RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] (234 letters) >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional. Length = 232 Score = 418 bits (1078), Expect = e-118 Identities = 135/232 (58%), Positives = 176/232 (75%) Query: 1 MIKLDHLIYCYDNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNG 60 M+KL + + Y +L M+FD V + ER+ ILGPSGAGKSTLL+L+AGF P GS+ LNG Sbjct: 1 MLKLTDITWLYHHLPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNG 60 Query: 61 QNHTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLE 120 Q+HT + PS+RP+S+LFQENNLFSHLTV QNI LG+ P L+L+ Q ++ + ++ +E Sbjct: 61 QDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE 120 Query: 121 DFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQ 180 D R P Q+SGGQRQRVALARCL+R++PILLLDEPF+ DPALR E+L L+ QVC ERQ Sbjct: 121 DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQ 180 Query: 181 LTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGLIPESTLLGIPS 232 LTLLM+SH+LED+ +IA R +V+A G+I +DG D L++G S LLGI S Sbjct: 181 LTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKASASALLGIKS 232 >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. Length = 213 Score = 275 bits (704), Expect = 7e-75 Identities = 115/212 (54%), Positives = 155/212 (73%) Query: 2 IKLDHLIYCYDNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ 61 + LD + Y Y++L M+FD V E + I+GPSGAGKSTLL+L+AGF P GSI +N Q Sbjct: 1 LALDKVRYEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQ 60 Query: 62 NHTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLED 121 +HT +P +RP+S+LFQENNLF+HLTV QNI LG+ P L+L+ Q +V ++V + D Sbjct: 61 SHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIAD 120 Query: 122 FFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQL 181 + +R P Q+SGGQRQRVALARCL+R PILLLDEPF+ DP LR E+L L+KQ+C ERQ Sbjct: 121 YLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQR 180 Query: 182 TLLMISHNLEDSMQIATRFIVIAGGQIVYDGD 213 TLLM++H+L D+ IA++ V++ G+I D Sbjct: 181 TLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein. Length = 237 Score = 178 bits (452), Expect = 2e-45 Identities = 84/199 (42%), Positives = 125/199 (62%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQ 78 + +V + +LGPSG+GKSTLL ++AG + P G I LNGQ+ TR R + +FQ Sbjct: 20 NLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 Query: 79 ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRV 138 LF HLTV NIA G+ A+V+++LE V LE +R+P+Q+SGGQRQRV Sbjct: 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRV 139 Query: 139 ALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIAT 198 ALAR L + +LLLDEPF D +R E+ L+++ DE +T + ++H+ E++M++A Sbjct: 140 ALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVAD 199 Query: 199 RFIVIAGGQIVYDGDPDRL 217 R +V++ G+I G PD + Sbjct: 200 RIVVMSNGKIEQIGSPDEV 218 >gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed. Length = 375 Score = 172 bits (437), Expect = 1e-43 Identities = 78/203 (38%), Positives = 123/203 (60%), Gaps = 12/203 (5%) Query: 18 FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILF 77 D +N E + +LGPSG GK+T+L L+AGF+ P G I L+GQ+ T R ++ +F Sbjct: 33 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVF 92 Query: 78 QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQ----VKQMLEKVFLEDFFNRFPSQMSGG 133 Q LF H+TV++N+A G LR+ A+ V + L V LE+F R P Q+SGG Sbjct: 93 QSYALFPHMTVFENVAFG----LRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGG 148 Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQL--TLLMISHNLE 191 Q+QRVA+AR ++ + +LLLDE + D LR ++ LK + +R+L T + ++H+ E Sbjct: 149 QQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKAL--QRKLGITFVFVTHDQE 206 Query: 192 DSMQIATRFIVIAGGQIVYDGDP 214 +++ ++ R +V+ G+I DG P Sbjct: 207 EALTMSDRIVVMRDGRIEQDGTP 229 >gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. Length = 353 Score = 171 bits (436), Expect = 1e-43 Identities = 79/201 (39%), Positives = 118/201 (58%), Gaps = 10/201 (4%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQ 78 V K E + +LGPSG GK+TLL ++AG + T G+I+ G++ TR P KR I+FQ Sbjct: 24 SLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83 Query: 79 ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQ-VKQMLEKVFLEDFFNRFPSQMSGGQRQR 137 LF +LTV NIA G+ N + + A+ V ++L+ V L ++P Q+SGGQ+QR Sbjct: 84 SYALFPNLTVADNIAYGLK-NRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQR 142 Query: 138 VALARCLIRQKPILLLDEPFAVFDP----ALRHEILGLLKQVCDERQLTLLMISHNLEDS 193 VALAR L +LLLDEP + D LR EI L +++ +T +M++H+ E++ Sbjct: 143 VALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRL----GVTTIMVTHDQEEA 198 Query: 194 MQIATRFIVIAGGQIVYDGDP 214 + +A R +V+ G I G P Sbjct: 199 LSMADRIVVMNHGVIEQVGTP 219 >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional. Length = 377 Score = 168 bits (426), Expect = 2e-42 Identities = 85/218 (38%), Positives = 130/218 (59%), Gaps = 17/218 (7%) Query: 13 NLKMQFDFQ---------VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNH 63 NL FD Q + K E +LG SG GKSTLL ++AGF+ PT G I L+G + Sbjct: 24 NLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL 83 Query: 64 TRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFF 123 + P +RP++++FQ LF H+TV QNIA G+ + ++V +ML V +++F Sbjct: 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFA 143 Query: 124 NRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALR----HEILGLLKQVCDER 179 R P Q+SGGQRQRVALAR L ++ +LLLDEP D LR E++ +L++V Sbjct: 144 KRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV---- 199 Query: 180 QLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217 +T +M++H+ E++M +A R ++ G+ V G+P+ + Sbjct: 200 GVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237 >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). Length = 325 Score = 161 bits (410), Expect = 1e-40 Identities = 76/192 (39%), Positives = 120/192 (62%), Gaps = 8/192 (4%) Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHLTVW 89 +LGPSG GK+TLL L+AGF+ P GSI L+G++ T P R ++++FQ LF H+TV Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60 Query: 90 QNIALGI----APNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLI 145 +N+A G+ P + +V + L V LE+F +R P Q+SGGQ+QRVALAR L+ Sbjct: 61 ENVAFGLKMRKVPRAEIK----PRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALV 116 Query: 146 RQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAG 205 + ILLLDEP + D LR ++ LK + ++ +T + ++H+ E++M ++ R ++ Sbjct: 117 FKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRK 176 Query: 206 GQIVYDGDPDRL 217 G+I G P+ + Sbjct: 177 GKIAQIGTPEEI 188 >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional. Length = 353 Score = 156 bits (395), Expect = 7e-39 Identities = 79/203 (38%), Positives = 124/203 (61%), Gaps = 10/203 (4%) Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENN 81 + + + +LGPSG+GK+TLL ++AG ++ T G I +G + +R R + +FQ Sbjct: 25 IPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYA 84 Query: 82 LFSHLTVWQNIALGIA-------PNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQ 134 LF H+TV+ NIA G+ PN A+V Q+LE V L +R+P+Q+SGGQ Sbjct: 85 LFRHMTVFDNIAFGLTVLPRRERPNA---AAIKAKVTQLLEMVQLAHLADRYPAQLSGGQ 141 Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSM 194 +QRVALAR L + ILLLDEPF D +R E+ L+Q+ +E + T + ++H+ E++M Sbjct: 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAM 201 Query: 195 QIATRFIVIAGGQIVYDGDPDRL 217 ++A R +V++ G I G PD++ Sbjct: 202 EVADRVVVMSQGNIEQAGTPDQV 224 >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. Length = 363 Score = 155 bits (392), Expect = 1e-38 Identities = 75/211 (35%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSP------SK 70 D + K E VI+G SG+GKST + ++ PT G IF++G+N + SP + Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRR 70 Query: 71 RPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVK--QMLEKVFLEDFFNRFPS 128 + + ++FQ+ LF H+T+ QN +LG P L Q + K ++L+ V LE++ +R+P Sbjct: 71 KKIGMVFQQFALFPHMTILQNTSLG--PELLGWPEQERKEKALELLKLVGLEEYEHRYPD 128 Query: 129 QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISH 188 ++SGG +QRV LAR L + ILL+DE F+ DP +R + LK++ Q T++ I+H Sbjct: 129 ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITH 188 Query: 189 NLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 +L+++++I R +++ G+IV G PD ++ Sbjct: 189 DLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. Length = 243 Score = 150 bits (380), Expect = 3e-37 Identities = 74/212 (34%), Positives = 113/212 (53%), Gaps = 13/212 (6%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK-----RPL 73 + +N E + I+GPSGAGKSTLL + P+ GSI L G + T+ K R + Sbjct: 22 NLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 Query: 74 SILFQENNLFSHLTVWQNI---ALGIAPNLR-----LDHYQHAQVKQMLEKVFLEDFFNR 125 ++FQ NL LTV +N+ LG P R + LE+V L D + Sbjct: 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQ 141 Query: 126 FPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLM 185 Q+SGGQ+QRVA+AR L +Q ++L DEP A DP +++ LK++ E +T+++ Sbjct: 142 RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVII 201 Query: 186 ISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217 H ++ + + A R + + G+IV+DG P L Sbjct: 202 NLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed. Length = 240 Score = 141 bits (358), Expect = 1e-34 Identities = 70/206 (33%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPL----S 74 D +++ E +VI+GPSG+GKSTLL + + T G + ++G +R + Sbjct: 21 DLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 Query: 75 ILFQENNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQVKQMLEKVFLEDFFNRFPSQMSGG 133 ++FQ+ LF HLT +N+ G + Q +++L KV L + + +PS++SGG Sbjct: 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGG 140 Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDS 193 Q+QRVA+AR L + ++L DEP + DP LRHE+L +++ + +E +T+++++H + + Sbjct: 141 QQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFA 199 Query: 194 MQIATRFIVIAGGQIVYDGDPDRLMN 219 ++A+R I I G+I DGDP L+ Sbjct: 200 EKVASRLIFIDKGRIAEDGDPQVLIK 225 >gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional. Length = 343 Score = 138 bits (351), Expect = 1e-33 Identities = 79/227 (34%), Positives = 120/227 (52%), Gaps = 19/227 (8%) Query: 1 MIKLDHLIYCYDNLKMQF------DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRG 54 MI+L ++ + + E ++G SGAGKSTL+ + + PT G Sbjct: 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG 60 Query: 55 SIFLNGQNHTRSSPS-----KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQ 109 + ++GQ+ T S +R + ++FQ NL S TV+ N+AL P L L A+ Sbjct: 61 RVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVAL---P-LELAGTPKAE 116 Query: 110 VKQ----MLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALR 165 +K +LE V L D +R+P+Q+SGGQ+QRVA+AR L +LL DE + DPA Sbjct: 117 IKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 Query: 166 HEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDG 212 IL LLK + E LT+++I+H ++ +I R VI G++V G Sbjct: 177 RSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQG 223 >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 Score = 138 bits (348), Expect = 2e-33 Identities = 69/221 (31%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 2 IKLDHLIYCY--DNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYP--TRGSIF 57 I++DHL Y + + ++ E + ++G SG GK+TLL +AGF G I Sbjct: 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIA 65 Query: 58 LNGQNHTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKV 117 + ++ T + P KR L++LFQ LF HL V N+A G+ +V L+ V Sbjct: 66 IADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLV 125 Query: 118 FLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCD 177 L D P+Q+SGG +QR+A+AR + + +LLLDEP + D +R + + + + Sbjct: 126 GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHE 185 Query: 178 E-RQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217 E +LT+L ++H+ +D++ +A + ++ G++ G+P L Sbjct: 186 ELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226 >gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 258 Score = 136 bits (345), Expect = 5e-33 Identities = 73/206 (35%), Positives = 112/206 (54%), Gaps = 10/206 (4%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK--RPLSIL 76 + E + ILGP+GAGKSTLL ++G P G + LNG+ SP++ R ++L Sbjct: 22 SLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 Query: 77 FQENNL-FSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQR 135 Q ++L F TV + +A+G AP+ A V L +V L R Q+SGG++ Sbjct: 82 PQHSSLSFP-FTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQ 140 Query: 136 QRVALARCLIR------QKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189 QRV LAR L + LLLDEP + D A +H +L L +Q+ ER L ++++ H+ Sbjct: 141 QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHD 200 Query: 190 LEDSMQIATRFIVIAGGQIVYDGDPD 215 L + + A R +++ G++V DG P Sbjct: 201 LNLAARYADRIVLLHQGRLVADGTPA 226 >gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694 Score = 135 bits (343), Expect = 7e-33 Identities = 73/216 (33%), Positives = 112/216 (51%), Gaps = 25/216 (11%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLSILF 77 + E++ I+G G+GKSTLL L+ G PT GS+ L+G + + P+ +R + + Sbjct: 486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVP 545 Query: 78 QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPS--------- 128 Q+ LF + T+ NIALG AP + ++ + E + +F R P Sbjct: 546 QDPRLF-YGTLRDNIALG-AP-----YADDEEILRAAELAGVTEFVRRHPDGLDMQIGER 598 Query: 129 --QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMI 186 +SGGQRQ VALAR L+R PILLLDEP + D LK+ + TL+++ Sbjct: 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGK--TLVLV 656 Query: 187 SHNLEDSM-QIATRFIVIAGGQIVYDGDPDRLMNGL 221 +H S+ + R IV+ G+IV DG D+++ L Sbjct: 657 THRT--SLLDLVDRIIVMDNGRIVADGPKDQVLEAL 690 >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. Length = 214 Score = 135 bits (341), Expect = 1e-32 Identities = 70/199 (35%), Positives = 110/199 (55%), Gaps = 16/199 (8%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN----HTRSSPS-KRPL 73 + K E + + GPSGAGK+TLL L+ G P+RG + + G++ R P +R + Sbjct: 22 SLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 Query: 74 SILFQENNLFSHLTVWQNIAL-----GIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPS 128 ++FQ+ L TV++N+AL G Q +V L +V LE + FP Sbjct: 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKERE----IQR-RVGAALRQVGLEHKADAFPE 136 Query: 129 QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISH 188 Q+SGG++QRVA+AR ++ P+LL DEP DP L IL LLK++ R T+++ +H Sbjct: 137 QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATH 195 Query: 189 NLEDSMQIATRFIVIAGGQ 207 +L ++A R I++ G+ Sbjct: 196 DLSLVDRVAHRVIILDDGR 214 >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional. Length = 351 Score = 132 bits (333), Expect = 1e-31 Identities = 71/206 (34%), Positives = 121/206 (58%), Gaps = 4/206 (1%) Query: 12 DNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKR 71 DNL + + + + +LGPSG GK+T+L L+AG + PT G IF++G++ T S +R Sbjct: 23 DNL----NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR 78 Query: 72 PLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMS 131 + ++FQ LF H+++ +N+ G+ + +VK+ LE V L F +R+ Q+S Sbjct: 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQIS 138 Query: 132 GGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLE 191 GGQ+QRVALAR LI + +LL DEP + D LR + ++++ + +T L ++H+ Sbjct: 139 GGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS 198 Query: 192 DSMQIATRFIVIAGGQIVYDGDPDRL 217 ++ ++ IV+ G+I+ G P L Sbjct: 199 EAFAVSDTVIVMNKGKIMQIGSPQEL 224 >gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 132 bits (333), Expect = 1e-31 Identities = 78/248 (31%), Positives = 135/248 (54%), Gaps = 21/248 (8%) Query: 2 IKLDHLIYCYDNLKMQFD--------FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTR 53 IK+++L + Y F+ ++ E + ++G +G+GKSTL+ + G PT Sbjct: 3 IKIENLTHIY-MEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61 Query: 54 GSIFLNGQNHTRSSPS----KRPLSILFQ--ENNLFSHLTVWQNIALGIAPNLRL-DHYQ 106 G I ++G + T ++ + ++FQ E LF T+ ++IA G NL L + Sbjct: 62 GKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE-TIEKDIAFGPI-NLGLSEEEI 119 Query: 107 HAQVKQMLEKVFL--EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPAL 164 +VK+ + V L ED+ ++ P ++SGGQ++RVA+A + + IL+LDEP A DP Sbjct: 120 ENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179 Query: 165 RHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGL-IP 223 R EIL +K++ E +T++++SH++ED ++A R IV+ G+ G P + + Sbjct: 180 RDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETL 239 Query: 224 ESTLLGIP 231 ES L +P Sbjct: 240 ESIGLAVP 247 >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. Length = 354 Score = 131 bits (332), Expect = 1e-31 Identities = 69/209 (33%), Positives = 113/209 (54%), Gaps = 14/209 (6%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRS------SPSKRP 72 DF + I G SG+GK+TL+ L+AG P G I LNG+ S P KR Sbjct: 17 DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRR 76 Query: 73 LSILFQENNLFSHLTVWQNIALGIA---PNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQ 129 + +FQE LF HL+V N+ G+ P+ R + +V ++L + R P + Sbjct: 77 IGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISF--ERVIELLG---IGHLLGRLPGR 131 Query: 130 MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189 +SGG++QRVA+ R L+ +LL+DEP A D ++EIL L+++ E + +L +SH+ Sbjct: 132 LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHS 191 Query: 190 LEDSMQIATRFIVIAGGQIVYDGDPDRLM 218 L++ +++A R +V+ G++ G + Sbjct: 192 LQEVLRLADRVVVLEDGRVAAAGPIAEVW 220 >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. Length = 230 Score = 130 bits (328), Expect = 4e-31 Identities = 66/191 (34%), Positives = 114/191 (59%), Gaps = 7/191 (3%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQ 78 + + + E I ++G SG GKSTLL+L++G PT G + L G+ T P + ++FQ Sbjct: 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM---VVFQ 61 Query: 79 ENNLFSHLTVWQNIALGI---APNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQR 135 +L LTV +NIAL + P+L + A V++ + V L + ++ P Q+SGG + Sbjct: 62 NYSLLPWLTVRENIALAVDRVLPDLSKSE-RRAIVEEHIALVGLTEAADKRPGQLSGGMK 120 Query: 136 QRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQ 195 QRVA+AR L + +LLLDEPF D R + L Q+ +E ++T+LM++H++++++ Sbjct: 121 QRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALL 180 Query: 196 IATRFIVIAGG 206 ++ R +++ G Sbjct: 181 LSDRVVMLTNG 191 >gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP) Family protein. Length = 216 Score = 129 bits (327), Expect = 5e-31 Identities = 76/213 (35%), Positives = 116/213 (54%), Gaps = 28/213 (13%) Query: 1 MIKLDHLIYCY--------DNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPT 52 MI+ + + Y DNL +F + K E + ++G SGAGKST L L+ G + PT Sbjct: 1 MIRFEQVSKAYPGGHQPALDNL----NFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT 56 Query: 53 RGSIFLNGQNHTRSSPSKRPL-----SILFQENNLFSHLTVWQNIALGIAPNLRLDHYQ- 106 RG I NGQ+ TR + P ++FQ++ L S TV+ N+A LR+ Sbjct: 57 RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFP----LRIIGVPP 112 Query: 107 ---HAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPA 163 + +V LEKV LE + P Q+SGG++QRVA+AR ++ + P+LL DEP DP Sbjct: 113 RDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPE 172 Query: 164 LRHEILGLLKQVCDERQLTLLMISH--NLEDSM 194 L +I+ L ++ + R T+L+ +H NL ++ Sbjct: 173 LSRDIMRLFEEF-NRRGTTVLVATHDINLVETY 204 >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 Score = 129 bits (326), Expect = 6e-31 Identities = 70/236 (29%), Positives = 118/236 (50%), Gaps = 22/236 (9%) Query: 2 IKLDHLIYCYDNLKM--QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLN 59 ++ + + L + +F V E++ ++GPSG+GKST+L ++ + G I + Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60 Query: 60 GQNHTRSSPSKRPL---------------SILFQENNLFSHLTVWQNIALGIAPNLRLDH 104 G+ PL ++FQ NLF H TV N+ AP L L Sbjct: 61 GEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTE--APVLVLGM 118 Query: 105 YQHAQVK---QMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFD 161 + K ++L+ V L D + P+Q+SGGQ+QRVA+AR L + ++L DE + D Sbjct: 119 ARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALD 178 Query: 162 PALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217 P L E+L +++++ E LT+L+++H + + + A R G+IV G PD + Sbjct: 179 PELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234 >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional. Length = 255 Score = 128 bits (324), Expect = 1e-30 Identities = 75/212 (35%), Positives = 114/212 (53%), Gaps = 13/212 (6%) Query: 1 MIKLDHLIYCYDNLKMQFD--FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFL 58 M+++ HL Y D + E +V+LGPSG GK+TLL+L+AGF GSI L Sbjct: 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60 Query: 59 NGQNHTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQ----VKQML 114 +G+ + ++FQ L V N+A G L+L + Q QML Sbjct: 61 DGKPVEGPGAER---GVVFQNEGLLPWRNVQDNVAFG----LQLAGVEKMQRLEIAHQML 113 Query: 115 EKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQ 174 +KV LE R+ Q+SGGQRQRV +AR L +LLLDEPF D R ++ LL + Sbjct: 114 KKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLK 173 Query: 175 VCDERQLTLLMISHNLEDSMQIATRFIVIAGG 206 + E +L+I+H++E+++ +AT ++++ G Sbjct: 174 LWQETGKQVLLITHDIEEAVFMATELVLLSPG 205 >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 Score = 128 bits (324), Expect = 1e-30 Identities = 71/219 (32%), Positives = 124/219 (56%), Gaps = 18/219 (8%) Query: 4 LDHLIYCYDNLKMQ--FD--FQVNKAERIVIL-GPSGAGKSTLLSLMAGFKYPTRGSIF- 57 L+H Y + +L+ Q FD ++N E IVIL GPSG+GK+TLL+L+ G + GS+ Sbjct: 7 LNHY-YGHGSLRKQVLFDINLEINPGE-IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKV 64 Query: 58 ----LNGQNHTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQVKQ 112 L G + +R + +FQ +NL LT QN+ + + L + + + + Sbjct: 65 LGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARA 124 Query: 113 MLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLL 172 MLE V L D + +P +SGGQ+QRVA+AR L+ + ++L DEP A D +++ L+ Sbjct: 125 MLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELM 184 Query: 173 KQVCDERQLTLLMISHNLEDS--MQIATRFIVIAGGQIV 209 +++ E+ T+L+++H D+ + +A R + + G+++ Sbjct: 185 QKLAREQGCTILIVTH---DNRILDVADRIVHMEDGKLL 220 >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional. Length = 400 Score = 126 bits (317), Expect = 5e-30 Identities = 68/204 (33%), Positives = 118/204 (57%), Gaps = 6/204 (2%) Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS------KRPLSI 75 + + E VI+G SG+GKST++ L+ PTRG + ++G + + S + ++ +++ Sbjct: 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAM 110 Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQR 135 +FQ L H+TV N A G+ + + L +V LE++ + +P ++SGG R Sbjct: 111 VFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMR 170 Query: 136 QRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQ 195 QRV LAR L ILL+DE F+ DP +R E+ L ++ + Q T++ ISH+L+++M+ Sbjct: 171 QRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMR 230 Query: 196 IATRFIVIAGGQIVYDGDPDRLMN 219 I R ++ G++V G PD ++N Sbjct: 231 IGDRIAIMQNGEVVQVGTPDEILN 254 >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional. Length = 369 Score = 125 bits (316), Expect = 8e-30 Identities = 66/205 (32%), Positives = 116/205 (56%), Gaps = 16/205 (7%) Query: 18 FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILF 77 + +++ E +V +GPSG GKSTLL ++AG + T G +F+ + P++R + ++F Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 Query: 78 QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVF----LEDFFNRFPSQMSGG 133 Q L+ HL+V +N++ G L+L + ++ Q + +V L +R P +SGG Sbjct: 82 QSYALYPHLSVAENMSFG----LKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGG 137 Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPAL----RHEILGLLKQVCDERQLTLLMISHN 189 QRQRVA+ R L+ + + LLDEP + D AL R EI L K++ T++ ++H+ Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL----GRTMIYVTHD 193 Query: 190 LEDSMQIATRFIVIAGGQIVYDGDP 214 ++M +A + +V+ G++ G P Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKP 218 >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional. Length = 242 Score = 124 bits (314), Expect = 2e-29 Identities = 77/227 (33%), Positives = 132/227 (58%), Gaps = 16/227 (7%) Query: 2 IKLDHLIYCYDNLKMQFD--FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLN 59 I+L+ + Y + FD + E +V+LGPSGAGKS+LL ++ + P G++ + Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62 Query: 60 GQNHTRSSPS--------KRPLSILFQENNLFSHLTVWQNIALGIAPN--LRLDHYQ-HA 108 G + S +R + ++FQ+ NL+ HLTV QN L AP L L Q A Sbjct: 63 GNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQN--LIEAPCRVLGLSKDQALA 120 Query: 109 QVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEI 168 + +++LE++ L+ + +RFP +SGGQ+QRVA+AR L+ + +LL DEP A DP + +I Sbjct: 121 RAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180 Query: 169 LGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPD 215 + +++++ E +T ++++H +E + + A+R + + G IV GD Sbjct: 181 VSIIREL-AETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 123 bits (311), Expect = 4e-29 Identities = 75/222 (33%), Positives = 130/222 (58%), Gaps = 12/222 (5%) Query: 2 IKLDHLIYCYDNLKMQ----FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIF 57 I+++H+ + Y + F V + E + I+G +G+GKSTL L+ G P G+I Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65 Query: 58 LNGQNHTRSS--PSKRPLSILFQE-NNLFSHLTVWQNIALGIAPN--LRLDHYQHAQVKQ 112 + G + + +R + ++FQ +N F TV ++A G+ R + + +V Q Sbjct: 66 VGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVE--RVDQ 