENNLF--------SHLTVWQNIALGIAPNLRLDHYQH-AQVKQMLEKVFLEDFFNRFPSQ 129
++ L+ + LT +N+ RL + + L +V L F + Q
Sbjct: 74 QDLLYLGHQPGIKTELTALENLRF----YQRLHGPGDDEALWEALAQVGLAGFEDVPVRQ 129
Query: 130 MSGGQRQRVALARCLIRQKPILLLDEPFAVFD 161
+S GQ++RVALAR + + P+ +LDEPF D
Sbjct: 130 LSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
>gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 80.7 bits (200), Expect = 3e-16
Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 29/157 (18%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--------- 69
F + E +V+ GP+G+GK+TLL L+AG P G+I L+G + +
Sbjct: 22 SFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81
Query: 70 ---KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRF 126
K L++ EN L W LG L + LE V L +
Sbjct: 82 NAMKPALTV--AEN-----LEFWAAF-LG-GEELDIAA--------ALEAVGLAPLAHLP 124
Query: 127 PSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPA 163
+S GQ++RVALAR L+ +PI +LDEP A D A
Sbjct: 125 FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA 161
>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 544
Score = 80.5 bits (199), Expect = 4e-16
Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 35/189 (18%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSI--LF 77
F++ E + I+GPSG+GKSTL L+ G PT GS+ L+G + + I L
Sbjct: 339 FRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLP 398
Query: 78 QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFL---EDFFNRFP------- 127
Q+ LF TV +NIA R ++A ++++E L + R P
Sbjct: 399 QDVELFPG-TVAENIA-------RFG--ENADPEKIIEAAKLAGVHELILRLPDGYDTVI 448
Query: 128 ----SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDP----ALRHEILGLLKQVCDER 179
+ +SGGQRQR+ALAR L +++LDEP + D AL + I L R
Sbjct: 449 GPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-----R 503
Query: 180 QLTLLMISH 188
+T+++I+H
Sbjct: 504 GITVVVITH 512
>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein.
Length = 617
Score = 79.7 bits (197), Expect = 6e-16
Identities = 57/208 (27%), Positives = 106/208 (50%), Gaps = 21/208 (10%)
Query: 26 ERIVILGPSGAGKSTLLSLMAGFKYPT----RGSIFLNGQNHTRSSPSKRPLSILFQENN 81
E + ++G SGAGK+TL++ +A F+ P GS+ LNG + R +S Q+++
Sbjct: 52 ELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNG--MPIDAKEMRAISAYVQQDD 108
Query: 82 LF-SHLTVWQNIALGIAPNLRLDHY-----QHAQVKQMLEKVFLEDFFNRF---PSQM-- 130
LF LTV + L +LR+ + +V ++L+ + L N P ++
Sbjct: 109 LFIPTLTVRE--HLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKG 166
Query: 131 -SGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189
SGG+R+R+A A L+ P+L DEP + D + + ++ +LK + + + + I
Sbjct: 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQP 226
Query: 190 LEDSMQIATRFIVIAGGQIVYDGDPDRL 217
+ ++ + I++A G++ Y G PD+
Sbjct: 227 SSELFELFDKIILMAEGRVAYLGSPDQA 254
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake.
Length = 555
Score = 79.2 bits (195), Expect = 8e-16
Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 15/199 (7%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLSIL 76
D ++ + + + I+G +G GKSTL L G P G I L+G + S + S +
Sbjct: 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAI 421
Query: 77 FQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQ 136
F + +LF L G +L + Q+ Q ++ +KV +ED + +S GQ++
Sbjct: 422 FADFHLFDDLI---GPDEGEHASLD-NAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477
Query: 137 RVALARCLIRQKPILLLDEPFAVFDPALRH----EILGLLKQVCDERQLTLLMISHNLED 192
R+AL + +PILL DE A DPA + E+L LK+ + T+++ISH+ +
Sbjct: 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR----QGKTIIIISHD-DQ 532
Query: 193 SMQIATRFIVIAGGQIVYD 211
++A + I +A G IV D
Sbjct: 533 YFELADQIIKLAAGCIVKD 551
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 79.1 bits (195), Expect = 1e-15
Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 33/188 (17%)
Query: 31 LGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQN----HTRSSPSKRPLSILFQE 79
+GPSG GKST+L L+ GF+ G + +G+N +R + ++FQ+
Sbjct: 42 IGPSGCGKSTILRCFNRLNDLIPGFR--VEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQK 99
Query: 80 NNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVF--------LEDFFNRFPSQMS 131
N F +++ NIA G R++ Y+ + +++E+ ++D + +S
Sbjct: 100 PNPFPK-SIYDNIAYGA----RINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLS 153
Query: 132 GGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLE 191
GGQ+QR+ +AR + Q ++L+DEP + DP I L+ ++ + Q T+++++HN
Sbjct: 154 GGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL--KEQYTIIIVTHN-- 209
Query: 192 DSMQIATR 199
MQ A R
Sbjct: 210 --MQQAAR 215
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 78.1 bits (192), Expect = 2e-15
Identities = 58/244 (23%), Positives = 123/244 (50%), Gaps = 21/244 (8%)
Query: 1 MIKLD--HLIYCYDNLKMQFDFQVNKAERIVI--LGPSGAGKSTLLSL---MAGFKYPTR 53
+K+D + + Y + + E+ V+ +GPSG GKST L L M TR
Sbjct: 1 TVKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 54 --GSIFLNGQN----HTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPN-LRLDHYQ 106
G I ++G+N + ++ + ++FQ N F ++++N+A G+ N ++ + +
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFI 119
Query: 107 HAQVKQMLEKVFL----EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDP 162
+V++ L+ L +D +SGGQ+QR+ +AR + +LL+DEP + DP
Sbjct: 120 RQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDP 179
Query: 163 ALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGLI 222
++ L+ ++ ++ T+++++HN++ + +++ + G++V D ++
Sbjct: 180 ISTAKVEELIHEL--KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPE 237
Query: 223 PEST 226
E+T
Sbjct: 238 KEAT 241
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 78.1 bits (192), Expect = 2e-15
Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 17/218 (7%)
Query: 6 HLIYCYDNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFK-----YPTRGSIFLNG 60
HL Y D N+ E ++GPSG GKST L + G++ L G
Sbjct: 12 HLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71
Query: 61 QN----HTRSSPSKRPLSILFQENNLFSHLTVWQNIALG-----IAPNLRLDHYQHAQVK 111
QN + ++ + ++FQ+ N F ++++N+ G + LD +K
Sbjct: 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLK 130
Query: 112 QMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGL 171
Q ++D + +SGGQ+QRV +AR L + ++LLDEP + DP +I +
Sbjct: 131 QAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENM 190
Query: 172 LKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIV 209
L ++ D Q T+++++H++ + +I+ + G ++
Sbjct: 191 LLELRD--QYTIILVTHSMHQASRISDKTAFFLTGNLI 226
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 78.2 bits (192), Expect = 2e-15
Identities = 57/212 (26%), Positives = 109/212 (51%), Gaps = 17/212 (8%)
Query: 2 IKLDHLIYCYDNLKM--QFDFQVNKAERIVILGPSGAGKSTL---LSLMAGFKYPTR--G 54
IK+++L + YD K+ ++ +++ I+GPSG GKST L+ M + R G
Sbjct: 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEG 67
Query: 55 SIFLNGQN----HTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIA-----PNLRLDHY 105
+ QN + +R +S++ + NLF ++V+ N+A G+ P L +D
Sbjct: 68 RVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDI 126
Query: 106 QHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALR 165
+ +K ++ ++ +SGGQ+QR+ +AR L + +LL+DEP DP
Sbjct: 127 VESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIAS 186
Query: 166 HEILGLLKQVCDERQLTLLMISHNLEDSMQIA 197
++ L++ + +LT++++SHNL +++
Sbjct: 187 MKVESLIQSLRLRSELTMVIVSHNLHQVSRLS 218
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 78.0 bits (192), Expect = 2e-15
Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 30/223 (13%)
Query: 17 QFDFQVNKAERIVILGPSGAGKS-TLLSLM-----AG---------FKYPTRGSIFLNGQ 61
F + + E + I+G SG+GKS T L+LM AG + +R I L+ Q
Sbjct: 34 NLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQ 93
Query: 62 N-----HTRSSPSKRPLSILFQE--NNLFSHLTVWQNIALGIAPNLRLDHYQH-AQVKQM 113
+ H R + ++++FQE +L TV + IA I + + + K+M
Sbjct: 94 SAAQMRHVRGAD----MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRM 149
Query: 114 LEKVFL---EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILG 170
L++V + + +R+P Q+SGG RQRV +A L + +L+ DEP D ++ +IL
Sbjct: 150 LDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ 209
Query: 171 LLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGD 213
L+K + E + ++ I+H++ +IA R +V+ G+ V G
Sbjct: 210 LIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGS 252
Score = 74.9 bits (184), Expect = 2e-14
Identities = 64/205 (31%), Positives = 101/205 (49%), Gaps = 21/205 (10%)
Query: 20 FQVNKAERIVILGPSGAGKST----LLSLMAGFKYPTRGSIFLNGQNHTRSSPSK----- 70
F + E + ++G SG+GKST LL L+ G I NGQ SP K
Sbjct: 345 FDLWPGETLSLVGESGSGKSTTGRALLRLVES----QGGEIIFNGQRIDTLSPGKLQALR 400
Query: 71 RPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQH-----AQVKQMLEKVFLE-DFFN 124
R + +FQ+ ++ L Q + I LR+ A+V +LE+V L +
Sbjct: 401 RDIQFIFQDP--YASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW 458
Query: 125 RFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLL 184
R+P + SGGQRQR+ +AR L +++ DE + D ++R +I+ LL + + + L
Sbjct: 459 RYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYL 518
Query: 185 MISHNLEDSMQIATRFIVIAGGQIV 209
ISH++ +I+ R V+ GQIV
Sbjct: 519 FISHDMAVVERISHRVAVMYLGQIV 543
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 77.1 bits (190), Expect = 3e-15
Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 8/174 (4%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLSILF 77
F + E +I GPSG GKSTLL ++A PT G++ G++ + P ++ +S
Sbjct: 28 FSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCA 87
Query: 78 QENNLFSHLTVWQNIALGIAP-NLRLDHYQHAQVKQMLEKVFL-EDFFNRFPSQMSGGQR 135
Q LF TV+ N+ I P +R A LE+ L + + +++SGG++
Sbjct: 88 QTPTLFGD-TVYDNL---IFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEK 143
Query: 136 QRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189
QR++L R L +LLLDE + D + +H + ++ + E+ + +L ++H+
Sbjct: 144 QRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 76.8 bits (189), Expect = 4e-15
Identities = 51/199 (25%), Positives = 106/199 (53%), Gaps = 6/199 (3%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSI--LF 77
F + + + + I+G +G+GKSTL ++AG PT G + ++ S R I +F
Sbjct: 34 FTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIF 93
Query: 78 QE--NNLFSHLTVWQNIALGIAPNLRLDHYQHA-QVKQMLEKV-FLEDFFNRFPSQMSGG 133
Q+ +L + Q + + N L+ Q Q+ + L +V L D + +P ++ G
Sbjct: 94 QDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPG 153
Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDS 193
Q+QR+ LAR LI + +++ DE A D ++R +++ L+ ++ +++ ++ + ++ +L
Sbjct: 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMM 213
Query: 194 MQIATRFIVIAGGQIVYDG 212
I+ + +V+ G++V G
Sbjct: 214 KHISDQVLVMHQGEVVERG 232
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 76.4 bits (188), Expect = 6e-15
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 12/148 (8%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQ 78
DF V+ E +++ G +GAGK+TLL ++AG + G I ++G+ TR S R ++ L
Sbjct: 31 DFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRS-RFMAYLGH 89
Query: 79 ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQM----LEKVFLEDFFNRFPSQMSGGQ 134
L + L+ +N+ L H + A+ QM L V L + + Q+S GQ
Sbjct: 90 LPGLKADLSTLENLHF-----LCGLHGRRAK--QMPGSALAIVGLAGYEDTLVRQLSAGQ 142
Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDP 162
++R+ALAR + P+ LLDEP+A D
Sbjct: 143 KKRLALARLWLSPAPLWLLDEPYANLDL 170
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 76.2 bits (187), Expect = 7e-15
Identities = 59/214 (27%), Positives = 106/214 (49%), Gaps = 23/214 (10%)
Query: 2 IKLDHLIYCYDNLKM--QFDFQVNKAERIVILGPSGAGKSTLLSLM---AGFKYPTR--G 54
IK+ L + Y+ K + + + I+GPSG GKST + + + + P + G
Sbjct: 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEG 67
Query: 55 SIFLNGQNHTRSSPS----KRPLSILFQENNLFSHLTVWQNIALGIA-----PNLRLDHY 105
+ GQN + +R + ++FQ N F +++++N+A G+ P LD
Sbjct: 68 VVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEI 126
Query: 106 QHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALR 165
+ +K ++D N+ +SGGQ+QR+ +AR L + +LL+DEP + DP
Sbjct: 127 VESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIAT 186
Query: 166 HEILGLLKQVCDERQLTLLMISHNLEDSMQIATR 199
++ L+ + +LT+ +++HN MQ ATR
Sbjct: 187 MKVEELIHSL--RSELTIAIVTHN----MQQATR 214
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 76.3 bits (188), Expect = 7e-15
Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 23/216 (10%)
Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHT--RSSPSKRPLS 74
+F + + + I GP+G+GKSTLLSL+ + G I + T + + L+
Sbjct: 333 NVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA 392
Query: 75 ILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPS------ 128
++ Q LFS TV NIALG R D Q +++ + + D R P
Sbjct: 393 VVSQTPFLFSD-TVANNIALG-----RPDATQ-QEIEHVARLASVHDDILRLPQGYDTEV 445
Query: 129 -----QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183
+SGGQ+QR+++AR L+ IL+LD+ + D H+IL L+Q + R T+
Sbjct: 446 GERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGR--TV 503
Query: 184 LMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
++ +H L ++ A+ +V+ G I G+ D+L
Sbjct: 504 IISAHRLS-ALTEASEILVMQHGHIAQRGNHDQLAQ 538
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 76.0 bits (187), Expect = 8e-15
Identities = 57/201 (28%), Positives = 97/201 (48%), Gaps = 33/201 (16%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHTRSSPS-- 69
+ K ++GPSG GKSTLL L+ G + G I NG+N S
Sbjct: 26 TISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR--ITGDILYNGENIMDSGADVV 83
Query: 70 --KRPLSILFQENNLFSHLTVWQNIALG-----IAPNLRLDHYQHAQVKQMLEKVFL--- 119
+R + ++FQ N F ++++N+A G LD V++ L+ L
Sbjct: 84 ALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLD----TIVEKSLKGAALWDE 138
Query: 120 -EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDE 178
+D + +SGGQ+QR+ +AR L ++L+DEP + DP +I L++ + +
Sbjct: 139 VKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL--K 196
Query: 179 RQLTLLMISHNLEDSMQIATR 199
++ T+++++HN MQ A R
Sbjct: 197 KEYTVIIVTHN----MQQAAR 213
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 75.4 bits (185), Expect = 1e-14
Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 32/219 (14%)
Query: 30 ILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQN--HTRSSP--SKRPLSILFQ 78
++GPSG GK+T L L G + G I L+GQ+ R P +R + ++FQ
Sbjct: 35 LIGPSGCGKTTFLRAINRMHDLTPGAR--VTGRILLDGQDIYGPRVDPVAMRRRVGMVFQ 92
Query: 79 ENNLFSHLTVWQNIALGIAPNLRL------DHYQHAQVKQMLEKVFLEDFFNRFPSQ--- 129
+ N F ++V+ N+ G L+L DH + + ++ +R +
Sbjct: 93 KPNPFPTMSVFDNVVAG----LKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATG 148
Query: 130 MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189
+SGGQ+QR+ +AR L + ILL+DEP + DPA I L+ + ++ T+++++HN
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL--KKVTTIIIVTHN 206
Query: 190 LEDSMQIA--TRFIVIAGGQIVYDGDPDRLMNGLIPEST 226
+ + +++ T F ++ G +V G D+L E T
Sbjct: 207 MHQAARVSDTTSFFLV--GDLVEHGPTDQLFTNPRDERT 243
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 75.4 bits (185), Expect = 1e-14
Identities = 53/202 (26%), Positives = 110/202 (54%), Gaps = 16/202 (7%)
Query: 30 ILGPSGAGKSTLLSLMAGFK--YPT---RGSIFLNGQN--HTRSSPS--KRPLSILFQEN 80
I+GPSG GKST+L + P+ G I L+ + P +R + ++FQ+
Sbjct: 35 IIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKP 94
Query: 81 NLFSHLTVWQNIALGIAPNLRLDHYQHAQ-VKQMLEKVFLED-FFNRFPS---QMSGGQR 135
N F ++++ N+ G N R++ + + V+ L++V L D +R S ++SGGQ+
Sbjct: 95 NPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQ 154
Query: 136 QRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQ 195
QR+ +AR + + ++L+DEP + DP +I L++++ + + T+++++HN++ + +
Sbjct: 155 QRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL--KEKYTIIIVTHNMQQAAR 212
Query: 196 IATRFIVIAGGQIVYDGDPDRL 217
++ G +V G+ ++
Sbjct: 213 VSDYTAFFYMGDLVECGETKKI 234
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 75.5 bits (185), Expect = 1e-14
Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 31/239 (12%)
Query: 1 MIKLDHLIYCYDNLKM--QFDFQVNKAERIVILGPSGAGKSTLL-------SLMAGFKYP 51
+I+ ++L Y + K + ++ K ++GPSG GKST L L+ G K
Sbjct: 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK-- 64
Query: 52 TRGSIFLNGQNHTRSS----PSKRPLSILFQENNLFSHLTVWQNIALG-----IAPNLRL 102
G++ G+N ++ +R + ++FQ N F ++++ NI+ G +L
Sbjct: 65 IEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKL 123
Query: 103 DHYQHAQVKQMLEKVFL----EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFA 158
D V+Q L+K L +D N +SGGQ+QR+ +AR L + ++L+DEP +
Sbjct: 124 DEI----VEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTS 179
Query: 159 VFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217
DP +I L+ + + T+++++HN++ + +I+ R G I + D L
Sbjct: 180 ALDPISTGKIEELIINL--KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 75.4 bits (185), Expect = 1e-14
Identities = 54/185 (29%), Positives = 100/185 (54%), Gaps = 27/185 (14%)
Query: 31 LGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHTRSSPS----KRPLSILFQE 79
+GPSG GKST+L L+ GF++ G + GQ+ +R + ++FQ+
Sbjct: 40 IGPSGCGKSTVLRSLNRMNDLVKGFRF--EGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQ 97
Query: 80 NNLFSHLTVWQNIALGIAPNLRLDHYQ---HAQVKQMLEKVFL----EDFFNRFPSQMSG 132
N FS ++++ N+A G LRL+ Y+ +VK L+ L +D +SG
Sbjct: 98 PNPFS-MSIFDNVAFG----LRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSG 152
Query: 133 GQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLED 192
GQ+QR+ +AR + + +LLLDEP + DP + L+ ++ ++ T+ +++HN++
Sbjct: 153 GQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL--KKDYTIALVTHNMQQ 210
Query: 193 SMQIA 197
++++A
Sbjct: 211 AIRVA 215
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 75.3 bits (185), Expect = 1e-14
Identities = 51/205 (24%), Positives = 108/205 (52%), Gaps = 20/205 (9%)
Query: 30 ILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHTRSSPSKR---PLSILFQE 79
++GPSG GKSTLL L+ G K G + ++G++ + + ++FQ+
Sbjct: 34 LIGPSGCGKSTLLRCLNRMNDLIEGVK--ITGKLTMDGEDIYGNIDVADLRIKVGMVFQK 91
Query: 80 NNLFSHLTVWQNIALGI-APNLRLDHYQHAQVKQMLEKVFL----EDFFNRFPSQMSGGQ 134
N F +++++N+A G+ A ++ V++ L L +D +SGGQ
Sbjct: 92 PNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQ 150
Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSM 194
+QR+ +AR + + ++L+DEP + DP H+I L++++ ++ T+++++H+++ +
Sbjct: 151 QQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL--KKNYTIVIVTHSMQQAR 208
Query: 195 QIATRFIVIAGGQIVYDGDPDRLMN 219
+I+ R G++V D + +
Sbjct: 209 RISDRTAFFLMGELVEHDDTQVIFS 233
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 75.1 bits (184), Expect = 2e-14
Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 19/211 (9%)
Query: 16 MQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFK-----YPTRGSIFLNGQNHTRSSPS- 69
+ DF+ + E ++GPSG GKST L + G I GQN S
Sbjct: 23 ISLDFE--EKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80
Query: 70 ---KRPLSILFQENNLFSHLTVWQNIALG-----IAPNLRLDHYQHAQVKQMLEKVFLED 121
++ + ++FQ+ F +V+ N+A G + +D +KQ +D
Sbjct: 81 VELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD 139
Query: 122 FFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQL 181
+R SGGQ+QR+ +AR L + ++LLDEP + DP EI L ++ + Q
Sbjct: 140 NLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL--KHQY 197
Query: 182 TLLMISHNLEDSMQIATRFIVIAGGQIVYDG 212
T +M++HNL+ + +I+ + + G ++ G
Sbjct: 198 TFIMVTHNLQQAGRISDQTAFLMNGDLIEAG 228
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005).
Length = 500
Score = 74.9 bits (184), Expect = 2e-14
Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 21/225 (9%)
Query: 1 MIKLDHLIYCYDNLKM--QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPT---RGS 55
++++ ++ + +K D +V E + + G +GAGKSTL+ +++G YP G
Sbjct: 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGV-YPHGTWDGE 59
Query: 56 IFLNGQ----NHTRSSPSKRPLSILFQENNLFSHLTVWQNIALG--IAPNLRLDHY--QH 107
I+ +G ++ R + + I+ QE L L+V +NI LG I Y +
Sbjct: 60 IYWSGSPLKASNIRDTERA-GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY 118
Query: 108 AQVKQMLEKVFLEDFFNRFP-SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRH 166
+ K +L ++ L+ P GGQ+Q V +A+ L +Q +L+LDEP +
Sbjct: 119 LRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT---EK 175
Query: 167 EILGLLKQVCD--ERQLTLLMISHNLEDSMQIATRFIVIAGGQIV 209
E LL + D + + ISH L + + VI GQ V
Sbjct: 176 ETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
Score = 61.8 bits (150), Expect = 1e-10
Identities = 49/203 (24%), Positives = 104/203 (51%), Gaps = 16/203 (7%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTR--GSIFLNGQNHTRSSPSK--RPLSI 75
F + + E + + G GAG++ L+ + G YP + G++F+NG+ +P++ R
Sbjct: 281 FSLRRGEILGVAGLVGAGRTELVQALFG-AYPGKFEGNVFINGKPVDIRNPAQAIRAGIA 339
Query: 76 LFQEN----NLFSHLTVWQNIALGI----APNLRLDHYQHAQ-VKQMLEKVFLEDFFNRF 126
+ E+ + L V +NI L + +R+D Q + ++++ ++
Sbjct: 340 MVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFL 399
Query: 127 P-SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLM 185
P ++SGG +Q+ LA+ L+ +L+LDEP D ++EI L+ Q+ + + +++
Sbjct: 400 PIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLA-QEGVAIIV 458
Query: 186 ISHNLEDSMQIATRFIVIAGGQI 208
+S L + + ++ R +VI G++
Sbjct: 459 VSSELAEVLGLSDRVLVIGEGKL 481
>gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 74.6 bits (184), Expect = 2e-14
Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 18/177 (10%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK-RPL-SIL 76
+ + + E + ++G +G+GKSTL L+ G P G I L+G+ T P R L S +
Sbjct: 343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAV 402
Query: 77 FQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPS-QMSGGQR 135
F + +LF L + A ++ + + +M K+ LED R + ++S GQ+
Sbjct: 403 FTDFHLFDQLLGPEGKP---ANPALVEKW--LERLKMAHKLELED--GRISNLKLSKGQK 455
Query: 136 QRVALARCLIRQKPILLLDEPFAVFDPALR----HEILGLLKQVCDERQLTLLMISH 188
+R+AL L ++ ILLLDE A DP R +L LL+ E T+ ISH
Sbjct: 456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQ----EMGKTIFAISH 508
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 74.5 bits (183), Expect = 2e-14
Identities = 58/225 (25%), Positives = 117/225 (52%), Gaps = 32/225 (14%)
Query: 11 YDNLKMQFDFQVN--KAERIVILGPSGAGKSTLL---SLMAGF--KYPTRGSIFLNGQN- 62
Y + ++ FD ++ K E +GPSG GKST L + M F +G + ++G +
Sbjct: 15 YGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDV 74
Query: 63 HTRSSPS---KRPLSILFQENNLFSHLTVWQNIALGIAPNL--------RLDHYQHAQVK 111
++ + + + ++FQ+ N F +++ N+A G P L +LD V+
Sbjct: 75 YSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYG--PKLHGLAKNKKKLDEI----VE 127
Query: 112 QMLEKVFL-EDFFNRFPS---QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHE 167
+ L V L E+ +R ++SGGQ+QR+ +AR + + +LL+DEP + DP +
Sbjct: 128 KSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNV 187
Query: 168 ILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDG 212
I L++++ ++ T+++++H+++ + +++ R G+IV
Sbjct: 188 IENLIQEL--KKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYN 230
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 74.4 bits (183), Expect = 2e-14
Identities = 73/243 (30%), Positives = 110/243 (45%), Gaps = 47/243 (19%)
Query: 2 IKLDHLIYCY--DNLKMQFDFQVNKAER--IVILGPSGAGKSTLLSLMAGFKYPTRGSIF 57
I +D++ + Y DNL +Q + ++ R + ++G +G+GKSTL SL+ G+ T G I
Sbjct: 341 IDIDNVSFAYRDDNLVLQ-NINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399
Query: 58 LNGQNHTRSSPSKRPLSILFQENNLFSHLTVWQNIAL----------GIAPNLRLD-HYQ 106
L+G RPLS L SH + Q +A+ N+ L
Sbjct: 400 LDG----------RPLSSL-------SHSVLRQGVAMVQQDPVVLADTFLANVTLGRDIS 442
Query: 107 HAQVKQMLEKVFLEDFFNRFP-----------SQMSGGQRQRVALARCLIRQKPILLLDE 155
QV Q LE V L + P + +S GQ+Q +ALAR L++ IL+LDE
Sbjct: 443 EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDE 502
Query: 156 PFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPD 215
A D I L V TL++I+H L ++ A +V+ GQ V G
Sbjct: 503 ATANIDSGTEQAIQQALAAV--REHTTLVVIAHRLSTIVE-ADTILVLHRGQAVEQGTHQ 559
Query: 216 RLM 218
+L+
Sbjct: 560 QLL 562
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 73.9 bits (181), Expect = 3e-14
Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 20/223 (8%)
Query: 11 YDNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFK--YPTR---GSIFLNGQNHTR 65
Y LK + V++ + ++GPSG GKST L YP G I L+ N
Sbjct: 29 YQALK-NINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87
Query: 66 SSPSKRPL------SILFQENNLFSHLTVWQNIALGI-APNLRLDHYQHAQVKQMLEKVF 118
SP P+ S++FQ+ N F ++++N+A G+ ++ +V+ L
Sbjct: 88 LSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAA 146
Query: 119 L----EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQ 174
L +D +SGGQ+QR+ +AR L ILL DEP + DP I L+
Sbjct: 147 LWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISD 206
Query: 175 VCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217
+ + ++T+L+++HN++ + +++ + G+++ G D +
Sbjct: 207 LKN--KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 73.7 bits (181), Expect = 4e-14
Identities = 56/186 (30%), Positives = 99/186 (53%), Gaps = 25/186 (13%)
Query: 30 ILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQN----HTRSSPSKRPLSILFQ 78
++GPSG GKST L L+ G + G I L+G+N H +R + ++FQ
Sbjct: 37 LIGPSGCGKSTFLRCLNRMNDLIPGAR--VEGEILLDGENIYDPHVDVVELRRRVGMVFQ 94
Query: 79 ENNLFSHLTVWQNIALGIAPN-LRLDHYQHAQVKQMLEKVFL----EDFFNRFPSQMSGG 133
+ N F ++++N+A G+ N ++ Y +V++ L L +D + +SGG
Sbjct: 95 KPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGG 153
Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDS 193
Q+QR+ +AR L + +LL+DEP + DP +I L+ ++ + + T+++++HN
Sbjct: 154 QQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL--KARYTIIIVTHN---- 207
Query: 194 MQIATR 199
MQ A R
Sbjct: 208 MQQAAR 213
>gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se.
Length = 253
Score = 73.7 bits (181), Expect = 4e-14
Identities = 55/220 (25%), Positives = 102/220 (46%), Gaps = 25/220 (11%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQE 79
F + E + I+G SG+GKSTLL +AG P G+ + S ++ L L +
Sbjct: 24 FDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTA-----TYIMRSGAELELYQLSEA 78
Query: 80 NNLFSHLTVWQNIALGIAPNLRLD-----------------HY--QHAQVKQMLEKVFLE 120
T W + LR+ HY A LE+V ++
Sbjct: 79 ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEID 138
Query: 121 -DFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDER 179
+ P SGG +QR+ +AR L+ + ++ +DEP D +++ +L LL+ + +
Sbjct: 139 PTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDL 198
Query: 180 QLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
L +++++H+L + +A R +V+ G++V G D++++
Sbjct: 199 GLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD 238
>gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 73.4 bits (180), Expect = 5e-14
Identities = 50/204 (24%), Positives = 107/204 (52%), Gaps = 21/204 (10%)
Query: 30 ILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQ----NHTRSSPSKRPLSILFQ 78
++GPSG GKST + L+ GF++ G I+L+G ++ + ++FQ
Sbjct: 34 LIGPSGCGKSTFIRTLNRMNDLIPGFRH--EGHIYLDGVDIYDPAVDVVELRKKVGMVFQ 91
Query: 79 ENNLFSHLTVWQNIALGIAPNLRLDH-YQHAQVKQMLEKVFL----EDFFNRFPSQMSGG 133
+ N F +++ N+A G+ + D + +V++ L+ L +D ++ +SGG
Sbjct: 92 KPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGG 150
Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDS 193
Q+QR+ +AR + ++L+DEP + DP +I L+ ++ + T+++++HN++ +
Sbjct: 151 QQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL--KEDYTIVIVTHNMQQA 208
Query: 194 MQIATRFIVIAGGQIVYDGDPDRL 217
+++ G+I+ G D++
Sbjct: 209 TRVSKYTSFFLNGEIIESGLTDQI 232
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 72.6 bits (178), Expect = 8e-14
Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 8/177 (4%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQE 79
F V ++G +G+GKSTL + GF G I + GQ TR + K ++ + Q
Sbjct: 28 FTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQP-TRQALQKNLVAYVPQS 86
Query: 80 NNL-FSHLTVWQNIAL----GIAPNLRL-DHYQHAQVKQMLEKVFLEDFFNRFPSQMSGG 133
+ +S + +++ + G LR V L +V + +F +R ++SGG
Sbjct: 87 EEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGG 146
Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNL 190
Q++RV LAR + +Q ++LLDEPF D I+ LL+++ DE + T+L+ +HNL
Sbjct: 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGK-TMLVSTHNL 202
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 72.6 bits (178), Expect = 9e-14
Identities = 55/212 (25%), Positives = 103/212 (48%), Gaps = 37/212 (17%)
Query: 30 ILGPSGAGKST-------LLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPL----SILFQ 78
I+GPSG GKST ++ L+ K T G I QN S S L ++FQ
Sbjct: 55 IIGPSGCGKSTYIKTLNRMVELVPSVK--TTGKILYRDQNIFDKSYSVEELRTNVGMVFQ 112
Query: 79 ENNLFSHLTVWQNIALG-----IAPNLRLDHYQHAQVKQMLEKVF--------LEDFFNR 125
+ N F +++ N+ G I LD +++EK L+D +
Sbjct: 113 KPNPFPK-SIYDNVTYGPKIHGIKDKKTLD--------EIVEKSLRGAAIWDELKDRLHD 163
Query: 126 FPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLM 185
+SGGQ+QR+ +ARCL + ++L+DEP + DP ++ L++++ ++ ++++
Sbjct: 164 NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL--KKDYSIII 221
Query: 186 ISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217
++HN++ + +I+ + G + D D++
Sbjct: 222 VTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 72.0 bits (177), Expect = 1e-13
Identities = 57/215 (26%), Positives = 112/215 (52%), Gaps = 25/215 (11%)
Query: 21 QVNKAERIVILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHTRSSPS---- 69
+ + + ++GPSG GKST L L+ K G + L+GQ+ +S
Sbjct: 25 DIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK--IEGEVLLDGQDIYKSDIDVNQL 82
Query: 70 KRPLSILFQENNLFSHLTVWQNIAL-----GIAPNLRLDHYQHAQVKQ--MLEKVFLEDF 122
++ + ++FQ+ N F ++++ N+A GI +LD +K + ++V +D
Sbjct: 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEV--KDR 139
Query: 123 FNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLT 182
+ +SGGQ+QR+ +AR L + +LL+DEP + DP +I L++++ ++ T
Sbjct: 140 LKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL--KKDYT 197
Query: 183 LLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217
+++++HN++ + +I+ + G+IV GD L
Sbjct: 198 IVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232
>gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 72.0 bits (176), Expect = 1e-13
Identities = 51/192 (26%), Positives = 95/192 (49%), Gaps = 19/192 (9%)
Query: 20 FQVNKAERIVILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQN----HTRSSP 68
++ + I +GPSG GKSTLL L+ G K G + +N S
Sbjct: 41 LKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAK--VEGRLLYRDRNIYDSQINSVK 98
Query: 69 SKRPLSILFQENNLFSHLTVWQNIALGIAPNL---RLDHYQHAQVKQMLEKVFLEDFFNR 125
+R + ++FQ N F ++++NIA N LD +++ ++D
Sbjct: 99 LRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKE 157
Query: 126 FPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLM 185
+ +SGGQ+QR+ +AR + + +LL+DEP + DP ++ L ++ + Q T++M
Sbjct: 158 KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL--KEQYTIIM 215
Query: 186 ISHNLEDSMQIA 197
++HN++ + ++A
Sbjct: 216 VTHNMQQASRVA 227
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 72.0 bits (177), Expect = 1e-13
Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 22/196 (11%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNH----TRSSPSK----R 71
VN E + + GPSGAGKSTLL + P G I + + ++SP + R
Sbjct: 29 LTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVR 88
Query: 72 PLSILFQENNL-----FSHLTVWQN--IALGIAPNLRLDHYQHAQVKQMLEKVFL-EDFF 123
+I + L S L V + G+ A+ +++L ++ + E +
Sbjct: 89 RKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREA-----ARARARELLARLNIPERLW 143
Query: 124 NRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183
+ P+ SGG++QRV +AR I PILLLDEP A D A R ++ L+ + R L
Sbjct: 144 HLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEA-KARGAAL 202
Query: 184 LMISHNLEDSMQIATR 199
+ I H+ E +A R
Sbjct: 203 IGIFHDEEVRELVADR 218
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 71.7 bits (176), Expect = 1e-13
Identities = 63/221 (28%), Positives = 105/221 (47%), Gaps = 30/221 (13%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLM--AGFKYP---TRGSIFLNGQN----HTRSSPS 69
DF N E ++GPSG+GKSTLL + P GSI NG N T +
Sbjct: 27 DFYPN--EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL 84
Query: 70 KRPLSILFQENNLFSHLTVWQNIALGIAPN-----LRLDHYQHAQVKQ--MLEKVFLEDF 122
++ + ++FQ+ N F +++++N+ G+ LD +K + ++V +D
Sbjct: 85 RKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV--KDR 141
Query: 123 FNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDP---ALRHEILGLLKQVCDER 179
+ +SGGQ+QRV +AR L I+LLDEP + DP E L LK
Sbjct: 142 LHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD----- 196
Query: 180 QLTLLMISHNLEDSMQIATRFIVIAGGQIV-YDGDPDRLMN 219
T+L+++ +++ + +I+ R G ++ Y+ MN
Sbjct: 197 DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237
>gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 71.9 bits (176), Expect = 1e-13
Identities = 56/216 (25%), Positives = 106/216 (49%), Gaps = 23/216 (10%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHTRSSPS-- 69
+ K ++GPSG GKST L L+ + + G I G N S+ +
Sbjct: 41 SMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR--SEGEILYEGLNILDSNINVV 98
Query: 70 --KRPLSILFQENNLFSHLTVWQNI--ALGIAPNLRLDHYQHAQVKQMLEKVFL----ED 121
+R + ++FQ+ N F +++ NI AL A R V++ L K L +D
Sbjct: 99 NLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEI-VEESLTKAALWDEVKD 156
Query: 122 FFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQL 181
+ +SGGQ+QR+ +AR L + +LLLDEP + DP +I L+ ++ + +
Sbjct: 157 RLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL--KEEY 214
Query: 182 TLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217
++++++HN++ +++++ R G +V +++
Sbjct: 215 SIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 71.3 bits (175), Expect = 2e-13
Identities = 61/211 (28%), Positives = 107/211 (50%), Gaps = 20/211 (9%)
Query: 20 FQVNKAERIVILGPSGAGKS-TLLSLMAGFKYPTR---GSIFLNGQNHTRSSPSKR---- 71
+ V + E + I+G SG+GKS + L++M YP R + NGQ+ R S +R
Sbjct: 28 YSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLV 87
Query: 72 --PLSILFQE--NNLFSHLTVWQNIALGIAPNL---RLDHYQHAQVKQMLEKVFLEDFFN 124
++++FQ+ +L TV I I + + Q A +L +V + D +
Sbjct: 88 GAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRA--IDLLNQVGIPDPAS 145
Query: 125 R---FPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQL 181
R +P Q+SGG QRV +A + + +L+ DEP D ++ +I+ LL ++ + +
Sbjct: 146 RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENM 205
Query: 182 TLLMISHNLEDSMQIATRFIVIAGGQIVYDG 212
L++I+H+L + A + IV+ GQ+V G
Sbjct: 206 ALVLITHDLALVAEAAHKIIVMYAGQVVETG 236
>gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 71.4 bits (175), Expect = 2e-13
Identities = 58/213 (27%), Positives = 112/213 (52%), Gaps = 26/213 (12%)
Query: 30 ILGPSGAGKSTLL---SLMAGFKYPTR--GSIFLNGQNHTRSSPS----KRPLSILFQEN 80