123 Query: 113 MLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLL 172 L +V +EDF NR P ++SGGQ+QRVA+A L Q I++LDE ++ DP R E+L + Sbjct: 124 ALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETV 183 Query: 173 KQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDP 214 +Q+ +++ +T+L I+H+L+++ Q A R IV+ G+I+ +G P Sbjct: 184 RQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTP 224 >gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 529 Score = 122 bits (309), Expect = 7e-29 Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 21/184 (11%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-HTRSSPSKRPLSILF 77 + ER+ ILGPSG+GKSTLL L+ G P +G + L+G + + +R +S+ Sbjct: 355 SLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFA 414 Query: 78 QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP---------- 127 Q+ +LF TV N+ LG P+ ++ LE+V L D+ P Sbjct: 415 QDAHLFD-TTVRDNLRLG-RPDA-----TDEELWAALERVGLADWLRSLPDGLDTVLGEG 467 Query: 128 -SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMI 186 +++SGG+RQR+ALAR L+ PILLLDEP D E+L L + T+++I Sbjct: 468 GARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGK--TVVVI 525 Query: 187 SHNL 190 +H+L Sbjct: 526 THHL 529 >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 Score = 121 bits (306), Expect = 1e-28 Identities = 69/188 (36%), Positives = 108/188 (57%), Gaps = 5/188 (2%) Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS-----KRPLSILFQENNLFS 84 ++G SGAGKSTL+ + + PT GS+ ++GQ+ T S S +R + ++FQ NL S Sbjct: 36 VIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95 Query: 85 HLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCL 144 TV+ N+AL + + +V ++L V L D + +PS +SGGQ+QRVA+AR L Sbjct: 96 SRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARAL 155 Query: 145 IRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIA 204 +LL DE + DPA IL LLK++ LT+L+I+H ++ +I VI+ Sbjct: 156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVIS 215 Query: 205 GGQIVYDG 212 G+++ G Sbjct: 216 NGELIEQG 223 >gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 588 Score = 119 bits (302), Expect = 4e-28 Identities = 75/223 (33%), Positives = 111/223 (49%), Gaps = 24/223 (10%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLSIL 76 +F + +RI ++GPSGAGK++LL+ + GF P +GS+ +NG P ++ LS + Sbjct: 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGF-LPYQGSLKINGIELRELDPESWRKHLSWV 428 Query: 77 FQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP--------- 127 Q L H T+ N+ LG P+ Q++Q LE ++ +F P Sbjct: 429 GQNPQLP-HGTLRDNVLLG-NPDA-----SDEQLQQALENAWVSEFLPLLPQGLDTPIGD 481 Query: 128 --SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLM 185 + +S GQ QR+ALAR L++ +LLLDEP A D ++ L R+ T LM Sbjct: 482 QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA--SRRQTTLM 539 Query: 186 ISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGLIPESTLL 228 ++H LED Q V+ GQIV GD L +TLL Sbjct: 540 VTHQLEDLAQWDQ-IWVMQDGQIVQQGDYAELSQAGGLFATLL 581 >gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. Length = 206 Score = 119 bits (301), Expect = 5e-28 Identities = 64/197 (32%), Positives = 107/197 (54%), Gaps = 15/197 (7%) Query: 2 IKLDHLIYCYDNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ 61 D +I D+L + + K + I+G SG+GKSTLL+++ + G ++LNG+ Sbjct: 7 KFGDKIIL--DDLNLTIE----KGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGK 60 Query: 62 NHTRSSPSKR------PLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQ-VKQML 114 + K L LFQ L + TV +N+ LG+ +L + + K+ L Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLK-YKKLSKKEKREKKKEAL 119 Query: 115 EKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQ 174 EKV L + ++SGG++QRVALAR +++ P++L DEP DP R E+L LL + Sbjct: 120 EKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLE 179 Query: 175 VCDERQLTLLMISHNLE 191 + DE + T+++++H+ E Sbjct: 180 LNDEGK-TIIIVTHDPE 195 >gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 Score = 118 bits (298), Expect = 1e-27 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 22/189 (11%) Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSIL 76 F V ER+ ++GPSGAGKSTLL+L+ GF PT GSI +NG + I Sbjct: 340 PVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399 Query: 77 F--QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP------- 127 + Q LF+ T+ +NI L R D A++++ LE+ L++F P Sbjct: 400 WVPQHPFLFAG-TIAENIRLA-----RPDA-SDAEIRRALERAGLDEFVAALPQGLDTLI 452 Query: 128 ----SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183 + +SGGQ QR+ALAR +R P+LLLDEP A D + L+ + R T+ Sbjct: 453 GEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGR--TV 510 Query: 184 LMISHNLED 192 L+++H L Sbjct: 511 LLVTHRLAL 519 >gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. Length = 382 Score = 117 bits (296), Expect = 2e-27 Identities = 63/204 (30%), Positives = 114/204 (55%), Gaps = 10/204 (4%) Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-----HTRSSPSKRPL--- 73 + + E V++G SG+GKS+LL + G +RGS+ + + + + R L Sbjct: 47 IEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTH 106 Query: 74 --SILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMS 131 S++FQ+ L LTV +N+A G+ + + +V + LE V L + ++ P ++S Sbjct: 107 RVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELS 166 Query: 132 GGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLE 191 GG +QRV LAR ILL+DEPF+ DP +R ++ L ++ + T++ +SH+L+ Sbjct: 167 GGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD 226 Query: 192 DSMQIATRFIVIAGGQIVYDGDPD 215 ++++I R ++ GG+I+ G P+ Sbjct: 227 EALKIGNRIAIMEGGRIIQHGTPE 250 >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 Score = 117 bits (296), Expect = 2e-27 Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 25/220 (11%) Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLS 74 + V E + ++GPSGAGKSTL L+ F P G I L+G + + P+ + ++ Sbjct: 358 GLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMA 417 Query: 75 ILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPS------ 128 ++ Q+ LF+ +V +NI G R D +V+ +F + P Sbjct: 418 LVPQDPVLFAA-SVMENIRYG-----RPDA-TDEEVEAAARAAHAHEFISALPEGYDTYL 470 Query: 129 -----QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183 +SGGQRQR+A+AR +++ PILLLDE + D + L+ + R T Sbjct: 471 GERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGR--TT 528 Query: 184 LMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLM--NGL 221 L+I+H L ++ A R +V+ G+IV G L+ GL Sbjct: 529 LIIAHRLA-TVLKADRIVVMDQGRIVAQGTHAELIAKGGL 567 >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 Score = 117 bits (295), Expect = 3e-27 Identities = 64/191 (33%), Positives = 106/191 (55%), Gaps = 7/191 (3%) Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-HTRSSPSK-RPLSILFQENNLFSHLT 87 +LGP+G+GKSTLL L+AG P G++ L G + H S ++ R ++++ Q+++ LT Sbjct: 32 LLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLT 91 Query: 88 VWQNIALGIAPNLRL----DHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARC 143 V +ALG P+ L + A V + L + L +R S +SGG+RQRV +AR Sbjct: 92 VRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARA 151 Query: 144 LIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVI 203 L ++ +LLLDEP D + E L L++++ +T++ H+L + +V+ Sbjct: 152 LAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT-GVTVVAALHDLNLAASYCDHVVVL 210 Query: 204 AGGQIVYDGDP 214 GG++V G P Sbjct: 211 DGGRVVAAGPP 221 >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. Length = 221 Score = 117 bits (295), Expect = 3e-27 Identities = 65/182 (35%), Positives = 101/182 (55%), Gaps = 12/182 (6%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRP------ 72 + K E + I+G SG+GKSTLL L+ G PT G + NGQ+ ++ S ++R Sbjct: 25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKK 84 Query: 73 LSILFQENNLFSHLTVWQNIALGIAPNL-RLDHYQHAQ--VKQMLEKVFLEDFFNRFPSQ 129 L ++Q ++L T +N+A+ P L + A+ +MLEKV LE N PS+ Sbjct: 85 LGFIYQFHHLLPDFTALENVAM---PLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSE 141 Query: 130 MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189 +SGG+RQRVA+AR L+ Q ++L DEP D I L+ ++ E + L+++H+ Sbjct: 142 LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD 201 Query: 190 LE 191 LE Sbjct: 202 LE 203 >gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 117 bits (295), Expect = 3e-27 Identities = 66/227 (29%), Positives = 130/227 (57%), Gaps = 10/227 (4%) Query: 1 MIKLDHLIYCYDNLKMQ----FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI 56 MIK++++ + Y N + F++N+ E + ILG +G+GKST+ ++ G P G I Sbjct: 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66 Query: 57 FLNGQNHTRSSPSK--RPLSILFQE-NNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQVKQ 112 ++G ++ + + + + I+FQ +N F TV +IA G+ N ++ + + Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLE-NKKVPPKKMKDIIDD 125 Query: 113 MLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLL 172 + +KV +ED+ ++ P +SGGQ+QRVA+A L I++ DE ++ DP + EI ++ Sbjct: 126 LAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM 185 Query: 173 KQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 + R+ TL+ I+H++++++ A + IV + G+++ G P ++N Sbjct: 186 VDLRKTRKKTLISITHDMDEAIL-ADKVIVFSEGKLIAQGKPKEILN 231 >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional. Length = 257 Score = 115 bits (290), Expect = 9e-27 Identities = 63/184 (34%), Positives = 102/184 (55%), Gaps = 9/184 (4%) Query: 28 IVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHLT 87 + ++G SG GKSTLL L+AG + P+ G + L G + ++ ++FQ+ L Sbjct: 41 VAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGT--APLAEAREDTRLMFQDARLLPWKK 97 Query: 88 VWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQ 147 V N+ LG+ R Q L V L D N +P+ +SGGQ+QRVALAR LI + Sbjct: 98 VIDNVGLGLKGQWR------DAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHR 151 Query: 148 KPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQ 207 +LLLDEP D R E+ L++ + + T+L+++H++ +++ +A R ++I G+ Sbjct: 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGK 211 Query: 208 IVYD 211 I D Sbjct: 212 IGLD 215 >gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional. Length = 356 Score = 115 bits (290), Expect = 1e-26 Identities = 69/200 (34%), Positives = 111/200 (55%), Gaps = 20/200 (10%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQ 78 D V E IV++GPSG GKSTLL ++AG + T G I++ G+ P+ R ++++FQ Sbjct: 24 DLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQ 83 Query: 79 ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQ----VKQMLEKVFLEDFFNRFPSQMSGGQ 134 L+ H++V +N+A G+ + + + ++LE LE +R P ++SGGQ Sbjct: 84 NYALYPHMSVRENMAYGLK-IRGMPKAEIEERVAEAARILE---LEPLLDRKPRELSGGQ 139 Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDPALRH----EILGLLKQVCDERQL--TLLMISH 188 RQRVA+ R ++R+ + L DEP + D LR EI L R+L T L ++H Sbjct: 140 RQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRL------HRRLKTTSLYVTH 193 Query: 189 NLEDSMQIATRFIVIAGGQI 208 + ++M +A R +V+ GG Sbjct: 194 DQVEAMTLADRVVVMNGGVA 213 >gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 574 Score = 114 bits (288), Expect = 2e-26 Identities = 68/216 (31%), Positives = 106/216 (49%), Gaps = 26/216 (12%) Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLS 74 Q+ E++ +LG +G GKSTLL L+ P +G I LNGQ S + ++ +S Sbjct: 358 GLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAIS 417 Query: 75 ILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPS------ 128 ++ Q +LFS T+ N+ L APN + ++L++V LE Sbjct: 418 VVSQRVHLFSA-TLRDNLLLA-APNA-----SDEALIEVLQQVGLEKLLEDDKGLNAWLG 470 Query: 129 ----QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLL 184 Q+SGG+++R+ +AR L+ P+LLLDEP D +IL LL + + T+L Sbjct: 471 EGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNK--TVL 528 Query: 185 MISHNLE--DSMQIATRFIVIAGGQIVYDGDPDRLM 218 MI+H L + R V+ GQI+ G L+ Sbjct: 529 MITHRLTGLEQFD---RICVMDNGQIIEQGTHQELL 561 >gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 230 Score = 114 bits (288), Expect = 2e-26 Identities = 61/204 (29%), Positives = 112/204 (54%), Gaps = 9/204 (4%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRP-LSILF 77 +V K E +LG +G GK+TLL + G GSI L+G++ T+ P +R I + Sbjct: 20 SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 Query: 78 --QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVF--LEDFFNRFPSQMSGG 133 Q +F LTV +N+ G+A R + ++ + ++F L++ R +SGG Sbjct: 80 VPQGREIFPRLTVEENLLTGLAALPR----RSRKIPDEIYELFPVLKEMLGRRGGDLSGG 135 Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDS 193 Q+Q++A+AR L+ + +LLLDEP P++ +I +++++ E + +L++ L+ + Sbjct: 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFA 195 Query: 194 MQIATRFIVIAGGQIVYDGDPDRL 217 ++A R+ V+ G++V G D L Sbjct: 196 RELADRYYVMERGRVVASGAGDEL 219 >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 114 bits (286), Expect = 3e-26 Identities = 68/226 (30%), Positives = 127/226 (56%), Gaps = 11/226 (4%) Query: 1 MIKLDHLIYCYDNLKMQFD-----FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGS 55 +I++ +L + Y + ++ F V + E + I+G +G+GKST + L+ G G Sbjct: 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63 Query: 56 IFLNGQNHTRSS--PSKRPLSILFQE-NNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQVK 111 I ++G T + + + ++FQ +N F TV ++A G+ N + H + +V Sbjct: 64 IIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLE-NKGIPHEEMKERVN 122 Query: 112 QMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGL 171 + LE V ++DF R P+++SGGQ+QRVA+A + + I++LDE ++ DP R E++ Sbjct: 123 EALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKT 182 Query: 172 LKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217 +K + D+ Q+T++ I+H+L D + ++ R +V+ GQ+ P L Sbjct: 183 IKGIRDDYQMTVISITHDL-DEVALSDRVLVMKNGQVESTSTPREL 227 >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. Length = 302 Score = 113 bits (285), Expect = 3e-26 Identities = 59/206 (28%), Positives = 107/206 (51%), Gaps = 14/206 (6%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK--RPLSIL 76 +F+V + E LGP+GAGK+T + ++ PT G+ + G + R P K R + I+ Sbjct: 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE-PRKVRRSIGIV 71 Query: 77 FQENNLFSHLTVWQNIAL-----GIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMS 131 Q ++ LT +N+ + G+ + + +++LE L + +R S Sbjct: 72 PQYASVDEDLTGRENLEMMGRLYGLPKDEA-----EERAEELLELFELGEAADRPVGTYS 126 Query: 132 GGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLE 191 GG R+R+ +A LI Q +L LDEP DP R I ++ + +E +T+L+ +H +E Sbjct: 127 GGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLTTHYME 185 Query: 192 DSMQIATRFIVIAGGQIVYDGDPDRL 217 ++ ++ R +I G+I+ +G P+ L Sbjct: 186 EADKLCDRIAIIDHGRIIAEGTPEEL 211 >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 275 Score = 113 bits (284), Expect = 5e-26 Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 17/226 (7%) Query: 1 MIKLDHLIYCYDN----LKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI 56 +++ L Y Y + LK +F+ K E + +LGP+GAGKSTL G PT G + Sbjct: 1 ILETRDLKYSYPDGTEALK-GINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59 Query: 57 FLNGQNHTRSSPS----KRPLSILFQ--ENNLFSHLTVWQNIALGIAP-NLRLDHYQ-HA 108 + G+ S ++ + I+FQ ++ LF+ TV +++A G P NL L + Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP-TVEEDVAFG--PLNLGLSKEEVEK 116 Query: 109 QVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEI 168 +VK+ L+ V +E F N+ P +SGGQ++RVA+A L + I++LDEP + DP +I Sbjct: 117 RVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQI 176 Query: 169 LGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDP 214 + LL + ++ +T+++ +H+++ A + V++ G+I+ +G P Sbjct: 177 MKLLYDL-NKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTP 221 >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional. Length = 250 Score = 112 bits (281), Expect = 1e-25 Identities = 69/214 (32%), Positives = 112/214 (52%), Gaps = 20/214 (9%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLS---- 74 D +V E + I+GPSG+GK+TLL + + P G+I + G ++ R LS Sbjct: 23 DLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV-GDITIDTA---RSLSQQKG 78 Query: 75 ----------ILFQENNLFSHLTVWQNIALGIAPNLRLDHYQH-AQVKQMLEKVFLEDFF 123 +FQ NLF H TV +NI G + A+ +++L KV L Sbjct: 79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE 138 Query: 124 NRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183 +P ++SGGQ+QRVA+AR L + ++L DEP + DP L E+L ++Q+ E++ T+ Sbjct: 139 TSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKR-TM 197 Query: 184 LMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217 ++++H + + +A R I + G+IV G L Sbjct: 198 VIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231 >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. Length = 571 Score = 110 bits (278), Expect = 2e-25 Identities = 67/219 (30%), Positives = 116/219 (52%), Gaps = 24/219 (10%) Query: 18 FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN--HTRSSPSKRPLSI 75 + E + ++G SG+GKSTL++L+ F P G I L+G + + +R +++ Sbjct: 351 ISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVAL 410 Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP-------- 127 + Q+ LF+ T+ NIA G R + A++++ L + +DF ++ P Sbjct: 411 VSQDVVLFND-TIANNIAYG-----RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIG 464 Query: 128 ---SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLL 184 +SGGQRQR+A+AR L++ PIL+LDE + D + L+++ R T L Sbjct: 465 ENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGR--TTL 522 Query: 185 MISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLM--NGL 221 +I+H L +++ A R +V+ G+IV G + L+ NGL Sbjct: 523 VIAHRLS-TIEKADRIVVMDDGRIVERGTHNELLARNGL 560 >gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional. Length = 529 Score = 110 bits (276), Expect = 4e-25 Identities = 72/215 (33%), Positives = 119/215 (55%), Gaps = 21/215 (9%) Query: 20 FQVNKAERIVILGPSGAGKST----LLSLMAGFKYPTRGSIFLNGQ-----NHTRSSPSK 70 F + E + ++G SG+GKST LL L+ ++G I+ +GQ N + P + Sbjct: 307 FTLRPGETLGLVGESGSGKSTTGLALLRLIN-----SQGEIWFDGQPLHNLNRRQLLPVR 361 Query: 71 RPLSILFQENN--LFSHLTVWQNIALGIA---PNLRLDHYQHAQVKQMLEKVFLE-DFFN 124 + ++FQ+ N L L V Q I G+ P L + QV ++E+V L+ + + Sbjct: 362 HRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQ-REQQVIAVMEEVGLDPETRH 420 Query: 125 RFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLL 184 R+P++ SGGQRQR+A+AR LI + +++LDEP + D ++ +IL LLK + + QL L Sbjct: 421 RYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYL 480 Query: 185 MISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 ISH+L + + IV+ G++V GD +R+ Sbjct: 481 FISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFA 515 Score = 77.4 bits (191), Expect = 3e-15 Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 21/219 (9%) Query: 20 FQVNKAERIVILGPSGAGKS-TLLSLMAGFKYP----TRGSIFLNGQNHTRSSPSK---- 70 Q+ E + ++G SG+GKS T LS++ P G I +G++ +S Sbjct: 30 LQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGV 89 Query: 71 --RPLSILFQENNLFSHLTVWQNIALGIAPNLRLD-----HYQHAQVKQMLEKVFLEDFF 123 ++++FQE L + + L L ++ L++V + Sbjct: 90 RGNKIAMIFQEP--MVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA 147 Query: 124 NR---FPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQ 180 R +P Q+SGG+RQRV +A L+ + +L+ DEP D +++ +IL LL+++ E Sbjct: 148 KRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELN 207 Query: 181 LTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 + LL I+HNL ++A R V+ G+ V L + Sbjct: 208 MGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFS 246 >gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional. Length = 269 Score = 109 bits (275), Expect = 6e-25 Identities = 64/209 (30%), Positives = 107/209 (51%), Gaps = 14/209 (6%) Query: 21 QVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-----HTRSSPSKRPLSI 75 V + + I+GPSG GK+TLL L+ G P G I +G+N +R ++ +S+ Sbjct: 29 TVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSM 88 Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRL-DHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQ 134 LFQ LF+ + V+ N+A + + +L H+ V LE V L PS++SGG Sbjct: 89 LFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGM 148 Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQ----LTLLMISHNL 190 +R ALAR + + +++ DEPF DP +G+L ++ E +T +++SH++ Sbjct: 149 ARRAALARAIALEPDLIMFDEPFVGQDPI----TMGVLVKLISELNSALGVTCVVVSHDV 204 Query: 191 EDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 + + IA ++A +IV G L Sbjct: 205 PEVLSIADHAYIVADKKIVAHGSAQALQA 233 >gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 109 bits (274), Expect = 7e-25 Identities = 68/235 (28%), Positives = 131/235 (55%), Gaps = 31/235 (13%) Query: 1 MIKLDHLIYCYDNLKMQ--------FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPT 52 MIK ++ Y Y++ + + +V K E +VILG +G+GKST+ M P+ Sbjct: 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63 Query: 53 RGSIFLNG-----QNHTRSSPSKRPLSILFQ--ENNLFSHLTVWQNIA-----LGIAPN- 99 G ++++G + + +K + +FQ +N + + + V +++A LGI P Sbjct: 64 EGKVYVDGLDTSDEENLWDIRNKAGM--VFQNPDNQIVATI-VEEDVAFGPENLGIPPEE 120 Query: 100 LRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAV 159 +R +V + L+KV + ++ P +SGGQ+QRVA+A L + ++ DEP A+ Sbjct: 121 IR------ERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAM 174 Query: 160 FDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDP 214 DP+ R E++ +K++ + +T+++I+H +E++++ A R IV+ G++V +G P Sbjct: 175 LDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTP 228 >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional. Length = 352 Score = 108 bits (273), Expect = 1e-24 Identities = 60/186 (32%), Positives = 105/186 (56%), Gaps = 12/186 (6%) Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ------NHTRSSPSKRPLSILFQENNLF 83 I G SGAGK++L++ ++G P +G I LNG+ P KR + +FQ+ LF Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLF 88 Query: 84 SHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARC 143 H V N+ G+A + Q ++ +L +E +R+P +SGG++QRVA+ R Sbjct: 89 PHYKVRGNLRYGMAKS---MVAQFDKIVALLG---IEPLLDRYPGSLSGGEKQRVAIGRA 142 Query: 144 LIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVI 203 L+ +LL+DEP A D + E+L L+++ E + +L +SH+L++ +++A R +V+ Sbjct: 143 LLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVL 202 Query: 204 AGGQIV 209 G++ Sbjct: 203 EQGKVK 208 >gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 290 Score = 108 bits (272), Expect = 1e-24 Identities = 71/219 (32%), Positives = 122/219 (55%), Gaps = 23/219 (10%) Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFL------NGQNHTRSSPSKRPLSILFQ--ENN 81 I+G +G+GKSTLL + G PT G++ + G+ + + P ++ + I+FQ E+ Sbjct: 38 IIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQ 97 Query: 82 LFSHLTVWQNIALGIAP-NLRL-DHYQHAQVKQMLEKVFL-EDFFNRFPSQMSGGQRQRV 138 LF TV ++I G P N + + + ++M+E V L E+ R P ++SGGQ +RV Sbjct: 98 LFEE-TVEKDICFG--PMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRV 154 Query: 139 ALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIAT 198 A+A L + +L+LDEP A DP R E++ + ++ E+ LT ++++H++ED+ + A Sbjct: 155 AIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYAD 214 Query: 199 RFIVIAGGQIVYDG-------DPDRLMN-GL-IPESTLL 228 + +V+ G + G DPD L GL +PE+ Sbjct: 215 QIVVMHKGTVFLQGTPREIFADPDELEAIGLDLPETVKF 253 >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional. Length = 257 Score = 107 bits (269), Expect = 2e-24 Identities = 68/226 (30%), Positives = 120/226 (53%), Gaps = 20/226 (8%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS---------- 69 Q N + I I+G SG+GKST L + + P+ GSI +NGQ Sbjct: 26 LQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKN 85 Query: 70 -----KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLD-HYQHAQVKQMLEKVFLEDFF 123 + L+++FQ NL+SH+TV +N+ L L + + L KV +++ Sbjct: 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA 145 Query: 124 N-RFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLT 182 ++P +SGGQ+QRV++AR L + +LL DEP + DP L E+L +++Q+ +E + T Sbjct: 146 QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGK-T 204 Query: 183 LLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGLIPESTLL 228 +++++H + + +++ I + G+I +G P++L P+S L Sbjct: 205 MVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN--PQSPRL 248 >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 255 Score = 107 bits (269), Expect = 3e-24 Identities = 68/235 (28%), Positives = 123/235 (52%), Gaps = 29/235 (12%) Query: 13 NLKMQF---------DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNH 63 L M+F + +V + E + ++GP+GAGK+T+ + + GF PT G+I L GQ H Sbjct: 10 GLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQ-H 68 Query: 64 TRSSPS----KRPLSILFQENNLFSHLTVWQNIALG---------IAPNLRLDHYQHAQV 110 P + + FQ LF +TV +N+ + + L+ ++ A+ Sbjct: 69 IEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAES 128 Query: 111 KQM------LEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPAL 164 + + LE+V L + NR ++ GQ++R+ +ARC++ Q IL+LDEP A +P Sbjct: 129 EALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKE 188 Query: 165 RHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 E+ L+ ++ +E +T+L+I H+++ M I+ R V+ G + +G P+ + N Sbjct: 189 TKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN 243 >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. Length = 190 Score = 105 bits (265), Expect = 8e-24 Identities = 55/180 (30%), Positives = 105/180 (58%), Gaps = 10/180 (5%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ--NHTRSS--PSKRPLS 74 +F + E + +LG +GAGKSTLL + G P G++ ++G+ +++R ++ + Sbjct: 12 NFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVG 71 Query: 75 