++GPSG GKST L + M R G + G+N + +R + ++FQ+
Sbjct: 70 MIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKP 129
Query: 81 NLFSHLTVWQNIALGIAPNLRLDHYQ---HAQVKQMLEKVFL----EDFFNRFPSQMSGG 133
N F +++ N+A G L++ Y +V++ L + L +D + +SGG
Sbjct: 130 NPFPK-SIYDNVAYG----LKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGG 184
Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDS 193
Q+QR+ +AR + ++L+DEP + DP +I L++++ +E T+++++HN++ +
Sbjct: 185 QQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE--YTVVIVTHNMQQA 242
Query: 194 MQIATRFIV-IAGGQIVYDGDPDRLMNGLIPES 225
+I+ + V + GG++V D D++ PES
Sbjct: 243 ARISDKTAVFLTGGELVEFDDTDKIFEN--PES 273
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 70.6 bits (173), Expect = 3e-13
Identities = 60/223 (26%), Positives = 93/223 (41%), Gaps = 23/223 (10%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAG-FKYPT-------RGSIFLNGQNHTRSSPSK 70
++ +LG +GAGKSTLL +AG G + LNG+ +
Sbjct: 21 SLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80
Query: 71 --RPLSILFQENNLFSHLTVWQNIALGIAPNLR----LDHYQHAQVKQMLEKVFLEDFFN 124
R ++L Q + + + LG P+ R L H Q L
Sbjct: 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVG 140
Query: 125 RFPSQMSGGQRQRVALARCLIRQKP---------ILLLDEPFAVFDPALRHEILGLLKQV 175
R + +SGG+ RV AR L + P LLLDEP A D A +H +L ++++
Sbjct: 141 RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRL 200
Query: 176 CDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLM 218
+ L +L I H+ + + A R ++A G IV G P ++
Sbjct: 201 ARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 70.4 bits (172), Expect = 3e-13
Identities = 58/214 (27%), Positives = 111/214 (51%), Gaps = 26/214 (12%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLSILF 77
F V+ +E++ ++G +GAGKS++L+ + +G I ++ + + + +R LSI+
Sbjct: 1257 FFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIP 1316
Query: 78 QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP---------- 127
Q LFS + I P + A + + LE+ ++D +R P
Sbjct: 1317 QSPVLFS-----GTVRFNIDP---FSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368
Query: 128 -SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDE-RQLTLLM 185
S GQRQ ++LAR L+R+ IL+LDE A D +R + L + + + +E + T+L+
Sbjct: 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVD--VRTDSL-IQRTIREEFKSCTMLV 1425
Query: 186 ISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
I+H L +++ + +V++ GQ++ P L++
Sbjct: 1426 IAHRL-NTIIDCDKILVLSSGQVLEYDSPQELLS 1458
Score = 43.0 bits (101), Expect = 6e-05
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 31/154 (20%)
Query: 28 IVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRP-LSILFQENNLFSHL 86
+ I+G +G GK++L+S M G S + R S + P +S +F
Sbjct: 646 VAIVGGTGEGKTSLISAMLGELSHAETSSVV-----IRGSVAYVPQVSWIFNA------- 693
Query: 87 TVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQ-----------MSGGQR 135
TV +NI G ++ + + ++ L+ + P + +SGGQ+
Sbjct: 694 TVRENILFG-------SDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQK 746
Query: 136 QRVALARCLIRQKPILLLDEPFAVFDPALRHEIL 169
QRV++AR + I + D+P + D + H++
Sbjct: 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF 780
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 70.4 bits (173), Expect = 4e-13
Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 29/188 (15%)
Query: 30 ILGPSGAGKSTLLSL---MAGFKYP---TRGSIFLNGQNHTRSSPSKRPLSIL------- 76
+GPSG GKSTLL M YP G I L+G+N K+ +++L
Sbjct: 44 FIGPSGCGKSTLLRTFNRMYEL-YPEQRAEGEILLDGENIL---TPKQDIALLRAKVGMV 99
Query: 77 FQENNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQVKQMLEKVFL----EDFFNRFPSQMS 131
FQ+ F ++++ NIA G+ +L + +V+ L K L +D ++ +S
Sbjct: 100 FQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLS 158
Query: 132 GGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLE 191
GGQ+QR+ +AR + + +LLLDEP + DP I L+ ++ ++ T+++++HN
Sbjct: 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL--KQDYTVVIVTHN-- 214
Query: 192 DSMQIATR 199
MQ A R
Sbjct: 215 --MQQAAR 220
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 70.2 bits (173), Expect = 5e-13
Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 24/189 (12%)
Query: 21 QVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILF--Q 78
++ + E I I+GP+G GK+T L+AG P G + L I + Q
Sbjct: 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQ 407
Query: 79 ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRV 138
TV + I +L +Y+ ++++ + LE ++ +SGG+ QRV
Sbjct: 408 YIKPDYDGTVEDLLR-SITDDLGSSYYKS----EIIKPLQLERLLDKNVKDLSGGELQRV 462
Query: 139 ALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQ--I 196
A+A CL R + LLDEP A D R + ++++ +ER+ T L++ H++ M I
Sbjct: 463 AIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI--YMIDYI 520
Query: 197 ATRFIVIAG 205
+ R +V G
Sbjct: 521 SDRLMVFEG 529
Score = 42.1 bits (100), Expect = 1e-04
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 37/150 (24%)
Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHLTVW 89
ILGP+G GK+T + +++G P G PS + F+ L ++
Sbjct: 104 ILGPNGIGKTTAVKILSGELIPNLGD--------YEEEPSWDEVLKRFRGTELQNYF--- 152
Query: 90 QNIALGIAPNLRLDH---YQHA-------QVKQMLEKV-------------FLEDFFNRF 126
+ + G +++ H Y +V+++L+KV LE+ +R
Sbjct: 153 KKLYNG---EIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRD 209
Query: 127 PSQMSGGQRQRVALARCLIRQKPILLLDEP 156
S++SGG+ QRVA+A L+R DEP
Sbjct: 210 ISELSGGELQRVAIAAALLRDADFYFFDEP 239
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 70.1 bits (171), Expect = 5e-13
Identities = 54/200 (27%), Positives = 105/200 (52%), Gaps = 31/200 (15%)
Query: 13 NLKMQF-DFQVNKAERIVILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHT 64
N+ M F + Q+ I+GPSG GKSTLL +++G + G++ L+ +N
Sbjct: 22 NINMDFPERQIT-----AIIGPSGCGKSTLLRALNRMNDIVSGARL--EGAVLLDNEN-- 72
Query: 65 RSSPS------KRPLSILFQENNLFSHLTVWQNIA-----LGIAPNLRLDHYQHAQVKQM 113
SP+ ++ + ++FQ+ N F +++ N+A LG RLD ++Q
Sbjct: 73 IYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQA 131
Query: 114 LEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLK 173
++D ++ +SGGQ+QR+ +AR L + ++L+DEP + DP I L++
Sbjct: 132 ALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQ 191
Query: 174 QVCDERQLTLLMISHNLEDS 193
++ ++ T+ +++HN++ +
Sbjct: 192 EL--KQNYTIAIVTHNMQQA 209
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 69.9 bits (171), Expect = 5e-13
Identities = 62/223 (27%), Positives = 115/223 (51%), Gaps = 32/223 (14%)
Query: 30 ILGPSGAGKSTLLSLMAGFKYPTR-----GSIFLNGQNHTRSSPS----KRPLSILFQEN 80
++GPSG GKST L + + GS+ L+GQ+ + + ++ + ++FQ
Sbjct: 76 LIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSP 135
Query: 81 NLFSHLTVWQNIALG----------IAPNL--RLDHYQHAQ-VKQMLEKVFLEDFFN-RF 126
N F ++ +NI+ G + L R D + V++ L + L D N R
Sbjct: 136 NPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194
Query: 127 PSQ---MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183
+SGGQ+QR+ +ARCL ++L+DEP + DP +I L++++ +E T+
Sbjct: 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE--YTV 252
Query: 184 LMISHNLEDSMQIATRFIV-IAGGQIVYDGDPDRLMNGLIPES 225
++++HN++ + +I+ + V + GG++V D D++ PES
Sbjct: 253 VVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFEN--PES 293
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 69.4 bits (170), Expect = 7e-13
Identities = 55/243 (22%), Positives = 114/243 (46%), Gaps = 30/243 (12%)
Query: 2 IKLDHLIYCYDNLKMQFDFQVNKAERIV--ILGPSGAGKSTLLSLMAGFKYPT-----RG 54
I + L Y + D +N R V +GPSG GKST+L + G
Sbjct: 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEG 64
Query: 55 SIFLNGQNHTRSSPS----KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQV 110
+ L+G++ +R + ++FQ N F +++ N+ G+ N +
Sbjct: 65 EVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLN---GVRNKKDL 121
Query: 111 KQMLEKVF--------LEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDP 162
+++EK ++D ++ +SGGQ+QR+ +AR + + +LL+DEP + DP
Sbjct: 122 DELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP 181
Query: 163 ALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIA--TRFIVIAG----GQIVYDGDPDR 216
I L+ ++ ++ T+++++HN++ + +++ T F + G++V D ++
Sbjct: 182 ISTLAIEDLINEL--KQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEK 239
Query: 217 LMN 219
+ +
Sbjct: 240 IFS 242
>gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 69.2 bits (169), Expect = 9e-13
Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 25/186 (13%)
Query: 30 ILGPSGAGKSTLLSLMAGFK--YP---TRGSIFLNGQN----HTRSSPSKRPLSILFQEN 80
I+GPSG GKST L + P T G++ +G++ T ++ + ++FQ+
Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129
Query: 81 NLFSHLTVWQNIALGIAPNLR--LDHYQHAQ-VKQMLEKVFL----EDFFNRFPSQMSGG 133
N F +++ NIA G P L D Q + V++ L K L D ++ +SGG
Sbjct: 130 NPFPK-SIFDNIAYG--PRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGG 186
Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDS 193
Q+QR+ +AR L + ILLLDEP + DP +I L++++ T+++++HN
Sbjct: 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL--RGSYTIMIVTHN---- 240
Query: 194 MQIATR 199
MQ A+R
Sbjct: 241 MQQASR 246
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 69.2 bits (170), Expect = 9e-13
Identities = 55/226 (24%), Positives = 104/226 (46%), Gaps = 37/226 (16%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN------HTRSSPSKRP 72
F + E + I+G SG+GK+TLL+ ++ P G + ++ + S +R
Sbjct: 26 SFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRR 85
Query: 73 LSILFQENNLFSHLTVW----QNIALGIAPNL--------RL-----DHYQH--AQVKQM 113
L T W Q+ G+ + RL HY A
Sbjct: 86 L-----------LRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDW 134
Query: 114 LEKVFLE-DFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLL 172
LE+V ++ + P+ SGG +QR+ +AR L+ ++ +DEP D +++ +L LL
Sbjct: 135 LERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLL 194
Query: 173 KQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLM 218
+ + E L +++++H+L + +A R +V+ G++V G D+++
Sbjct: 195 RGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVL 240
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 68.8 bits (168), Expect = 1e-12
Identities = 52/210 (24%), Positives = 110/210 (52%), Gaps = 33/210 (15%)
Query: 30 ILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHTRSSPS----KRPLSILFQ 78
++GPSG GKST L L++ K G + L+G+N ++ + ++FQ
Sbjct: 35 LIGPSGCGKSTFLRCLNRMNDLISNVK--IEGEVLLDGKNIYDKDVDVVELRKRVGMVFQ 92
Query: 79 ENNLFSHLTVWQNIALG-----IAPNLRLDHYQHAQVKQMLEKVFL----EDFFNRFPSQ 129
+ N F ++++ N+A G I LD V+ L+K L +D + +
Sbjct: 93 KPNPFP-MSIYDNVAYGPRIHGIKDKKELDKI----VEWALKKAALWDEVKDDLKKSALK 147
Query: 130 MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189
+SGGQ+QR+ +AR + + ++L+DEP + DP +I L+ ++ +++ T+++++HN
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL--KKEYTIVIVTHN 205
Query: 190 LEDSMQIA--TRFIVIAGGQIVYDGDPDRL 217
++ + +++ T F ++ G ++ +++
Sbjct: 206 MQQASRVSDYTAFFLM--GDLIEFNKTEKI 233
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 68.1 bits (166), Expect = 2e-12
Identities = 60/234 (25%), Positives = 111/234 (47%), Gaps = 18/234 (7%)
Query: 6 HLIYCYDNLKMQFDFQVNKAERIVILGPSGAGKSTLL---SLMAGFKYPTRGSIFLNGQN 62
+L Y + Q+ + + ++G SG GKST L + M G + + G++
Sbjct: 9 NLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKD 68
Query: 63 HTRSS--PSKRPLSILFQENNLFSHLTVWQNIALGIAPNL----RLDHYQHAQVKQMLEK 116
++ + ++FQ+ N+F ++++NI+ AP L + + A V L+K
Sbjct: 69 VKNQDVVALRKNVGMVFQQPNVFVK-SIYENISY--APKLHGMIKNKDEEEALVVDCLQK 125
Query: 117 VFL----EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLL 172
V L +D + +SGGQ+QR+ +AR L + +LLLDEP + DP I LL
Sbjct: 126 VGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL 185
Query: 173 KQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGLIPEST 226
K++ L+++M++HN++ ++A G+++ G+ E T
Sbjct: 186 KEL--SHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEKT 237
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 67.2 bits (164), Expect = 3e-12
Identities = 53/216 (24%), Positives = 113/216 (52%), Gaps = 23/216 (10%)
Query: 19 DFQVNKAERIVILGPSGAGKSTL---LSLMAGFKYPTR--GSIFLNGQNHTRSSPS---- 69
+ + + E I+GPSG GKST L+LM + G + NG N +
Sbjct: 32 NLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVEL 91
Query: 70 KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEK-----VFLEDFFN 124
++ + ++FQ+ N F +++ N+A G P + + ++++++EK ++ +
Sbjct: 92 RKNIGMVFQKGNPFPQ-SIFDNVAYG--PRIHGTKNKK-KLQEIVEKSLKDVALWDEVKD 147
Query: 125 RFPSQ---MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQL 181
R +Q +SGGQ+QR+ +AR L +LL+DEP + DP +I L+ ++ + +
Sbjct: 148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KY 205
Query: 182 TLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217
T+++++HN++ + +++ + G++V D +++
Sbjct: 206 TIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 65.8 bits (161), Expect = 9e-12
Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 39/204 (19%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHTRSS---- 67
++ K +GPSG GKSTLL L+ + G I L+GQN
Sbjct: 45 SMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR--IEGEIRLDGQNIYDKKVDVA 102
Query: 68 PSKRPLSILFQENNLFSHLTVWQNIALG-----IAPNLRLDHYQHAQVKQMLEKVFL--- 119
+R + ++FQ N F ++++N+ G I LD V++ L L
Sbjct: 103 ELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDE----AVERSLRGAALWDE 157
Query: 120 -EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDP---ALRHEILGLLKQV 175
+D + +SGGQ+QR+ +AR + + +LLLDEP + DP E++ LK
Sbjct: 158 VKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS- 216
Query: 176 CDERQLTLLMISHNLEDSMQIATR 199
+ T+++++HN MQ A R
Sbjct: 217 ----KYTIVIVTHN----MQQAAR 232
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 65.4 bits (159), Expect = 1e-11
Identities = 57/195 (29%), Positives = 105/195 (53%), Gaps = 16/195 (8%)
Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS----KRPLSILFQ--ENNLF 83
++G +G GKSTL ++G P +G++ G+ S ++ ++ +FQ E +F
Sbjct: 32 LVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91
Query: 84 SHLTVWQNIALGIAPNLRLDHYQHAQV-KQMLEKVFLED--FFNRFPSQ-MSGGQRQRVA 139
+ +I IA +LR A++ +++ E + L D F P Q +S GQ++RVA
Sbjct: 92 -----YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVA 146
Query: 140 LARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATR 199
+A L+ Q LLLDEP A DPA R +++ +++++ + +++ SH+++ +I+
Sbjct: 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGN-HVIISSHDIDLIYEISDA 205
Query: 200 FIVIAGGQIVYDGDP 214
V+ GQI+ G P
Sbjct: 206 VYVLRQGQILTHGAP 220
>gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 65.5 bits (160), Expect = 1e-11
Identities = 56/197 (28%), Positives = 100/197 (50%), Gaps = 25/197 (12%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLL-SL--MAGFKYPTR--GSIFLNGQNHTRSSPS---- 69
D Q K + ++GPSG+GKST L SL M R G I G + R +
Sbjct: 40 DMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEM 99
Query: 70 KRPLSILFQENNLFSHLTVWQNIAL-----GIAPNLRLDHYQHAQVKQ--MLEKVFLEDF 122
++ + ++FQ N F+ ++++NI G+ LD +KQ + ++V +D
Sbjct: 100 RKHIGMVFQRPNPFAK-SIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV--KDD 156
Query: 123 FNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLT 182
++ +SGGQ+QR+ +AR + + ILL+DEP + DP ++ + ++ ++ T
Sbjct: 157 LHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL--KKNYT 214
Query: 183 LLMISHNLEDSMQIATR 199
+++++HN MQ A R
Sbjct: 215 IIIVTHN----MQQAAR 227
>gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved.
Length = 1522
Score = 65.4 bits (159), Expect = 1e-11
Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 24/210 (11%)
Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLSILFQE 79
++ E++ I+G +GAGKS+L + G I ++G N + + ++I+ Q+
Sbjct: 1309 IHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQD 1368
Query: 80 NNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQM--------- 130
LFS ++ + + P Y +V LE L+ F + P ++
Sbjct: 1369 PVLFS-----GSLRMNLDP---FSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGE 1420
Query: 131 --SGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISH 188
S GQRQ V LAR L+R+ IL+LDE A D + I ++ ++ T+L I+H
Sbjct: 1421 NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFED--CTVLTIAH 1478
Query: 189 NLEDSMQIATRFIVIAGGQIVYDGDPDRLM 218
L M TR IV+ G++ G P L+
Sbjct: 1479 RLNTIMDY-TRVIVLDKGEVAEFGAPSNLL 1507
Score = 57.3 bits (138), Expect = 3e-09
Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 44/208 (21%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQ 78
F + + + ++G G GKS+LLS + G + + G S + P Q
Sbjct: 658 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------SVAYVPQQAWIQ 711
Query: 79 ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPS---------- 128
++L +NI G A L +YQ Q+LE L PS
Sbjct: 712 NDSL------RENILFGKA--LNEKYYQ-----QVLEACALLPDLEILPSGDRTEIGEKG 758
Query: 129 -QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEIL-------GLLKQVCDERQ 180
+SGGQ+QRV+LAR + I L D+P + D + I G+LK
Sbjct: 759 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNK----- 813
Query: 181 LTLLMISHNLEDSMQIATRFIVIAGGQI 208
T ++++H + Q+ IV++GG+I
Sbjct: 814 -TRILVTHGISYLPQVDV-IIVMSGGKI 839
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 65.2 bits (159), Expect = 1e-11
Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 31/188 (16%)
Query: 30 ILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQN--HTRSSPS--KRPLSILFQ 78
++GPSG GKST+L L+ G +G + +G + R P +R + ++FQ
Sbjct: 44 LIGPSGCGKSTVLRSLNRMNDLIEGCSL--KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQ 101
Query: 79 ENNLFSHLTVWQNIALGIAPNLRLDHYQ---HAQVKQMLEKVFL----EDFFNRFPSQMS 131
+ N F ++++NIA G R++ Y V++ L K + +D N +S
Sbjct: 102 QPNPFPK-SIYENIAFGA----RINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLS 156
Query: 132 GGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLE 191
GGQ+QR+ +AR + + ++L+DEP + DP +I + ++ ++ T+++++HN
Sbjct: 157 GGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL--KKNFTIVIVTHN-- 212
Query: 192 DSMQIATR 199
MQ A R
Sbjct: 213 --MQQAVR 218
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 65.1 bits (158), Expect = 1e-11
Identities = 55/222 (24%), Positives = 109/222 (49%), Gaps = 39/222 (17%)
Query: 16 MQFDFQVNKAERIVILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHTRSSP 68
+ D + NK +GPSG GKST L L+ G + G I+ G N TRS
Sbjct: 101 LNLDIKRNKV--TAFIGPSGCGKSTFLRNLNQLNDLIEGTSH--EGEIYFLGTN-TRSKK 155
Query: 69 S-----KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVF----- 118
+ + ++FQ+ F ++++ N+A G N D +++LEK+
Sbjct: 156 ISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRNNGIND-------RKILEKIVEKSLK 207
Query: 119 -------LEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGL 171
++D ++ + +SGGQ+QR+ +AR + + +LL+DEP + DP +I L
Sbjct: 208 SAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL 267
Query: 172 LKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGD 213
+ ++ +++ ++++++H++ + +I+ + G I G+
Sbjct: 268 ILEL--KKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307
>gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 65.1 bits (159), Expect = 2e-11
Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 25/211 (11%)
Query: 19 DFQVNKAERIVILGPSGAGKS-----TLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPL 73
+ + + ++G SG+GKS L L AG + T G + L+G+ + R +
Sbjct: 23 SLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQ-TAGRVLLDGKPVAPCALRGRKI 81
Query: 74 SILFQE--------NNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLED---F 122
+ + Q + + +H +ALG + A + LE V LE+
Sbjct: 82 ATIMQNPRSAFNPLHTMHTH-ARETCLALGKPADD-------ATLTAALEAVGLENAARV 133
Query: 123 FNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLT 182
+P +MSGG QR+ +A L+ + P ++ DEP D + IL LL+ + +R L
Sbjct: 134 LKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALG 193
Query: 183 LLMISHNLEDSMQIATRFIVIAGGQIVYDGD 213
+L+++H++ ++A V++ G+IV GD
Sbjct: 194 MLLVTHDMGVVARLADDVAVMSHGRIVEQGD 224
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 63.0 bits (154), Expect = 5e-11
Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 44/165 (26%)
Query: 27 RIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHL 86
+I +LG +GAGKSTLL +MAG G R +P + + L QE L
Sbjct: 33 KIGVLGLNGAGKSTLLRIMAGVDKEFNGE--------ARPAPGIK-VGYLPQEPQLDPTK 83
Query: 87 TVWQNIALGIAPNLR-LDHYQH---------AQVKQMLEKVF-LEDFFN----------- 124
TV +N+ G+A LD + A + +L + L++ +
Sbjct: 84 TVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKL 143
Query: 125 -------RFP------SQMSGGQRQRVALARCLIRQKPILLLDEP 156
R P +++SGG+R+RVAL R L+ + +LLLDEP
Sbjct: 144 EIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188
Score = 56.9 bits (138), Expect = 4e-09
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 41/160 (25%)
Query: 11 YDNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLN--------GQN 62
D+L F++ + ++GP+GAGKSTL ++ G + P G+I + Q+
Sbjct: 338 IDDL----SFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQS 393
Query: 63 HTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDF 122
P+K TVW+ I+ G LD Q + ++ + ++ F
Sbjct: 394 RDALDPNK----------------TVWEEISGG------LDIIQLGKR-EVPSRAYVGRF 430
Query: 123 -F-----NRFPSQMSGGQRQRVALARCLIRQKPILLLDEP 156
F + Q+SGG+R RV LA+ L +LLLDEP
Sbjct: 431 NFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEP 470
>gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 63.0 bits (154), Expect = 6e-11
Identities = 59/197 (29%), Positives = 86/197 (43%), Gaps = 55/197 (27%)
Query: 13 NLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI----------FLNGQN 62
L F QV + ++I ++GP+G GK+TLL LM G G I F Q+
Sbjct: 333 QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYF--DQH 390
Query: 63 HTRSSPSKRPLSILFQENNLFSHLTVWQNIALG---IAPNLRLDHYQHAQVKQMLEKVFL 119
P K TV N+A G + N R H +L +L
Sbjct: 391 RAELDPEK----------------TVMDNLAEGKQEVMVNGRPRH--------VLG--YL 424
Query: 120 EDFFNRFPSQ--------MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGL 171
+DF F + +SGG+R R+ LAR ++ +L+LDEP D E L L
Sbjct: 425 QDFL--FHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV----ETLEL 478
Query: 172 LKQVCDERQLTLLMISH 188
L+++ D Q T+L++SH
Sbjct: 479 LEELLDSYQGTVLLVSH 495
Score = 47.6 bits (114), Expect = 3e-06
Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 57/178 (32%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAG--------FKY------------PTR---GS 55
+ + ER+ ++G +GAGKSTL+ ++ G Y P R G+
Sbjct: 23 ELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGT 82
Query: 56 IF------LNGQ-----------NHTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAP 98
++ + Q + + PS++ L+ L + H +WQ
Sbjct: 83 VYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQ-------- 134
Query: 99 NLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEP 156
L+ ++ ++L ++ L+ + S +SGG ++ AL R L+ +LLLDEP
Sbjct: 135 ---LE----NRINEVLAQLGLDP--DAALSSLSGGWLRKAALGRALVSNPDVLLLDEP 183
>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 62.1 bits (151), Expect = 1e-10
Identities = 64/216 (29%), Positives = 113/216 (52%), Gaps = 32/216 (14%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLSILF 77
F+++ +E++ I+G +GAGKS++L+ + RG I ++G + ++ ++ L I+
Sbjct: 1260 FEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIP 1319
Query: 78 QENNLFSHLTVWQNIALGIAPNLRLDHY-QH--AQVKQMLEKVFLEDFFNRFP------- 127
Q LFS TV N LD + +H A + + LE+ L+D R
Sbjct: 1320 QAPVLFSG-TVRFN----------LDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEV 1368
Query: 128 ----SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDE-RQLT 182
S GQRQ ++LAR L+R+ IL+LDE A D +R + L + K + +E + T
Sbjct: 1369 SEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVD--VRTDAL-IQKTIREEFKSCT 1425
Query: 183 LLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLM 218
+L+I+H L +++ R +V+ G++V P+ L+
Sbjct: 1426 MLIIAHRL-NTIIDCDRILVLDAGRVVEFDTPENLL 1460
Score = 37.4 bits (87), Expect = 0.003
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 20/99 (20%)
Query: 130 MSGGQRQRVALARCLIRQKPILLLDEPFA---------VFDPALRHEILGLLKQVCDERQ 180
+SGGQ+QRV++AR + + + D+P + VFD ++ E+ R
Sbjct: 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL----------RG 790
Query: 181 LTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
T +++++ L Q+ R I++ G I +G + L N
Sbjct: 791 KTRVLVTNQLHFLSQV-DRIILVHEGMIKEEGTYEELSN 828
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 61.9 bits (151), Expect = 1e-10
Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 18/149 (12%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ----NHTRSSPSKRPLSI 75
F + ++G +GAGKSTLL +++G P GSI ++GQ T ++ + ++I
Sbjct: 25 FDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA-GVAI 83
Query: 76 LFQENNLFSHLTVWQNIALGIAPNLR--LDHYQ-HAQVKQMLEKVFLE-DFFNRFPSQ-- 129
++QE +L +TV +N+ LG P+ ++ + + ++ LE + ++ D P
Sbjct: 84 IYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----PDTPL 138
Query: 130 --MSGGQRQRVALARCLIRQKPILLLDEP 156
+S GQRQ V +A+ L R ++ DEP
Sbjct: 139 KYLSIGQRQMVEIAKALARNARVIAFDEP 167
Score = 56.8 bits (138), Expect = 4e-09
Identities = 54/231 (23%), Positives = 103/231 (44%), Gaps = 19/231 (8%)
Query: 14 LKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSP--SKR 71
L+ F V E + + G GAG+S L+ L+ G T G ++L+G+ SP + R
Sbjct: 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIR 327
Query: 72 PLSILFQENN----LFSHLTVWQNIALGIAPN-LRLDHYQHAQVKQMLEKVFLEDFFNRF 126
+L E+ + +V NI + + LR + + + F+ +
Sbjct: 328 AGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT 387
Query: 127 PS------QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQ 180
PS +SGG +Q+ L R L ++LLDEP D +HEI ++ ++ +
Sbjct: 388 PSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELA-AQG 446
Query: 181 LTLLMISHNLEDSMQIATRFIVIAGGQIV-----YDGDPDRLMNGLIPEST 226
+ +L +S +L + + +A R +V+ G+I + ++ +P ++
Sbjct: 447 VAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQATERQALSLALPRTS 497
>gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PubMed:12554644) or associated with the
membrane (PubMed:11943156). The SUF system also includes
a cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA.
Length = 243
Score = 61.9 bits (151), Expect = 1e-10
Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 25/223 (11%)
Query: 18 FDFQVNKAERIVILGPSGAGKSTLLSLMAG-FKYP-TRGSIFLNGQNHTRSSPSKRP--- 72
+ V K E I+GP+G+GKSTL +AG Y T G+I GQ+ P +R
Sbjct: 19 VNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78
Query: 73 LSILFQ--------ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFL-EDFF 123
L + FQ N F + + L L + +K L + + E+F
Sbjct: 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDF-LKLLKAKLALLGMDEEFL 137
Query: 124 NRFPSQ-MSGGQRQRVALARCLIRQKPILLLDEPFAVFD-PALR--HEILGLLKQVCDER 179
NR ++ SGG+++R + + + + + +LDE + D AL+ E + L+ E
Sbjct: 138 NRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLR----EP 193
Query: 180 QLTLLMISHNLEDSMQIATRFI-VIAGGQIVYDGDPDRLMNGL 221
+ L+I+H I ++ V+ G+IV GD + L L
Sbjct: 194 DRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE-LAKEL 235
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 61.3 bits (149), Expect = 2e-10
Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 28 IVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHLT 87
+ +LGP+GAGKSTL+ ++ G P G I NG+ P K L LT
Sbjct: 33 LTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLP-------LT 85
Query: 88 VWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQ 147
V + + L P + + L++V + ++SGG+ QRV LAR L+ +
Sbjct: 86 VNRFLRL--RPGTK-----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNR 138
Query: 148 KPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSM 194
+L+LDEP D + + L+ Q+ E +LM+SH+L M
Sbjct: 139 PQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVM 185
>gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 60.9 bits (149), Expect = 3e-10
Identities = 47/167 (28%), Positives = 68/167 (40%), Gaps = 50/167 (29%)
Query: 28 IVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHLT 87
I +LG +GAGKSTLL +MAG G +P + + L QE L T
Sbjct: 36 IGVLGLNGAGKSTLLRIMAGVDKEFEGEARP--------APGIK-VGYLPQEPQLDPEKT 86
Query: 88 VWQNIALGIAPNLRL--------------DHYQHAQVKQMLEKVFLEDFFN--------- 124
V +N+ G+A D A + E L++ +
Sbjct: 87 VRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGE---LQEIIDAADAWDLDS 143
Query: 125 ---------RFP------SQMSGGQRQRVALARCLIRQKPILLLDEP 156
R P +++SGG+R+RVAL R L+ + +LLLDEP
Sbjct: 144 QLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEP 190
Score = 52.0 bits (126), Expect = 1e-07
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 38/144 (26%)
Query: 28 IV-ILGPSGAGKSTLLSLMAGFKYPTRGSIFLN--------GQNHTRSSPSKRPLSILFQ 78
IV I+GP+GAGKSTL ++ G + P G+I + Q+ P+K
Sbjct: 352 IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNK-------- 403
Query: 79 ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQ------MSG 132
TVW+ I+ G LD + ++ + ++ F + Q +SG
Sbjct: 404 --------TVWEEISGG------LDIIKVGNR-EIPSRAYVGRFNFKGGDQQKKVGVLSG 448
Query: 133 GQRQRVALARCLIRQKPILLLDEP 156
G+R R+ LA+ L + +LLLDEP
Sbjct: 449 GERNRLHLAKTLKQGGNVLLLDEP 472
>gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 60.7 bits (147), Expect = 3e-10
Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 16/148 (10%)
Query: 26 ERIVILGPSGAGKSTLLSLMAGFKYPT--RGSIFLNGQNHTRSSPSKRPLSILFQENNLF 83
E + +LGPSG+GKSTLL+ +AG G+I N + T+ + + Q++ L+
Sbjct: 95 EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK--QILKRTGFVTQDDILY 152
Query: 84 SHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDF----------FNRFPSQMSGG 133
HLTV + + LRL Q K ++ + + + N F +SGG
Sbjct: 153 PHLTVRETLVF--CSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGG 210
Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFD 161
+R+RV++A ++ +L+LDEP + D
Sbjct: 211 ERKRVSIAHEMLINPSLLILDEPTSGLD 238
>gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 60.0 bits (146), Expect = 5e-10
Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 21/204 (10%)
Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRP---LSILFQENNLFSHL 86
++G +GAGKST++ ++ G GSI G+ T + P + I+ QE NL L
Sbjct: 35 LVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL 94
Query: 87 TVWQNIALG---IAPNLRLDHYQ-HAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALAR 142
T+ +NI LG + R+D + +A+ ++L ++ L ++ ++S G++Q V +A+
Sbjct: 95 TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAK 154
Query: 143 CLIRQKPILLLDEPF-AVFD---PALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIAT 198
L + ++++DEP A+ D +L I L Q ++ ISH L++ +I
Sbjct: 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRG-----IVYISHRLKEIFEICD 209
Query: 199 RFIVIAGGQI-----VYDGDPDRL 217
V GQ V D D L
Sbjct: 210 DVTVFRDGQFIAEREVADLTEDSL 233
Score = 59.6 bits (145), Expect = 7e-10
Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 26/208 (12%)
Query: 20 FQVNKAERIVILGPSG---AGKSTLLSLMAGFKYPTRGSIFLNGQN-HTRSSPSKRPLSI 75
F + K E ILG SG AG++ L+ ++ G T G + L+G TRS I
Sbjct: 273 FTLRKGE---ILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329
Query: 76 LF-----QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDF---FN-RF 126
++ + + L ++V +N++L LR +K E+ + DF FN +
Sbjct: 330 VYISEDRKRDGLVLGMSVKENMSL---TALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT 386
Query: 127 PSQ------MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQ 180
PS +SGG +Q+VA+AR L+ + +L+LDEP D + EI L+ Q E
Sbjct: 387 PSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-G 445
Query: 181 LTLLMISHNLEDSMQIATRFIVIAGGQI 208
L+++++S + + + ++ R +V+ G+I
Sbjct: 446 LSIILVSSEMPEVLGMSDRILVMHEGRI 473
>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 58.9 bits (142), Expect = 1e-09
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 27/155 (17%)
Query: 73 LSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQ--- 129
SI+ QE LF+ +++++NI G R D VK+ + +++F P++
Sbjct: 1298 FSIVSQEPMLFN-MSIYENIKFGKEDATRED------VKRACKFAAIDEFIESLPNKYDT 1350
Query: 130 --------MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQL 181
+SGGQ+QR+A+AR L+R+ ILLLDE + D I + + D+
Sbjct: 1351 NVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADK 1410
Query: 182 TLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDR 216
T++ I+H +IA+ + +IV +PDR
Sbjct: 1411 TIITIAH------RIAS---IKRSDKIVVFNNPDR 1436
Score = 47.3 bits (112), Expect = 3e-06
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 108 AQVKQMLEKVFLEDFFNRFP-----------SQMSGGQRQRVALARCLIRQKPILLLDEP 156
++V + +KV + DF + P S++SGGQ+QR+++AR +IR IL+LDE
Sbjct: 547 SEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEA 606
Query: 157 FAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIV 202
+ D + + + + ++I+H L T F++
Sbjct: 607 TSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVL 652
Score = 33.1 bits (75), Expect = 0.058
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 2 IKLDHLIYCYDNLK-----MQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI 56
I+ ++ + YD K +F + + + +G SG GKST+L L+ PT G I
Sbjct: 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442
Query: 57 FLN 59
+N
Sbjct: 443 IIN 445
>gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 58.3 bits (141), Expect = 1e-09
Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 48/187 (25%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLN--------GQNHTRS-SPS 69
+F ++ RI ++GP+G GKST+L L++G P+ G++F + Q+H S
Sbjct: 529 NFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLS 588
Query: 70 KRPLSILFQ------ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFF 123
PL + + E L +HL + G+ NL L + M
Sbjct: 589 SNPLLYMMRCFPGVPEQKLRAHLG-----SFGVTGNLAL--------QPMY--------- 626
Query: 124 NRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFD-PALRHEILGLLKQVCDERQLT 182
+SGGQ+ RVA A+ ++ ILLLDEP D A+ I GL+ Q
Sbjct: 627 -----TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVL-----FQGG 676
Query: 183 LLMISHN 189
+LM+SH+
Sbjct: 677 VLMVSHD 683
Score = 43.3 bits (102), Expect = 5e-05
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 15/104 (14%)
Query: 118 FLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCD 177
F + + SGG R R+ALAR L + +LLLDEP D H +L L
Sbjct: 333 FTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD---LHAVLWL------ 383
Query: 178 ERQL-----TLLMISHNLEDSMQIATRFIVIAGGQIV-YDGDPD 215
E L T +++SH E + T + + G ++V Y GD D
Sbjct: 384 ETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYD 427
>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se.