ILFQ--ENNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQVKQMLEKVFLEDFFNRFPSQMS 131 ++FQ ++ LF+ V Q++A G NL L + +V++ L V R +S Sbjct: 72 LVFQDPDDQLFAA-DVDQDVAFGPL-NLGLSEAEVERRVREALTAVGASGLRERPTHCLS 129 Query: 132 GGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLE 191 GG+++RVA+A + + +LLLDEP A DPA R ++L +L+++ E +T+++ +H+++ Sbjct: 130 GGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE-GMTVVISTHDVD 188 >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. Length = 520 Score = 105 bits (264), Expect = 8e-24 Identities = 65/216 (30%), Positives = 115/216 (53%), Gaps = 13/216 (6%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI-FLNGQ---NHTRSSP-----S 69 +V + E I+G SGAGK+TL ++AG PT G + G + T+ P + Sbjct: 304 SLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRA 363 Query: 70 KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLED----FFNR 125 KR + IL QE +L+ H TV N+ I L + + V + F E+ ++ Sbjct: 364 KRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDK 423 Query: 126 FPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLM 185 +P ++S G+R RVALA+ LI++ I++LDEP DP + ++ + + +E + T ++ Sbjct: 424 YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFII 483 Query: 186 ISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGL 221 +SH+++ + + R ++ G+IV GDP+ ++ L Sbjct: 484 VSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEEL 519 Score = 76.4 bits (188), Expect = 6e-15 Identities = 64/258 (24%), Positives = 102/258 (39%), Gaps = 53/258 (20%) Query: 12 DNLKMQFD---------FQVNKAERIVILGPSGAGKSTLLSLMAGFK--YPTRGSI---- 56 NL +FD F + + E + ILG SGAGKS L+ ++ G PT G I Sbjct: 4 KNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHV 63 Query: 57 --------------------------------FLNGQNHTRSSPSKRPLSILFQEN-NLF 83 F N + R KR ++I+ Q L+ Sbjct: 64 ALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKR-IAIMLQRTFALY 122 Query: 84 SHLTVWQNI--ALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALA 141 TV N+ AL + A ++E V L +SGG++QRV LA Sbjct: 123 GDDTVLDNVLEALEEIGYEGKEAVGRAV--DLIEMVQLSHRITHIARDLSGGEKQRVVLA 180 Query: 142 RCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFI 201 R L ++ + L DEP DP + L++ +++++ SH E ++ + I Sbjct: 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI 240 Query: 202 VIAGGQIVYDGDPDRLMN 219 + G+I +G PD ++ Sbjct: 241 WLENGEIKEEGTPDEVVA 258 >gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 105 bits (264), Expect = 9e-24 Identities = 67/239 (28%), Positives = 131/239 (54%), Gaps = 13/239 (5%) Query: 2 IKLDHLIYCYDNLKMQFD---FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFL 58 I+++ L + Y + + + + +LGP+GAGKSTLL + G P RG + + Sbjct: 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKV 64 Query: 59 NGQNHTRSSPS--KRPLSILFQE--NNLFSHLTVWQNIALGIAP-NLRLDHYQ-HAQVKQ 112 G+ + + + ++FQ+ + +FS TVW ++A G P N+ LD + +V++ Sbjct: 65 MGREVNAENEKWVRSKVGLVFQDPDDQVFS-STVWDDVAFG--PVNMGLDKDEVERRVEE 121 Query: 113 MLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLL 172 L+ V + DF ++ P +S GQ++RVA+A L +++LDEP A DP + ++ +L Sbjct: 122 ALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEIL 181 Query: 173 KQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGLIPESTLLGIP 231 ++ + T+++ +H+++ + + A + IV+ G+++ +GD L + I E L +P Sbjct: 182 DRL-HNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGLRLP 239 >gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional. Length = 327 Score = 104 bits (261), Expect = 2e-23 Identities = 62/211 (29%), Positives = 110/211 (52%), Gaps = 13/211 (6%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPL-----S 74 F + + + + ++G SG GKSTL L+ + PT G ++ GQ+ ++ P + L Sbjct: 36 FTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQ 95 Query: 75 ILFQENNLFSHL----TVWQNIALGIAPNLRLDHYQH-AQVKQMLEKVFLE-DFFNRFPS 128 I+FQ N + L V Q + + N L + + M+ KV L + ++R+P Sbjct: 96 IVFQ--NPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPH 153 Query: 129 QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISH 188 SGGQRQR+A+AR L+ +++ DEP + D +++ ++L L+ + E L+ + ISH Sbjct: 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISH 213 Query: 189 NLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 +L IA +V+ G+ V G +++ N Sbjct: 214 DLSVVEHIADEVMVMYLGRCVEKGTKEQIFN 244 >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 269 Score = 104 bits (260), Expect = 2e-23 Identities = 61/203 (30%), Positives = 110/203 (54%), Gaps = 4/203 (1%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ--NHTRSSPSKRPLSILF 77 F + K + I+G +G+GKST+ LM G + G IF N Q ++ + I+F Sbjct: 30 FNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVF 89 Query: 78 QE-NNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQ 136 Q +N F V ++A G+ + H +V + L++V + + + P+ +SGGQ+Q Sbjct: 90 QNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQ 149 Query: 137 RVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQI 196 RVA+A L +++LDE ++ DP R +L L+++V E +T++ I+H+L ++M+ Sbjct: 150 RVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME- 208 Query: 197 ATRFIVIAGGQIVYDGDPDRLMN 219 A IV+ G + +G P + + Sbjct: 209 ADHVIVMNKGTVYKEGTPTEIFD 231 >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 103 bits (258), Expect = 5e-23 Identities = 66/204 (32%), Positives = 113/204 (55%), Gaps = 7/204 (3%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSS--PSKRPLSIL 76 +F + RI ++GP+GAGKSTL G PT GS+ + G+ T+ + ++ + ++ Sbjct: 24 NFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLV 83 Query: 77 FQ--ENNLFSHLTVWQNIALGIAPNLRLDHYQHA-QVKQMLEKVFLEDFFNRFPSQMSGG 133 FQ ++ +FS TV Q+IA G NL LD A +V L + LE+ +R P +SGG Sbjct: 84 FQNPDDQIFSP-TVEQDIAFG-PINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGG 141 Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDS 193 +++RVA+A + + +L+LDEP A DP E++ L + + +T++ +H L+ Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLV 201 Query: 194 MQIATRFIVIAGGQIVYDGDPDRL 217 ++A V+ G+IV G + + Sbjct: 202 PEMADYIYVMDKGRIVAYGTVEEI 225 >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional. Length = 648 Score = 103 bits (258), Expect = 5e-23 Identities = 66/204 (32%), Positives = 112/204 (54%), Gaps = 22/204 (10%) Query: 21 QVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSIL---- 76 + E + I+G SG+GKSTL++++ PT G+ + GQ+ ++ L+ L Sbjct: 30 DIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQD--VATLDADALAQLRREH 87 Query: 77 ----FQENNLFSHLTVWQNIAL-----GIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP 127 FQ +L SHLT QN+ + G+ RL + +++L+++ LED P Sbjct: 88 FGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRL-----LRAQELLQRLGLEDRVEYQP 142 Query: 128 SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMIS 187 SQ+SGGQ+QRV++AR L+ ++L DEP D E++ +L Q+ D R T+++++ Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVT 201 Query: 188 HNLEDSMQIATRFIVIAGGQIVYD 211 H+ + + Q A R I I G+IV + Sbjct: 202 HDPQVAAQ-AERVIEIRDGEIVRN 224 >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 102 bits (255), Expect = 8e-23 Identities = 65/226 (28%), Positives = 126/226 (55%), Gaps = 9/226 (3%) Query: 1 MIKLDHLIYCYD-----NLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGS 55 ++++++L++ Y+ N F + K E + I+G +G+GKST L+ G G Sbjct: 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK 63 Query: 56 IFLNGQNHTRSS--PSKRPLSILFQE-NNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQ 112 + ++G+ T + +R + ++FQ +N F TV ++A G+ +V + Sbjct: 64 VKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDE 123 Query: 113 MLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLL 172 L V + DF R P+++SGGQ+QRVA+A + + I++LDE ++ DP R EI+ ++ Sbjct: 124 ALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI 183 Query: 173 KQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLM 218 ++ ++ QLT+L I+H+L+++ + R +V+ G+I+ + P L Sbjct: 184 HEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELF 228 >gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed. Length = 402 Score = 102 bits (255), Expect = 9e-23 Identities = 62/208 (29%), Positives = 113/208 (54%), Gaps = 19/208 (9%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-HTRSSPS-KRPLSIL 76 D V + + ++GP+GAGK+TLL + G PT G++ + G + S+ + R ++ + Sbjct: 23 DLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV 82 Query: 77 FQENNLFSHLTVWQNIALGIAPNL----RLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSG 132 Q+ +L V Q + +G P+ A V++ +E+ + F +R + +SG Sbjct: 83 PQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSG 142 Query: 133 GQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEI--LGLLKQVCDERQLTLLMISHNL 190 G+RQRV LAR L + P+LLLDEP A D + H++ L L++++ D+ + + I H+L Sbjct: 143 GERQRVLLARALAQATPVLLLDEPTASLD--INHQVRTLELVRRLVDDGKTAVAAI-HDL 199 Query: 191 EDSMQIATRF----IVIAGGQIVYDGDP 214 + +A R+ +++A G++ G P Sbjct: 200 D----LAARYCDELVLLADGRVRAAGPP 223 >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional. Length = 255 Score = 102 bits (256), Expect = 9e-23 Identities = 60/197 (30%), Positives = 107/197 (54%), Gaps = 7/197 (3%) Query: 28 IVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK--RPLSILFQENNLFSH 85 ++GP+G GKSTLL A P G++FL + + S + R L++L Q + Sbjct: 31 TALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEG 90 Query: 86 LTVWQNIALGIAPNL----RLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALA 141 +TV + +A G +P L RL +A+V Q +E+ + +R + +SGGQRQR LA Sbjct: 91 ITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLA 150 Query: 142 RCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFI 201 L + P++LLDEP D + E++ L++++ + + T++ + H+L + + + Sbjct: 151 MVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGK-TVVTVLHDLNQASRYCDHLV 209 Query: 202 VIAGGQIVYDGDPDRLM 218 V+A G ++ G P+ +M Sbjct: 210 VLANGHVMAQGTPEEVM 226 >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 283 Score = 101 bits (254), Expect = 1e-22 Identities = 68/225 (30%), Positives = 121/225 (53%), Gaps = 14/225 (6%) Query: 1 MIKLDHLIYCYDN----LKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI 56 ++K++ L Y Y + LK + + K E ILG +GAGKSTL + G P+ G I Sbjct: 5 ILKVEELNYNYSDGTHALK-GININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63 Query: 57 FLNGQNHTRSSPS----KRPLSILFQ--ENNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQ 109 +G+ S + + ++FQ +N LFS +V+Q+++ G A NL+L + + Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS-ASVYQDVSFG-AVNLKLPEDEVRKR 121 Query: 110 VKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEIL 169 V L++ +E ++ +S GQ++RVA+A L+ + +L+LDEP A DP EI+ Sbjct: 122 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181 Query: 170 GLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDP 214 LL ++ E LT+++ +H+++ V+ G+++ G+P Sbjct: 182 KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 226 >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional. Length = 222 Score = 101 bits (253), Expect = 1e-22 Identities = 64/198 (32%), Positives = 105/198 (53%), Gaps = 9/198 (4%) Query: 1 MIKLDHLIYCYDNLKMQF---DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIF 57 MI+ +H+ Y + F + E + G SGAGKSTLL L+ G + P+ G I+ Sbjct: 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60 Query: 58 LNGQNHTRSSPS-----KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQ 112 +G + TR +R + ++FQ+++L TV+ N+A+ + +V Sbjct: 61 FSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSA 120 Query: 113 MLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLL 172 L+KV L D FP Q+SGG++QRV +AR ++ + +LL DEP D AL IL L Sbjct: 121 ALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLF 180 Query: 173 KQVCDERQLTLLMISHNL 190 ++ + +T+LM +H++ Sbjct: 181 EEF-NRVGVTVLMATHDI 197 >gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 101 bits (253), Expect = 2e-22 Identities = 63/183 (34%), Positives = 101/183 (55%), Gaps = 8/183 (4%) Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSS--PSKRPLSILFQENNLFSHLT 87 I+GPSGAGKSTL+ L+ PT GSI ++G + +R + ++FQ+ +LF T Sbjct: 34 IVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEG-T 92 Query: 88 VWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLE-DFFNRFPSQMSGGQRQRVALARCLIR 146 V NI G P L+ + ++ V+ L V L ++ R +SGG+ QRV++AR L Sbjct: 93 VKDNIEYG--PMLKGE--KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLAN 148 Query: 147 QKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGG 206 +LLLDEP + DP I L+ ++ ++ LT++ I+HN+E + +I + G Sbjct: 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKG 208 Query: 207 QIV 209 +V Sbjct: 209 ILV 211 >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. Length = 223 Score = 101 bits (253), Expect = 2e-22 Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 13/207 (6%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQE 79 +K E + +LGP+GAGK+TLL + G P +G++ + G + R + + Q Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGAS---PGKGWRHIGYVPQR 57 Query: 80 NNLFS---HLTVWQNIALG----IAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSG 132 + F+ ++V + G I R A V+ L +V L + +R ++SG Sbjct: 58 HE-FAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSG 116 Query: 133 GQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLED 192 GQRQRV +AR L + +LLLDEPF D + + L ++ +LM +H+L Sbjct: 117 GQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA-GTAILMTTHDLAQ 175 Query: 193 SMQIATRFIVIAGGQIVYDGDPDRLMN 219 +M R +V+ G+++ DG P +L + Sbjct: 176 AMATCDR-VVLLNGRVIADGTPQQLQD 201 >gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 320 Score = 101 bits (252), Expect = 2e-22 Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 30/252 (11%) Query: 3 KLDHLIYCYDNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFL---- 58 K ++ + +N+ + F+ NK I+G SG+GKSTL++ G G+I + Sbjct: 34 KQENELVALNNI--SYTFEKNKI--YFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIY 89 Query: 59 ------NGQNHTRSSPSK--------RPLSILFQ--ENNLFSHLTVWQNIALGIAPNLRL 102 N + T K R +S++FQ E LF T+ ++I G L + Sbjct: 90 IGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFG-PVALGV 147 Query: 103 DHYQHAQ-VKQMLEKVFL-EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVF 160 + + K L K+ L + + R P +SGGQ++RVA+A L Q IL+ DEP A Sbjct: 148 KKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGL 207 Query: 161 DPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDP-DRLMN 219 DP HE++ L+ + T+ +I+H +E +++A IV+ G+I+ G P + + Sbjct: 208 DPKGEHEMMQLILDAKANNK-TVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTD 266 Query: 220 GLIPESTLLGIP 231 I ST + +P Sbjct: 267 QHIINSTSIQVP 278 >gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. Length = 236 Score = 101 bits (253), Expect = 2e-22 Identities = 64/207 (30%), Positives = 109/207 (52%), Gaps = 14/207 (6%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK--RPLSIL 76 F V E + +LGP+GAGKSTL SL+ G I + G + R +P L ++ Sbjct: 21 SFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHD-LRRAPRAALARLGVV 79 Query: 77 FQENNLFSHLTVWQNI----AL-GIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMS 131 FQ+ L L+V QN+ AL G++ ++ +L ++ L + + +++ Sbjct: 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAE-----ARERIAALLARLGLAERADDKVRELN 134 Query: 132 GGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLE 191 GG R+RV +AR L+ + +LLLDEP DPA R I+ ++ +C ++ L++L +H L Sbjct: 135 GGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATH-LV 193 Query: 192 DSMQIATRFIVIAGGQIVYDGDPDRLM 218 D ++ R +V+ G+++ DG L Sbjct: 194 DEIEADDRLVVLHRGRVLADGAAAELR 220 >gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 694 Score = 100 bits (252), Expect = 2e-22 Identities = 66/206 (32%), Positives = 106/206 (51%), Gaps = 23/206 (11%) Query: 26 ERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLSILFQENNLF 83 E I I+GPSG+GKSTL L+ P G + ++G + + P+ +R + ++ QEN LF Sbjct: 484 EFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLF 543 Query: 84 SHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP-----------SQMSG 132 S ++ NIAL P +H HA + DF + P + +SG Sbjct: 544 SR-SIRDNIALC-NPGAPFEHVIHAA-----KLAGAHDFISELPQGYNTEVGEKGANLSG 596 Query: 133 GQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLED 192 GQRQR+A+AR L+ IL+ DE + D I+ ++++C R T+++I+H L Sbjct: 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGR--TVIIIAHRL-S 653 Query: 193 SMQIATRFIVIAGGQIVYDGDPDRLM 218 +++ R IV+ GQI G + L+ Sbjct: 654 TVRACDRIIVLEKGQIAESGRHEELL 679 >gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 242 Score = 100 bits (252), Expect = 2e-22 Identities = 62/229 (27%), Positives = 114/229 (49%), Gaps = 24/229 (10%) Query: 12 DNLKMQFD---------FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN 62 + L + FD V+ E VI+GP+GAGK+T++ ++ G P GS+ G + Sbjct: 6 EGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTD 65 Query: 63 HTRSSPSKRP-LSI--LFQENNLFSHLTVWQN--IALGIAPNL------RLDHYQHAQVK 111 T + I FQ+ +F +LTV++N +AL ++ RL + +++ Sbjct: 66 LTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIE 125 Query: 112 QMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKP-ILLLDEPFAVFDPALRHEILG 170 ++LE + L D +R +S GQ+Q + + L+ Q P +LLLDEP A + Sbjct: 126 EVLETIGLADEADRLAGLLSHGQKQWLEIGMLLM-QDPKLLLLDEPVAGMTDEETEKTAE 184 Query: 171 LLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 LLK + + +++++ H++E IA + V+ G ++ +G D++ Sbjct: 185 LLKSLAGKH--SVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 100 bits (251), Expect = 3e-22 Identities = 67/214 (31%), Positives = 115/214 (53%), Gaps = 18/214 (8%) Query: 31 LGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK------RPLSILFQ--ENNL 82 +G +G+GKST++ L+ G PT+GS+ ++ T +S +K + + ++FQ E+ L Sbjct: 39 IGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQL 98 Query: 83 FSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFL----EDFFNRFPSQMSGGQRQRV 138 F TV +++A G N + Q EK+ L E F + P ++SGGQ +RV Sbjct: 99 FEE-TVLKDVAFG-PQNFGVS--QEEAEALAREKLALVGISESLFEKNPFELSGGQMRRV 154 Query: 139 ALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIAT 198 A+A L + IL+LDEP A DP R E++ L K++ + +T+++++H ++D A Sbjct: 155 AIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL-HQSGMTIVLVTHLMDDVANYAD 213 Query: 199 RFIVIAGGQIVYDGDPDRLMNGL-IPESTLLGIP 231 V+ G++V G P + + E LG+P Sbjct: 214 FVYVLEKGKLVLSGKPKDIFQDVDFLEEKQLGVP 247 >gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional. Length = 248 Score = 100 bits (252), Expect = 3e-22 Identities = 64/211 (30%), Positives = 110/211 (52%), Gaps = 12/211 (5%) Query: 18 FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK--RPLSI 75 +V E + ++GP+GAGKSTLL+ MAG P GSI GQ S ++ R + Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELARHRAY 73 Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQR 135 L Q+ + V+Q + L R + A + ++ E + L+D R +Q+SGG+ Sbjct: 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASA-LNEVAEALGLDDKLGRSVNQLSGGEW 132 Query: 136 QRVALARCLIRQKP-------ILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISH 188 QRV LA +++ P +LLLDEP D A + + LL ++C ++ + ++M SH Sbjct: 133 QRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELC-QQGIAVVMSSH 191 Query: 189 NLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 +L +++ A R ++ G+++ G D ++ Sbjct: 192 DLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708 Score = 99.8 bits (249), Expect = 5e-22 Identities = 65/234 (27%), Positives = 112/234 (47%), Gaps = 26/234 (11%) Query: 2 IKLDHLIYCY---DNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFL 58 I ++ + Y Y N+ + + I+G SG+GKSTL L+ GF G I L Sbjct: 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533 Query: 59 NGQNHTRSSPS--KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEK 116 NG + ++ ++ L QE +FS ++ +N+ LG N+ D ++ E Sbjct: 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKENVSQD-----EIWAACEI 587 Query: 117 VFLEDFFNRFP-----------SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALR 165 ++D P S +SGGQ+QR+ALAR L+ +L+LDE + D Sbjct: 588 AEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE 647 Query: 166 HEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 +I+ L + D+ T++ ++H L + Q + + IV+ G+I+ G D L++ Sbjct: 648 KKIVNNLLNLQDK---TIIFVAHRLSVAKQ-SDKIIVLDHGKIIEQGSHDELLD 697 >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional. Length = 262 Score = 99.3 bits (247), Expect = 8e-22 Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 25/223 (11%) Query: 19 DFQVNKAERIVILGPSGAGKSTLL----SLMAGFKYPTRGSIFLNGQNHTRSS------- 67 D ++ E + +LGPSG+GKSTLL L+ G K I L G+ R Sbjct: 24 DLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSA-GSHIELLGRTVQREGRLARDIR 82 Query: 68 PSKRPLSILFQENNLFSHLTVWQNI---ALGIAPNLR-----LDHYQHAQVKQMLEKVFL 119 S+ +FQ+ NL + L+V +N+ ALG P R Q + Q L +V + Sbjct: 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGM 142 Query: 120 EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDER 179 F ++ S +SGGQ+QRVA+AR L++Q ++L DEP A DP ++ L+ + Sbjct: 143 VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND 202 Query: 180 QLTLLMISHNLEDSMQIATRFIVIAGGQIVYDG-----DPDRL 217 +T+++ H ++ +++ R + + G + YDG D +R Sbjct: 203 GITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNERF 245 >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. Length = 265 Score = 98.7 bits (246), Expect = 1e-21 Identities = 60/200 (30%), Positives = 103/200 (51%), Gaps = 9/200 (4%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS-----KRPL 73 + + E + +LG SG GKSTL L+ G + P +G++ GQ+ + +R + Sbjct: 31 SLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDV 90 Query: 74 SILFQE--NNLFSHLTVWQNIALGIAPNLRLDHY-QHAQVKQMLEKVFLE-DFFNRFPSQ 129 ++FQ+ + + +TV Q I + LD Q A++ ++L+ V L + ++ P Q Sbjct: 91 QLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQ 150 Query: 130 MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189 +SGGQ QR+ +AR L + +++LDE + D L+ IL LL+++ L I+H+ Sbjct: 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD 210 Query: 190 LEDSMQIATRFIVIAGGQIV 209 L R V+ GQIV Sbjct: 211 LRLVQSFCQRVAVMDKGQIV 230 >gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif. Length = 686 Score = 98.5 bits (246), Expect = 1e-21 Identities = 75/235 (31%), Positives = 114/235 (48%), Gaps = 30/235 (12%) Query: 2 IKLDHLIYCYDNLKMQ-FD---FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIF 57 I++D + + Y D Q+ E + I+GPSG+GKSTLL L+ GF+ P GS+F Sbjct: 452 IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511 Query: 58 LNGQN--HTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLE 115 +GQ+ +R L ++ Q L S ++++NIA G AP L LD A Sbjct: 512 YDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIA-GGAP-LTLDEAWEA-----AR 563 Query: 116 KVFLEDFFNRFPSQM-----------SGGQRQRVALARCLIRQKPILLLDEPFAVFDPAL 164 L + P M SGGQRQR+ +AR L+R+ ILL DE + AL Sbjct: 564 MAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATS----AL 619 Query: 165 RHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 + ++ + + ++T ++I+H L A R V+ G++V G D LM Sbjct: 620 DNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDELMA 673 >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 Score = 97.5 bits (243), Expect = 3e-21 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 3/204 (1%) Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRP-LSI 75 + F+ K + LGP+GAGKST + ++ G+ P GS+ + G++ ++ + + Sbjct: 20 EVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY 79 Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQR 135 L + N L+ + V + + +V++M+E V L ++ Q+S G R Sbjct: 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYR 139 Query: 136 QRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQ 195 QRV LA+ LI +L+LDEP DP EI ++K + ++ T+++ +H +++ Sbjct: 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDK--TIILSTHIMQEVEA 197 Query: 196 IATRFIVIAGGQIVYDGDPDRLMN 219 I R I+I G+IV D D L Sbjct: 198 ICDRVIIINKGKIVADKKLDELSA 221 >gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein. Length = 711 Score = 97.5 bits (243), Expect = 3e-21 Identities = 67/215 (31%), Positives = 110/215 (51%), Gaps = 31/215 (14%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ-----NHTRSSPSKRPLS 74 F ++ E + ++GPSG+GKST+ +L+ PT G + L+G +H R ++ Sbjct: 502 FTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYL---HRQVA 558 Query: 75 ILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP------- 127 ++ QE LFS +V +NIA G L ++ + DF FP Sbjct: 559 LVGQEPVLFSG-SVRENIAYG------LTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEV 611 Query: 128 ----SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183 SQ+SGGQ+QR+A+AR L+R+ +L+LDE + AL E LL++ T+ Sbjct: 612 GEKGSQLSGGQKQRIAIARALVRKPRVLILDEATS----ALDAECEQLLQESRSRASRTV 667 Query: 184 LMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLM 218 L+I+H L +++ A + +V+ G +V G +LM Sbjct: 668 LLIAHRLS-TVERADQILVLKKGSVVEMGTHKQLM 701 >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 97.0 bits (241), Expect = 3e-21 Identities = 75/242 (30%), Positives = 129/242 (53%), Gaps = 15/242 (6%) Query: 1 MIKLDHLIYCYDN---LKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIF 57 MI+L+++ Y Y + + + K E I I+G +G+GKSTL + G P +G + Sbjct: 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60 Query: 58 LNGQNHTRSSPSKRP-----LSILFQE-NNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQV 110 ++G + SK + I+FQ F TV +++A G NL L + +V Sbjct: 61 VSGID--TGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG-PENLCLPPIEIRKRV 117 Query: 111 KQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILG 170 + L ++ LE + +R P +SGGQ Q VALA L + L+ DE ++ DP +L Sbjct: 118 DRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLE 177 Query: 171 LLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGLIPESTLLGI 230 +K++ E+ T++ I+HNLE+ + A R IV+ G+IV +G+P+ +++ + ++ L Sbjct: 178 RIKKL-HEKGKTIVYITHNLEE-LHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTP 235 Query: 231 PS 232 PS Sbjct: 236 PS 237 >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional. Length = 305 Score = 94.8 bits (236), Expect = 2e-20 Identities = 60/230 (26%), Positives = 111/230 (48%), Gaps = 41/230 (17%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI---FLNGQNHTRSSPSK----- 70 ++N+ E I I+G +G+GK+T + + P G+I F + +N ++ + Sbjct: 27 SVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEK 86 Query: 71 ------------------RPLSILFQ--ENNLFSHLTVWQNIA-----LGIAPNLRLDHY 105 R + ++FQ E LF T+ ++I +G++ + Sbjct: 87 LVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ-TIEKDIIFGPVSMGVSKE---EAK 142 Query: 106 QHAQVKQMLEKVFL-EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPAL 164 + A + +E V L E + R P ++SGGQ++RVALA L + L+ DEP A DP Sbjct: 143 KRA--AKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQG 200 Query: 165 RHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDP 214 EIL + + + + T+++++H+L++ ++ R I G+I+ DGD Sbjct: 201 VKEILEIFDNLNKQGK-TIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDT 249 >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 286 Score = 94.5 bits (235), Expect = 2e-20 Identities = 60/201 (29%), Positives = 105/201 (52%), Gaps = 14/201 (6%) Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK--RPL----SILFQ--ENN 81 I+G +G+GKSTL+ + PT G++ ++ T + K RP+ ++FQ E+ Sbjct: 38 IVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQ 97 Query: 82 LFSHLTVWQNIALGIAP---NLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRV 138 LF TV + I G P + LD ++ + +++ F D ++ P QMSGGQ +++ Sbjct: 98 LFED-TVEREIIFG--PKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKI 154 Query: 139 ALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIAT 198 A+ L I++LDEP A DP + +++ LLK + + T++++SH++ + + A Sbjct: 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYAD 214 Query: 199 RFIVIAGGQIVYDGDPDRLMN 219 IV+ G IV P L Sbjct: 215 EVIVMKEGSIVSQTSPKELFK 235 >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 282 Score = 94.1 bits (234), Expect = 2e-20 Identities = 60/229 (26%), Positives = 123/229 (53%), Gaps = 13/229 (5%) Query: 2 IKLDHLIYCYDNLKM----QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYP---TRG 54 ++ H+ + Y + K F + + ++G +G+GKST+ L+ G P Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65 Query: 55 SIFLNGQNHTRSS--PSKRPLSILFQE-NNLFSHLTVWQNIALGIAPNLRLDHYQHAQ-V 110 I ++G T + + + I+FQ +N F TV ++A G+ N + + + V Sbjct: 66 KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLE-NRAVPRPEMIKIV 124 Query: 111 KQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILG 170 + +L V + D+ + P+ +SGGQ+QRVA+A L + I++LDE ++ DPA + +IL Sbjct: 125 RDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK 184 Query: 171 LLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 L++++ + LT++ I+H+++++ A + +V+ G+++ G P + + Sbjct: 185 LIRKLKKKNNLTVISITHDIDEANM-ADQVLVLDDGKLLAQGSPVEIFS 232 >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional. Length = 233 Score = 94.1 bits (234), Expect = 3e-20 Identities = 64/190 (33%), Positives = 99/190 (52%), Gaps = 18/190 (9%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-HTRSSPSK-----RPL 73 F + + E + I+G SG+GKSTLL L+ G PT G + NGQ SS +K + L Sbjct: 30 FSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKL 89 Query: 74 SILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQ----MLEKVFLEDFFNRFPSQ 129 ++Q ++L T +N+A+ L + + A++ ML V LE N PS+ Sbjct: 90 GFIYQFHHLLPDFTALENVAM----PLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSE 145 Query: 130 MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189 +SGG+RQRVA+AR L+ ++L DEP D I LL ++ + L+++H+ Sbjct: 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205 Query: 190 LEDSMQIATR 199 L Q+A R Sbjct: 206 L----QLAKR 211 >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 288 Score = 94.0 bits (233), Expect = 3e-20 Identities = 70/249 (28%), Positives = 126/249 (50%), Gaps = 21/249 (8%) Query: 1 MIKLDHLIYCY-------DNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTR 53 MIK + + Y Y D +V K ++G +G+GKSTLL + G PT Sbjct: 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60 Query: 54 GSIFLNGQNHTRSS------PSKRPLSILFQ--ENNLFSHLTVWQNIALGIAPNLRLDHY 105 G + + + +S P ++ + ++FQ E+ LF TV +++A G N + Sbjct: 61 GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEE-TVLKDVAFG-PQNFGIPKE 118 Query: 106 QHAQVK-QMLEKVFL-EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPA 163 + ++ + LE V L ++F+ + P ++SGGQ +RVA+A L + +L+LDEP A DP Sbjct: 119 KAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178 Query: 164 LRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGL-I 222 R E++ L + + Q T+++++H ++D A ++ G I+ G P + + Sbjct: 179 ARIEMMQLFESIHQSGQ-TVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDF 237 Query: 223 PESTLLGIP 231 ++ LG+P Sbjct: 238 LKAHELGVP 246 >gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 93.4 bits (232), Expect = 5e-20 Identities = 59/207 (28%), Positives = 109/207 (52%), Gaps = 11/207 (5%) Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK------ 70 F++ + + ++G +G+GKSTL+ P+ G+I + G + T + +K Sbjct: 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLR 84 Query: 71 RPLSILFQ--ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFL-EDFFNRFP 127 + +S++FQ E LF + TV +++ G + + + L+KV L ED ++ P Sbjct: 85 KKVSLVFQFPEAQLFEN-TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSP 143 Query: 128 SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMIS 187 ++SGGQ +RVA+A + + IL LDEP A DP R E++ L K T+++++ Sbjct: 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGH-TVILVT 202 Query: 188 HNLEDSMQIATRFIVIAGGQIVYDGDP 214 HN++D + A +V+ G+++ P Sbjct: 203 HNMDDVAEYADDVLVLEHGKLIKHASP 229 >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 93.0 bits (231), Expect = 5e-20 Identities = 56/207 (27%), Positives = 107/207 (51%), Gaps = 11/207 (5%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN------HTRSSPSKRPL 73 VN E + +LGP+GAGK+T ++ G G+I ++ ++ H R+ +R + Sbjct: 24 LTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA---RRGI 80 Query: 74 SILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHA-QVKQMLEKVFLEDFFNRFPSQMSG 132 L QE ++F L+V+ N+ + L Q + +++E+ +E + +SG Sbjct: 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSG 140 Query: 133 GQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLED 192 G+R+RV +AR L +LLDEPFA DP +I +++ + D L +L+ HN+ + Sbjct: 141 GERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVRE 199 Query: 193 SMQIATRFIVIAGGQIVYDGDPDRLMN 219 ++ + R +++ G ++ G P ++ Sbjct: 200 TLAVCERAYIVSQGHLIAHGTPTEILQ 226 >gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional. Length = 268 Score = 93.2 bits (232), Expect = 5e-20 Identities = 64/213 (30%), Positives = 108/213 (50%), Gaps = 16/213 (7%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS-----KRPL 73 + E + +LG SG GKSTL L+ G + P++G++ G+ + + + +R + Sbjct: 32 SLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDI 91 Query: 74 SILFQENNLFSHLTVWQNIALGIAPNLR----LDHY-QHAQVKQMLEKVFLED-FFNRFP 127 ++FQ++ S + + + I LR LD + A+ +ML V L+D ++ P Sbjct: 92 QMVFQDS--ISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRP 149 Query: 128 SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMIS 187 Q+SGGQ QRV LAR L + +L+LDE + D L+ ++ LLK++ + L I+ Sbjct: 150 PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFIT 209 Query: 188 HNLEDSMQIATRFIVIAGGQIVYD---GDPDRL 217 H+L + R +V+ GQIV GD Sbjct: 210 HDLRLVERFCQRVMVMDNGQIVETQPVGDKLTF 242 >gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. Length = 247 Score = 93.1 bits (232), Expect = 5e-20 Identities = 59/209 (28%), Positives = 108/209 (51%), Gaps = 29/209 (13%) Query: 29 VILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHTRSSPS----KRPLSILF 77 ++GPSG GKSTLL L+ G + G + +GQ+ +R + ++F Sbjct: 31 ALIGPSGCGKSTLLRSLNRMNDLVPGVRI--EGKVLFDGQDIYDKKIDVVELRRRVGMVF 88 Query: 78 QENNLFSHLTVWQNIALG-----IAPNLRLDHYQHAQVKQMLEKVFL----EDFFNRFPS 128 Q+ N F ++++ NIA G I LD V++ L+K L +D + Sbjct: 89 QKPNPFP-MSIYDNIAYGPRLHGIKDKKELD----EIVEESLKKAALWDEVKDRLHDSAL 143 Query: 129 QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISH 188 +SGGQ+QR+ +AR L + +LLLDEP + DP +I L++++ + T+++++H Sbjct: 144 GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTH 201 Query: 189 NLEDSMQIATRFIVIAGGQIVYDGDPDRL 217 N++ + +I+ R G++V G +++ Sbjct: 202 NMQQAARISDRTAFFYDGELVEYGPTEQI 230 >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional. Length = 265 Score = 92.9 bits (231), Expect = 6e-20 Identities = 60/208 (28%), Positives = 107/208 (51%), Gaps = 7/208 (3%) Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ--NHTRSSPSKRPLSILFQENNLFSHLT 87 ++G +G+GKSTLL ++ + P+ G I L+ Q S R ++ L Q+ +T Sbjct: 42 LIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101 Query: 88 VWQNIALGIAPNL----RLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARC 143 V + +A+G P R +V++ + V L+ +R +SGG+RQR +A Sbjct: 102 VRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAML 161 Query: 144 LIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVI 203 + + LLLDEP + D A + ++L L+ ++ ER LT++ + H++ + + + + Sbjct: 162 VAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVAL 221 Query: 204 AGGQIVYDGDPDRLMNGLIPESTLLGIP 231 GG+++ G P LM G E + GIP Sbjct: 222 RGGEMIAQGTPAELMRGETLEQ-IYGIP 248 >gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. Length = 198 Score = 92.8 bits (231), Expect = 7e-20 Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 8/174 (4%) Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS-KRPLSI 75 F +N E + + GP+G GK+TLL ++AG P G + NG R + Sbjct: 18 GLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILY 77 Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDH-YQHAQVKQMLEKVFLEDFFNRFPSQMSGGQ 134 L L L+ +N+ H ++ L V L F + +Q+S GQ Sbjct: 78 LGHLPGLKPELSALENLHF-----WAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQ 132 Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISH 188 ++R+ALAR + + P+ +LDEP D A + GLL+ R +L+ +H Sbjct: 133 QRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHL-ARGGIVLLTTH 185 >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 91.9 bits (228), Expect = 1e-19 Identities = 65/223 (29%), Positives = 119/223 (53%), Gaps = 26/223 (11%) Query: 13 NLKMQF---------DFQVNKAERIVILGPSGAGKSTLLSLMAGF--KYP---TRGSIFL 58 +LK+ F + ++ ++GPSG+GKSTLL + YP G ++L Sbjct: 8 DLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYL 67 Query: 59 NGQNHTRSSPS--KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQ---HAQVKQM 113 +GQ+ + +R + ++FQ N +L++++N+ALG+ N RL + +V+ Sbjct: 68 DGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLN-RLVKSKKELQERVRWA 126 Query: 114 LEKVFL-EDFFNRFPS---QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEIL 169 LEK L ++ +R + ++SGGQ+QR+ +AR L Q +LL DEP A DP +I Sbjct: 127 LEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIE 186 Query: 170 GLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDG 212 L ++ ++ +T+++++H + + +I+ + GQIV G Sbjct: 187 SLFLEL--KKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227 >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. Length = 303 Score = 91.5 bits (227), Expect = 2e-19 Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 4/205 (1%) Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI-FLNGQNHTRSSPSKRPLSI 75 F + + E +LGP+GAGKST+ ++ G P RG I L +R+ ++ + + Sbjct: 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQVKQMLEKVFLEDFFNRFPSQMSGGQ 134 + Q +NL TV +N+ L + + A + +LE LE + + +SGG Sbjct: 82 VPQFDNLDPEFTVRENL-LVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGM 140 Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSM 194 ++R+ LAR LI +L+LDEP DP RH I L+ + R T+L+ +H +E++ Sbjct: 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL-ARGKTILLTTHFMEEAE 199 Query: 195 QIATRFIVIAGGQIVYDGDPDRLMN 219 ++ R V+ G+ + +G P L++ Sbjct: 200 RLCDRLCVLESGRKIAEGRPHALID 224 >gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional. Length = 306 Score = 91.4 bits (227), Expect = 2e-19 Identities = 65/206 (31%), Positives = 110/206 (53%), Gaps = 4/206 (1%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-HTRSSPSKRPLSILF 77 F V + E +LGP+GAGK+T L ++ G +P GSI L G+ +R+ +++ + ++ Sbjct: 27 SFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVP 86 Query: 78 QENNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQVKQMLEKVFLEDFFNRFPSQMSGGQRQ 136 Q +NL TV +N+ L L A V +LE LE+ + ++SGG ++ Sbjct: 87 QFDNLDPDFTVRENL-LVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKR 145 Query: 137 RVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQI 196 R+ LAR L+ +L+LDEP DP RH + L+ + R T+L+ +H +E++ ++ Sbjct: 146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL-ARGKTILLTTHFMEEAERL 204 Query: 197 ATRFIVIAGGQIVYDGDPDRLMNGLI 222 R VI G+ + +G P L+ I Sbjct: 205 CDRLCVIEEGRKIAEGAPHALIESEI 230 >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 90.3 bits (224), Expect = 4e-19 Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 17/206 (8%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLS-----LMAGFKYPTRGSIFLNGQN--HTRSSP--S 69 D ++ + ++GPSG GKSTLL L + G + L G+N P Sbjct: 24 DLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEV 83 Query: 70 KRPLSILFQENNLFSHLTVWQNIALGIAPN--LRLDHYQHAQVKQMLEKVFL----EDFF 123 +R + ++FQ N F HLT++ N+A+G+ N ++ +V+ L+K L +D Sbjct: 84 RREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRL 143 Query: 124 NRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183 N +PS +SGGQRQR+ +AR L + ILL+DEP A DP +I LL ++ E T+ Sbjct: 144 NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE--YTI 201 Query: 184 LMISHNLEDSMQIATRFIVIAGGQIV 209 ++++H+ + +++ + G+++ Sbjct: 202 VLVTHSPAQAARVSDYVAFLYLGKLI 227 >gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional. Length = 340 Score = 90.3 bits (224), Expect = 4e-19 Identities = 63/208 (30%), Positives = 104/208 (50%), Gaps = 4/208 (1%) Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI-FLNGQNHTRSSPSKRPLSI 75 F V E +LGP+GAGKST+ ++ G P G I L R+ ++ + + Sbjct: 59 GLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGV 118 Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQVKQMLEKVFLEDFFNRFPSQMSGGQ 134 + Q +NL TV +N+ L + + A + +LE LE + S +SGG Sbjct: 119 VPQFDNLDLEFTVRENL-LVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGM 177 Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSM 194 ++R+ LAR LI +L+LDEP DP RH I L+ + R T+L+ +H +E++ Sbjct: 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL-ARGKTILLTTHFMEEAE 236 Query: 195 QIATRFIVIAGGQIVYDGDPDRLMNGLI 222 ++ R V+ G+ + +G P L++ I Sbjct: 237 RLCDRLCVLEAGRKIAEGRPHALIDEHI 264 >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional. Length = 265 Score = 90.0 bits (223), Expect = 4e-19 Identities = 57/195 (29%), Positives = 99/195 (50%), Gaps = 6/195 (3%) Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN--HTRSSPSKRPLSILFQENNLFSHLT 87 I+GP+G GKSTLL ++ P G ++L+G++ H S R + +L Q +T Sbjct: 38 IIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDIT 97 Query: 88 VWQNIALGIAPN----LRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARC 143 V + +A G P+ R V + ++ + ++ +SGGQRQR +A Sbjct: 98 VQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMV 157 Query: 144 LIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVI 203 L ++ I+LLDEP D + + ++L LL ++ E+ TL + H+L + + A+ I + Sbjct: 158 LAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIAL 217 Query: 204 AGGQIVYDGDPDRLM 218 G+IV G P ++ Sbjct: 218 REGKIVAQGAPKEIV 232 >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional. Length = 228 Score = 87.9 bits (218), Expect = 2e-18 Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 10/184 (5%) Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRP------LSI 75 V + E I ++G SG+GKSTLL+++AG + G + L GQ + R + Sbjct: 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGF 92 Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQR 135 +FQ L L +N+ L K +LE++ L + P+Q+SGG++ Sbjct: 93 VFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQ 152 Query: 136 QRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQ 195 QRVALAR + +L DEP D +I LL + E TL++++H+L Q Sbjct: 153 QRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL----Q 208 Query: 196 IATR 199 +A R Sbjct: 209 LAAR 212 >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 237 Score = 88.0 bits (218), Expect = 2e-18 Identities = 60/223 (26%), Positives = 114/223 (51%), Gaps = 19/223 (8%) Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK---RPL 73 + +N+ E + ++G +GAGK+TLL + G T G I +G++ T +K + Sbjct: 23 EVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 Query: 74 SILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQ---- 129 +I+ + +FS +TV +N+A+G + Q ++ ++ V+ + F R + Sbjct: 83 AIVPEGRRVFSRMTVEENLAMG---GFFAERDQF---QERIKWVY--ELFPRLHERRIQR 134 Query: 130 ---MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMI 186 MSGG++Q +A+ R L+ Q +LLLDEP P + +I ++Q+ E+ +T+ ++ Sbjct: 135 AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL-REQGMTIFLV 193 Query: 187 SHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGLIPESTLLG 229 N ++++A R V+ G +V + D L+ S LG Sbjct: 194 EQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSAYLG 236 >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 Score = 87.5 bits (217), Expect = 3e-18 Identities = 57/183 (31%), Positives = 95/183 (51%), Gaps = 7/183 (3%) Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHLTVW 89 +LGP+GAGKSTLL ++ G PT G I +G TR K + L + L+ +LT Sbjct: 31 LLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHK--IGSLIESPPLYENLTAR 88 Query: 90 QNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKP 149 +N+ + L L +++ ++L V L + + Q S G +QR+ +A L+ Sbjct: 89 ENLKV-HTTLLGLP---DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPK 144 Query: 150 ILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIV 209 +L+LDEP DP E+ L++ E+ +T+++ SH L + Q+A +I+ G + Sbjct: 145 LLILDEPTNGLDPIGIQELRELIRSF-PEQGITVILSSHILSEVQQLADHIGIISEGVLG 203 Query: 210 YDG 212 Y G Sbjct: 204 YQG 206 >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. Length = 230 Score = 86.7 bits (215), Expect = 5e-18 Identities = 58/216 (26%), Positives = 96/216 (44%), Gaps = 21/216 (9%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYP----TRGSIFLNGQNHTRSSPSKRPLS 74 + + + E + ++G SG+GKS + G P T G I L+G+ S R ++ Sbjct: 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIA 65 Query: 75 ILFQE-----NNLFS---HLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLED---FF 123 + Q N LF+ H ++ R A + + LE V L D Sbjct: 66 TIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQAR------ALILEALEAVGLPDPEEVL 119 Query: 124 NRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183 ++P Q+SGG QRV +A L+ + P L+ DEP D + +L LL+++ + Sbjct: 120 KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGI 179 Query: 184 LMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 L+I+H+L +IA V+ G+IV G + Sbjct: 180 LLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215 >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional. Length = 588 Score = 86.2 bits (214), Expect = 6e-18 Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 28/233 (12%) Query: 2 IKLDHLIYCYDNLKMQFD---FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFL 58 ++ D + + YDN + + F+ + + I+GP+GAGKSTL++L+ P G I + Sbjct: 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILI 394 Query: 59 NGQN---HTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLE 115 +G + TR+S +R ++++FQ+ LF+ ++ NI +G R D +++ E Sbjct: 395 DGTDIRTVTRAS-LRRNIAVVFQDAGLFNR-SIEDNIRVG-----RPDA-TDEEMRAAAE 446 Query: 116 KVFLEDFFNRFP-----------SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPAL 164 + DF R P Q+SGG+RQR+A+AR L++ PIL+LDE + D Sbjct: 447 RAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVET 506 Query: 165 RHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217 ++ L ++ R T +I+H L +++ A R +V G++V G D L Sbjct: 507 EAKVKAALDELMKGR--TTFIIAHRLS-TVRNADRILVFDNGRVVESGSFDEL 556 >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional. Length = 257 Score = 85.9 bits (212), Expect = 8e-18 Identities = 57/201 (28%), Positives = 107/201 (53%), Gaps = 15/201 (7%) Query: 30 ILGPSGAGKSTLLSLMAGF------KYPTRGSIFLNGQNHTRSSPSK--RPLSILFQENN 81 I+GPSG+GKSTLL ++ K G + G++ + K + + ++FQ+ N Sbjct: 41 IMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100 Query: 82 LFSHLTVWQNIALGIAPNLRLDHYQHAQ-VKQMLEKVFL----EDFFNRFPSQMSGGQRQ 136 F HL+++ NIA + + + + + V++ L KV L D N SQ+SGGQ+Q Sbjct: 101 PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQ 160 Query: 137 RVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQI 196 R+ +AR L + +LL+DEP ++ D I L+ ++ + ++ ++++SHN + ++ Sbjct: 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL--KNEIAIVIVSHNPQQVARV 218 Query: 197 ATRFIVIAGGQIVYDGDPDRL 217 A + G++V G + + Sbjct: 219 ADYVAFLYNGELVEWGSSNEI 239 >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272 Score = 85.8 bits (212), Expect = 9e-18 Identities = 58/192 (30%), Positives = 103/192 (53%), Gaps = 7/192 (3%) Query: 31 LGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-HTRSSPSKRPLSILFQENNLFSHLTVW 89 LG +GAGK+T LS++ G PT G++ + G++ T ++ L + Q N LF HLTV Sbjct: 962 LGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVA 1021 Query: 90 QNIALGIAPNLRLDHYQHAQVKQ--MLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQ 147 ++I L+ ++ AQ++ MLE L N +SGG ++++++A + Sbjct: 1022 EHILF--YAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGD 1079 Query: 148 KPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQ 207 +++LDEP + DP R I LL + R T++M +H+++++ + R +I+ G+ Sbjct: 1080 AKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGR--TIIMSTHHMDEADLLGDRIAIISQGR 1137 Query: 208 IVYDGDPDRLMN 219 + G P L N Sbjct: 1138 LYCSGTPLFLKN 1149 Score = 48.5 bits (115), Expect = 1e-06 Identities = 45/190 (23%), Positives = 90/190 (47%), Gaps = 10/190 (5%) Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN-HTRSSPSKRPLSILFQEN 80 V E +LG +GAGK+T ++ G T G + G++ T S + + Q + Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFD 2021 Query: 81 NLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQM----LEKVFLEDFFNRFPSQMSGGQRQ 136 + LT +++ L RL +++++ ++ + L + +R SGG ++ Sbjct: 2022 AIDDLLTGREHLYL----YARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKR 2077 Query: 137 RVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQI 196 +++ A LI P++LLDEP DP R + + + E + +++ SH++E+ + Sbjct: 2078 KLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGR-AVVLTSHSMEECEAL 2136 Query: 197 ATRFIVIAGG 206 TR ++ G Sbjct: 2137 CTRLAIMVKG 2146 >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional. Length = 331 Score = 85.1 bits (211), Expect = 1e-17 Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 14/211 (6%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKR-----PL 73 ++ + E + ++G SG GKST + G T G + G++ + + Sbjct: 41 TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDI 100 Query: 74 SILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHA------QVKQMLEKV-FLEDFFNRF 126 ++FQ+ + L I IA LR H + + +VK M+ KV L + NR+ Sbjct: 101 QMIFQDP--LASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRY 158 Query: 127 PSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMI 186 P + SGGQ QR+ +AR LI + +++ DEP + D +++ +++ LL+Q+ E L+L+ I Sbjct: 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFI 218 Query: 187 SHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217 +H+L I+ R +V+ G V G D + Sbjct: 219 AHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249 >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 289 Score = 83.5 bits (206), Expect = 4e-17 Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 22/232 (9%) Query: 2 IKLDHLIYCYDNLKMQFDFQ--------VNKAERIVILGPSGAGKSTLLSLMAGFKYPTR 53 I LD++ Y Y K F+F+ K + ++G +G+GKST++ L G Sbjct: 7 IILDNVSYTYAK-KTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET 65 Query: 54 G-------SIFLNGQNHTRSSPSKRPLSILFQ--ENNLFSHLTVWQNIALGIAPNLRLDH 104 G +I N + ++ + ++FQ E LF T+ ++IA G NL + Sbjct: 66 GQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQE-TIEKDIAFG-PVNLGENK 123 Query: 105 YQ-HAQVKQMLEKVFL-EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDP 162 + + +V ++L+ V L ED+ R P ++SGGQ++RVALA + L+LDEP DP Sbjct: 124 QEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 183 Query: 163 ALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDP 214 + + L +++ E + ++M++HN++ ++IA IV+ G+++ G P Sbjct: 184 KGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235 >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. Length = 585 Score = 83.4 bits (206), Expect = 4e-17 Identities = 56/210 (26%), Positives = 109/210 (51%), Gaps = 17/210 (8%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN---HTRSSPSKRPLSIL 76 F+ + + I+GP+GAGK+TL++L+ PT G I ++G + TR S ++ ++ + Sbjct: 356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRES-LRKSIATV 414 Query: 77 FQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP-------SQ 129 FQ+ LF+ ++ +NI LG + Y+ A+ + F+ N + ++ Sbjct: 415 