Length = 1490
Score = 58.0 bits (140), Expect = 2e-09
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 47/213 (22%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQE 79
F V +R+ +LG +G+GKSTLLS + T G I ++G + S+ Q
Sbjct: 1240 FSVEGGQRVGLLGRTGSGKSTLLSALLRL-LSTEGEIQIDGVSWN---------SVTLQT 1289
Query: 80 NNLFSHLTVWQNIALGIAPN----------LRLDHYQH---AQVKQMLEKVFLEDFFNRF 126
W+ A G+ P LD Y+ ++ ++ E+V L+ +F
Sbjct: 1290 ---------WRK-AFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQF 1339
Query: 127 PSQM-----------SGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQV 175
P ++ S G +Q + LAR ++ + ILLLDEP A DP I LKQ
Sbjct: 1340 PDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQS 1399
Query: 176 CDERQLTLLMISHNLEDSMQIATRFIVIAGGQI 208
T+++ H +E ++ +F+VI G +
Sbjct: 1400 FSN--CTVILSEHRVEALLE-CQQFLVIEGSSV 1429
Score = 56.1 bits (135), Expect = 8e-09
Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 38/179 (21%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQE 79
F++ K + + + G +G+GKS+LL ++ G P+ G I +G R S S + I+
Sbjct: 447 FKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----RISFSPQTSWIMPG- 501
Query: 80 NNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQ---------- 129
T+ NI G L D Y++ V + + LE+ FP +
Sbjct: 502 -------TIKDNIIFG----LSYDEYRYTSVIKACQ---LEEDIALFPEKDKTVLGEGGI 547
Query: 130 -MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMIS 187
+SGGQR R++LAR + + + LLD PF D EI E L LM +
Sbjct: 548 TLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIF--------ESCLCKLMSN 598
>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein.
Length = 1394
Score = 57.4 bits (139), Expect = 3e-09
Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 19/214 (8%)
Query: 22 VNKAERIVILGPSGAGKSTLLSLMA----GFKYPTRGSIFLNGQNHTRSSPSKRPLSILF 77
+ E V+LG G+G STLL +A GF G I +G R +
Sbjct: 84 IKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYN 143
Query: 78 QENNL-FSHLTVWQNIALGIA---PNLRLDHYQHAQVKQMLEKVFLEDFF---------- 123
E ++ F HLTV + + P R D + + + V++ +
Sbjct: 144 AETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVG 203
Query: 124 NRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183
N F +SGG+R+RV++A + I D D A E + LK + T
Sbjct: 204 NDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTP 263
Query: 184 LM-ISHNLEDSMQIATRFIVIAGGQIVYDGDPDR 216
L+ I +D+ ++ + IV+ G +Y G D+
Sbjct: 264 LVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADK 297
Score = 37.8 bits (88), Expect = 0.002
Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 18/198 (9%)
Query: 30 ILGPSGAGKSTLLSLMAGFK---YPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHL 86
++G SGAGK+TLL+++A T G +NG S +R + + Q++
Sbjct: 794 LMGASGAGKTTLLNVLAERVTTGVITGGDRLVNG--RPLDSSFQRSIGYVQQQDLHLPTS 851
Query: 87 TVWQNIALGIAPNLRL-----DHYQHAQVKQMLEKVFLEDFFNRFPSQMSGG----QRQR 137
TV + +L + LR + V+++++ + +E + + G QR+R
Sbjct: 852 TVRE--SLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKR 909
Query: 138 VALARCLI-RQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQI 196
+ + L+ + K +L LDEP + D I L++++ D Q L I +
Sbjct: 910 LTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEE 969
Query: 197 ATRFIVIA-GGQIVYDGD 213
R +++ GGQ VY GD
Sbjct: 970 FDRLLLLQKGGQTVYFGD 987
>gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 57.4 bits (139), Expect = 3e-09
Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 42/208 (20%)
Query: 18 FDFQVNKAERIVI--LGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHTRSSP 68
FD ++ E+ V +GPSG GKST L + G + G I L+G++
Sbjct: 36 FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR--VTGKITLDGEDIYDPRL 93
Query: 69 SKRPL----SILFQENNLFSHLTVWQNIALG-----IAPN-LRLDHYQHAQVKQMLEKVF 118
L ++FQ+ N F ++++N+A G +A + LD V+ L K
Sbjct: 94 DVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEI----VETSLRKAG 148
Query: 119 L----EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDP---ALRHEILGL 171
L +D + + +SGGQ+QR+ +AR + ++L+DEP + DP A E++
Sbjct: 149 LWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDE 208
Query: 172 LKQVCDERQLTLLMISHNLEDSMQIATR 199
L+Q T+++++H SMQ A R
Sbjct: 209 LRQ-----NYTIVIVTH----SMQQAAR 227
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 56.9 bits (137), Expect = 4e-09
Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 20/193 (10%)
Query: 20 FQVNKAERIVILGPSGAGKSTL---LSLMAGFKYPTR--GSIFLNGQNHTRSSPS----K 70
Q+ K ++GPSG GKST L+ M R G + + G++ +
Sbjct: 33 MQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELR 92
Query: 71 RPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQ--VKQMLEKVFL-EDFFNRFP 127
+ + ++FQ+ N F ++++ N+A G P + + + V+ L L ++ +R
Sbjct: 93 KNVGMVFQKPNPFP-MSIYDNVAYG--PRIHGANKKDLDGVVENALRSAALWDETSDRLK 149
Query: 128 S---QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLL 184
S +SGGQ+QR+ +AR L + I+L DEP + DP I L+ + ++ T++
Sbjct: 150 SPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL--KKDYTIV 207
Query: 185 MISHNLEDSMQIA 197
+++HN++ + +I+
Sbjct: 208 IVTHNMQQAARIS 220
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 56.7 bits (137), Expect = 5e-09
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 104 HYQHAQVKQMLEKVFLED---FFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVF 160
++ + ++L +V ++D FP +++ G+ Q+V +A L Q +L+ DEP
Sbjct: 130 GWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAM 189
Query: 161 DPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
+P + +I LL ++ T+L+ISH+L+ Q A + V+ GQ V L+
Sbjct: 190 EPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVT 248
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 55.3 bits (133), Expect = 1e-08
Identities = 49/199 (24%), Positives = 93/199 (46%), Gaps = 22/199 (11%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQE 79
F+V + E + I+G +G+GKSTL +L+AG P +G++ + G +++
Sbjct: 45 FEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS-----------AALIAIS 93
Query: 80 NNLFSHLTVWQNIAL-GIAPNLRLDHYQHAQVKQMLEKVF----LEDFFNRFPSQMSGGQ 134
+ L LT +NI L G+ L + ++K+++ ++ + F + S G
Sbjct: 94 SGLNGQLTGIENIELKGLMMGLTKE-----KIKEIIPEIIEFADIGKFIYQPVKTYSSGM 148
Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSM 194
+ R+ A + IL++DE +V D + L + + E+ T+ ISH+L
Sbjct: 149 KSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEF-KEQGKTIFFISHSLSQVK 207
Query: 195 QIATRFIVIAGGQIVYDGD 213
T+ + + GQ+ GD
Sbjct: 208 SFCTKALWLHYGQVKEYGD 226
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 54.7 bits (131), Expect = 2e-08
Identities = 36/183 (19%), Positives = 64/183 (34%), Gaps = 53/183 (28%)
Query: 26 ERIVILGPSGAGKSTLLSLMAGF-KYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFS 84
E I+I+GP G+GK+TL +A P G I+++G++ +
Sbjct: 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQL------------- 49
Query: 85 HLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCL 144
L + SG R R+ALA
Sbjct: 50 ----------------------------------LLIIVGGKKASGSGELRLRLALALAR 75
Query: 145 IRQKPILLLDEPFAVFDPALRHEIL-----GLLKQVCDERQLTLLMISHNLEDSMQIATR 199
+ +L+LDE ++ D +L LL + E+ LT+++ +++ +D R
Sbjct: 76 KLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLR 135
Query: 200 FIV 202
Sbjct: 136 RRF 138
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 54.6 bits (131), Expect = 2e-08
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 14/153 (9%)
Query: 14 LKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS-KRP 72
L Q F + + + G +GAGK+TLL L+AG P +G I Q+ + + ++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75
Query: 73 LSILFQENNLFSHLTVWQNIALGI---APNLRLDHYQHAQVKQMLEKVFLEDFFNRFP-S 128
L + + + +LT+ +N I + + L ++F + +P
Sbjct: 76 LCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITE---------LCRLFSLEHLIDYPCG 126
Query: 129 QMSGGQRQRVALARCLIRQKPILLLDEPFAVFD 161
+S GQ+++VAL R + + + LLDEP D
Sbjct: 127 LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159
>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 53.7 bits (130), Expect = 4e-08
Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 39/213 (18%)
Query: 11 YDNLKM--QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLN--------G 60
+DN + + + ER+ I+G +G GK+TLL + G P G++ +
Sbjct: 329 FDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYA 388
Query: 61 QNHTRSSPSKRPLSILFQEN-NLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEK-VF 118
Q+H F+ + LF ++ W R + V+ L + +F
Sbjct: 389 QDHAYD----------FENDLTLFDWMSQW-----------RQEGDDEQAVRGTLGRLLF 427
Query: 119 LEDFFNRFPSQMSGGQRQRVALARCLIRQKP-ILLLDEPFAVFDPALRHEILGLLKQVCD 177
+D + +SGG++ R+ + L+ QKP +L++DEP D E + L +
Sbjct: 428 SQDDIKKSVKVLSGGEKGRMLFGK-LMMQKPNVLVMDEPTNHMD----MESIESLNMALE 482
Query: 178 ERQLTLLMISHNLEDSMQIATRFIVIAGGQIVY 210
+ + TL+ +SH+ E +ATR I I +V
Sbjct: 483 KYEGTLIFVSHDREFVSSLATRIIEITPDGVVD 515
Score = 34.9 bits (81), Expect = 0.016
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 128 SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMIS 187
S+++ G + RV LA+ L ILLLDEP D + I L+ V +ER T+++IS
Sbjct: 154 SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDI---NTI-RWLEDVLNERNSTMIIIS 209
Query: 188 H 188
H
Sbjct: 210 H 210
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 53.6 bits (129), Expect = 5e-08
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 17/191 (8%)
Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPL----SILFQENNLFSH 85
++G +GAGKSTLL + G GSI G+ S SK L S++ QE NL
Sbjct: 29 LMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS-SKEALENGISMVHQELNLVLQ 87
Query: 86 LTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP----SQMSGGQRQRVALA 141
+V N+ LG P + ++ + + +F E + P + +S Q Q + +A
Sbjct: 88 RSVMDNMWLGRYP-TKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIA 146
Query: 142 RCLIRQKPILLLDEPFAVF-DPALRH--EILGLLKQVCDERQLTLLMISHNLEDSMQIAT 198
+ I+++DEP + + + H I+ LK ER ++ ISH +E+ Q+
Sbjct: 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK----ERGCGIVYISHKMEEIFQLCD 202
Query: 199 RFIVIAGGQIV 209
++ GQ +
Sbjct: 203 EITILRDGQWI 213
Score = 52.0 bits (125), Expect = 1e-07
Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 38/214 (17%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ---NHT------------ 64
F ++K E + I G GA ++ ++ + G + + G+I L+G+ NH
Sbjct: 269 FDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALV 328
Query: 65 ----RSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLE 120
RS+ L I F N+L S++ ++N +G+ N R+ + M K
Sbjct: 329 TEERRSTGIYAYLDIGF--NSLISNIRNYKN-KVGLLDNSRMKSDTQWVIDSMRVKT--- 382
Query: 121 DFFNRFPSQ------MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQ 174
P +SGG +Q+V + R L+ Q IL+LDEP D + EI L+ +
Sbjct: 383 ------PGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAE 436
Query: 175 VCDERQLTLLMISHNLEDSMQIATRFIVIAGGQI 208
+ + + +++IS + + + I R +V++ G +
Sbjct: 437 LAKKDK-GIIIISSEMPELLGITDRILVMSNGLV 469
>gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei.
Length = 659
Score = 52.4 bits (126), Expect = 9e-08
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 39/207 (18%)
Query: 1 MIKLDHL---IYCYDNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIF 57
IK +++ D L F+V ++I GP+G GKS+L ++ +P G
Sbjct: 451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGEL-WPVYGG-- 507
Query: 58 LNGQNHTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDH----YQHAQVKQM 113
+ P+K L + Q + T+ I I P+ D ++Q+
Sbjct: 508 ------RLTKPAKGKLFYVPQR-PYMTLGTLRDQI---IYPDSSEDMKRRGLSDKDLEQI 557
Query: 114 LEKVFLEDFFNR---------FPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFD--- 161
L+ V L R + +SGG++QR+A+AR L KP FA+ D
Sbjct: 558 LDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMAR-LFYHKPQ------FAILDECT 610
Query: 162 PALRHEILGLLKQVCDERQLTLLMISH 188
A+ ++ G + ++C E +TL +SH
Sbjct: 611 SAVSVDVEGYMYRLCREFGITLFSVSH 637
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 52.5 bits (126), Expect = 1e-07
Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 20/203 (9%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQE 79
+ + + I ++G +G+GKSTL +++ G PT G + NG+ +S++
Sbjct: 45 LKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-----------VSVIAIS 93
Query: 80 NNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVF----LEDFFNRFPSQMSGGQR 135
L LT +NI + ++ ++K M K+ L +F + + S G R
Sbjct: 94 AGLSGQLTGIENIEF----KMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMR 149
Query: 136 QRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQ 195
++ + + IL++DE +V D + L + + E+ T+ +SHNL Q
Sbjct: 150 AKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEF-KEQNKTIFFVSHNLGQVRQ 208
Query: 196 IATRFIVIAGGQIVYDGDPDRLM 218
T+ I GG++ G+ D ++
Sbjct: 209 FCTKIAWIEGGKLKDYGELDDVL 231
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 52.0 bits (125), Expect = 1e-07
Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 29/194 (14%)
Query: 19 DFQVNKAERIVILGPSGAGKS-TLLSLMAGFKYPTR--GSIFLNGQ----------NHTR 65
+F + E + I+G SG+GKS T +LM R GS NG+ N R
Sbjct: 36 NFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLR 95
Query: 66 SSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRL-DHYQHAQ-----VKQMLEKVFL 119
+ +S++FQ+ + L + + + L L A+ V+ ML+ V +
Sbjct: 96 A----EQISMIFQDP--MTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVR-MLDAVKM 148
Query: 120 EDFFNR---FPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVC 176
+ R +P + SGG RQRV +A L+ + +L+ DEP D ++ +I+ LL ++
Sbjct: 149 PEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELK 208
Query: 177 DERQLTLLMISHNL 190
E ++MI+H+L
Sbjct: 209 REFNTAIIMITHDL 222
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 47.7 bits (114), Expect = 3e-06
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 130 MSGGQRQRVAL-ARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISH 188
+S GQ QR+AL R L++ +L+LDEP DP R + + + E + LL +SH
Sbjct: 402 LSWGQ-QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSH 460
Query: 189 NLEDSMQ-IATRFIVIAGGQI 208
+ ED+ I R + G I
Sbjct: 461 HAEDAPACITHRLEFVPDGDI 481
Score = 42.7 bits (101), Expect = 9e-05
Identities = 49/230 (21%), Positives = 94/230 (40%), Gaps = 42/230 (18%)
Query: 11 YDNLKMQFD-FQVNKAERIVILGPSGAGKSTL-------LSLMAG-----FKYPTRGSIF 57
D +Q +N + +G +G+GKS L L L++G F + TR S F
Sbjct: 14 SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLS-F 72
Query: 58 LNGQNHTRSSPSKRPLSILFQENN--LFSH------LTVWQNIALGIAPNLRLDHYQHAQ 109
Q + +S +Q NN + S T + I D +
Sbjct: 73 EQLQ---------KLVSDEWQRNNTDMLSPGEDDTGRTTAEII---------QDEVKDPA 114
Query: 110 VKQMLEKVF-LEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEI 168
+ L + F + +R +S G+ ++ L + L+ + +L+LDEPF D A R ++
Sbjct: 115 RCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQL 174
Query: 169 LGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLM 218
LL + + +TL+++ + ++ V+A + G+ + ++
Sbjct: 175 AELLASL-HQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223
Score = 41.2 bits (97), Expect = 2e-04
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAG 47
+QVN E I+GP+GAGKSTLLSL+ G
Sbjct: 278 NLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308
>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 45.5 bits (108), Expect = 1e-05
Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 40/222 (18%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS------KRPL 73
F++ E++ I+G +G+GKSTLL G I +NG R + +R
Sbjct: 1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNG----REIGAYGLRELRRQF 1386
Query: 74 SILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSG- 132
S++ Q+ LF TV QN+ P L A+V LE V L + R S+ G
Sbjct: 1387 SMIPQDPVLFDG-TVRQNVD----PFLEA---SSAEVWAALELVGLRE---RVASESEGI 1435
Query: 133 -------------GQRQRVALARCLI-RQKPILLLDEPFAVFDPALRHEILGLLKQVCDE 178
GQRQ + +AR L+ + +L+DE A DPAL +I +
Sbjct: 1436 DSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS- 1494
Query: 179 RQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL-MN 219
T++ I+H L Q + IV+ G + G P L MN
Sbjct: 1495 -AYTVITIAHRLHTVAQY-DKIIVMDHGAVAEMGSPRELVMN 1534
Score = 40.9 bits (96), Expect = 3e-04
Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 42/206 (20%)
Query: 29 VILGPSGAGKSTLL-SLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHLT 87
V+LG +G+GKSTLL SL++ F+ + G ++ ++R ++ + Q+ + + T
Sbjct: 690 VVLGATGSGKSTLLQSLLSQFEI-SEGRVW-----------AERSIAYVPQQAWIMN-AT 736
Query: 88 VWQNI-------ALGIAPNLRLDHYQHAQVKQM---LEKVFLEDFFNRFPSQMSGGQRQR 137
V NI A +A +R+ + A + Q+ LE E N +SGGQ+ R
Sbjct: 737 VRGNILFFDEEDAARLADAVRVSQLE-ADLAQLGGGLETEIGEKGVN-----LSGGQKAR 790
Query: 138 VALARCLIRQKPILLLDEPFAVFDPALRHEI-----LGLLKQVCDERQLTLLMISHNLED 192
V+LAR + + + LLD+P + D + + LG L T ++ +H +
Sbjct: 791 VSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL------AGKTRVLATHQVH- 843
Query: 193 SMQIATRFIVIAGGQIVYDGDPDRLM 218
+ A + + G++ + G M
Sbjct: 844 VVPRADYVVALGDGRVEFSGSSADFM 869
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 43.7 bits (103), Expect = 4e-05
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 9/127 (7%)
Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHLTVW 89
I G +G GKS+LL ++AG P+ G+I+ +N ++ +K + + L +TV+
Sbjct: 31 IKGANGCGKSSLLRMIAGIMQPSSGNIYY--KNCNINNIAKPYCTYIGHNLGLKLEMTVF 88
Query: 90 QNIALGIAPNLRLDHYQHAQVKQMLEKVF-LEDFFNRFPSQMSGGQRQRVALARCLIRQK 148
+N+ + Y A+ F L D + +S G ++ VA+AR + Q
Sbjct: 89 ENLKFWS------EIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQS 142
Query: 149 PILLLDE 155
+ LLDE
Sbjct: 143 DLWLLDE 149
>gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 41.4 bits (97), Expect = 2e-04
Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 10/104 (9%)
Query: 124 NRFPSQMSGGQRQRVALARCLIRQ--KPILLLDEPFAVFDPALRHEILGLLKQVCDERQL 181
R + +SGG+++R ALA+ L + +LDEP P H+++ ++K++ D+
Sbjct: 471 ERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGN- 529
Query: 182 TLLMISHNLEDSMQIATRFIVIA------GGQIVYDGDPDRLMN 219
T+L++ H+ E + +A R I I GG+++++G P +
Sbjct: 530 TVLLVEHD-EQMISLADRIIDIGPGAGIFGGEVLFNGSPREFLA 572
Score = 27.1 bits (60), Expect = 4.2
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 128 SQMSGGQRQRVALARCLI--RQKPIL-LLDEPFAVFDPALRHEILGLLKQVCDERQLTLL 184
S +SGG+ QR+ LA L+ +KP L +LDEP ++ +L+ + + T++
Sbjct: 808 SSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGH-TVV 866
Query: 185 MISHNL 190
+I HN+
Sbjct: 867 IIEHNM 872
>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 40.5 bits (95), Expect = 3e-04
Identities = 45/141 (31%), Positives = 64/141 (45%), Gaps = 34/141 (24%)
Query: 27 RIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHL 86
RI +LG +GAGKSTL+ L+AG P G I L + ++ L L + + HL
Sbjct: 340 RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL-AKGIKLGYFAQHQLEFLRADESPLQHL 398
Query: 87 TVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQ----------MSGGQRQ 136
+AP Q LE+ L D+ F Q SGG++
Sbjct: 399 A-------RLAP-------------QELEQK-LRDYLGGFGFQGDKVTEETRRFSGGEKA 437
Query: 137 RVALARCLIRQKP-ILLLDEP 156
R+ LA ++ Q+P +LLLDEP
Sbjct: 438 RLVLA-LIVWQRPNLLLLDEP 457
Score = 37.5 bits (87), Expect = 0.003
Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 28/158 (17%)
Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ------NHTRSSPSKRPLSI 75
+N +++ ++G +G GKSTLL+L+ GS G N + + L
Sbjct: 24 INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEY 83
Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKV-----------------F 118
+ + + L + A N R D + A + L+ + F
Sbjct: 84 VIDGDREYRQLEAQLHDA-----NERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGF 138
Query: 119 LEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEP 156
+ R S SGG R R+ LA+ LI + +LLLDEP
Sbjct: 139 SNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176
>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 39.1 bits (91), Expect = 0.001
Identities = 52/234 (22%), Positives = 95/234 (40%), Gaps = 46/234 (19%)
Query: 29 VILGPSGAGKSTLLSLMAGFKYPT---RGSIFLNGQNHTRSSPSKRPLSILFQENNL-FS 84
++LGP +GK+TLL +AG P+ G I NG P K S +N++
Sbjct: 195 LLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKT--SAYISQNDVHVG 252
Query: 85 HLTVWQNIAL------------------------GIAPNLRLDHYQHAQVKQMLEKVFLE 120
+TV + + GI P +D + A + ++ +
Sbjct: 253 VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLIT 312
Query: 121 DFFNRF-----------PSQM----SGGQRQRVALARCLIRQKPILLLDEPFAVFDPALR 165
D+ + +M SGGQ++RV ++ L +DE D +
Sbjct: 313 DYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 372
Query: 166 HEILGLLKQVCDERQLTLLM-ISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLM 218
++I+ L+Q+ + T+LM + ++ + I+++ GQIVY G D ++
Sbjct: 373 YQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHIL 426
Score = 34.4 bits (79), Expect = 0.027
Identities = 51/202 (25%), Positives = 97/202 (48%), Gaps = 28/202 (13%)
Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRP----LSILFQENNLFS- 84
++G SGAGK+TL+ ++AG K T G ++ G P K+ +S ++N++ S
Sbjct: 911 LMGVSGAGKTTLMDVLAGRK--TGG--YIEGDIRISGFPKKQETFARISGYCEQNDIHSP 966
Query: 85 HLTVWQNIALGIAPNLRLDHYQHAQ-----VKQMLEKVFLEDFFNR---FP--SQMSGGQ 134
+TV + +L + LRL + V +++E V L++ + P + +S Q
Sbjct: 967 QVTVRE--SLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQ 1024
Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSM 194
R+R+ +A L+ I+ +DEP + D ++ ++ D + + I + S+
Sbjct: 1025 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---QPSI 1081
Query: 195 QIATRF----IVIAGGQIVYDG 212
I F ++ GGQ++Y G
Sbjct: 1082 DIFEAFDELLLMKRGGQVIYSG 1103
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 38.2 bits (89), Expect = 0.002
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFK-YP-TRGSIFLNGQNHTRSSPSKR 71
+ +V E I+GP+G+GKSTL + +AG + Y T G++ G++ SP R
Sbjct: 21 NLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDR 75
>gnl|CDD|184357 PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional.
Length = 811
Score = 36.4 bits (85), Expect = 0.006
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 30 ILGPSGAGKSTLLSLMA 46
++GP+GAGKS LL+LMA
Sbjct: 446 VVGPTGAGKSVLLALMA 462
>gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University).
Length = 924
Score = 36.1 bits (84), Expect = 0.009
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 21/102 (20%)
Query: 130 MSGGQRQRVALARCLIRQ---KPILLLDEP-----FAVFDPALRHEILGLLKQVCDERQL 181
+SGG+ QR+ LA+ L ++ + + +LDEP F D E+L L +
Sbjct: 829 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFD--DIKKLLEVLQRLVDQGN---- 882
Query: 182 TLLMISHNLEDSMQIATRFIVI------AGGQIVYDGDPDRL 217
T+++I HNL D ++ A I + GG IV G P+ +
Sbjct: 883 TVVVIEHNL-DVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923
Score = 35.8 bits (83), Expect = 0.011
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 124 NRFPSQMSGGQRQRVALARCLIRQ--KPILLLDEPFAVFDPALRHEILGLLKQVCDERQL 181
+R +SGG+ QR+ LA + + +LDEP ++ LK++ R L
Sbjct: 482 SRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRL---RDL 538
Query: 182 --TLLMISHNLEDSMQIATRFIVIA------GGQIVYDGDPDRLMN 219
T++++ H+ E++++ A I I GG++V G P+ ++
Sbjct: 539 GNTVIVVEHD-EETIRAADYVIDIGPGAGIHGGEVVASGTPEEILA 583
Score = 29.6 bits (67), Expect = 0.79
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 13 NLKMQFDFQVNKAERIVILGPSGAGKSTL 41
NLK D ++ + + +VI G SG+GKS+L
Sbjct: 11 NLK-NIDVEIPRDKLVVITGLSGSGKSSL 38
Score = 27.7 bits (62), Expect = 2.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 29 VILGPSGAGKSTLL 42
I G SG+GKSTL+
Sbjct: 637 CITGVSGSGKSTLI 650
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 34.9 bits (80), Expect = 0.018
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 12/72 (16%)
Query: 130 MSGGQRQ------RVALARCLIRQKPILLLDEPFAVFDPALRHEILGL----LKQVCDER 179
+SGG++ RVA+A+ L K +L++DEP A D R + + LK D
Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIP 861
Query: 180 QLTLLMISHNLE 191
Q ++MISH+ E
Sbjct: 862 Q--VIMISHHRE 871
>gnl|CDD|168339 PRK06002, fliI, flagellum-specific ATP synthase; Validated.
Length = 450
Score = 34.2 bits (79), Expect = 0.028
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 25 AERIVILGPSGAGKSTLLSLMAG 47
+RI I SG GKSTLL+++A
Sbjct: 165 GQRIGIFAGSGVGKSTLLAMLAR 187
>gnl|CDD|178371 PLN02772, PLN02772, guanylate kinase.
Length = 398
Score = 34.0 bits (78), Expect = 0.031
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 28 IVILGPSGAGKSTLLS-LMAGFKYPTRGSIFLNGQNHTRSSP 68
IVI GPSG GK TL+S LM F S+F +HT +P
Sbjct: 138 IVISGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP 174
>gnl|CDD|132307 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP
kinase. This enzyme transfers a phosphate from ATP to
GMP, yielding ADP and GDP.
Length = 180
Score = 34.0 bits (79), Expect = 0.032
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 28 IVILGPSGAGKSTLLSLM 45
IVI GPSG GKSTL+ +
Sbjct: 4 IVISGPSGVGKSTLVKAL 21
>gnl|CDD|183313 PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional.
Length = 345
Score = 34.0 bits (79), Expect = 0.033
Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 51/154 (33%)
Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPT---------RGSIFLNGQNHTRSS 67
+ + +V+ G +G+GK+ LL +A RGS F G+
Sbjct: 133 TLEEAPAQFPLVVLGGNTGSGKTELLQALANAGAQVLDLEGLANHRGSSF--GRLGG-PQ 189
Query: 68 PSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP 127
PS F EN L AL L+LD + + +ED
Sbjct: 190 PS----QKDF-ENLLA--------EAL-----LKLDPARP---------IVVED-----E 217
Query: 128 SQMSGGQRQRVALARCL---IRQKPILLLDEPFA 158
S+ G RV L L ++Q PI++++ P
Sbjct: 218 SRRIG----RVHLPEALYEAMQQAPIVVVEAPLE 247
>gnl|CDD|172357 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional.
Length = 818
Score = 33.7 bits (77), Expect = 0.044
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 29 VILGPSGAGKSTLLSLMAG-FKYPTRGSIF 57
+I GP+G+GKSTLL+L+A F+ IF
Sbjct: 460 LIFGPTGSGKSTLLALIAAQFRRYAGAQIF 489
>gnl|CDD|149505 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins
(Miro-1 and Miro-2), are atypical Rho GTPases. They
have a unique domain organisation, with tandem
GTP-binding domains and two EF hand domains
(pfam00036), that may bind calcium. They are also
larger than classical small GTPases. It has been
proposed that they are involved in mitochondrial
homeostasis and apoptosis.
Length = 118
Score = 33.6 bits (77), Expect = 0.047
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 27 RIVILGPSGAGKSTLLSLMAGFKYPT 52
++V++G G+GKS+LLS + G ++P
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPP 26
>gnl|CDD|179771 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 33.2 bits (77), Expect = 0.053
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 27 RIVILGPSGAGKSTLLSLMA---GFKYPTRGSIF 57
I I GP G+GK+T+ L+A G K+ + G IF
Sbjct: 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIF 35
>gnl|CDD|162115 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 33.1 bits (76), Expect = 0.058
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 18 FDFQVNKAERI---VILGPSGAGKSTLLS--LMAGFKY 50
F+F V A+ + +I GP+G+GK+TLL+ L KY
Sbjct: 424 FNFHVRDAKVLGHTLIFGPTGSGKTTLLNFLLAQMQKY 461
>gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 33.3 bits (77), Expect = 0.061
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 29 VILGPSGAGKSTLLSLMAG 47
V+ G SG GKSTLL+ +A
Sbjct: 168 VLAGQSGVGKSTLLNALAP 186
>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 33.0 bits (76), Expect = 0.061
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 28 IVILGPSGAGKSTL 41
+ +LG SG GKSTL
Sbjct: 198 VALLGSSGVGKSTL 211
>gnl|CDD|178968 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 32.8 bits (76), Expect = 0.073
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 28 IVILGPSGAGKSTL 41
IV+ GPSGAGKSTL
Sbjct: 8 IVLSGPSGAGKSTL 21
>gnl|CDD|161778 TIGR00231, small_GTP, small GTP-binding protein domain. This
model recognizes a large number of small GTP-binding
proteins and related domains in larger proteins. Note
that the alpha chains of heterotrimeric G proteins are
larger proteins in which the NKXD motif is separated
from the GxxxxGK[ST] motif (P-loop) by a long insert
and are not easily detected by this model.
Length = 161
Score = 32.7 bits (75), Expect = 0.087
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 27 RIVILGPSGAGKSTLLSLMAGFKYPT 52
+IVI+G GKSTLL+ + G K+ T
Sbjct: 3 KIVIVGDPNVGKSTLLNRLLGNKFIT 28
>gnl|CDD|184809 PRK14738, gmk, guanylate kinase; Provisional.
Length = 206
Score = 32.8 bits (75), Expect = 0.088
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 23 NKAER---IVILGPSGAGKSTLLSLMAGFKYP 51
NK + +VI GPSG GK +L+ M K P
Sbjct: 8 NKPAKPLLVVISGPSGVGKDAVLARMRERKLP 39
>gnl|CDD|178800 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 32.4 bits (75), Expect = 0.11
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 28 IVILGPSGAGKSTLLSLMA---GFKY 50
I I GP+G+GK T+ ++A GF Y
Sbjct: 7 IAIDGPAGSGKGTVAKILAKKLGFHY 32
>gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of
cytidylate kinase, which catalyzes the phosphorylation
of cytidine 5-monophosphate (dCMP) to cytidine 5
-diphosphate (dCDP) in the presence of ATP or GTP. UMP
and dCMP can also act as acceptors.
Length = 217
Score = 32.0 bits (73), Expect = 0.13
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 28 IVILGPSGAGKSTLLSLMA---GFKYPTRGSIF 57
I I GPSGAGKST+ +A G+ Y G+++
Sbjct: 5 IAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMY 37
>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated.
Length = 438
Score = 32.0 bits (73), Expect = 0.14
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMA 46
V K +R+ I SG GKSTL+ ++A
Sbjct: 153 LTVGKGQRVGIFAGSGVGKSTLMGMIA 179
>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 418
Score = 31.9 bits (73), Expect = 0.15
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 24 KAERIVILGPSGAGKSTLLSLMAG 47
+ +R+ I SG GKSTLLS++A
Sbjct: 139 RGQRLGIFAGSGVGKSTLLSMLAR 162
>gnl|CDD|181681 PRK09183, PRK09183, transposase/IS protein; Provisional.
Length = 259
Score = 31.6 bits (72), Expect = 0.17
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Query: 22 VNKAERIVILGPSGAGKSTL------LSLMAGFK 49
+ + E IV+LGPSG GK+ L ++ AG K
Sbjct: 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIK 132
>gnl|CDD|184311 PRK13764, PRK13764, ATPase; Provisional.
Length = 602
Score = 31.7 bits (73), Expect = 0.17
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI 56
+AE I+I G GAGKST +A F Y G I
Sbjct: 254 EERAEGILIAGAPGAGKSTFAQALAEF-YADMGKI 287
>gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 31.4 bits (72), Expect = 0.19
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 21 QVNKAERIV--ILGPSGAGKSTL 41
Q R + I GP GAGKSTL
Sbjct: 27 QAEPQRRTIVGIAGPPGAGKSTL 49
>gnl|CDD|163292 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 411
Score = 31.3 bits (72), Expect = 0.20
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGF 48
V + +R+ I SG GKSTLL +MA +
Sbjct: 134 VGRGQRMGIFAGSGVGKSTLLGMMARY 160
>gnl|CDD|162162 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of
ATPases demonstrates extensive homology with ATP
synthase F1, beta subunit. It is a mixture of members
with two different protein functions. The first group is
exemplified by Salmonella typhimurium FliI protein. It
is needed for flagellar assembly, its ATPase activity is
required for flagellation, and it may be involved in a
specialized protein export pathway that proceeds without
signal peptide cleavage. The second group of proteins
function in the export of virulence proteins;
exemplified by Yersinia sp. YscN protein an ATPase
involved in the type III secretory pathway for the
antihost Yops proteins.
Length = 440
Score = 31.2 bits (71), Expect = 0.22
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMA 46
V K +RI I SG GKSTLL ++A
Sbjct: 158 LTVGKGQRIGIFAGSGVGKSTLLGMIA 184
>gnl|CDD|178957 PRK00279, adk, adenylate kinase; Reviewed.
Length = 215
Score = 31.3 bits (72), Expect = 0.24
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 27 RIVILGPSGAGKST 40
R+++LGP GAGK T
Sbjct: 2 RLILLGPPGAGKGT 15
>gnl|CDD|132536 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 413
Score = 31.1 bits (71), Expect = 0.25
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 22 VNKAERIVILGPSGAGKSTLLSLMA 46
+ K +R+ I SG GKSTLL ++A
Sbjct: 134 IGKGQRVGIFAGSGVGKSTLLGMIA 158
>gnl|CDD|162806 TIGR02322, phosphon_PhnN, phosphonate metabolism
protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
Members of this family resemble PhnN of phosphonate
utilization operons, where different such operons
confer the ability to use somewhat different profiles
of C-P bond-containing compounds (see PubMed:15231805),
including phosphites as well as phosphonates. PhnN in
E. coli shows considerable homology to guanylate
kinases (EC 2.7.4.8), and has actually been shown to
act as a ribose 1,5-bisphosphokinase (PRPP forming).
This suggests an analogous kinase reaction for
phosphonate metabolism, converting
5-phosphoalpha-1-(methylphosphono)ribose to
methylphosphono-PRPP.
Length = 179
Score = 30.4 bits (69), Expect = 0.37
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 28 IVILGPSGAGKSTLL 42
I ++GPSGAGK TLL
Sbjct: 4 IYVVGPSGAGKDTLL 18
>gnl|CDD|180615 PRK06547, PRK06547, hypothetical protein; Provisional.
Length = 172
Score = 30.5 bits (69), Expect = 0.37
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 28 IVILGPSGAGKSTLLSLMAG 47
++I G SG+GK+TL +A
Sbjct: 18 VLIDGRSGSGKTTLAGALAA 37
>gnl|CDD|180730 PRK06851, PRK06851, hypothetical protein; Provisional.
Length = 367
Score = 30.3 bits (69), Expect = 0.39
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 18 FDFQVNKAERIVIL-GPSGAGKSTLL 42
+D ++ A RI IL G G GKSTL+
Sbjct: 22 YDSIIDGANRIFILKGGPGTGKSTLM 47
>gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 30.4 bits (69), Expect = 0.40
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 11/73 (15%)
Query: 13 NLKMQFDFQVNKAERIVILGPSGAGKSTLL-SLMAGFKYPTRGSIFLNG---QNHTRSSP 68
+ ++FD +N +I+G +G+GKS++L +++ G Y GS G + TR
Sbjct: 16 SSVVEFDDGIN-----LIIGQNGSGKSSILEAILVGL-YWGHGS-KPKGLKKDDFTRIGG 68
Query: 69 SKRPLSILFQENN 81
S + + F++N
Sbjct: 69 SGTEIELKFEKNG 81
Score = 27.7 bits (62), Expect = 2.4
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 15/72 (20%)
Query: 130 MSGGQRQ------RVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQL-- 181
+SGG+R R+AL+ L P+L+LDEP D R +++ ++ ER L
Sbjct: 789 LSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIM-----ERYLRK 843
Query: 182 --TLLMISHNLE 191
++++SH+ E
Sbjct: 844 IPQVIIVSHDEE 855
>gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein
VexC; Provisional.
Length = 213
Score = 30.4 bits (68), Expect = 0.42
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRG 54
DF + E I IL G+GK+TL L+ G P G
Sbjct: 7 DFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEG 42
>gnl|CDD|162744 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins
in this family are believed to be cytidylate kinase.
Members of this family are found in the archaea and in
spirochaetes, and differ considerably from the common
bacterial form of cytidylate kinase described by
TIGR00017.
Length = 171
Score = 30.5 bits (69), Expect = 0.43
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 28 IVILGPSGAGKSTLLSLMA---GFKYPTRGSIF 57
I I GP G+GK+T+ ++A K + G IF
Sbjct: 3 ITISGPPGSGKTTVAKILAEKLSLKLISAGDIF 35
>gnl|CDD|162313 TIGR01351, adk, adenylate kinases. Adenylate kinase (EC 2.7.4.3)
converts ATP + AMP to ADP + ADP, that is, uses ATP as a
phosphate donor for AMP. Most members of this family
are known or believed to be adenylate kinase. However,
some members accept other nucleotide triphosphates as
donors, may be unable to use ATP, and may fail to
complement adenylate kinase mutants. An example of a
nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10)
is a GTP:AMP phosphotransferase. This family is
designated subfamily rather than equivalog for this
reason.