FQDAGLFNR-SIRENIRLGREGATDEEVYEAAKAAAAHD--FILKRSNGYDTLVGERGNR 471 Query: 130 MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189 +SGG+RQR+A+AR +++ PIL+LDE + D + + + R T +I+H Sbjct: 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNR--TTFIIAHR 529 Query: 190 LEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 L +++ A + + G+++ G L+ Sbjct: 530 LS-TVRNADLVLFLDQGRLIEKGSFQELIQ 558 >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional. Length = 506 Score = 83.4 bits (207), Expect = 4e-17 Identities = 58/202 (28%), Positives = 100/202 (49%), Gaps = 19/202 (9%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPT---RGSIFLNGQ----NHTRSSPSKR 71 +V E + + G +GAGKSTL+ +++G YP G I G+ ++ R + Sbjct: 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGV-YPHGTYEGEIIFEGEELQASNIRDTERA- 82 Query: 72 PLSILFQENNLFSHLTVWQNIALG--IAPNLRLDHYQ-HAQVKQMLEKVFLEDFFNRFPS 128 ++I+ QE L L+V +NI LG I P +D+ + + +++L ++ L+ Sbjct: 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG 142 Query: 129 QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPAL-RHEILGLLKQVCDERQ--LTLLM 185 + GQ+Q V +A+ L +Q +L+LDEP A +L E LL + D + + + Sbjct: 143 NLGLGQQQLVEIAKALNKQARLLILDEPTA----SLTESETAVLLDIIRDLKAHGIACIY 198 Query: 186 ISHNLEDSMQIATRFIVIAGGQ 207 ISH L + I+ VI G+ Sbjct: 199 ISHKLNEVKAISDTICVIRDGR 220 Score = 56.1 bits (136), Expect = 8e-09 Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 42/216 (19%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTR--GSIFLNGQNHTRSSPS-------- 69 F + + E + I G GAG++ L+ + G YP R G IF++G+ +P Sbjct: 283 FSLRRGEILGIAGLVGAGRTELVQCLFG-AYPGRWEGEIFIDGKPVKIRNPQQAIAQGIA 341 Query: 70 ------KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQV-KQMLEKVFLEDF 122 KR + + + V +NI L LD + E + + Sbjct: 342 MVPEDRKR--------DGIVPVMGVGKNITLAA-----LDRFTGGSRIDDAAELKTILES 388 Query: 123 FNRF----PS------QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLL 172 R S ++SGG +Q+ LA+CL+ IL+LDEP D ++EI L+ Sbjct: 389 IQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLI 448 Query: 173 KQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQI 208 Q+ ++ + +++IS L + + ++ R +V+ G++ Sbjct: 449 NQLV-QQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483 >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional. Length = 276 Score = 83.2 bits (205), Expect = 5e-17 Identities = 58/205 (28%), Positives = 110/205 (53%), Gaps = 20/205 (9%) Query: 30 ILGPSGAGKSTLLSLM-------AGFKYPTRGSIFLNGQ---NHTRSSPSKRPLSILFQE 79 ++GP+G+GK+T L + +G++Y G + L G+ N+ +R + +LFQ Sbjct: 52 LMGPTGSGKTTFLRTLNRMNDKVSGYRY--SGDVLLGGRSIFNYRDVLEFRRRVGMLFQR 109 Query: 80 NNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQM-LEKVFL----EDFFNRFPSQMSGGQ 134 N F +++ N+ G+ + + + V Q L +V L +D + P ++SGGQ Sbjct: 110 PNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQ 168 Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSM 194 +Q + LAR L +LLLDEP + DP +I ++ + D +LT+++++HNL + Sbjct: 169 QQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAA 226 Query: 195 QIATRFIVIAGGQIVYDGDPDRLMN 219 +I+ R + G++V +G ++L + Sbjct: 227 RISDRAALFFDGRLVEEGPTEQLFS 251 >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional. Length = 510 Score = 83.2 bits (206), Expect = 6e-17 Identities = 61/207 (29%), Positives = 97/207 (46%), Gaps = 18/207 (8%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK-RPLSILF 77 DF ++ E +LG +GAGKSTL+ ++AG P G++ + G R +P+K L I Sbjct: 31 DFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYL 90 Query: 78 --QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGG-- 133 QE LF +L+V +NI G+ + + ++ L+ S G Sbjct: 91 VPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD---------SSAGSL 141 Query: 134 ---QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNL 190 RQ V + R L+R IL+LDEP A PA + ++++ + + ++ ISH L Sbjct: 142 EVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKL 200 Query: 191 EDSMQIATRFIVIAGGQIVYDGDPDRL 217 + Q+A R V+ G I G L Sbjct: 201 PEIRQLADRISVMRDGTIALSGKTADL 227 Score = 61.6 bits (150), Expect = 1e-10 Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 39/213 (18%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSS------------ 67 +V E + + G GAG++ L + G + G I LNG+ S Sbjct: 284 LEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYL 343 Query: 68 PSKRPLSILFQENNL--------FSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFL 119 P R S L+ + L + W A N L+ Y+ A L Sbjct: 344 PEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPA---RENAVLERYRRA----------L 390 Query: 120 EDFFNRFPSQ----MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQV 175 FN Q +SGG +Q+V +A+CL +L++DEP D + R++I L++ + Sbjct: 391 NIKFNH-AEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSI 449 Query: 176 CDERQLTLLMISHNLEDSMQIATRFIVIAGGQI 208 + + +L IS +LE+ Q+A R +V+ G+I Sbjct: 450 A-AQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481 >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional. Length = 510 Score = 82.1 bits (203), Expect = 1e-16 Identities = 50/205 (24%), Positives = 100/205 (48%), Gaps = 11/205 (5%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSP---SKRPLSI 75 + V E +LG +GAGKSTL+ +++G PT+G+I +N N+ + ++ + I Sbjct: 25 NLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGI 84 Query: 76 LFQENNLFSHLTVWQNIALGIAPNLR------LDHYQHAQVKQ-MLEKVFLEDFFNRFPS 128 ++QE ++ LTV +N+ +G + +D + ML +V L+ + + Sbjct: 85 IYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA 144 Query: 129 QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISH 188 +S +Q + +A+ L+ ++++DEP + + ++ Q+ E ++ ISH Sbjct: 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGT-AIVYISH 203 Query: 189 NLEDSMQIATRFIVIAGGQIVYDGD 213 L + +I R+ V+ G V G Sbjct: 204 KLAEIRRICDRYTVMKDGSSVCSGM 228 Score = 68.3 bits (167), Expect = 2e-12 Identities = 51/217 (23%), Positives = 108/217 (49%), Gaps = 22/217 (10%) Query: 11 YDNLKMQ-FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSP- 68 D K++ F V + E + G G+G++ L++ + G G I LNG++ + SP Sbjct: 274 RDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPL 333 Query: 69 --SKRPLSILFQ---ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQ--VKQMLEKVFLED 121 K+ ++ + + +N F + ++ QN+A I+ +L+ Y+ A ++ E+ E+ Sbjct: 334 DAVKKGMAYITESRRDNGFFPNFSIAQNMA--ISRSLKDGGYKGAMGLFHEVDEQRTAEN 391 Query: 122 ----------FFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGL 171 N+ +++SGG +Q+V +++ L +++ DEP D + EI + Sbjct: 392 QRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKV 451 Query: 172 LKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQI 208 ++Q+ D+ + +LM+S L + + + R V G++ Sbjct: 452 MRQLADDGK-VILMVSSELPEIITVCDRIAVFCEGRL 487 >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional. Length = 582 Score = 82.4 bits (204), Expect = 1e-16 Identities = 64/229 (27%), Positives = 117/229 (51%), Gaps = 28/229 (12%) Query: 2 IKLDHLIYCY---DNLKMQ-FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIF 57 I+ ++ + Y + ++ +F++ + + ++G SG+GKST+ +L+ F G I Sbjct: 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401 Query: 58 LNGQN---HTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQML 114 L+G + +T +S + ++++ Q +LF+ T+ NIA R + Y Q+++ Sbjct: 402 LDGHDLRDYTLAS-LRNQVALVSQNVHLFND-TIANNIAYA-----RTEQYSREQIEEAA 454 Query: 115 EKVFLEDFFNRFPS-----------QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPA 163 + DF N+ + +SGGQRQR+A+AR L+R PIL+LDE + D Sbjct: 455 RMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514 Query: 164 LRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDG 212 I L ++ R T L+I+H L +++ A +V+ G+IV G Sbjct: 515 SERAIQAALDELQKNR--TSLVIAHRLS-TIEKADEILVVEDGEIVERG 560 >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 81.9 bits (202), Expect = 1e-16 Identities = 56/210 (26%), Positives = 111/210 (52%), Gaps = 21/210 (10%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSL-------MAGFKYPTRGSIFLNGQNHTRS----SP 68 ++ K + I+GPSG GK+TLL + GF+ G I+ GQ+ + Sbjct: 24 MKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR--VEGKIYFKGQDIYDPQLDVTE 81 Query: 69 SKRPLSILFQENNLFSHLTVWQNIALGIAPN-LRLDHYQHAQVKQMLEKVFLEDF----F 123 ++ + ++FQ+ F ++++ N+A G + ++ H V++ L+K L D Sbjct: 82 YRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSEL 140 Query: 124 NRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183 N+ +++SGGQ+QR+ +AR L + ++LLDEP + DP I LL+++ + T+ Sbjct: 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTI 198 Query: 184 LMISHNLEDSMQIATRFIVIAGGQIVYDGD 213 ++++HN+ +++IA + G+++ G Sbjct: 199 VIVTHNIGQAIRIADYIAFMYRGELIEYGP 228 >gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. Length = 710 Score = 81.1 bits (201), Expect = 2e-16 Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 33/219 (15%) Query: 18 FDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKR----PL 73 F + +R+ ++G SG+GKST+ L+AG P G I +G R + + Sbjct: 498 FSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGI--PREEIPREVLANSV 555 Query: 74 SILFQENNLFSHLTVWQNIAL--GIAPNLRL-----DHYQHAQVKQM---LEKVFLEDFF 123 +++ Q+ LF TV N+ L P+ L D H + + E Sbjct: 556 AMVDQDIFLFEG-TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGA 614 Query: 124 NRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183 N +SGGQRQR+ +AR L+R IL+LDE + DP I L++ R T Sbjct: 615 N-----LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTC 665 Query: 184 LMISHNL---EDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 ++++H L D +I IV+ G++V G + L Sbjct: 666 IIVAHRLSTIRDCDEI----IVLERGKVVQRGTHEELWA 700 >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional. Length = 204 Score = 81.0 bits (201), Expect = 2e-16 Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 20/152 (13%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQ 78 F +N E + I GP+GAGK++LL ++AG P G + G+ R + Sbjct: 21 SFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDE-------YH 73 Query: 79 ENNLF--------SHLTVWQNIALGIAPNLRLDHYQH-AQVKQMLEKVFLEDFFNRFPSQ 129 ++ L+ + LT +N+ RL + + L +V L F + Q Sbjct: 74 QDLLYLGHQPGIKTELTALENLRF----YQRLHGPGDDEALWEALAQVGLAGFEDVPVRQ 129 Query: 130 MSGGQRQRVALARCLIRQKPILLLDEPFAVFD 161 +S GQ++RVALAR + + P+ +LDEPF D Sbjct: 130 LSAGQQRRVALARLWLTRAPLWILDEPFTAID 161 >gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional. Length = 207 Score = 80.7 bits (200), Expect = 3e-16 Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 29/157 (18%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--------- 69 F + E +V+ GP+G+GK+TLL L+AG P G+I L+G + + Sbjct: 22 SFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 Query: 70 ---KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRF 126 K L++ EN L W LG L + LE V L + Sbjct: 82 NAMKPALTV--AEN-----LEFWAAF-LG-GEELDIAA--------ALEAVGLAPLAHLP 124 Query: 127 PSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPA 163 +S GQ++RVALAR L+ +PI +LDEP A D A Sbjct: 125 FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA 161 >gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544 Score = 80.5 bits (199), Expect = 4e-16 Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 35/189 (18%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSI--LF 77 F++ E + I+GPSG+GKSTL L+ G PT GS+ L+G + + I L Sbjct: 339 FRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLP 398 Query: 78 QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFL---EDFFNRFP------- 127 Q+ LF TV +NIA R ++A ++++E L + R P Sbjct: 399 QDVELFPG-TVAENIA-------RFG--ENADPEKIIEAAKLAGVHELILRLPDGYDTVI 448 Query: 128 ----SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDP----ALRHEILGLLKQVCDER 179 + +SGGQRQR+ALAR L +++LDEP + D AL + I L R Sbjct: 449 GPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-----R 503 Query: 180 QLTLLMISH 188 +T+++I+H Sbjct: 504 GITVVVITH 512 >gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein. Length = 617 Score = 79.7 bits (197), Expect = 6e-16 Identities = 57/208 (27%), Positives = 106/208 (50%), Gaps = 21/208 (10%) Query: 26 ERIVILGPSGAGKSTLLSLMAGFKYPT----RGSIFLNGQNHTRSSPSKRPLSILFQENN 81 E + ++G SGAGK+TL++ +A F+ P GS+ LNG + R +S Q+++ Sbjct: 52 ELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNG--MPIDAKEMRAISAYVQQDD 108 Query: 82 LF-SHLTVWQNIALGIAPNLRLDHY-----QHAQVKQMLEKVFLEDFFNRF---PSQM-- 130 LF LTV + L +LR+ + +V ++L+ + L N P ++ Sbjct: 109 LFIPTLTVRE--HLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKG 166 Query: 131 -SGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189 SGG+R+R+A A L+ P+L DEP + D + + ++ +LK + + + + I Sbjct: 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQP 226 Query: 190 LEDSMQIATRFIVIAGGQIVYDGDPDRL 217 + ++ + I++A G++ Y G PD+ Sbjct: 227 SSELFELFDKIILMAEGRVAYLGSPDQA 254 >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. Length = 555 Score = 79.2 bits (195), Expect = 8e-16 Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 15/199 (7%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLSIL 76 D ++ + + + I+G +G GKSTL L G P G I L+G + S + S + Sbjct: 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAI 421 Query: 77 FQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQ 136 F + +LF L G +L + Q+ Q ++ +KV +ED + +S GQ++ Sbjct: 422 FADFHLFDDLI---GPDEGEHASLD-NAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 Query: 137 RVALARCLIRQKPILLLDEPFAVFDPALRH----EILGLLKQVCDERQLTLLMISHNLED 192 R+AL + +PILL DE A DPA + E+L LK+ + T+++ISH+ + Sbjct: 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR----QGKTIIIISHD-DQ 532 Query: 193 SMQIATRFIVIAGGQIVYD 211 ++A + I +A G IV D Sbjct: 533 YFELADQIIKLAAGCIVKD 551 >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional. Length = 264 Score = 79.1 bits (195), Expect = 1e-15 Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 33/188 (17%) Query: 31 LGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQN----HTRSSPSKRPLSILFQE 79 +GPSG GKST+L L+ GF+ G + +G+N +R + ++FQ+ Sbjct: 42 IGPSGCGKSTILRCFNRLNDLIPGFR--VEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQK 99 Query: 80 NNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVF--------LEDFFNRFPSQMS 131 N F +++ NIA G R++ Y+ + +++E+ ++D + +S Sbjct: 100 PNPFPK-SIYDNIAYGA----RINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLS 153 Query: 132 GGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLE 191 GGQ+QR+ +AR + Q ++L+DEP + DP I L+ ++ + Q T+++++HN Sbjct: 154 GGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL--KEQYTIIIVTHN-- 209 Query: 192 DSMQIATR 199 MQ A R Sbjct: 210 --MQQAAR 215 >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 78.1 bits (192), Expect = 2e-15 Identities = 58/244 (23%), Positives = 123/244 (50%), Gaps = 21/244 (8%) Query: 1 MIKLD--HLIYCYDNLKMQFDFQVNKAERIVI--LGPSGAGKSTLLSL---MAGFKYPTR 53 +K+D + + Y + + E+ V+ +GPSG GKST L L M TR Sbjct: 1 TVKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60 Query: 54 --GSIFLNGQN----HTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPN-LRLDHYQ 106 G I ++G+N + ++ + ++FQ N F ++++N+A G+ N ++ + + Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFI 119 Query: 107 HAQVKQMLEKVFL----EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDP 162 +V++ L+ L +D +SGGQ+QR+ +AR + +LL+DEP + DP Sbjct: 120 RQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDP 179 Query: 163 ALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGLI 222 ++ L+ ++ ++ T+++++HN++ + +++ + G++V D ++ Sbjct: 180 ISTAKVEELIHEL--KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPE 237 Query: 223 PEST 226 E+T Sbjct: 238 KEAT 241 >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 78.1 bits (192), Expect = 2e-15 Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 17/218 (7%) Query: 6 HLIYCYDNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFK-----YPTRGSIFLNG 60 HL Y D N+ E ++GPSG GKST L + G++ L G Sbjct: 12 HLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 Query: 61 QN----HTRSSPSKRPLSILFQENNLFSHLTVWQNIALG-----IAPNLRLDHYQHAQVK 111 QN + ++ + ++FQ+ N F ++++N+ G + LD +K Sbjct: 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLK 130 Query: 112 QMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGL 171 Q ++D + +SGGQ+QRV +AR L + ++LLDEP + DP +I + Sbjct: 131 QAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENM 190 Query: 172 LKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIV 209 L ++ D Q T+++++H++ + +I+ + G ++ Sbjct: 191 LLELRD--QYTIILVTHSMHQASRISDKTAFFLTGNLI 226 >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 78.2 bits (192), Expect = 2e-15 Identities = 57/212 (26%), Positives = 109/212 (51%), Gaps = 17/212 (8%) Query: 2 IKLDHLIYCYDNLKM--QFDFQVNKAERIVILGPSGAGKSTL---LSLMAGFKYPTR--G 54 IK+++L + YD K+ ++ +++ I+GPSG GKST L+ M + R G Sbjct: 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEG 67 Query: 55 SIFLNGQN----HTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIA-----PNLRLDHY 105 + QN + +R +S++ + NLF ++V+ N+A G+ P L +D Sbjct: 68 RVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDI 126 Query: 106 QHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALR 165 + +K ++ ++ +SGGQ+QR+ +AR L + +LL+DEP DP Sbjct: 127 VESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIAS 186 Query: 166 HEILGLLKQVCDERQLTLLMISHNLEDSMQIA 197 ++ L++ + +LT++++SHNL +++ Sbjct: 187 MKVESLIQSLRLRSELTMVIVSHNLHQVSRLS 218 >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional. Length = 623 Score = 78.0 bits (192), Expect = 2e-15 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 30/223 (13%) Query: 17 QFDFQVNKAERIVILGPSGAGKS-TLLSLM-----AG---------FKYPTRGSIFLNGQ 61 F + + E + I+G SG+GKS T L+LM AG + +R I L+ Q Sbjct: 34 NLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQ 93 Query: 62 N-----HTRSSPSKRPLSILFQE--NNLFSHLTVWQNIALGIAPNLRLDHYQH-AQVKQM 113 + H R + ++++FQE +L TV + IA I + + + K+M Sbjct: 94 SAAQMRHVRGAD----MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRM 149 Query: 114 LEKVFL---EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILG 170 L++V + + +R+P Q+SGG RQRV +A L + +L+ DEP D ++ +IL Sbjct: 150 LDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ 209 Query: 171 LLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGD 213 L+K + E + ++ I+H++ +IA R +V+ G+ V G Sbjct: 210 LIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGS 252 Score = 74.9 bits (184), Expect = 2e-14 Identities = 64/205 (31%), Positives = 101/205 (49%), Gaps = 21/205 (10%) Query: 20 FQVNKAERIVILGPSGAGKST----LLSLMAGFKYPTRGSIFLNGQNHTRSSPSK----- 70 F + E + ++G SG+GKST LL L+ G I NGQ SP K Sbjct: 345 FDLWPGETLSLVGESGSGKSTTGRALLRLVES----QGGEIIFNGQRIDTLSPGKLQALR 400 Query: 71 RPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQH-----AQVKQMLEKVFLE-DFFN 124 R + +FQ+ ++ L Q + I LR+ A+V +LE+V L + Sbjct: 401 RDIQFIFQDP--YASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW 458 Query: 125 RFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLL 184 R+P + SGGQRQR+ +AR L +++ DE + D ++R +I+ LL + + + L Sbjct: 459 RYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYL 518 Query: 185 MISHNLEDSMQIATRFIVIAGGQIV 209 ISH++ +I+ R V+ GQIV Sbjct: 519 FISHDMAVVERISHRVAVMYLGQIV 543 >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional. Length = 225 Score = 77.1 bits (190), Expect = 3e-15 Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 8/174 (4%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLSILF 77 F + E +I GPSG GKSTLL ++A PT G++ G++ + P ++ +S Sbjct: 28 FSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCA 87 Query: 78 QENNLFSHLTVWQNIALGIAP-NLRLDHYQHAQVKQMLEKVFL-EDFFNRFPSQMSGGQR 135 Q LF TV+ N+ I P +R A LE+ L + + +++SGG++ Sbjct: 88 QTPTLFGD-TVYDNL---IFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEK 143 Query: 136 QRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189 QR++L R L +LLLDE + D + +H + ++ + E+ + +L ++H+ Sbjct: 144 QRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197 >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional. Length = 267 Score = 76.8 bits (189), Expect = 4e-15 Identities = 51/199 (25%), Positives = 106/199 (53%), Gaps = 6/199 (3%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSI--LF 77 F + + + + I+G +G+GKSTL ++AG PT G + ++ S R I +F Sbjct: 34 FTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIF 93 Query: 78 QE--NNLFSHLTVWQNIALGIAPNLRLDHYQHA-QVKQMLEKV-FLEDFFNRFPSQMSGG 133 Q+ +L + Q + + N L+ Q Q+ + L +V L D + +P ++ G Sbjct: 94 QDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPG 153 Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDS 193 Q+QR+ LAR LI + +++ DE A D ++R +++ L+ ++ +++ ++ + ++ +L Sbjct: 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMM 213 Query: 194 MQIATRFIVIAGGQIVYDG 212 I+ + +V+ G++V G Sbjct: 214 KHISDQVLVMHQGEVVERG 232 >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional. Length = 214 Score = 76.4 bits (188), Expect = 6e-15 Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 12/148 (8%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQ 78 DF V+ E +++ G +GAGK+TLL ++AG + G I ++G+ TR S R ++ L Sbjct: 31 DFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRS-RFMAYLGH 89 Query: 79 ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQM----LEKVFLEDFFNRFPSQMSGGQ 134 L + L+ +N+ L H + A+ QM L V L + + Q+S GQ Sbjct: 90 LPGLKADLSTLENLHF-----LCGLHGRRAK--QMPGSALAIVGLAGYEDTLVRQLSAGQ 142 Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDP 162 ++R+ALAR + P+ LLDEP+A D Sbjct: 143 KKRLALARLWLSPAPLWLLDEPYANLDL 170 >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 76.2 bits (187), Expect = 7e-15 Identities = 59/214 (27%), Positives = 106/214 (49%), Gaps = 23/214 (10%) Query: 2 IKLDHLIYCYDNLKM--QFDFQVNKAERIVILGPSGAGKSTLLSLM---AGFKYPTR--G 54 IK+ L + Y+ K + + + I+GPSG GKST + + + + P + G Sbjct: 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEG 67 Query: 55 SIFLNGQNHTRSSPS----KRPLSILFQENNLFSHLTVWQNIALGIA-----PNLRLDHY 105 + GQN + +R + ++FQ N F +++++N+A G+ P LD Sbjct: 68 VVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEI 126 Query: 106 QHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALR 165 + +K ++D N+ +SGGQ+QR+ +AR L + +LL+DEP + DP Sbjct: 127 VESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIAT 186 Query: 166 HEILGLLKQVCDERQLTLLMISHNLEDSMQIATR 199 ++ L+ + +LT+ +++HN MQ ATR Sbjct: 187 MKVEELIHSL--RSELTIAIVTHN----MQQATR 214 >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 569 Score = 76.3 bits (188), Expect = 7e-15 Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 23/216 (10%) Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHT--RSSPSKRPLS 74 +F + + + I GP+G+GKSTLLSL+ + G I + T + + L+ Sbjct: 333 NVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA 392 Query: 75 ILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPS------ 128 ++ Q LFS TV NIALG R D Q +++ + + D R P Sbjct: 393 VVSQTPFLFSD-TVANNIALG-----RPDATQ-QEIEHVARLASVHDDILRLPQGYDTEV 445 Query: 129 -----QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183 +SGGQ+QR+++AR L+ IL+LD+ + D H+IL L+Q + R T+ Sbjct: 446 GERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGR--TV 503 Query: 184 LMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 ++ +H L ++ A+ +V+ G I G+ D+L Sbjct: 504 IISAHRLS-ALTEASEILVMQHGHIAQRGNHDQLAQ 538 >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 76.0 bits (187), Expect = 8e-15 Identities = 57/201 (28%), Positives = 97/201 (48%), Gaps = 33/201 (16%) Query: 19 DFQVNKAERIVILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHTRSSPS-- 69 + K ++GPSG GKSTLL L+ G + G I NG+N S Sbjct: 26 TISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR--ITGDILYNGENIMDSGADVV 83 Query: 70 --KRPLSILFQENNLFSHLTVWQNIALG-----IAPNLRLDHYQHAQVKQMLEKVFL--- 119 +R + ++FQ N F ++++N+A G LD V++ L+ L Sbjct: 84 ALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLD----TIVEKSLKGAALWDE 138 Query: 120 -EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDE 178 +D + +SGGQ+QR+ +AR L ++L+DEP + DP +I L++ + + Sbjct: 139 VKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL--K 196 Query: 179 RQLTLLMISHNLEDSMQIATR 199 ++ T+++++HN MQ A R Sbjct: 197 KEYTVIIVTHN----MQQAAR 213 >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 75.4 bits (185), Expect = 1e-14 Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 32/219 (14%) Query: 30 ILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQN--HTRSSP--SKRPLSILFQ 78 ++GPSG GK+T L L G + G I L+GQ+ R P +R + ++FQ Sbjct: 35 LIGPSGCGKTTFLRAINRMHDLTPGAR--VTGRILLDGQDIYGPRVDPVAMRRRVGMVFQ 92 Query: 79 ENNLFSHLTVWQNIALGIAPNLRL------DHYQHAQVKQMLEKVFLEDFFNRFPSQ--- 129 + N F ++V+ N+ G L+L DH + + ++ +R + Sbjct: 93 KPNPFPTMSVFDNVVAG----LKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATG 148 Query: 130 MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189 +SGGQ+QR+ +AR L + ILL+DEP + DPA I L+ + ++ T+++++HN Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL--KKVTTIIIVTHN 206 Query: 190 LEDSMQIA--TRFIVIAGGQIVYDGDPDRLMNGLIPEST 226 + + +++ T F ++ G +V G D+L E T Sbjct: 207 MHQAARVSDTTSFFLV--GDLVEHGPTDQLFTNPRDERT 243 >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 75.4 bits (185), Expect = 1e-14 Identities = 53/202 (26%), Positives = 110/202 (54%), Gaps = 16/202 (7%) Query: 30 ILGPSGAGKSTLLSLMAGFK--YPT---RGSIFLNGQN--HTRSSPS--KRPLSILFQEN 80 I+GPSG GKST+L + P+ G I L+ + P +R + ++FQ+ Sbjct: 35 IIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKP 94 Query: 81 NLFSHLTVWQNIALGIAPNLRLDHYQHAQ-VKQMLEKVFLED-FFNRFPS---QMSGGQR 135 N F ++++ N+ G N R++ + + V+ L++V L D +R S ++SGGQ+ Sbjct: 95 NPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQ 154 Query: 136 QRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQ 195 QR+ +AR + + ++L+DEP + DP +I L++++ + + T+++++HN++ + + Sbjct: 155 QRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL--KEKYTIIIVTHNMQQAAR 212 Query: 196 IATRFIVIAGGQIVYDGDPDRL 217 ++ G +V G+ ++ Sbjct: 213 VSDYTAFFYMGDLVECGETKKI 234 >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional. Length = 254 Score = 75.5 bits (185), Expect = 1e-14 Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 31/239 (12%) Query: 1 MIKLDHLIYCYDNLKM--QFDFQVNKAERIVILGPSGAGKSTLL-------SLMAGFKYP 51 +I+ ++L Y + K + ++ K ++GPSG GKST L L+ G K Sbjct: 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK-- 64 Query: 52 TRGSIFLNGQNHTRSS----PSKRPLSILFQENNLFSHLTVWQNIALG-----IAPNLRL 102 G++ G+N ++ +R + ++FQ N F ++++ NI+ G +L Sbjct: 65 IEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKL 123 Query: 103 DHYQHAQVKQMLEKVFL----EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFA 158 D V+Q L+K L +D N +SGGQ+QR+ +AR L + ++L+DEP + Sbjct: 124 DEI----VEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTS 179 Query: 159 VFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217 DP +I L+ + + T+++++HN++ + +I+ R G I + D L Sbjct: 180 ALDPISTGKIEELIINL--KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 75.4 bits (185), Expect = 1e-14 Identities = 54/185 (29%), Positives = 100/185 (54%), Gaps = 27/185 (14%) Query: 31 LGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHTRSSPS----KRPLSILFQE 79 +GPSG GKST+L L+ GF++ G + GQ+ +R + ++FQ+ Sbjct: 40 IGPSGCGKSTVLRSLNRMNDLVKGFRF--EGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQ 97 Query: 80 NNLFSHLTVWQNIALGIAPNLRLDHYQ---HAQVKQMLEKVFL----EDFFNRFPSQMSG 132 N FS ++++ N+A G LRL+ Y+ +VK L+ L +D +SG Sbjct: 98 PNPFS-MSIFDNVAFG----LRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSG 152 Query: 133 GQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLED 192 GQ+QR+ +AR + + +LLLDEP + DP + L+ ++ ++ T+ +++HN++ Sbjct: 153 GQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL--KKDYTIALVTHNMQQ 210 Query: 193 SMQIA 197 ++++A Sbjct: 211 AIRVA 215 >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional. Length = 249 Score = 75.3 bits (185), Expect = 1e-14 Identities = 51/205 (24%), Positives = 108/205 (52%), Gaps = 20/205 (9%) Query: 30 ILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHTRSSPSKR---PLSILFQE 79 ++GPSG GKSTLL L+ G K G + ++G++ + + ++FQ+ Sbjct: 34 LIGPSGCGKSTLLRCLNRMNDLIEGVK--ITGKLTMDGEDIYGNIDVADLRIKVGMVFQK 91 Query: 80 NNLFSHLTVWQNIALGI-APNLRLDHYQHAQVKQMLEKVFL----EDFFNRFPSQMSGGQ 134 N F +++++N+A G+ A ++ V++ L L +D +SGGQ Sbjct: 92 PNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQ 150 Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSM 194 +QR+ +AR + + ++L+DEP + DP H+I L++++ ++ T+++++H+++ + Sbjct: 151 QQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL--KKNYTIVIVTHSMQQAR 208 Query: 195 QIATRFIVIAGGQIVYDGDPDRLMN 219 +I+ R G++V D + + Sbjct: 209 RISDRTAFFLMGELVEHDDTQVIFS 233 >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 75.1 bits (184), Expect = 2e-14 Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 19/211 (9%) Query: 16 MQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFK-----YPTRGSIFLNGQNHTRSSPS- 69 + DF+ + E ++GPSG GKST L + G I GQN S Sbjct: 23 ISLDFE--EKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 Query: 70 ---KRPLSILFQENNLFSHLTVWQNIALG-----IAPNLRLDHYQHAQVKQMLEKVFLED 121 ++ + ++FQ+ F +V+ N+A G + +D +KQ +D Sbjct: 81 VELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD 139 Query: 122 FFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQL 181 +R SGGQ+QR+ +AR L + ++LLDEP + DP EI L ++ + Q Sbjct: 140 NLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL--KHQY 197 Query: 182 TLLMISHNLEDSMQIATRFIVIAGGQIVYDG 212 T +M++HNL+ + +I+ + + G ++ G Sbjct: 198 TFIMVTHNLQQAGRISDQTAFLMNGDLIEAG 228 >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). Length = 500 Score = 74.9 bits (184), Expect = 2e-14 Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 21/225 (9%) Query: 1 MIKLDHLIYCYDNLKM--QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPT---RGS 55 ++++ ++ + +K D +V E + + G +GAGKSTL+ +++G YP G Sbjct: 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGV-YPHGTWDGE 59 Query: 56 IFLNGQ----NHTRSSPSKRPLSILFQENNLFSHLTVWQNIALG--IAPNLRLDHY--QH 107 I+ +G ++ R + + I+ QE L L+V +NI LG I Y + Sbjct: 60 IYWSGSPLKASNIRDTERA-GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY 118 Query: 108 AQVKQMLEKVFLEDFFNRFP-SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRH 166 + K +L ++ L+ P GGQ+Q V +A+ L +Q +L+LDEP + Sbjct: 119 LRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT---EK 175 Query: 167 EILGLLKQVCD--ERQLTLLMISHNLEDSMQIATRFIVIAGGQIV 209 E LL + D + + ISH L + + VI GQ V Sbjct: 176 ETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220 Score = 61.8 bits (150), Expect = 1e-10 Identities = 49/203 (24%), Positives = 104/203 (51%), Gaps = 16/203 (7%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTR--GSIFLNGQNHTRSSPSK--RPLSI 75 F + + E + + G GAG++ L+ + G YP + G++F+NG+ +P++ R Sbjct: 281 FSLRRGEILGVAGLVGAGRTELVQALFG-AYPGKFEGNVFINGKPVDIRNPAQAIRAGIA 339 Query: 76 LFQEN----NLFSHLTVWQNIALGI----APNLRLDHYQHAQ-VKQMLEKVFLEDFFNRF 126 + E+ + L V +NI L + +R+D Q + ++++ ++ Sbjct: 340 MVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFL 399 Query: 127 P-SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLM 185 P ++SGG +Q+ LA+ L+ +L+LDEP D ++EI L+ Q+ + + +++ Sbjct: 400 PIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLA-QEGVAIIV 458 Query: 186 ISHNLEDSMQIATRFIVIAGGQI 208 +S L + + ++ R +VI G++ Sbjct: 459 VSSELAEVLGLSDRVLVIGEGKL 481 >gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional. Length = 547 Score = 74.6 bits (184), Expect = 2e-14 Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 18/177 (10%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSK-RPL-SIL 76 + + + E + ++G +G+GKSTL L+ G P G I L+G+ T P R L S + Sbjct: 343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAV 402 Query: 77 FQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPS-QMSGGQR 135 F + +LF L + A ++ + + +M K+ LED R + ++S GQ+ Sbjct: 403 FTDFHLFDQLLGPEGKP---ANPALVEKW--LERLKMAHKLELED--GRISNLKLSKGQK 455 Query: 136 QRVALARCLIRQKPILLLDEPFAVFDPALR----HEILGLLKQVCDERQLTLLMISH 188 +R+AL L ++ ILLLDE A DP R +L LL+ E T+ ISH Sbjct: 456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQ----EMGKTIFAISH 508 >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 74.5 bits (183), Expect = 2e-14 Identities = 58/225 (25%), Positives = 117/225 (52%), Gaps = 32/225 (14%) Query: 11 YDNLKMQFDFQVN--KAERIVILGPSGAGKSTLL---SLMAGF--KYPTRGSIFLNGQN- 62 Y + ++ FD ++ K E +GPSG GKST L + M F +G + ++G + Sbjct: 15 YGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDV 74 Query: 63 HTRSSPS---KRPLSILFQENNLFSHLTVWQNIALGIAPNL--------RLDHYQHAQVK 111 ++ + + + ++FQ+ N F +++ N+A G P L +LD V+ Sbjct: 75 YSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYG--PKLHGLAKNKKKLDEI----VE 127 Query: 112 QMLEKVFL-EDFFNRFPS---QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHE 167 + L V L E+ +R ++SGGQ+QR+ +AR + + +LL+DEP + DP + Sbjct: 128 KSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNV 187 Query: 168 ILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDG 212 I L++++ ++ T+++++H+++ + +++ R G+IV Sbjct: 188 IENLIQEL--KKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYN 230 >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 592 Score = 74.4 bits (183), Expect = 2e-14 Identities = 73/243 (30%), Positives = 110/243 (45%), Gaps = 47/243 (19%) Query: 2 IKLDHLIYCY--DNLKMQFDFQVNKAER--IVILGPSGAGKSTLLSLMAGFKYPTRGSIF 57 I +D++ + Y DNL +Q + ++ R + ++G +G+GKSTL SL+ G+ T G I Sbjct: 341 IDIDNVSFAYRDDNLVLQ-NINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 Query: 58 LNGQNHTRSSPSKRPLSILFQENNLFSHLTVWQNIAL----------GIAPNLRLD-HYQ 106 L+G RPLS L SH + Q +A+ N+ L Sbjct: 400 LDG----------RPLSSL-------SHSVLRQGVAMVQQDPVVLADTFLANVTLGRDIS 442 Query: 107 HAQVKQMLEKVFLEDFFNRFP-----------SQMSGGQRQRVALARCLIRQKPILLLDE 155 QV Q LE V L + P + +S GQ+Q +ALAR L++ IL+LDE Sbjct: 443 EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDE 502 Query: 156 PFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPD 215 A D I L V TL++I+H L ++ A +V+ GQ V G Sbjct: 503 ATANIDSGTEQAIQQALAAV--REHTTLVVIAHRLSTIVE-ADTILVLHRGQAVEQGTHQ 559 Query: 216 RLM 218 +L+ Sbjct: 560 QLL 562 >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional. Length = 265 Score = 73.9 bits (181), Expect = 3e-14 Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 20/223 (8%) Query: 11 YDNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFK--YPTR---GSIFLNGQNHTR 65 Y LK + V++ + ++GPSG GKST L YP G I L+ N Sbjct: 29 YQALK-NINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87 Query: 66 SSPSKRPL------SILFQENNLFSHLTVWQNIALGI-APNLRLDHYQHAQVKQMLEKVF 118 SP P+ S++FQ+ N F ++++N+A G+ ++ +V+ L Sbjct: 88 LSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAA 146 Query: 119 L----EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQ 174 L +D +SGGQ+QR+ +AR L ILL DEP + DP I L+ Sbjct: 147 LWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISD 206 Query: 175 VCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217 + + ++T+L+++HN++ + +++ + G+++ G D + Sbjct: 207 LKN--KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247 >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional. Length = 253 Score = 73.7 bits (181), Expect = 4e-14 Identities = 56/186 (30%), Positives = 99/186 (53%), Gaps = 25/186 (13%) Query: 30 ILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQN----HTRSSPSKRPLSILFQ 78 ++GPSG GKST L L+ G + G I L+G+N H +R + ++FQ Sbjct: 37 LIGPSGCGKSTFLRCLNRMNDLIPGAR--VEGEILLDGENIYDPHVDVVELRRRVGMVFQ 94 Query: 79 ENNLFSHLTVWQNIALGIAPN-LRLDHYQHAQVKQMLEKVFL----EDFFNRFPSQMSGG 133 + N F ++++N+A G+ N ++ Y +V++ L L +D + +SGG Sbjct: 95 KPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGG 153 Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDS 193 Q+QR+ +AR L + +LL+DEP + DP +I L+ ++ + + T+++++HN Sbjct: 154 QQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL--KARYTIIIVTHN---- 207 Query: 194 MQIATR 199 MQ A R Sbjct: 208 MQQAAR 213 >gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. Length = 253 Score = 73.7 bits (181), Expect = 4e-14 Identities = 55/220 (25%), Positives = 102/220 (46%), Gaps = 25/220 (11%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQE 79 F + E + I+G SG+GKSTLL +AG P G+ + S ++ L L + Sbjct: 24 FDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTA-----TYIMRSGAELELYQLSEA 78 Query: 80 NNLFSHLTVWQNIALGIAPNLRLD-----------------HY--QHAQVKQMLEKVFLE 120 T W + LR+ HY A LE+V ++ Sbjct: 79 ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEID 138 Query: 121 -DFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDER 179 + P SGG +QR+ +AR L+ + ++ +DEP D +++ +L LL+ + + Sbjct: 139 PTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDL 198 Query: 180 QLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 L +++++H+L + +A R +V+ G++V G D++++ Sbjct: 199 GLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD 238 >gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 73.4 bits (180), Expect = 5e-14 Identities = 50/204 (24%), Positives = 107/204 (52%), Gaps = 21/204 (10%) Query: 30 ILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQ----NHTRSSPSKRPLSILFQ 78 ++GPSG GKST + L+ GF++ G I+L+G ++ + ++FQ Sbjct: 34 LIGPSGCGKSTFIRTLNRMNDLIPGFRH--EGHIYLDGVDIYDPAVDVVELRKKVGMVFQ 91 Query: 79 ENNLFSHLTVWQNIALGIAPNLRLDH-YQHAQVKQMLEKVFL----EDFFNRFPSQMSGG 133 + N F +++ N+A G+ + D + +V++ L+ L +D ++ +SGG Sbjct: 92 KPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGG 150 Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDS 193 Q+QR+ +AR + ++L+DEP + DP +I L+ ++ + T+++++HN++ + Sbjct: 151 QQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL--KEDYTIVIVTHNMQQA 208 Query: 194 MQIATRFIVIAGGQIVYDGDPDRL 217 +++ G+I+ G D++ Sbjct: 209 TRVSKYTSFFLNGEIIESGLTDQI 232 >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional. Length = 272 Score = 72.6 bits (178), Expect = 8e-14 Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 8/177 (4%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQE 79 F V ++G +G+GKSTL + GF G I + GQ TR + K ++ + Q Sbjct: 28 FTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQP-TRQALQKNLVAYVPQS 86 Query: 80 NNL-FSHLTVWQNIAL----GIAPNLRL-DHYQHAQVKQMLEKVFLEDFFNRFPSQMSGG 133 + +S + +++ + G LR V L +V + +F +R ++SGG Sbjct: 87 EEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGG 146 Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNL 190 Q++RV LAR + +Q ++LLDEPF D I+ LL+++ DE + T+L+ +HNL Sbjct: 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGK-TMLVSTHNL 202 >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional. Length = 271 Score = 72.6 bits (178), Expect = 9e-14 Identities = 55/212 (25%), Positives = 103/212 (48%), Gaps = 37/212 (17%) Query: 30 ILGPSGAGKST-------LLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPL----SILFQ 78 I+GPSG GKST ++ L+ K T G I QN S S L ++FQ Sbjct: 55 IIGPSGCGKSTYIKTLNRMVELVPSVK--TTGKILYRDQNIFDKSYSVEELRTNVGMVFQ 112 Query: 79 ENNLFSHLTVWQNIALG-----IAPNLRLDHYQHAQVKQMLEKVF--------LEDFFNR 125 + N F +++ N+ G I LD +++EK L+D + Sbjct: 113 KPNPFPK-SIYDNVTYGPKIHGIKDKKTLD--------EIVEKSLRGAAIWDELKDRLHD 163 Query: 126 FPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLM 185 +SGGQ+QR+ +ARCL + ++L+DEP + DP ++ L++++ ++ ++++ Sbjct: 164 NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL--KKDYSIII 221 Query: 186 ISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217 ++HN++ + +I+ + G + D D++ Sbjct: 222 VTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional. Length = 250 Score = 72.0 bits (177), Expect = 1e-13 Identities = 57/215 (26%), Positives = 112/215 (52%), Gaps = 25/215 (11%) Query: 21 QVNKAERIVILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHTRSSPS---- 69 + + + ++GPSG GKST L L+ K G + L+GQ+ +S Sbjct: 25 DIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK--IEGEVLLDGQDIYKSDIDVNQL 82 Query: 70 KRPLSILFQENNLFSHLTVWQNIAL-----GIAPNLRLDHYQHAQVKQ--MLEKVFLEDF 122 ++ + ++FQ+ N F ++++ N+A GI +LD +K + ++V +D Sbjct: 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEV--KDR 139 Query: 123 FNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLT 182 + +SGGQ+QR+ +AR L + +LL+DEP + DP +I L++++ ++ T Sbjct: 140 LKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL--KKDYT 197 Query: 183 LLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217 +++++HN++ + +I+ + G+IV GD L Sbjct: 198 IVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 >gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional. Length = 274 Score = 72.0 bits (176), Expect = 1e-13 Identities = 51/192 (26%), Positives = 95/192 (49%), Gaps = 19/192 (9%) Query: 20 FQVNKAERIVILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQN----HTRSSP 68 ++ + I +GPSG GKSTLL L+ G K G + +N S Sbjct: 41 LKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAK--VEGRLLYRDRNIYDSQINSVK 98 Query: 69 SKRPLSILFQENNLFSHLTVWQNIALGIAPNL---RLDHYQHAQVKQMLEKVFLEDFFNR 125 +R + ++FQ N F ++++NIA N LD +++ ++D Sbjct: 99 LRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKE 157 Query: 126 FPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLM 185 + +SGGQ+QR+ +AR + + +LL+DEP + DP ++ L ++ + Q T++M Sbjct: 158 KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL--KEQYTIIM 215 Query: 186 ISHNLEDSMQIA 197 ++HN++ + ++A Sbjct: 216 VTHNMQQASRVA 227 >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 Score = 72.0 bits (177), Expect = 1e-13 Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 22/196 (11%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNH----TRSSPSK----R 71 VN E + + GPSGAGKSTLL + P G I + + ++SP + R Sbjct: 29 LTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVR 88 Query: 72 PLSILFQENNL-----FSHLTVWQN--IALGIAPNLRLDHYQHAQVKQMLEKVFL-EDFF 123 +I + L S L V + G+ A+ +++L ++ + E + Sbjct: 89 RKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREA-----ARARARELLARLNIPERLW 143 Query: 124 NRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183 + P+ SGG++QRV +AR I PILLLDEP A D A R ++ L+ + R L Sbjct: 144 HLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEA-KARGAAL 202 Query: 184 LMISHNLEDSMQIATR 199 + I H+ E +A R Sbjct: 203 IGIFHDEEVRELVADR 218 >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional. Length = 252 Score = 71.7 bits (176), Expect = 1e-13 Identities = 63/221 (28%), Positives = 105/221 (47%), Gaps = 30/221 (13%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLM--AGFKYP---TRGSIFLNGQN----HTRSSPS 69 DF N E ++GPSG+GKSTLL + P GSI NG N T + Sbjct: 27 DFYPN--EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL 84 Query: 70 KRPLSILFQENNLFSHLTVWQNIALGIAPN-----LRLDHYQHAQVKQ--MLEKVFLEDF 122 ++ + ++FQ+ N F +++++N+ G+ LD +K + ++V +D Sbjct: 85 RKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV--KDR 141 Query: 123 FNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDP---ALRHEILGLLKQVCDER 179 + +SGGQ+QRV +AR L I+LLDEP + DP E L LK Sbjct: 142 LHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD----- 196 Query: 180 QLTLLMISHNLEDSMQIATRFIVIAGGQIV-YDGDPDRLMN 219 T+L+++ +++ + +I+ R G ++ Y+ MN Sbjct: 197 DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237 >gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional. Length = 268 Score = 71.9 bits (176), Expect = 1e-13 Identities = 56/216 (25%), Positives = 106/216 (49%), Gaps = 23/216 (10%) Query: 19 DFQVNKAERIVILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHTRSSPS-- 69 + K ++GPSG GKST L L+ + + G I G N S+ + Sbjct: 41 SMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR--SEGEILYEGLNILDSNINVV 98 Query: 70 --KRPLSILFQENNLFSHLTVWQNI--ALGIAPNLRLDHYQHAQVKQMLEKVFL----ED 121 +R + ++FQ+ N F +++ NI AL A R V++ L K L +D Sbjct: 99 NLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEI-VEESLTKAALWDEVKD 156 Query: 122 FFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQL 181 + +SGGQ+QR+ +AR L + +LLLDEP + DP +I L+ ++ + + Sbjct: 157 RLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL--KEEY 214 Query: 182 TLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217 ++++++HN++ +++++ R G +V +++ Sbjct: 215 SIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional. Length = 326 Score = 71.3 bits (175), Expect = 2e-13 Identities = 61/211 (28%), Positives = 107/211 (50%), Gaps = 20/211 (9%) Query: 20 FQVNKAERIVILGPSGAGKS-TLLSLMAGFKYPTR---GSIFLNGQNHTRSSPSKR---- 71 + V + E + I+G SG+GKS + L++M YP R + NGQ+ R S +R Sbjct: 28 YSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLV 87 Query: 72 --PLSILFQE--NNLFSHLTVWQNIALGIAPNL---RLDHYQHAQVKQMLEKVFLEDFFN 124 ++++FQ+ +L TV I I + + Q A +L +V + D + Sbjct: 88 GAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRA--IDLLNQVGIPDPAS 145 Query: 125 R---FPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQL 181 R +P Q+SGG QRV +A + + +L+ DEP D ++ +I+ LL ++ + + Sbjct: 146 RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENM 205 Query: 182 TLLMISHNLEDSMQIATRFIVIAGGQIVYDG 212 L++I+H+L + A + IV+ GQ+V G Sbjct: 206 ALVLITHDLALVAEAAHKIIVMYAGQVVETG 236 >gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional. Length = 285 Score = 71.4 bits (175), Expect = 2e-13 Identities = 58/213 (27%), Positives = 112/213 (52%), Gaps = 26/213 (12%) Query: 30 ILGPSGAGKSTLL---SLMAGFKYPTR--GSIFLNGQNHTRSSPS----KRPLSILFQEN 80 ++GPSG GKST L + M R G + G+N + +R + ++FQ+ Sbjct: 70 MIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKP 129 Query: 81 NLFSHLTVWQNIALGIAPNLRLDHYQ---HAQVKQMLEKVFL----EDFFNRFPSQMSGG 133 N F +++ N+A G L++ Y +V++ L + L +D + +SGG Sbjct: 130 NPFPK-SIYDNVAYG----LKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGG 184 Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDS 193 Q+QR+ +AR + ++L+DEP + DP +I L++++ +E T+++++HN++ + Sbjct: 185 QQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE--YTVVIVTHNMQQA 242 Query: 194 MQIATRFIV-IAGGQIVYDGDPDRLMNGLIPES 225 +I+ + V + GG++V D D++ PES Sbjct: 243 ARISDKTAVFLTGGELVEFDDTDKIFEN--PES 273 >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 272 Score = 70.6 bits (173), Expect = 3e-13 Identities = 60/223 (26%), Positives = 93/223 (41%), Gaps = 23/223 (10%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAG-FKYPT-------RGSIFLNGQNHTRSSPSK 70 ++ +LG +GAGKSTLL +AG G + LNG+ + Sbjct: 21 SLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 Query: 71 --RPLSILFQENNLFSHLTVWQNIALGIAPNLR----LDHYQHAQVKQMLEKVFLEDFFN 124 R ++L Q + + + LG P+ R L H Q L Sbjct: 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVG 140 Query: 125 RFPSQMSGGQRQRVALARCLIRQKP---------ILLLDEPFAVFDPALRHEILGLLKQV 175 R + +SGG+ RV AR L + P LLLDEP A D A +H +L ++++ Sbjct: 141 RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRL 200 Query: 176 CDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLM 218 + L +L I H+ + + A R ++A G IV G P ++ Sbjct: 201 ARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243 >gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional. Length = 1495 Score = 70.4 bits (172), Expect = 3e-13 Identities = 58/214 (27%), Positives = 111/214 (51%), Gaps = 26/214 (12%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLSILF 77 F V+ +E++ ++G +GAGKS++L+ + +G I ++ + + + +R LSI+ Sbjct: 1257 FFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIP 1316 Query: 78 QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP---------- 127 Q LFS + I P + A + + LE+ ++D +R P Sbjct: 1317 QSPVLFS-----GTVRFNIDP---FSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 Query: 128 -SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDE-RQLTLLM 185 S GQRQ ++LAR L+R+ IL+LDE A D +R + L + + + +E + T+L+ Sbjct: 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVD--VRTDSL-IQRTIREEFKSCTMLV 1425 Query: 186 ISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 I+H L +++ + +V++ GQ++ P L++ Sbjct: 1426 IAHRL-NTIIDCDKILVLSSGQVLEYDSPQELLS 1458 Score = 43.0 bits (101), Expect = 6e-05 Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 31/154 (20%) Query: 28 IVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRP-LSILFQENNLFSHL 86 + I+G +G GK++L+S M G S + R S + P +S +F Sbjct: 646 VAIVGGTGEGKTSLISAMLGELSHAETSSVV-----IRGSVAYVPQVSWIFNA------- 693 Query: 87 TVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQ-----------MSGGQR 135 TV +NI G ++ + + ++ L+ + P + +SGGQ+ Sbjct: 694 TVRENILFG-------SDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQK 746 Query: 136 QRVALARCLIRQKPILLLDEPFAVFDPALRHEIL 169 QRV++AR + I + D+P + D + H++ Sbjct: 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF 780 >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional. Length = 260 Score = 70.4 bits (173), Expect = 4e-13 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 29/188 (15%) Query: 30 ILGPSGAGKSTLLSL---MAGFKYP---TRGSIFLNGQNHTRSSPSKRPLSIL------- 76 +GPSG GKSTLL M YP G I L+G+N K+ +++L Sbjct: 44 FIGPSGCGKSTLLRTFNRMYEL-YPEQRAEGEILLDGENIL---TPKQDIALLRAKVGMV 99 Query: 77 FQENNLFSHLTVWQNIALGIAPNLRLDHYQ-HAQVKQMLEKVFL----EDFFNRFPSQMS 131 FQ+ F ++++ NIA G+ +L + +V+ L K L +D ++ +S Sbjct: 100 FQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLS 158 Query: 132 GGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLE 191 GGQ+QR+ +AR + + +LLLDEP + DP I L+ ++ ++ T+++++HN Sbjct: 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL--KQDYTVVIVTHN-- 214 Query: 192 DSMQIATR 199 MQ A R Sbjct: 215 --MQQAAR 220 >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional. Length = 590 Score = 70.2 bits (173), Expect = 5e-13 Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 24/189 (12%) Query: 21 QVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILF--Q 78 ++ + E I I+GP+G GK+T L+AG P G + L I + Q Sbjct: 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQ 407 Query: 79 ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRV 138 TV + I +L +Y+ ++++ + LE ++ +SGG+ QRV Sbjct: 408 YIKPDYDGTVEDLLR-SITDDLGSSYYKS----EIIKPLQLERLLDKNVKDLSGGELQRV 462 Query: 139 ALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQ--I 196 A+A CL R + LLDEP A D R + ++++ +ER+ T L++ H++ M I Sbjct: 463 AIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI--YMIDYI 520 Query: 197 ATRFIVIAG 205 + R +V G Sbjct: 521 SDRLMVFEG 529 Score = 42.1 bits (100), Expect = 1e-04 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 37/150 (24%) Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHLTVW 89 ILGP+G GK+T + +++G P G PS + F+ L ++ Sbjct: 104 ILGPNGIGKTTAVKILSGELIPNLGD--------YEEEPSWDEVLKRFRGTELQNYF--- 152 Query: 90 QNIALGIAPNLRLDH---YQHA-------QVKQMLEKV-------------FLEDFFNRF 126 + + G +++ H Y +V+++L+KV LE+ +R Sbjct: 153 KKLYNG---EIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRD 209 Query: 127 PSQMSGGQRQRVALARCLIRQKPILLLDEP 156 S++SGG+ QRVA+A L+R DEP Sbjct: 210 ISELSGGELQRVAIAAALLRDADFYFFDEP 239 >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 70.1 bits (171), Expect = 5e-13 Identities = 54/200 (27%), Positives = 105/200 (52%), Gaps = 31/200 (15%) Query: 13 NLKMQF-DFQVNKAERIVILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHT 64 N+ M F + Q+ I+GPSG GKSTLL +++G + G++ L+ +N Sbjct: 22 NINMDFPERQIT-----AIIGPSGCGKSTLLRALNRMNDIVSGARL--EGAVLLDNEN-- 72 Query: 65 RSSPS------KRPLSILFQENNLFSHLTVWQNIA-----LGIAPNLRLDHYQHAQVKQM 113 SP+ ++ + ++FQ+ N F +++ N+A LG RLD ++Q Sbjct: 73 IYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQA 131 Query: 114 LEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLK 173 ++D ++ +SGGQ+QR+ +AR L + ++L+DEP + DP I L++ Sbjct: 132 ALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQ 191 Query: 174 QVCDERQLTLLMISHNLEDS 193 ++ ++ T+ +++HN++ + Sbjct: 192 EL--KQNYTIAIVTHNMQQA 209 >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional. Length = 305 Score = 69.9 bits (171), Expect = 5e-13 Identities = 62/223 (27%), Positives = 115/223 (51%), Gaps = 32/223 (14%) Query: 30 ILGPSGAGKSTLLSLMAGFKYPTR-----GSIFLNGQNHTRSSPS----KRPLSILFQEN 80 ++GPSG GKST L + + GS+ L+GQ+ + + ++ + ++FQ Sbjct: 76 LIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSP 135 Query: 81 NLFSHLTVWQNIALG----------IAPNL--RLDHYQHAQ-VKQMLEKVFLEDFFN-RF 126 N F ++ +NI+ G + L R D + V++ L + L D N R Sbjct: 136 NPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 Query: 127 PSQ---MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183 +SGGQ+QR+ +ARCL ++L+DEP + DP +I L++++ +E T+ Sbjct: 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE--YTV 252 Query: 184 LMISHNLEDSMQIATRFIV-IAGGQIVYDGDPDRLMNGLIPES 225 ++++HN++ + +I+ + V + GG++V D D++ PES Sbjct: 253 VVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFEN--PES 293 >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional. Length = 258 Score = 69.4 bits (170), Expect = 7e-13 Identities = 55/243 (22%), Positives = 114/243 (46%), Gaps = 30/243 (12%) Query: 2 IKLDHLIYCYDNLKMQFDFQVNKAERIV--ILGPSGAGKSTLLSLMAGFKYPT-----RG 54 I + L Y + D +N R V +GPSG GKST+L + G Sbjct: 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEG 64 Query: 55 SIFLNGQNHTRSSPS----KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQV 110 + L+G++ +R + ++FQ N F +++ N+ G+ N + Sbjct: 65 EVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLN---GVRNKKDL 121 Query: 111 KQMLEKVF--------LEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDP 162 +++EK ++D ++ +SGGQ+QR+ +AR + + +LL+DEP + DP Sbjct: 122 DELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP 181 Query: 163 ALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIA--TRFIVIAG----GQIVYDGDPDR 216 I L+ ++ ++ T+++++HN++ + +++ T F + G++V D ++ Sbjct: 182 ISTLAIEDLINEL--KQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEK 239 Query: 217 LMN 219 + + Sbjct: 240 IFS 242 >gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional. Length = 286 Score = 69.2 bits (169), Expect = 9e-13 Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 25/186 (13%) Query: 30 ILGPSGAGKSTLLSLMAGFK--YP---TRGSIFLNGQN----HTRSSPSKRPLSILFQEN 80 I+GPSG GKST L + P T G++ +G++ T ++ + ++FQ+ Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129 Query: 81 NLFSHLTVWQNIALGIAPNLR--LDHYQHAQ-VKQMLEKVFL----EDFFNRFPSQMSGG 133 N F +++ NIA G P L D Q + V++ L K L D ++ +SGG Sbjct: 130 NPFPK-SIFDNIAYG--PRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGG 186 Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDS 193 Q+QR+ +AR L + ILLLDEP + DP +I L++++ T+++++HN Sbjct: 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL--RGSYTIMIVTHN---- 240 Query: 194 MQIATR 199 MQ A+R Sbjct: 241 MQQASR 246 >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional. Length = 258 Score = 69.2 bits (170), Expect = 9e-13 Identities = 55/226 (24%), Positives = 104/226 (46%), Gaps = 37/226 (16%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQN------HTRSSPSKRP 72 F + E + I+G SG+GK+TLL+ ++ P G + ++ + S +R Sbjct: 26 SFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRR 85 Query: 73 LSILFQENNLFSHLTVW----QNIALGIAPNL--------RL-----DHYQH--AQVKQM 113 L T W Q+ G+ + RL HY A Sbjct: 86 L-----------LRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDW 134 Query: 114 LEKVFLE-DFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLL 172 LE+V ++ + P+ SGG +QR+ +AR L+ ++ +DEP D +++ +L LL Sbjct: 135 LERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLL 194 Query: 173 KQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLM 218 + + E L +++++H+L + +A R +V+ G++V G D+++ Sbjct: 195 RGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVL 240 >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 68.8 bits (168), Expect = 1e-12 Identities = 52/210 (24%), Positives = 110/210 (52%), Gaps = 33/210 (15%) Query: 30 ILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHTRSSPS----KRPLSILFQ 78 ++GPSG GKST L L++ K G + L+G+N ++ + ++FQ Sbjct: 35 LIGPSGCGKSTFLRCLNRMNDLISNVK--IEGEVLLDGKNIYDKDVDVVELRKRVGMVFQ 92 Query: 79 ENNLFSHLTVWQNIALG-----IAPNLRLDHYQHAQVKQMLEKVFL----EDFFNRFPSQ 129 + N F ++++ N+A G I LD V+ L+K L +D + + Sbjct: 93 KPNPFP-MSIYDNVAYGPRIHGIKDKKELDKI----VEWALKKAALWDEVKDDLKKSALK 147 Query: 130 MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189 +SGGQ+QR+ +AR + + ++L+DEP + DP +I L+ ++ +++ T+++++HN Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL--KKEYTIVIVTHN 205 Query: 190 LEDSMQIA--TRFIVIAGGQIVYDGDPDRL 217 ++ + +++ T F ++ G ++ +++ Sbjct: 206 MQQASRVSDYTAFFLM--GDLIEFNKTEKI 233 >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional. Length = 246 Score = 68.1 bits (166), Expect = 2e-12 Identities = 60/234 (25%), Positives = 111/234 (47%), Gaps = 18/234 (7%) Query: 6 HLIYCYDNLKMQFDFQVNKAERIVILGPSGAGKSTLL---SLMAGFKYPTRGSIFLNGQN 62 +L Y + Q+ + + ++G SG GKST L + M G + + G++ Sbjct: 9 NLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKD 68 Query: 63 HTRSS--PSKRPLSILFQENNLFSHLTVWQNIALGIAPNL----RLDHYQHAQVKQMLEK 116 ++ + ++FQ+ N+F ++++NI+ AP L + + A V L+K Sbjct: 69 VKNQDVVALRKNVGMVFQQPNVFVK-SIYENISY--APKLHGMIKNKDEEEALVVDCLQK 125 Query: 117 VFL----EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLL 172 V L +D + +SGGQ+QR+ +AR L + +LLLDEP + DP I LL Sbjct: 126 VGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL 185 Query: 173 KQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGLIPEST 226 K++ L+++M++HN++ ++A G+++ G+ E T Sbjct: 186 KEL--SHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEKT 237 >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 67.2 bits (164), Expect = 3e-12 Identities = 53/216 (24%), Positives = 113/216 (52%), Gaps = 23/216 (10%) Query: 19 DFQVNKAERIVILGPSGAGKSTL---LSLMAGFKYPTR--GSIFLNGQNHTRSSPS---- 69 + + + E I+GPSG GKST L+LM + G + NG N + Sbjct: 32 NLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVEL 91 Query: 70 KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEK-----VFLEDFFN 124 ++ + ++FQ+ N F +++ N+A G P + + ++++++EK ++ + Sbjct: 92 RKNIGMVFQKGNPFPQ-SIFDNVAYG--PRIHGTKNKK-KLQEIVEKSLKDVALWDEVKD 147 Query: 125 RFPSQ---MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQL 181 R +Q +SGGQ+QR+ +AR L +LL+DEP + DP +I L+ ++ + + Sbjct: 148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KY 205 Query: 182 TLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL 217 T+++++HN++ + +++ + G++V D +++ Sbjct: 206 TIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional. Length = 272 Score = 65.8 bits (161), Expect = 9e-12 Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 39/204 (19%) Query: 19 DFQVNKAERIVILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHTRSS---- 67 ++ K +GPSG GKSTLL L+ + G I L+GQN Sbjct: 45 SMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR--IEGEIRLDGQNIYDKKVDVA 102 Query: 68 PSKRPLSILFQENNLFSHLTVWQNIALG-----IAPNLRLDHYQHAQVKQMLEKVFL--- 119 +R + ++FQ N F ++++N+ G I LD V++ L L Sbjct: 103 ELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDE----AVERSLRGAALWDE 157 Query: 120 -EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDP---ALRHEILGLLKQV 175 +D + +SGGQ+QR+ +AR + + +LLLDEP + DP E++ LK Sbjct: 158 VKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS- 216 Query: 176 CDERQLTLLMISHNLEDSMQIATR 199 + T+++++HN MQ A R Sbjct: 217 ----KYTIVIVTHN----MQQAAR 232 >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 65.4 bits (159), Expect = 1e-11 Identities = 57/195 (29%), Positives = 105/195 (53%), Gaps = 16/195 (8%) Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS----KRPLSILFQ--ENNLF 83 ++G +G GKSTL ++G P +G++ G+ S ++ ++ +FQ E +F Sbjct: 32 LVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 Query: 84 SHLTVWQNIALGIAPNLRLDHYQHAQV-KQMLEKVFLED--FFNRFPSQ-MSGGQRQRVA 139 + +I IA +LR A++ +++ E + L D F P Q +S GQ++RVA Sbjct: 92 -----YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVA 146 Query: 140 LARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATR 199 +A L+ Q LLLDEP A DPA R +++ +++++ + +++ SH+++ +I+ Sbjct: 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGN-HVIISSHDIDLIYEISDA 205 Query: 200 FIVIAGGQIVYDGDP 214 V+ GQI+ G P Sbjct: 206 VYVLRQGQILTHGAP 220 >gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 65.5 bits (160), Expect = 1e-11 Identities = 56/197 (28%), Positives = 100/197 (50%), Gaps = 25/197 (12%) Query: 19 DFQVNKAERIVILGPSGAGKSTLL-SL--MAGFKYPTR--GSIFLNGQNHTRSSPS---- 69 D Q K + ++GPSG+GKST L SL M R G I G + R + Sbjct: 40 DMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEM 99 Query: 70 KRPLSILFQENNLFSHLTVWQNIAL-----GIAPNLRLDHYQHAQVKQ--MLEKVFLEDF 122 ++ + ++FQ N F+ ++++NI G+ LD +KQ + ++V +D Sbjct: 100 RKHIGMVFQRPNPFAK-SIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV--KDD 156 Query: 123 FNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLT 182 ++ +SGGQ+QR+ +AR + + ILL+DEP + DP ++ + ++ ++ T Sbjct: 157 LHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL--KKNYT 214 Query: 183 LLMISHNLEDSMQIATR 199 +++++HN MQ A R Sbjct: 215 IIIVTHN----MQQAAR 227 >gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. Length = 1522 Score = 65.4 bits (159), Expect = 1e-11 Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 24/210 (11%) Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLSILFQE 79 ++ E++ I+G +GAGKS+L + G I ++G N + + ++I+ Q+ Sbjct: 1309 IHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQD 1368 Query: 80 NNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQM--------- 130 LFS ++ + + P Y +V LE L+ F + P ++ Sbjct: 1369 PVLFS-----GSLRMNLDP---FSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGE 1420 Query: 131 --SGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISH 188 S GQRQ V LAR L+R+ IL+LDE A D + I ++ ++ T+L I+H Sbjct: 1421 NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFED--CTVLTIAH 1478 Query: 189 NLEDSMQIATRFIVIAGGQIVYDGDPDRLM 218 L M TR IV+ G++ G P L+ Sbjct: 1479 RLNTIMDY-TRVIVLDKGEVAEFGAPSNLL 1507 Score = 57.3 bits (138), Expect = 3e-09 Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 44/208 (21%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQ 78 F + + + ++G G GKS+LLS + G + + G S + P Q Sbjct: 658 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------SVAYVPQQAWIQ 711 Query: 79 ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPS---------- 128 ++L +NI G A L +YQ Q+LE L PS Sbjct: 712 NDSL------RENILFGKA--LNEKYYQ-----QVLEACALLPDLEILPSGDRTEIGEKG 758 Query: 129 -QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEIL-------GLLKQVCDERQ 180 +SGGQ+QRV+LAR + I L D+P + D + I G+LK Sbjct: 759 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNK----- 813 Query: 181 LTLLMISHNLEDSMQIATRFIVIAGGQI 208 T ++++H + Q+ IV++GG+I Sbjct: 814 -TRILVTHGISYLPQVDV-IIVMSGGKI 839 >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional. Length = 269 Score = 65.2 bits (159), Expect = 1e-11 Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 31/188 (16%) Query: 30 ILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQN--HTRSSPS--KRPLSILFQ 78 ++GPSG GKST+L L+ G +G + +G + R P +R + ++FQ Sbjct: 44 LIGPSGCGKSTVLRSLNRMNDLIEGCSL--KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQ 101 Query: 79 ENNLFSHLTVWQNIALGIAPNLRLDHYQ---HAQVKQMLEKVFL----EDFFNRFPSQMS 131 + N F ++++NIA G R++ Y V++ L K + +D N +S Sbjct: 102 QPNPFPK-SIYENIAFGA----RINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLS 156 Query: 132 GGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLE 191 GGQ+QR+ +AR + + ++L+DEP + DP +I + ++ ++ T+++++HN Sbjct: 157 GGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL--KKNFTIVIVTHN-- 212 Query: 192 DSMQIATR 199 MQ A R Sbjct: 213 --MQQAVR 218 >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional. Length = 329 Score = 65.1 bits (158), Expect = 1e-11 Identities = 55/222 (24%), Positives = 109/222 (49%), Gaps = 39/222 (17%) Query: 16 MQFDFQVNKAERIVILGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHTRSSP 68 + D + NK +GPSG GKST L L+ G + G I+ G N TRS Sbjct: 101 LNLDIKRNKV--TAFIGPSGCGKSTFLRNLNQLNDLIEGTSH--EGEIYFLGTN-TRSKK 155 Query: 69 S-----KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVF----- 118 + + ++FQ+ F ++++ N+A G N D +++LEK+ Sbjct: 156 ISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRNNGIND-------RKILEKIVEKSLK 207 Query: 119 -------LEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGL 171 ++D ++ + +SGGQ+QR+ +AR + + +LL+DEP + DP +I L Sbjct: 208 SAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL 267 Query: 172 LKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGD 213 + ++ +++ ++++++H++ + +I+ + G I G+ Sbjct: 268 ILEL--KKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 >gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional. Length = 254 Score = 65.1 bits (159), Expect = 2e-11 Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 25/211 (11%) Query: 19 DFQVNKAERIVILGPSGAGKS-----TLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPL 73 + + + ++G SG+GKS L L AG + T G + L+G+ + R + Sbjct: 23 SLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQ-TAGRVLLDGKPVAPCALRGRKI 81 Query: 74 SILFQE--------NNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLED---F 122 + + Q + + +H +ALG + A + LE V LE+ Sbjct: 82 ATIMQNPRSAFNPLHTMHTH-ARETCLALGKPADD-------ATLTAALEAVGLENAARV 133 Query: 123 FNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLT 182 +P +MSGG QR+ +A L+ + P ++ DEP D + IL LL+ + +R L Sbjct: 134 LKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALG 193 Query: 183 LLMISHNLEDSMQIATRFIVIAGGQIVYDGD 213 +L+++H++ ++A V++ G+IV GD Sbjct: 194 MLLVTHDMGVVARLADDVAVMSHGRIVEQGD 224 >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 Score = 63.0 bits (154), Expect = 5e-11 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 44/165 (26%) Query: 27 RIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHL 86 +I +LG +GAGKSTLL +MAG G R +P + + L QE L Sbjct: 33 KIGVLGLNGAGKSTLLRIMAGVDKEFNGE--------ARPAPGIK-VGYLPQEPQLDPTK 83 Query: 87 TVWQNIALGIAPNLR-LDHYQH---------AQVKQMLEKVF-LEDFFN----------- 124 TV +N+ G+A LD + A + +L + L++ + Sbjct: 84 TVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKL 143 Query: 125 -------RFP------SQMSGGQRQRVALARCLIRQKPILLLDEP 156 R P +++SGG+R+RVAL R L+ + +LLLDEP Sbjct: 144 EIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188 Score = 56.9 bits (138), Expect = 4e-09 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 41/160 (25%) Query: 11 YDNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLN--------GQN 62 D+L F++ + ++GP+GAGKSTL ++ G + P G+I + Q+ Sbjct: 338 IDDL----SFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQS 393 Query: 63 HTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDF 122 P+K TVW+ I+ G LD Q + ++ + ++ F Sbjct: 394 RDALDPNK----------------TVWEEISGG------LDIIQLGKR-EVPSRAYVGRF 430 Query: 123 -F-----NRFPSQMSGGQRQRVALARCLIRQKPILLLDEP 156 F + Q+SGG+R RV LA+ L +LLLDEP Sbjct: 431 NFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEP 470 >gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed. Length = 635 Score = 63.0 bits (154), Expect = 6e-11 Identities = 59/197 (29%), Positives = 86/197 (43%), Gaps = 55/197 (27%) Query: 13 NLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI----------FLNGQN 62 L F QV + ++I ++GP+G GK+TLL LM G G I F Q+ Sbjct: 333 QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYF--DQH 390 Query: 63 HTRSSPSKRPLSILFQENNLFSHLTVWQNIALG---IAPNLRLDHYQHAQVKQMLEKVFL 119 P K TV N+A G + N R H +L +L Sbjct: 391 RAELDPEK----------------TVMDNLAEGKQEVMVNGRPRH--------VLG--YL 424 Query: 120 EDFFNRFPSQ--------MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGL 171 +DF F + +SGG+R R+ LAR ++ +L+LDEP D E L L Sbjct: 425 QDFL--FHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV----ETLEL 478 Query: 172 LKQVCDERQLTLLMISH 188 L+++ D Q T+L++SH Sbjct: 479 LEELLDSYQGTVLLVSH 495 Score = 47.6 bits (114), Expect = 3e-06 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 57/178 (32%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAG--------FKY------------PTR---GS 55 + + ER+ ++G +GAGKSTL+ ++ G Y P R G+ Sbjct: 23 ELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGT 82 Query: 56 IF------LNGQ-----------NHTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAP 98 ++ + Q + + PS++ L+ L + H +WQ Sbjct: 83 VYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQ-------- 134 Query: 99 NLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEP 156 L+ ++ ++L ++ L+ + S +SGG ++ AL R L+ +LLLDEP Sbjct: 135 ---LE----NRINEVLAQLGLDP--DAALSSLSGGWLRKAALGRALVSNPDVLLLDEP 183 >gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional. Length = 1622 Score = 62.1 bits (151), Expect = 1e-10 Identities = 64/216 (29%), Positives = 113/216 (52%), Gaps = 32/216 (14%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLSILF 77 F+++ +E++ I+G +GAGKS++L+ + RG I ++G + ++ ++ L I+ Sbjct: 1260 FEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIP 1319 Query: 78 QENNLFSHLTVWQNIALGIAPNLRLDHY-QH--AQVKQMLEKVFLEDFFNRFP------- 127 Q LFS TV N LD + +H A + + LE+ L+D R Sbjct: 1320 QAPVLFSG-TVRFN----------LDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEV 1368 Query: 128 ----SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDE-RQLT 182 S GQRQ ++LAR L+R+ IL+LDE A D +R + L + K + +E + T Sbjct: 1369 SEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVD--VRTDAL-IQKTIREEFKSCT 1425 Query: 183 LLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLM 218 +L+I+H L +++ R +V+ G++V P+ L+ Sbjct: 1426 MLIIAHRL-NTIIDCDRILVLDAGRVVEFDTPENLL 1460 Score = 37.4 bits (87), Expect = 0.003 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 20/99 (20%) Query: 130 MSGGQRQRVALARCLIRQKPILLLDEPFA---------VFDPALRHEILGLLKQVCDERQ 180 +SGGQ+QRV++AR + + + D+P + VFD ++ E+ R Sbjct: 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL----------RG 790 Query: 181 LTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 T +++++ L Q+ R I++ G I +G + L N Sbjct: 791 KTRVLVTNQLHFLSQV-DRIILVHEGMIKEEGTYEELSN 828 >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional. Length = 501 Score = 61.9 bits (151), Expect = 1e-10 Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 18/149 (12%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ----NHTRSSPSKRPLSI 75 F + ++G +GAGKSTLL +++G P GSI ++GQ T ++ + ++I Sbjct: 25 FDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA-GVAI 83 Query: 76 LFQENNLFSHLTVWQNIALGIAPNLR--LDHYQ-HAQVKQMLEKVFLE-DFFNRFPSQ-- 129 ++QE +L +TV +N+ LG P+ ++ + + ++ LE + ++ D P Sbjct: 84 IYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----PDTPL 138 Query: 130 --MSGGQRQRVALARCLIRQKPILLLDEP 156 +S GQRQ V +A+ L R ++ DEP Sbjct: 139 KYLSIGQRQMVEIAKALARNARVIAFDEP 167 Score = 56.8 bits (138), Expect = 4e-09 Identities = 54/231 (23%), Positives = 103/231 (44%), Gaps = 19/231 (8%) Query: 14 LKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSP--SKR 71 L+ F V E + + G GAG+S L+ L+ G T G ++L+G+ SP + R Sbjct: 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIR 327 Query: 72 PLSILFQENN----LFSHLTVWQNIALGIAPN-LRLDHYQHAQVKQMLEKVFLEDFFNRF 126 +L E+ + +V NI + + LR + + + F+ + Sbjct: 328 AGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT 387 Query: 127 PS------QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQ 180 PS +SGG +Q+ L R L ++LLDEP D +HEI ++ ++ + Sbjct: 388 PSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELA-AQG 446 Query: 181 LTLLMISHNLEDSMQIATRFIVIAGGQIV-----YDGDPDRLMNGLIPEST 226 + +L +S +L + + +A R +V+ G+I + ++ +P ++ Sbjct: 447 VAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQATERQALSLALPRTS 497 >gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. Length = 243 Score = 61.9 bits (151), Expect = 1e-10 Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 25/223 (11%) Query: 18 FDFQVNKAERIVILGPSGAGKSTLLSLMAG-FKYP-TRGSIFLNGQNHTRSSPSKRP--- 72 + V K E I+GP+G+GKSTL +AG Y T G+I GQ+ P +R Sbjct: 19 VNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 Query: 73 LSILFQ--------ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFL-EDFF 123 L + FQ N F + + L L + +K L + + E+F Sbjct: 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDF-LKLLKAKLALLGMDEEFL 137 Query: 124 NRFPSQ-MSGGQRQRVALARCLIRQKPILLLDEPFAVFD-PALR--HEILGLLKQVCDER 179 NR ++ SGG+++R + + + + + +LDE + D AL+ E + L+ E Sbjct: 138 NRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLR----EP 193 Query: 180 QLTLLMISHNLEDSMQIATRFI-VIAGGQIVYDGDPDRLMNGL 221 + L+I+H I ++ V+ G+IV GD + L L Sbjct: 194 DRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE-LAKEL 235 >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed. Length = 251 Score = 61.3 bits (149), Expect = 2e-10 Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 14/167 (8%) Query: 28 IVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHLT 87 + +LGP+GAGKSTL+ ++ G P G I NG+ P K L LT Sbjct: 33 LTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLP-------LT 85 Query: 88 VWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQ 147 V + + L P + + L++V + ++SGG+ QRV LAR L+ + Sbjct: 86 VNRFLRL--RPGTK-----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNR 138 Query: 148 KPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSM 194 +L+LDEP D + + L+ Q+ E +LM+SH+L M Sbjct: 139 PQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVM 185 >gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed. Length = 556 Score = 60.9 bits (149), Expect = 3e-10 Identities = 47/167 (28%), Positives = 68/167 (40%), Gaps = 50/167 (29%) Query: 28 IVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHLT 87 I +LG +GAGKSTLL +MAG G +P + + L QE L T Sbjct: 36 IGVLGLNGAGKSTLLRIMAGVDKEFEGEARP--------APGIK-VGYLPQEPQLDPEKT 86 Query: 88 VWQNIALGIAPNLRL--------------DHYQHAQVKQMLEKVFLEDFFN--------- 124 V +N+ G+A D A + E L++ + Sbjct: 87 VRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGE---LQEIIDAADAWDLDS 143 Query: 125 ---------RFP------SQMSGGQRQRVALARCLIRQKPILLLDEP 156 R P +++SGG+R+RVAL R L+ + +LLLDEP Sbjct: 144 QLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEP 190 Score = 52.0 bits (126), Expect = 1e-07 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 38/144 (26%) Query: 28 IV-ILGPSGAGKSTLLSLMAGFKYPTRGSIFLN--------GQNHTRSSPSKRPLSILFQ 78 IV I+GP+GAGKSTL ++ G + P G+I + Q+ P+K Sbjct: 352 IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNK-------- 403 Query: 79 ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQ------MSG 132 TVW+ I+ G LD + ++ + ++ F + Q +SG Sbjct: 404 --------TVWEEISGG------LDIIKVGNR-EIPSRAYVGRFNFKGGDQQKKVGVLSG 448 Query: 133 GQRQRVALARCLIRQKPILLLDEP 156 G+R R+ LA+ L + +LLLDEP Sbjct: 449 GERNRLHLAKTLKQGGNVLLLDEP 472 >gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional. Length = 659 Score = 60.7 bits (147), Expect = 3e-10 Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 16/148 (10%) Query: 26 ERIVILGPSGAGKSTLLSLMAGFKYPT--RGSIFLNGQNHTRSSPSKRPLSILFQENNLF 83 E + +LGPSG+GKSTLL+ +AG G+I N + T+ + + Q++ L+ Sbjct: 95 EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK--QILKRTGFVTQDDILY 152 Query: 84 SHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDF----------FNRFPSQMSGG 133 HLTV + + LRL Q K ++ + + + N F +SGG Sbjct: 153 PHLTVRETLVF--CSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGG 210 Query: 134 QRQRVALARCLIRQKPILLLDEPFAVFD 161 +R+RV++A ++ +L+LDEP + D Sbjct: 211 ERKRVSIAHEMLINPSLLILDEPTSGLD 238 >gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional. Length = 501 Score = 60.0 bits (146), Expect = 5e-10 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 21/204 (10%) Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRP---LSILFQENNLFSHL 86 ++G +GAGKST++ ++ G GSI G+ T + P + I+ QE NL L Sbjct: 35 LVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL 94 Query: 87 TVWQNIALG---IAPNLRLDHYQ-HAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALAR 142 T+ +NI LG + R+D + +A+ ++L ++ L ++ ++S G++Q V +A+ Sbjct: 95 TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAK 154 Query: 143 CLIRQKPILLLDEPF-AVFD---PALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIAT 198 L + ++++DEP A+ D +L I L Q ++ ISH L++ +I Sbjct: 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRG-----IVYISHRLKEIFEICD 209 Query: 199 RFIVIAGGQI-----VYDGDPDRL 217 V GQ V D D L Sbjct: 210 DVTVFRDGQFIAEREVADLTEDSL 233 Score = 59.6 bits (145), Expect = 7e-10 Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 26/208 (12%) Query: 20 FQVNKAERIVILGPSG---AGKSTLLSLMAGFKYPTRGSIFLNGQN-HTRSSPSKRPLSI 75 F + K E ILG SG AG++ L+ ++ G T G + L+G TRS I Sbjct: 273 FTLRKGE---ILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 Query: 76 LF-----QENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDF---FN-RF 