Length = 210
Score = 30.3 bits (69), Expect = 0.48
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 27 RIVILGPSGAGKSTLLSLMA 46
R+V+LGP G+GK T +A
Sbjct: 1 RLVLLGPPGSGKGTQAKRIA 20
>gnl|CDD|150847 pfam10236, DAP3, Mitochondrial ribosomal death-associated protein
3. This is a family of conserved proteins which were
originally described as death-associated-protein-3
(DAP-3). The proteins carry a P-loop DNA-binding motif,
and induce apoptosis. DAP3 has been shown to be a
pro-apoptotic factor in the mitochondrial matrix and to
be crucial for mitochondrial biogenesis and so has also
been designated as MRP-S29 (mitochondrial ribosomal
protein subunit 29).
Length = 274
Score = 30.3 bits (69), Expect = 0.49
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 24 KAERIVILGPSGAGKSTLLS-LMA 46
K R V+ G G+GKS LL+ MA
Sbjct: 22 KVVRFVLTGERGSGKSVLLAQAMA 45
>gnl|CDD|181101 PRK07742, PRK07742, phosphate butyryltransferase; Validated.
Length = 299
Score = 30.1 bits (68), Expect = 0.55
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Query: 177 DERQLTLLMISHNLEDSMQIATRFIVIAGG---------QIVYDGDPDRLMNGLIPESTL 227
++ ++ ++ H L+ S I I+ A + V +G+ D LM G +P + +
Sbjct: 48 NQEKIMGMLQEHGLQTSEHIE---IIHAQSSAEAAELAVKAVRNGEADVLMKGNVPTANI 104
Query: 228 L 228
L
Sbjct: 105 L 105
>gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed.
Length = 167
Score = 30.0 bits (68), Expect = 0.57
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 27 RIVILGPSGAGKSTL 41
+I+++G G+GKSTL
Sbjct: 3 KIILIGSGGSGKSTL 17
>gnl|CDD|185216 PRK15316, PRK15316, RatA-like protein; Provisional.
Length = 2683
Score = 30.0 bits (67), Expect = 0.60
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 44 LMAGFKYPTRGSIFLNGQNHTRSSPS 69
GF PTRG+I +NG + S PS
Sbjct: 776 QTTGFDDPTRGAIEMNGTLYGTSQPS 801
>gnl|CDD|163168 TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine synthase. The
Escherichia coli YbbB protein was shown to encode a
selenophosphate-dependent tRNA 2-selenouridine synthase,
essential for modification of some tRNAs to replace a
sulfur atom with selenium. This enzyme works with SelD,
the selenium donor protein, which also acts in
selenocysteine incorporation. Although the members of
this protein family show a fairly deep split, sequences
from both sides of the split are supported by
co-occurence with, and often proximity to, the selD
gene.
Length = 311
Score = 29.9 bits (68), Expect = 0.65
Identities = 40/165 (24%), Positives = 54/165 (32%), Gaps = 57/165 (34%)
Query: 6 HLIYCYDNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPT---------RGSI 56
+I + L F IV+ G +G+GK+ LL +A RGS
Sbjct: 115 FVIDQLEELPQPFPL-------IVLGGMTGSGKTELLHALANAGAQVLDLEGLANHRGSS 167
Query: 57 FLNGQNHTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEK 116
F G PS F EN L L RLD +
Sbjct: 168 F--GALGLGPQPS----QKRF-ENALAEAL-------------RRLDPGR---------P 198
Query: 117 VFLEDFFNRFPSQMSGGQRQRVALARCLI---RQKPILLLDEPFA 158
+F+ED S+ G RVAL L R P++ L+
Sbjct: 199 IFVED-----ESRRIG----RVALPDALFEAMRAAPLVELEASLE 234
>gnl|CDD|182845 PRK10927, PRK10927, essential cell division protein FtsN;
Provisional.
Length = 319
Score = 29.6 bits (66), Expect = 0.66
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 127 PSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLT 182
P Q++ QRQ + + +RQ+P L++ P+ P R + L +Q +QL
Sbjct: 111 PEQLTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQ---AQQLA 163
>gnl|CDD|162913 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase.
Length = 422
Score = 29.6 bits (67), Expect = 0.67
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 22 VNKAERIVILGPSGAGKSTLLSLMA 46
+ +RI I +G GKSTLL ++A
Sbjct: 142 CGEGQRIGIFAGAGVGKSTLLGMIA 166
>gnl|CDD|178887 PRK00131, aroK, shikimate kinase; Reviewed.
Length = 175
Score = 29.8 bits (68), Expect = 0.68
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 23 NKAERIVILGPSGAGKSTLLSLMA 46
K IV++G GAGKST+ L+A
Sbjct: 2 LKGPNIVLIGFMGAGKSTIGRLLA 25
>gnl|CDD|184375 PRK13891, PRK13891, conjugal transfer protein TrbE; Provisional.
Length = 852
Score = 29.7 bits (67), Expect = 0.71
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 29 VILGPSGAGKSTLLSLMA 46
+ GP+GAGKST L ++A
Sbjct: 492 FMFGPTGAGKSTHLGIIA 509
>gnl|CDD|163225 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems.
Length = 1169
Score = 29.6 bits (67), Expect = 0.71
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 29 VILGPSGAGKSTLL 42
+++GP G+GK+TLL
Sbjct: 115 LVIGPPGSGKTTLL 128
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 29.6 bits (67), Expect = 0.74
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 21 QVNKAERIVIL---GPSGAGKSTLL 42
+ +R V+L G SG GK+T L
Sbjct: 1 MTSMPDRPVLLGVAGDSGCGKTTFL 25
>gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle.
Length = 1179
Score = 29.6 bits (67), Expect = 0.76
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 128 SQMSGGQRQRVALARC----LIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183
S +SGG++ ALA ++ P +LDE A D A LLK+ Q
Sbjct: 1088 SLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQ--F 1145
Query: 184 LMISHNLEDSMQIA 197
++I+HN + +M++A
Sbjct: 1146 IVITHN-KGTMEVA 1158
>gnl|CDD|163456 TIGR03744, traC_PFL_4706, conjugative transfer ATPase, PFL_4706
family. Members of this protein family are predicted
ATP-binding proteins apparently associated with DNA
conjugal transfer. Members are found both in plasmids
and in bacterial chromosomal regions that appear to
derive from integrative elements such as conjugative
transposons. More distant homologs, outside the scope of
this family, include type IV secretion/conjugal transfer
proteins such as TraC, VirB4 and TrsE. The granularity
of this protein family definition is chosen so as to
represent one distinctive clade and act as a marker
through which to define and recognize the class of
mobile element it serves.
Length = 893
Score = 29.6 bits (67), Expect = 0.79
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 18 FDFQVNKAER-----IVILGPSGAGKSTLLSLMAGF 48
FD +NK +R ++ILGP+GAGKS L+ +
Sbjct: 464 FD-PLNKLDRKKNAHLLILGPTGAGKSATLTNLLMQ 498
>gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 29.3 bits (67), Expect = 0.80
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 131 SGGQRQRVALARCLIRQ---KPILLLDEP 156
SGG+ QRV LA+ L ++ K + +LDEP
Sbjct: 832 SGGEAQRVKLAKELSKRSTGKTLYILDEP 860
Score = 28.9 bits (66), Expect = 1.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 28 IVILGPSGAGKSTL 41
+V G SG+GKS+L
Sbjct: 29 VVFTGLSGSGKSSL 42
Score = 27.0 bits (61), Expect = 4.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 28 IVILGPSGAGKSTLL 42
+ G SG+GKSTL+
Sbjct: 638 TCVTGVSGSGKSTLI 652
Score = 25.8 bits (58), Expect = 9.4
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 9/45 (20%)
Query: 182 TLLMISHNLEDSMQIATRFIV-------IAGGQIVYDGDPDRLMN 219
TL+++ H+ ED+++ A +IV + GG++V G P+ +M
Sbjct: 543 TLIVVEHD-EDTIRAAD-YIVDIGPGAGVHGGEVVASGTPEEIMK 585
>gnl|CDD|129833 TIGR00750, lao, LAO/AO transport system ATPase. Mutations have
also been found that do not phosphorylate the
periplasmic binding proteins, yet still allow
transport. The ATPase activity of this protein seems to
be necessary, however.
Length = 300
Score = 29.4 bits (66), Expect = 0.81
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 24 KAERIVILGPSGAGKSTLLS 43
A R+ I G GAGKSTLL
Sbjct: 33 NAHRVGITGTPGAGKSTLLE 52
>gnl|CDD|178433 PLN02840, PLN02840, tRNA dimethylallyltransferase.
Length = 421
Score = 29.4 bits (66), Expect = 0.83
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 23 NKAER-IVILGPSGAGKSTL 41
K E+ IVI GP+GAGKS L
Sbjct: 18 TKKEKVIVISGPTGAGKSRL 37
>gnl|CDD|128328 smart00010, small_GTPase, Small GTPase of the Ras superfamily;
ill-defined subfamily. SMART predicts Ras-like small
GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies.
Others that could not be classified in this way are
predicted to be members of the small GTPase superfamily
without predictions of the subfamily.
Length = 124
Score = 29.3 bits (66), Expect = 0.86
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 27 RIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNG 60
++V +G SG GK + F + ++F G
Sbjct: 2 KVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG 35
>gnl|CDD|75717 PRK06731, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 270
Score = 29.3 bits (65), Expect = 0.86
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 1 MIKLDHLIYCYDNLKMQFDFQ---VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIF 57
MI + + Y +++ F+ + + + I ++GP+G GK+T L+ MA + + ++
Sbjct: 48 MITEEVIEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG 107
Query: 58 LNGQNHTR 65
+H+R
Sbjct: 108 FITTDHSR 115
>gnl|CDD|128386 smart00072, GuKc, Guanylate kinase homologues. Active enzymes
catalyze ATP-dependent phosphorylation of GMP to GDP.
Structure resembles that of adenylate kinase. So-called
membrane-associated guanylate kinase homologues
(MAGUKs) do not possess guanylate kinase activities;
instead at least some possess protein-binding
functions.
Length = 184
Score = 29.2 bits (66), Expect = 0.88
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 28 IVILGPSGAGKSTLLSLM 45
IV+ GPSG GK TLL+ +
Sbjct: 5 IVLSGPSGVGKGTLLAEL 22
>gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional.
Length = 201
Score = 29.1 bits (66), Expect = 0.95
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 28 IVILGPSGAGKSTLLSLMAGFKYPT 52
IV +G S GKSTL+ + G K
Sbjct: 12 IVFVGRSNVGKSTLVRELTGKKVRV 36
>gnl|CDD|183360 PRK11889, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 436
Score = 29.3 bits (65), Expect = 1.0
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 1 MIKLDHLI-YCYDNLKMQFDFQ---VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI 56
MI + +I Y ++++ F+ + + + I ++GP+G GK+T L+ MA + + ++
Sbjct: 213 MITEEEVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTV 272
Query: 57 FLNGQNHTR 65
+H+R
Sbjct: 273 GFITTDHSR 281
>gnl|CDD|177394 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 29.2 bits (66), Expect = 1.1
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 19 DFQVNKAERIVILGPSGAGKSTLL 42
+ Q++K ++ +I G +GAGKST+L
Sbjct: 21 EIQLDKVKKTLITGKNGAGKSTML 44
>gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated.
Length = 444
Score = 28.9 bits (65), Expect = 1.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGS 55
V K +R+ + SG GKS LL +M TRG+
Sbjct: 159 VGKGQRMGLFAGSGVGKSVLLGMM------TRGT 186
>gnl|CDD|184315 PRK13768, PRK13768, GTPase; Provisional.
Length = 253
Score = 28.7 bits (65), Expect = 1.3
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 28 IVILGPSGAGKSTL 41
+ LG +G+GK+TL
Sbjct: 5 VFFLGTAGSGKTTL 18
>gnl|CDD|181583 PRK08927, fliI, flagellum-specific ATP synthase; Validated.
Length = 442
Score = 28.8 bits (65), Expect = 1.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 26 ERIVILGPSGAGKSTLLSLMA 46
+R+ I SG GKS LLS++A
Sbjct: 159 QRMGIFAGSGVGKSVLLSMLA 179
>gnl|CDD|179996 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed.
Length = 449
Score = 28.5 bits (65), Expect = 1.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 27 RIVILGPSGAGKSTLLSLMAG 47
++VI G GKS+LL+ + G
Sbjct: 217 KVVIAGRPNVGKSSLLNALLG 237
>gnl|CDD|181925 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 28.6 bits (64), Expect = 1.4
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 27 RIVILGPSGAGKSTL---LSLMAGFKYPTRGSIF 57
+ I GP+G GKS++ L+ G+ Y G+++
Sbjct: 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMY 36
>gnl|CDD|172418 PRK13898, PRK13898, type IV secretion system ATPase VirB4;
Provisional.
Length = 800
Score = 28.6 bits (64), Expect = 1.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 18 FDFQVNKAERIVILGPSGAGKSTLLSLM 45
F+F V +I+GP+GAGK+ L++ +
Sbjct: 439 FNFHVRDVGHTLIIGPTGAGKTVLMNFL 466
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 28.7 bits (64), Expect = 1.5
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 27 RIVILGPSGAGKST 40
R+++LGP GAGK T
Sbjct: 2 RLILLGPPGAGKGT 15
>gnl|CDD|178835 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 28.6 bits (65), Expect = 1.5
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 12/47 (25%)
Query: 11 YDNLKMQFDFQVNKAERIVILGPSGAGKSTLL---SLMAGFKYPTRG 54
Y+ L ++ VN V++G +G GK+ LL L+A P R
Sbjct: 14 YEELDLELSPGVN-----VLVGENGQGKTNLLEAIYLLA----PGRS 51
Score = 28.2 bits (64), Expect = 1.8
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 149 PILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLM--ISHNLEDSMQIATRFIVIAGG 206
PILLLD+ + D R +L LK + + + + + + G
Sbjct: 302 PILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLEDLADLLENAKIFHVEQG 357
Query: 207 QIV 209
+I
Sbjct: 358 KIT 360
>gnl|CDD|179089 PRK00698, tmk, thymidylate kinase; Validated.
Length = 205
Score = 28.6 bits (65), Expect = 1.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 28 IVILGPSGAGKSTLLSLMA 46
I I G GAGKST + L+
Sbjct: 6 ITIEGIDGAGKSTQIELLK 24
>gnl|CDD|180064 PRK05416, PRK05416, glmZ(sRNA)-inactivating NTPase; Provisional.
Length = 288
Score = 28.5 bits (65), Expect = 1.7
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 27 RIVIL-GPSGAGKSTLL 42
R+VI+ G SGAGKS L
Sbjct: 7 RLVIVTGLSGAGKSVAL 23
>gnl|CDD|178349 PLN02748, PLN02748, tRNA dimethylallyltransferase.
Length = 468
Score = 28.3 bits (63), Expect = 1.7
Identities = 10/18 (55%), Positives = 16/18 (88%)
Query: 24 KAERIVILGPSGAGKSTL 41
KA+ +V++GP+G+GKS L
Sbjct: 21 KAKVVVVMGPTGSGKSKL 38
>gnl|CDD|181957 PRK09563, rbgA, GTPase YlqF; Reviewed.
Length = 287
Score = 28.2 bits (64), Expect = 1.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 13 NLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAG 47
N + + +A R +I+G GKSTL++ +AG
Sbjct: 109 NERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAG 143
>gnl|CDD|183702 PRK12723, PRK12723, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 388
Score = 28.3 bits (63), Expect = 1.9
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 1 MIKLDHLIYCYDNLKMQFDFQVNKAERIVIL-GPSGAGKSTLLSLMA 46
++ +IY +K N +R+ IL GP+G GK+T ++ +A
Sbjct: 149 KVRDSVIIYIAKTIKCSGSIIDNLKKRVFILVGPTGVGKTTTIAKLA 195
>gnl|CDD|149409 pfam08337, Plexin_cytopl, Plexin cytoplasmic RasGAP domain. This
family features the C-terminal regions of various
plexins. Plexins are receptors for semaphorins, and
plexin signalling is important in path finding and
patterning of both neurons and developing blood vessels.
The cytoplasmic region, which has been called a SEX
domain in some members of this family, is involved in
downstream signalling pathways, by interaction with
proteins such as Rac1, RhoD, Rnd1 and other plexins.
This domain acts as a RasGAP domain.
Length = 538
Score = 28.1 bits (63), Expect = 1.9
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 75 ILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQ 134
+ F + +H + + P + Q +Q+ + K FL F + SQ S
Sbjct: 15 VFFPDPGHETHPLLRDLVPESRRPTVEQGLTQFSQL--LNNKSFLLTFIHTLESQRSFSV 72
Query: 135 RQRVALARCLI 145
R R +A L
Sbjct: 73 RDRCNVASLLT 83
>gnl|CDD|184728 PRK14530, PRK14530, adenylate kinase; Provisional.
Length = 215
Score = 28.2 bits (63), Expect = 2.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 27 RIVILGPSGAGKST 40
RI++LG GAGK T
Sbjct: 5 RILLLGAPGAGKGT 18
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 28.1 bits (63), Expect = 2.0
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 13/46 (28%)
Query: 127 PSQMSGGQRQRVALA-RCLI-----------RQKPILLLDEPFAVF 160
P Q+SGG+R L+ RC I P L+LDEP VF
Sbjct: 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEP-TVF 823
Score = 26.5 bits (59), Expect = 5.8
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Query: 3 KLDHL----IYCYDNLKMQFDFQVNKAERIVILGPSGAGKSTLL 42
+ D + CY + ++ + V VI G +G+GKS+LL
Sbjct: 2 RFDRVRLENFKCYADADLRLEDGVT-----VIHGVNGSGKSSLL 40
>gnl|CDD|128472 smart00175, RAB, Rab subfamily of small GTPases. Rab GTPases are
implicated in vesicle trafficking.
Length = 164
Score = 28.2 bits (64), Expect = 2.0
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 27 RIVILGPSGAGKSTLLS 43
+I+++G SG GKS+LLS
Sbjct: 2 KIILIGDSGVGKSSLLS 18
>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
Length = 171
Score = 28.1 bits (63), Expect = 2.1
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 27 RIVILGPSGAGKSTL 41
+I I+G SG+GKSTL
Sbjct: 2 KIAIIGYSGSGKSTL 16
>gnl|CDD|184074 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase;
Provisional.
Length = 512
Score = 27.9 bits (63), Expect = 2.1
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 28 IVILGPSGAGKSTLLSLMA---GFKY 50
I I GP+GAGKST+ +A G Y
Sbjct: 287 IAIDGPAGAGKSTVTRAVAKKLGLLY 312
>gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University).
Length = 637
Score = 28.0 bits (62), Expect = 2.3
Identities = 38/164 (23%), Positives = 59/164 (35%), Gaps = 54/164 (32%)
Query: 16 MQFDFQVNKAERIVIL-GPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLS 74
++ N +RI+++ GPSG GKST + +++ + L
Sbjct: 100 LKAQVLENAPKRILLITGPSGCGKSTTIKILS------------------------KELG 135
Query: 75 ILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMS--- 131
I QE W N P+ +Q K L LE F+ F SQ+
Sbjct: 136 IQVQE---------WSN---PTLPD-----FQKNDHKVTL---SLESCFSNFQSQIEVFS 175
Query: 132 ----GGQRQRVALARCLIRQKPILLLDEPFAVF--DPALRHEIL 169
+ L L+ K I+L+++ F D HEIL
Sbjct: 176 EFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEIL 219
>gnl|CDD|182226 PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional.
Length = 186
Score = 27.8 bits (62), Expect = 2.6
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 28 IVILGPSGAGKSTLLS---------LMAGFKYPTRGSIFLNGQNHTRSSP 68
I ++GPSG+GK +LL+ L+ +Y TR + +NH S
Sbjct: 5 IWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPA-SAGSENHIALSE 53
>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional.
Length = 441
Score = 27.8 bits (62), Expect = 2.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 26 ERIVILGPSGAGKSTLLSLMA 46
+R+ I P+G GKSTL+ + A
Sbjct: 164 QRMGIFAPAGVGKSTLMGMFA 184
>gnl|CDD|180712 PRK06820, PRK06820, type III secretion system ATPase; Validated.
Length = 440
Score = 27.5 bits (61), Expect = 2.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 26 ERIVILGPSGAGKSTLLSLMA 46
+RI I +G GKSTLL ++
Sbjct: 164 QRIGIFAAAGVGKSTLLGMLC 184
>gnl|CDD|183986 PRK13342, PRK13342, recombination factor protein RarA; Reviewed.
Length = 413
Score = 27.4 bits (62), Expect = 3.2
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 29 VIL-GPSGAGKSTLLSLMAG 47
+IL GP G GK+TL ++AG
Sbjct: 39 MILWGPPGTGKTTLARIIAG 58
>gnl|CDD|162177 TIGR01054, rgy, reverse gyrase. Generally, these gyrases are
encoded as a single polypeptide. An exception was found
in Methanopyrus kandleri, where enzyme is split within
the topoisomerase domain, yielding a heterodimer of gene
products designated RgyB and RgyA.
Length = 1171
Score = 27.5 bits (61), Expect = 3.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 21 QVNKAERIVILGPSGAGKSTLLSLMAGF 48
+V + + I+ P+G GK+T M+ F
Sbjct: 89 RVLRGDSFAIIAPTGVGKTTFGLAMSLF 116
>gnl|CDD|180056 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.
Length = 854
Score = 27.4 bits (62), Expect = 3.5
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 7/35 (20%)
Query: 19 DFQVNKAERIVIL-GPSGAGKST------LLSLMA 46
D +++ R++++ GP+ AGKST L+ L+A
Sbjct: 600 DCDLDEERRLLLITGPNMAGKSTYMRQVALIVLLA 634
>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional.
Length = 442
Score = 27.2 bits (60), Expect = 3.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 22 VNKAERIVILGPSGAGKSTLLSLMA 46
V + +RI I +G GKS+LL ++A
Sbjct: 161 VARGQRIGIFAGAGVGKSSLLGMIA 185
>gnl|CDD|183904 PRK13231, PRK13231, nitrogenase reductase-like protein; Reviewed.
Length = 264
Score = 27.1 bits (60), Expect = 3.6
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 26 ERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNG----QNHTRSSPSKRPLSIL 76
++I I G G GKST +S MA Y + + G + TR+ KR ++L
Sbjct: 3 KKIAIYGKGGIGKSTTVSNMAA-AYSNDHRVLVIGCDPKADTTRTLCGKRIPTVL 56
>gnl|CDD|184726 PRK14527, PRK14527, adenylate kinase; Provisional.
Length = 191
Score = 27.1 bits (60), Expect = 3.7
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 21 QVNKAERIVILGPSGAGKSTLLSLMA---GFKYPTRGSI 56
K + ++ LGP GAGK T +A G K + G I
Sbjct: 2 TQTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDI 40
>gnl|CDD|184151 PRK13570, PRK13570, anthranilate synthase component I; Provisional.
Length = 455
Score = 27.2 bits (61), Expect = 4.0
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 8/29 (27%)
Query: 194 MQIATRFIVI--------AGGQIVYDGDP 214
IA R +V+ AG IVYD DP
Sbjct: 409 FAIAIRTMVLKNGKAYVQAGAGIVYDSDP 437
>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated.
Length = 455
Score = 27.1 bits (60), Expect = 4.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGF 48
V + +R+ + SG GKS LL +MA +
Sbjct: 172 VGRGQRMGLFAGSGVGKSVLLGMMARY 198
>gnl|CDD|185542 PTZ00293, PTZ00293, thymidine kinase; Provisional.
Length = 211
Score = 27.0 bits (60), Expect = 4.3
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 29 VILGPSGAGKST-LLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSH 85
VI+GP +GK+T L+ L+ F Y + + + TR S E N+ SH
Sbjct: 8 VIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKDTRYS----------DEQNISSH 55
>gnl|CDD|163008 TIGR02768, TraA_Ti, Ti-type conjugative transfer relaxase TraA.
This protein contains domains distinctive of a single
strand exonuclease (N-terminus, MobA/MobL, pfam03389) as
well as a helicase domain (central region, homologous to
the corresponding region of the F-type relaxase TraI,
TIGR02760). This protein likely fills the same role as
TraI(F), nicking (at the oriT site) and unwinding the
coiled plasmid prior to conjugative transfer.
Length = 744
Score = 27.1 bits (60), Expect = 4.4
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 22 VNKAERI-VILGPSGAGKSTLL 42
V + I V++G +G GKST+L
Sbjct: 364 VTGSGDIAVVVGRAGTGKSTML 385
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 27.1 bits (60), Expect = 4.4
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 30 ILGPSGAGKSTLL 42
I GP+GAGK+TLL
Sbjct: 35 ITGPTGAGKTTLL 47
>gnl|CDD|161932 TIGR00564, trpE_most, anthranilate synthase component I,
non-proteobacterial lineages. A second family of TrpE
enzymes is modelled by TIGR00565. The breaking of the
TrpE family into these diverse models allows for the
separation of the models for the related enzyme, PabB.
Length = 454
Score = 26.9 bits (60), Expect = 4.4
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 8/31 (25%)
Query: 194 MQIATRFIVI--------AGGQIVYDGDPDR 216
IA R +V+ AGG IV D DP+
Sbjct: 407 TAIAIRTMVVKDGKAYVQAGGGIVADSDPEA 437
>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era. Era is an essential
GTPase in Escherichia coli and many other bacteria. It
plays a role in ribosome biogenesis. Few bacteria lack
this protein.
Length = 270
Score = 27.0 bits (60), Expect = 4.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 27 RIVILGPSGAGKSTLLSLMAGFK 49
+ ILG GKSTLL+ + G K
Sbjct: 2 FVAILGRPNVGKSTLLNQLHGQK 24
>gnl|CDD|180607 PRK06526, PRK06526, transposase; Provisional.
Length = 254
Score = 26.8 bits (59), Expect = 4.7
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 19 DFQVNKAERIVILGPSGAGKSTL 41
DF V E +V LGP G GK+ L
Sbjct: 93 DF-VTGKENVVFLGPPGTGKTHL 114
>gnl|CDD|184251 PRK13695, PRK13695, putative NTPase; Provisional.
Length = 174
Score = 26.8 bits (60), Expect = 4.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 27 RIVILGPSGAGKSTLL 42
+I I GP G GK+TL+
Sbjct: 2 KIGITGPPGVGKTTLV 17
>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional.
Length = 216
Score = 26.8 bits (59), Expect = 4.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 27 RIVILGPSGAGKSTLLS 43
+IV++G SG GKS +LS
Sbjct: 14 KIVLIGDSGVGKSNILS 30
>gnl|CDD|163345 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein
YlqF. Members of this protein family are GTP-binding
proteins involved in ribosome biogenesis, including the
essential YlqF protein of Bacillus subtilis, which is an
essential protein. They are related to Era, EngA, and
other GTPases of ribosome biogenesis, but are circularly
permuted. This family is not universal, and is not
present in Escherichia coli, and so is not as well
studied as some other GTPases. This model is built for
bacterial members.
Length = 276
Score = 26.7 bits (60), Expect = 4.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 13 NLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAG 47
N K++ N+ R +I+G GKSTL++ +AG
Sbjct: 106 NEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAG 140
>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation
factor. Ras homologues involved in vesicular
transport. Activator of phospholipase D isoforms.
Unlike Ras proteins they lack cysteine residues at
their C-termini and therefore are unlikely to be
prenylated. ARFs are N-terminally myristoylated.
Contains ATP/GTP-binding motif (P-loop).
Length = 175
Score = 26.8 bits (59), Expect = 5.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 23 NKAERIVILGPSGAGKSTLL 42
NK RI+++G AGK+T+L
Sbjct: 11 NKEMRILMVGLDAAGKTTIL 30
>gnl|CDD|183342 PRK11860, PRK11860, bifunctional 3-phosphoshikimate
1-carboxyvinyltransferase/cytidine monophosphate kinase;
Provisional.
Length = 661
Score = 26.9 bits (60), Expect = 5.1
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 20 FQVNKAER-----IVILGPSGAGKSTLLSLMA---GFKYPTRGSIF 57
F V +A+ I I GP+ +GK T+ + +A G+ Y G+++
Sbjct: 432 FSVAQADADRVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALY 477
>gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated.
Length = 451
Score = 26.6 bits (59), Expect = 5.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGF 48
V + +R+ + +G GKS LL +M F
Sbjct: 165 VGRGQRLGLFAGTGVGKSVLLGMMTRF 191
>gnl|CDD|184491 PRK14079, recF, recombination protein F; Provisional.
Length = 349
Score = 26.7 bits (59), Expect = 5.5
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 131 SGGQRQRVALA-RC----LIRQK----PILLLDEPFAVFDPALRHEILGL 171
S G+ + VALA R L+ + P+LL+D+ A DP R +L L
Sbjct: 265 SRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLAL 314
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 26.4 bits (59), Expect = 5.7
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 27 RIVILGPSGAGKSTL 41
+I+++G SG GK+TL
Sbjct: 3 KIMLIGRSGCGKTTL 17
>gnl|CDD|181696 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 26.4 bits (59), Expect = 6.1
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 167 EILGLLKQVCDERQLTLLMISHNLEDSMQIATR 199
E+L ++ V E+ + ++ LE+++ A +
Sbjct: 4 ELLEAIEAVAREKGIDREVVIEALEEALATAYK 36
>gnl|CDD|150194 pfam09439, SRPRB, Signal recognition particle receptor beta
subunit. The beta subunit of the signal recognition
particle receptor (SRP) is a transmembrane GTPase which
anchors the alpha subunit to the endoplasmic reticulum
membrane.
Length = 181
Score = 26.6 bits (59), Expect = 6.3
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 23 NKAERIVILGPSGAGKSTLLS-LMAGFKYPTRGSI 56
+ ++I G +GK++L + L G T S
Sbjct: 1 SSQPAVIIAGLCDSGKTSLFTLLTTGSVRKTVTSQ 35
>gnl|CDD|148176 pfam06414, Zeta_toxin, Zeta toxin. This family consists of
several bacterial zeta toxin proteins. Zeta toxin is
thought to be part of a postregulational killing system
in bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 26.5 bits (59), Expect = 6.3
Identities = 6/33 (18%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 28 IVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNG 60
+++ G GAGK+ L + + + ++
Sbjct: 15 VLLGGQPGAGKTELARALLE-ELGGGNVVRIDP 46
>gnl|CDD|181256 PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional
regulator; Reviewed.
Length = 309
Score = 26.5 bits (59), Expect = 6.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 27 RIVILGPSGAGKSTLLSLMA 46
RI ++G GAGKSTL ++A
Sbjct: 135 RIALIGLRGAGKSTLGRMLA 154
>gnl|CDD|163531 TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase.
Members of this protein family comprise a distinct
clade of putative ATPase associated with an integral
membrane complex likely to act in pilus formation,
secretion, or conjugal transfer. The association of most
members with a nearby gene for a DEAH-box helicase
suggests a role in conjugal transfer.
Length = 340
Score = 26.5 bits (59), Expect = 6.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 28 IVILGPSGAGKSTLLSLMAG 47
+I G +G+GK+TLLS +
Sbjct: 181 FLISGGTGSGKTTLLSALLA 200
>gnl|CDD|184258 PRK13702, PRK13702, replication protein; Provisional.
Length = 85
Score = 26.2 bits (58), Expect = 6.6
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 130 MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLL-MISH 188
+S ++QR ++AR K I VF +++ + L ++C+E LT MI
Sbjct: 24 LSAAEKQRASVARKRATHKEI-------KVF---IQNPLKDKLMELCEEEGLTQAEMIER 73
Query: 189 NLEDSMQ 195
+E +
Sbjct: 74 LIERELA 80
>gnl|CDD|183407 PRK12289, PRK12289, GTPase RsgA; Reviewed.
Length = 352
Score = 26.5 bits (59), Expect = 6.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 29 VILGPSGAGKSTLL 42
V+ GPSG GKS+L+
Sbjct: 176 VVAGPSGVGKSSLI 189
>gnl|CDD|162997 TIGR02746, TraC-F-type, type-IV secretion system protein TraC. The
protein family described here is common among the F, P
and I-like type IV secretion systems. Gene symbols
include TraC (F-type), TrbE/VirB4 (P-type) and TraU
(I-type). The protein conyains the Walker A and B motifs
and so is a putative nucleotide triphosphatase.
Length = 797
Score = 26.5 bits (59), Expect = 6.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 28 IVILGPSGAGKSTLLSLMA 46
I ++G SGAGKS + +
Sbjct: 433 IAVVGGSGAGKSFFMQELI 451
>gnl|CDD|128538 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 26.4 bits (59), Expect = 7.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 10 CYDNLKMQFDFQVNKAERIVILGPSGAGKST 40
Y N+ + + I+I G SGAGK+
Sbjct: 82 AYRNML-----NDKENQSIIISGESGAGKTE 107
>gnl|CDD|183713 PRK12740, PRK12740, elongation factor G; Reviewed.
Length = 668
Score = 26.2 bits (59), Expect = 7.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 31 LGPSGAGKSTLL 42
+G SGAGK+TL
Sbjct: 1 VGHSGAGKTTLT 12
>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional.
Length = 334
Score = 26.4 bits (58), Expect = 7.5
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 27 RIVILGPSGAGKSTLLSLM 45
R++++G SG GKS+L+ L+
Sbjct: 23 RVLVVGDSGVGKSSLVHLI 41
>gnl|CDD|162298 TIGR01313, therm_gnt_kin, carbohydrate kinase, thermoresistant
glucokinase family. This model represents a subfamily
of proteins that includes thermoresistant and
thermosensitve isozymes of gluconate kinase
(gluconokinase) in E. coli and other related proteins;
members of this family are often named by similarity to
the thermostable isozyme. These proteins show homology
to shikimate kinases and adenylate kinases but not to
gluconate kinases from the FGGY family of carbohydrate
kinases.
Length = 163
Score = 26.2 bits (58), Expect = 7.8
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Query: 28 IVILGPSGAGKSTLLSLMA---GFKY 50
V++G +G+GKST+ S +A G K+
Sbjct: 1 FVLMGVAGSGKSTIASALAHRLGAKF 26
>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated.
Length = 434
Score = 26.0 bits (57), Expect = 8.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ 61
+ K +RI + G+GKS+LLS +A T I L G+
Sbjct: 154 LGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGE 193
>gnl|CDD|185364 PRK15467, PRK15467, ethanolamine utilization protein EutP;
Provisional.
Length = 158
Score = 26.1 bits (57), Expect = 8.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 26 ERIVILGPSGAGKSTLLSLMAG 47
+RI +G GAGK+TL + + G
Sbjct: 2 KRIAFVGAVGAGKTTLFNALQG 23
>gnl|CDD|128807 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS
family.
Length = 185
Score = 26.0 bits (58), Expect = 8.4
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 6/25 (24%)
Query: 28 IVILGPSGAGKSTLL------SLMA 46
++I GP+ GKST L +MA
Sbjct: 2 VIITGPNMGGKSTYLRQVGLIVIMA 26
>gnl|CDD|179793 PRK04220, PRK04220, 2-phosphoglycerate kinase; Provisional.
Length = 301
Score = 26.1 bits (58), Expect = 8.5
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
Query: 26 ERIVIL--GPSGAGKSTL 41
E I+IL G SG G ST+
Sbjct: 91 EPIIILIGGASGVGTSTI 108
>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated.
Length = 432
Score = 26.1 bits (57), Expect = 8.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 26 ERIVILGPSGAGKSTLLSLMA 46
++I I SG GKSTLL ++A
Sbjct: 157 QKIGIFAGSGVGKSTLLGMIA 177
>gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP. This
protein is found within operons which code for
polyhedral organelles containing the enzyme
ethanolamine ammonia lyase. The function of this gene
is unknown, although the presence of an N-terminal
GxxGxGK motif implies a GTP-binding site.
Length = 142
Score = 25.9 bits (57), Expect = 9.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 27 RIVILGPSGAGKSTL 41
RI+ +G G GK+TL
Sbjct: 2 RIMFIGSVGCGKTTL 16
>gnl|CDD|179921 PRK05057, aroK, shikimate kinase I; Reviewed.
Length = 172
Score = 25.8 bits (57), Expect = 9.5
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 28 IVILGPSGAGKSTL 41
I ++GP GAGKST+
Sbjct: 7 IFLVGPMGAGKSTI 20
>gnl|CDD|162351 TIGR01420, pilT_fam, pilus retraction protein PilT. This model
represents the PilT subfamily of proteins related to
GspE, a protein involved in type II secretion (also
called the General Secretion Pathway). PilT is an
apparent cytosolic ATPase associated with type IV pilus
systems. It is not required for pilin biogenesis, but is
required for twitching motility and social gliding
behaviors, shown in some species, powered by pilus
retraction. Members of this family may be found in some
species that type IV pili but have related structures
for DNA uptake and natural transformation.
Length = 343
Score = 25.7 bits (57), Expect = 9.6
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 28 IVILGPSGAGKSTLLSLM 45
I++ GP+G+GKST L+ M
Sbjct: 125 ILVTGPTGSGKSTTLASM 142
>gnl|CDD|161957 TIGR00611, recf, recF protein. All proteins in this family for
which functions are known are DNA binding proteins that
assist the filamentation of RecA onto DNA for the
initiation of recombination or recombinational repair.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University).
Length = 365
Score = 25.8 bits (57), Expect = 9.9
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 10 CYDNLKMQFDFQVNKAERIVILGPSGAGKSTLL 42
YD + ++ VN VI+GP+G GK+ LL
Sbjct: 13 NYDAVDLELSPGVN-----VIVGPNGQGKTNLL 40
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.325 0.141 0.420
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,957,724
Number of extensions: 253368
Number of successful extensions: 1549
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1246
Number of HSP's successfully gapped: 428
Length of query: 234
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 144
Effective length of database: 4,049,753
Effective search space: 583164432
Effective search space used: 583164432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.5 bits)