126 ++ + + L ++V +N++L LR +K E+ + DF FN + Sbjct: 330 VYISEDRKRDGLVLGMSVKENMSL---TALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT 386 Query: 127 PSQ------MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQ 180 PS +SGG +Q+VA+AR L+ + +L+LDEP D + EI L+ Q E Sbjct: 387 PSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-G 445 Query: 181 LTLLMISHNLEDSMQIATRFIVIAGGQI 208 L+++++S + + + ++ R +V+ G+I Sbjct: 446 LSIILVSSEMPEVLGMSDRILVMHEGRI 473 >gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional. Length = 1466 Score = 58.9 bits (142), Expect = 1e-09 Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 27/155 (17%) Query: 73 LSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQ--- 129 SI+ QE LF+ +++++NI G R D VK+ + +++F P++ Sbjct: 1298 FSIVSQEPMLFN-MSIYENIKFGKEDATRED------VKRACKFAAIDEFIESLPNKYDT 1350 Query: 130 --------MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQL 181 +SGGQ+QR+A+AR L+R+ ILLLDE + D I + + D+ Sbjct: 1351 NVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADK 1410 Query: 182 TLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDR 216 T++ I+H +IA+ + +IV +PDR Sbjct: 1411 TIITIAH------RIAS---IKRSDKIVVFNNPDR 1436 Score = 47.3 bits (112), Expect = 3e-06 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 11/106 (10%) Query: 108 AQVKQMLEKVFLEDFFNRFP-----------SQMSGGQRQRVALARCLIRQKPILLLDEP 156 ++V + +KV + DF + P S++SGGQ+QR+++AR +IR IL+LDE Sbjct: 547 SEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEA 606 Query: 157 FAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIV 202 + D + + + + ++I+H L T F++ Sbjct: 607 TSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVL 652 Score = 33.1 bits (75), Expect = 0.058 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%) Query: 2 IKLDHLIYCYDNLK-----MQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI 56 I+ ++ + YD K +F + + + +G SG GKST+L L+ PT G I Sbjct: 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442 Query: 57 FLN 59 +N Sbjct: 443 IIN 445 >gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional. Length = 718 Score = 58.3 bits (141), Expect = 1e-09 Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 48/187 (25%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLN--------GQNHTRS-SPS 69 +F ++ RI ++GP+G GKST+L L++G P+ G++F + Q+H S Sbjct: 529 NFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLS 588 Query: 70 KRPLSILFQ------ENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFF 123 PL + + E L +HL + G+ NL L + M Sbjct: 589 SNPLLYMMRCFPGVPEQKLRAHLG-----SFGVTGNLAL--------QPMY--------- 626 Query: 124 NRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFD-PALRHEILGLLKQVCDERQLT 182 +SGGQ+ RVA A+ ++ ILLLDEP D A+ I GL+ Q Sbjct: 627 -----TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVL-----FQGG 676 Query: 183 LLMISHN 189 +LM+SH+ Sbjct: 677 VLMVSHD 683 Score = 43.3 bits (102), Expect = 5e-05 Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 15/104 (14%) Query: 118 FLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCD 177 F + + SGG R R+ALAR L + +LLLDEP D H +L L Sbjct: 333 FTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD---LHAVLWL------ 383 Query: 178 ERQL-----TLLMISHNLEDSMQIATRFIVIAGGQIV-YDGDPD 215 E L T +++SH E + T + + G ++V Y GD D Sbjct: 384 ETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYD 427 >gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. Length = 1490 Score = 58.0 bits (140), Expect = 2e-09 Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 47/213 (22%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQE 79 F V +R+ +LG +G+GKSTLLS + T G I ++G + S+ Q Sbjct: 1240 FSVEGGQRVGLLGRTGSGKSTLLSALLRL-LSTEGEIQIDGVSWN---------SVTLQT 1289 Query: 80 NNLFSHLTVWQNIALGIAPN----------LRLDHYQH---AQVKQMLEKVFLEDFFNRF 126 W+ A G+ P LD Y+ ++ ++ E+V L+ +F Sbjct: 1290 ---------WRK-AFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQF 1339 Query: 127 PSQM-----------SGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQV 175 P ++ S G +Q + LAR ++ + ILLLDEP A DP I LKQ Sbjct: 1340 PDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQS 1399 Query: 176 CDERQLTLLMISHNLEDSMQIATRFIVIAGGQI 208 T+++ H +E ++ +F+VI G + Sbjct: 1400 FSN--CTVILSEHRVEALLE-CQQFLVIEGSSV 1429 Score = 56.1 bits (135), Expect = 8e-09 Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 38/179 (21%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQE 79 F++ K + + + G +G+GKS+LL ++ G P+ G I +G R S S + I+ Sbjct: 447 FKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----RISFSPQTSWIMPG- 501 Query: 80 NNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQ---------- 129 T+ NI G L D Y++ V + + LE+ FP + Sbjct: 502 -------TIKDNIIFG----LSYDEYRYTSVIKACQ---LEEDIALFPEKDKTVLGEGGI 547 Query: 130 -MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMIS 187 +SGGQR R++LAR + + + LLD PF D EI E L LM + Sbjct: 548 TLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIF--------ESCLCKLMSN 598 >gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein. Length = 1394 Score = 57.4 bits (139), Expect = 3e-09 Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 19/214 (8%) Query: 22 VNKAERIVILGPSGAGKSTLLSLMA----GFKYPTRGSIFLNGQNHTRSSPSKRPLSILF 77 + E V+LG G+G STLL +A GF G I +G R + Sbjct: 84 IKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYN 143 Query: 78 QENNL-FSHLTVWQNIALGIA---PNLRLDHYQHAQVKQMLEKVFLEDFF---------- 123 E ++ F HLTV + + P R D + + + V++ + Sbjct: 144 AETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVG 203 Query: 124 NRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183 N F +SGG+R+RV++A + I D D A E + LK + T Sbjct: 204 NDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTP 263 Query: 184 LM-ISHNLEDSMQIATRFIVIAGGQIVYDGDPDR 216 L+ I +D+ ++ + IV+ G +Y G D+ Sbjct: 264 LVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADK 297 Score = 37.8 bits (88), Expect = 0.002 Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 18/198 (9%) Query: 30 ILGPSGAGKSTLLSLMAGFK---YPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHL 86 ++G SGAGK+TLL+++A T G +NG S +R + + Q++ Sbjct: 794 LMGASGAGKTTLLNVLAERVTTGVITGGDRLVNG--RPLDSSFQRSIGYVQQQDLHLPTS 851 Query: 87 TVWQNIALGIAPNLRL-----DHYQHAQVKQMLEKVFLEDFFNRFPSQMSGG----QRQR 137 TV + +L + LR + V+++++ + +E + + G QR+R Sbjct: 852 TVRE--SLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKR 909 Query: 138 VALARCLI-RQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQI 196 + + L+ + K +L LDEP + D I L++++ D Q L I + Sbjct: 910 LTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEE 969 Query: 197 ATRFIVIA-GGQIVYDGD 213 R +++ GGQ VY GD Sbjct: 970 FDRLLLLQKGGQTVYFGD 987 >gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 57.4 bits (139), Expect = 3e-09 Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 42/208 (20%) Query: 18 FDFQVNKAERIVI--LGPSGAGKSTLL-------SLMAGFKYPTRGSIFLNGQNHTRSSP 68 FD ++ E+ V +GPSG GKST L + G + G I L+G++ Sbjct: 36 FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR--VTGKITLDGEDIYDPRL 93 Query: 69 SKRPL----SILFQENNLFSHLTVWQNIALG-----IAPN-LRLDHYQHAQVKQMLEKVF 118 L ++FQ+ N F ++++N+A G +A + LD V+ L K Sbjct: 94 DVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEI----VETSLRKAG 148 Query: 119 L----EDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDP---ALRHEILGL 171 L +D + + +SGGQ+QR+ +AR + ++L+DEP + DP A E++ Sbjct: 149 LWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDE 208 Query: 172 LKQVCDERQLTLLMISHNLEDSMQIATR 199 L+Q T+++++H SMQ A R Sbjct: 209 LRQ-----NYTIVIVTH----SMQQAAR 227 >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional. Length = 258 Score = 56.9 bits (137), Expect = 4e-09 Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 20/193 (10%) Query: 20 FQVNKAERIVILGPSGAGKSTL---LSLMAGFKYPTR--GSIFLNGQNHTRSSPS----K 70 Q+ K ++GPSG GKST L+ M R G + + G++ + Sbjct: 33 MQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELR 92 Query: 71 RPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQ--VKQMLEKVFL-EDFFNRFP 127 + + ++FQ+ N F ++++ N+A G P + + + V+ L L ++ +R Sbjct: 93 KNVGMVFQKPNPFP-MSIYDNVAYG--PRIHGANKKDLDGVVENALRSAALWDETSDRLK 149 Query: 128 S---QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLL 184 S +SGGQ+QR+ +AR L + I+L DEP + DP I L+ + ++ T++ Sbjct: 150 SPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL--KKDYTIV 207 Query: 185 MISHNLEDSMQIA 197 +++HN++ + +I+ Sbjct: 208 IVTHNMQQAARIS 220 >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional. Length = 330 Score = 56.7 bits (137), Expect = 5e-09 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 104 HYQHAQVKQMLEKVFLED---FFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVF 160 ++ + ++L +V ++D FP +++ G+ Q+V +A L Q +L+ DEP Sbjct: 130 GWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAM 189 Query: 161 DPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219 +P + +I LL ++ T+L+ISH+L+ Q A + V+ GQ V L+ Sbjct: 190 EPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVT 248 >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional. Length = 549 Score = 55.3 bits (133), Expect = 1e-08 Identities = 49/199 (24%), Positives = 93/199 (46%), Gaps = 22/199 (11%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQE 79 F+V + E + I+G +G+GKSTL +L+AG P +G++ + G +++ Sbjct: 45 FEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS-----------AALIAIS 93 Query: 80 NNLFSHLTVWQNIAL-GIAPNLRLDHYQHAQVKQMLEKVF----LEDFFNRFPSQMSGGQ 134 + L LT +NI L G+ L + ++K+++ ++ + F + S G Sbjct: 94 SGLNGQLTGIENIELKGLMMGLTKE-----KIKEIIPEIIEFADIGKFIYQPVKTYSSGM 148 Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSM 194 + R+ A + IL++DE +V D + L + + E+ T+ ISH+L Sbjct: 149 KSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEF-KEQGKTIFFISHSLSQVK 207 Query: 195 QIATRFIVIAGGQIVYDGD 213 T+ + + GQ+ GD Sbjct: 208 SFCTKALWLHYGQVKEYGD 226 >gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 Score = 54.7 bits (131), Expect = 2e-08 Identities = 36/183 (19%), Positives = 64/183 (34%), Gaps = 53/183 (28%) Query: 26 ERIVILGPSGAGKSTLLSLMAGF-KYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFS 84 E I+I+GP G+GK+TL +A P G I+++G++ + Sbjct: 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQL------------- 49 Query: 85 HLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQRVALARCL 144 L + SG R R+ALA Sbjct: 50 ----------------------------------LLIIVGGKKASGSGELRLRLALALAR 75 Query: 145 IRQKPILLLDEPFAVFDPALRHEIL-----GLLKQVCDERQLTLLMISHNLEDSMQIATR 199 + +L+LDE ++ D +L LL + E+ LT+++ +++ +D R Sbjct: 76 KLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLR 135 Query: 200 FIV 202 Sbjct: 136 RRF 138 >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional. Length = 200 Score = 54.6 bits (131), Expect = 2e-08 Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 14/153 (9%) Query: 14 LKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS-KRP 72 L Q F + + + G +GAGK+TLL L+AG P +G I Q+ + + ++ Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75 Query: 73 LSILFQENNLFSHLTVWQNIALGI---APNLRLDHYQHAQVKQMLEKVFLEDFFNRFP-S 128 L + + + +LT+ +N I + + L ++F + +P Sbjct: 76 LCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITE---------LCRLFSLEHLIDYPCG 126 Query: 129 QMSGGQRQRVALARCLIRQKPILLLDEPFAVFD 161 +S GQ+++VAL R + + + LLDEP D Sbjct: 127 LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159 >gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional. Length = 530 Score = 53.7 bits (130), Expect = 4e-08 Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 39/213 (18%) Query: 11 YDNLKM--QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLN--------G 60 +DN + + + ER+ I+G +G GK+TLL + G P G++ + Sbjct: 329 FDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYA 388 Query: 61 QNHTRSSPSKRPLSILFQEN-NLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEK-VF 118 Q+H F+ + LF ++ W R + V+ L + +F Sbjct: 389 QDHAYD----------FENDLTLFDWMSQW-----------RQEGDDEQAVRGTLGRLLF 427 Query: 119 LEDFFNRFPSQMSGGQRQRVALARCLIRQKP-ILLLDEPFAVFDPALRHEILGLLKQVCD 177 +D + +SGG++ R+ + L+ QKP +L++DEP D E + L + Sbjct: 428 SQDDIKKSVKVLSGGEKGRMLFGK-LMMQKPNVLVMDEPTNHMD----MESIESLNMALE 482 Query: 178 ERQLTLLMISHNLEDSMQIATRFIVIAGGQIVY 210 + + TL+ +SH+ E +ATR I I +V Sbjct: 483 KYEGTLIFVSHDREFVSSLATRIIEITPDGVVD 515 Score = 34.9 bits (81), Expect = 0.016 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%) Query: 128 SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMIS 187 S+++ G + RV LA+ L ILLLDEP D + I L+ V +ER T+++IS Sbjct: 154 SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDI---NTI-RWLEDVLNERNSTMIIIS 209 Query: 188 H 188 H Sbjct: 210 H 210 >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional. Length = 491 Score = 53.6 bits (129), Expect = 5e-08 Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 17/191 (8%) Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPL----SILFQENNLFSH 85 ++G +GAGKSTLL + G GSI G+ S SK L S++ QE NL Sbjct: 29 LMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS-SKEALENGISMVHQELNLVLQ 87 Query: 86 LTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP----SQMSGGQRQRVALA 141 +V N+ LG P + ++ + + +F E + P + +S Q Q + +A Sbjct: 88 RSVMDNMWLGRYP-TKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIA 146 Query: 142 RCLIRQKPILLLDEPFAVF-DPALRH--EILGLLKQVCDERQLTLLMISHNLEDSMQIAT 198 + I+++DEP + + + H I+ LK ER ++ ISH +E+ Q+ Sbjct: 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK----ERGCGIVYISHKMEEIFQLCD 202 Query: 199 RFIVIAGGQIV 209 ++ GQ + Sbjct: 203 EITILRDGQWI 213 Score = 52.0 bits (125), Expect = 1e-07 Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 38/214 (17%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ---NHT------------ 64 F ++K E + I G GA ++ ++ + G + + G+I L+G+ NH Sbjct: 269 FDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALV 328 Query: 65 ----RSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLE 120 RS+ L I F N+L S++ ++N +G+ N R+ + M K Sbjct: 329 TEERRSTGIYAYLDIGF--NSLISNIRNYKN-KVGLLDNSRMKSDTQWVIDSMRVKT--- 382 Query: 121 DFFNRFPSQ------MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQ 174 P +SGG +Q+V + R L+ Q IL+LDEP D + EI L+ + Sbjct: 383 ------PGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAE 436 Query: 175 VCDERQLTLLMISHNLEDSMQIATRFIVIAGGQI 208 + + + +++IS + + + I R +V++ G + Sbjct: 437 LAKKDK-GIIIISSEMPELLGITDRILVMSNGLV 469 >gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei. Length = 659 Score = 52.4 bits (126), Expect = 9e-08 Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 39/207 (18%) Query: 1 MIKLDHL---IYCYDNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIF 57 IK +++ D L F+V ++I GP+G GKS+L ++ +P G Sbjct: 451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGEL-WPVYGG-- 507 Query: 58 LNGQNHTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDH----YQHAQVKQM 113 + P+K L + Q + T+ I I P+ D ++Q+ Sbjct: 508 ------RLTKPAKGKLFYVPQR-PYMTLGTLRDQI---IYPDSSEDMKRRGLSDKDLEQI 557 Query: 114 LEKVFLEDFFNR---------FPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFD--- 161 L+ V L R + +SGG++QR+A+AR L KP FA+ D Sbjct: 558 LDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMAR-LFYHKPQ------FAILDECT 610 Query: 162 PALRHEILGLLKQVCDERQLTLLMISH 188 A+ ++ G + ++C E +TL +SH Sbjct: 611 SAVSVDVEGYMYRLCREFGITLFSVSH 637 >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional. Length = 264 Score = 52.5 bits (126), Expect = 1e-07 Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 20/203 (9%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQE 79 + + + I ++G +G+GKSTL +++ G PT G + NG+ +S++ Sbjct: 45 LKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-----------VSVIAIS 93 Query: 80 NNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVF----LEDFFNRFPSQMSGGQR 135 L LT +NI + ++ ++K M K+ L +F + + S G R Sbjct: 94 AGLSGQLTGIENIEF----KMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMR 149 Query: 136 QRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQ 195 ++ + + IL++DE +V D + L + + E+ T+ +SHNL Q Sbjct: 150 AKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEF-KEQNKTIFFVSHNLGQVRQ 208 Query: 196 IATRFIVIAGGQIVYDGDPDRLM 218 T+ I GG++ G+ D ++ Sbjct: 209 FCTKIAWIEGGKLKDYGELDDVL 231 >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional. Length = 330 Score = 52.0 bits (125), Expect = 1e-07 Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 29/194 (14%) Query: 19 DFQVNKAERIVILGPSGAGKS-TLLSLMAGFKYPTR--GSIFLNGQ----------NHTR 65 +F + E + I+G SG+GKS T +LM R GS NG+ N R Sbjct: 36 NFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLR 95 Query: 66 SSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRL-DHYQHAQ-----VKQMLEKVFL 119 + +S++FQ+ + L + + + L L A+ V+ ML+ V + Sbjct: 96 A----EQISMIFQDP--MTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVR-MLDAVKM 148 Query: 120 EDFFNR---FPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVC 176 + R +P + SGG RQRV +A L+ + +L+ DEP D ++ +I+ LL ++ Sbjct: 149 PEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELK 208 Query: 177 DERQLTLLMISHNL 190 E ++MI+H+L Sbjct: 209 REFNTAIIMITHDL 222 >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional. Length = 490 Score = 47.7 bits (114), Expect = 3e-06 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Query: 130 MSGGQRQRVAL-ARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISH 188 +S GQ QR+AL R L++ +L+LDEP DP R + + + E + LL +SH Sbjct: 402 LSWGQ-QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSH 460 Query: 189 NLEDSMQ-IATRFIVIAGGQI 208 + ED+ I R + G I Sbjct: 461 HAEDAPACITHRLEFVPDGDI 481 Score = 42.7 bits (101), Expect = 9e-05 Identities = 49/230 (21%), Positives = 94/230 (40%), Gaps = 42/230 (18%) Query: 11 YDNLKMQFD-FQVNKAERIVILGPSGAGKSTL-------LSLMAG-----FKYPTRGSIF 57 D +Q +N + +G +G+GKS L L L++G F + TR S F Sbjct: 14 SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLS-F 72 Query: 58 LNGQNHTRSSPSKRPLSILFQENN--LFSH------LTVWQNIALGIAPNLRLDHYQHAQ 109 Q + +S +Q NN + S T + I D + Sbjct: 73 EQLQ---------KLVSDEWQRNNTDMLSPGEDDTGRTTAEII---------QDEVKDPA 114 Query: 110 VKQMLEKVF-LEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEI 168 + L + F + +R +S G+ ++ L + L+ + +L+LDEPF D A R ++ Sbjct: 115 RCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQL 174 Query: 169 LGLLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLM 218 LL + + +TL+++ + ++ V+A + G+ + ++ Sbjct: 175 AELLASL-HQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 Score = 41.2 bits (97), Expect = 2e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAG 47 +QVN E I+GP+GAGKSTLLSL+ G Sbjct: 278 NLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308 >gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional. Length = 1560 Score = 45.5 bits (108), Expect = 1e-05 Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 40/222 (18%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS------KRPL 73 F++ E++ I+G +G+GKSTLL G I +NG R + +R Sbjct: 1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNG----REIGAYGLRELRRQF 1386 Query: 74 SILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSG- 132 S++ Q+ LF TV QN+ P L A+V LE V L + R S+ G Sbjct: 1387 SMIPQDPVLFDG-TVRQNVD----PFLEA---SSAEVWAALELVGLRE---RVASESEGI 1435 Query: 133 -------------GQRQRVALARCLI-RQKPILLLDEPFAVFDPALRHEILGLLKQVCDE 178 GQRQ + +AR L+ + +L+DE A DPAL +I + Sbjct: 1436 DSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS- 1494 Query: 179 RQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRL-MN 219 T++ I+H L Q + IV+ G + G P L MN Sbjct: 1495 -AYTVITIAHRLHTVAQY-DKIIVMDHGAVAEMGSPRELVMN 1534 Score = 40.9 bits (96), Expect = 3e-04 Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 42/206 (20%) Query: 29 VILGPSGAGKSTLL-SLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHLT 87 V+LG +G+GKSTLL SL++ F+ + G ++ ++R ++ + Q+ + + T Sbjct: 690 VVLGATGSGKSTLLQSLLSQFEI-SEGRVW-----------AERSIAYVPQQAWIMN-AT 736 Query: 88 VWQNI-------ALGIAPNLRLDHYQHAQVKQM---LEKVFLEDFFNRFPSQMSGGQRQR 137 V NI A +A +R+ + A + Q+ LE E N +SGGQ+ R Sbjct: 737 VRGNILFFDEEDAARLADAVRVSQLE-ADLAQLGGGLETEIGEKGVN-----LSGGQKAR 790 Query: 138 VALARCLIRQKPILLLDEPFAVFDPALRHEI-----LGLLKQVCDERQLTLLMISHNLED 192 V+LAR + + + LLD+P + D + + LG L T ++ +H + Sbjct: 791 VSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL------AGKTRVLATHQVH- 843 Query: 193 SMQIATRFIVIAGGQIVYDGDPDRLM 218 + A + + G++ + G M Sbjct: 844 VVPRADYVVALGDGRVEFSGSSADFM 869 >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional. Length = 195 Score = 43.7 bits (103), Expect = 4e-05 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 9/127 (7%) Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHLTVW 89 I G +G GKS+LL ++AG P+ G+I+ +N ++ +K + + L +TV+ Sbjct: 31 IKGANGCGKSSLLRMIAGIMQPSSGNIYY--KNCNINNIAKPYCTYIGHNLGLKLEMTVF 88 Query: 90 QNIALGIAPNLRLDHYQHAQVKQMLEKVF-LEDFFNRFPSQMSGGQRQRVALARCLIRQK 148 +N+ + Y A+ F L D + +S G ++ VA+AR + Q Sbjct: 89 ENLKFWS------EIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQS 142 Query: 149 PILLLDE 155 + LLDE Sbjct: 143 DLWLLDE 149 >gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional. Length = 1809 Score = 41.4 bits (97), Expect = 2e-04 Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 10/104 (9%) Query: 124 NRFPSQMSGGQRQRVALARCLIRQ--KPILLLDEPFAVFDPALRHEILGLLKQVCDERQL 181 R + +SGG+++R ALA+ L + +LDEP P H+++ ++K++ D+ Sbjct: 471 ERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGN- 529 Query: 182 TLLMISHNLEDSMQIATRFIVIA------GGQIVYDGDPDRLMN 219 T+L++ H+ E + +A R I I GG+++++G P + Sbjct: 530 TVLLVEHD-EQMISLADRIIDIGPGAGIFGGEVLFNGSPREFLA 572 Score = 27.1 bits (60), Expect = 4.2 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 4/66 (6%) Query: 128 SQMSGGQRQRVALARCLI--RQKPIL-LLDEPFAVFDPALRHEILGLLKQVCDERQLTLL 184 S +SGG+ QR+ LA L+ +KP L +LDEP ++ +L+ + + T++ Sbjct: 808 SSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGH-TVV 866 Query: 185 MISHNL 190 +I HN+ Sbjct: 867 IIEHNM 872 >gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional. Length = 638 Score = 40.5 bits (95), Expect = 3e-04 Identities = 45/141 (31%), Positives = 64/141 (45%), Gaps = 34/141 (24%) Query: 27 RIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHL 86 RI +LG +GAGKSTL+ L+AG P G I L + ++ L L + + HL Sbjct: 340 RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL-AKGIKLGYFAQHQLEFLRADESPLQHL 398 Query: 87 TVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQ----------MSGGQRQ 136 +AP Q LE+ L D+ F Q SGG++ Sbjct: 399 A-------RLAP-------------QELEQK-LRDYLGGFGFQGDKVTEETRRFSGGEKA 437 Query: 137 RVALARCLIRQKP-ILLLDEP 156 R+ LA ++ Q+P +LLLDEP Sbjct: 438 RLVLA-LIVWQRPNLLLLDEP 457 Score = 37.5 bits (87), Expect = 0.003 Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 28/158 (17%) Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ------NHTRSSPSKRPLSI 75 +N +++ ++G +G GKSTLL+L+ GS G N + + L Sbjct: 24 INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEY 83 Query: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKV-----------------F 118 + + + L + A N R D + A + L+ + F Sbjct: 84 VIDGDREYRQLEAQLHDA-----NERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGF 138 Query: 119 LEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEP 156 + R S SGG R R+ LA+ LI + +LLLDEP Sbjct: 139 SNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176 >gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional. Length = 1470 Score = 39.1 bits (91), Expect = 0.001 Identities = 52/234 (22%), Positives = 95/234 (40%), Gaps = 46/234 (19%) Query: 29 VILGPSGAGKSTLLSLMAGFKYPT---RGSIFLNGQNHTRSSPSKRPLSILFQENNL-FS 84 ++LGP +GK+TLL +AG P+ G I NG P K S +N++ Sbjct: 195 LLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKT--SAYISQNDVHVG 252 Query: 85 HLTVWQNIAL------------------------GIAPNLRLDHYQHAQVKQMLEKVFLE 120 +TV + + GI P +D + A + ++ + Sbjct: 253 VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLIT 312 Query: 121 DFFNRF-----------PSQM----SGGQRQRVALARCLIRQKPILLLDEPFAVFDPALR 165 D+ + +M SGGQ++RV ++ L +DE D + Sbjct: 313 DYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 372 Query: 166 HEILGLLKQVCDERQLTLLM-ISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLM 218 ++I+ L+Q+ + T+LM + ++ + I+++ GQIVY G D ++ Sbjct: 373 YQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHIL 426 Score = 34.4 bits (79), Expect = 0.027 Identities = 51/202 (25%), Positives = 97/202 (48%), Gaps = 28/202 (13%) Query: 30 ILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRP----LSILFQENNLFS- 84 ++G SGAGK+TL+ ++AG K T G ++ G P K+ +S ++N++ S Sbjct: 911 LMGVSGAGKTTLMDVLAGRK--TGG--YIEGDIRISGFPKKQETFARISGYCEQNDIHSP 966 Query: 85 HLTVWQNIALGIAPNLRLDHYQHAQ-----VKQMLEKVFLEDFFNR---FP--SQMSGGQ 134 +TV + +L + LRL + V +++E V L++ + P + +S Q Sbjct: 967 QVTVRE--SLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQ 1024 Query: 135 RQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSM 194 R+R+ +A L+ I+ +DEP + D ++ ++ D + + I + S+ Sbjct: 1025 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---QPSI 1081 Query: 195 QIATRF----IVIAGGQIVYDG 212 I F ++ GGQ++Y G Sbjct: 1082 DIFEAFDELLLMKRGGQVIYSG 1103 >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed. Length = 248 Score = 38.2 bits (89), Expect = 0.002 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFK-YP-TRGSIFLNGQNHTRSSPSKR 71 + +V E I+GP+G+GKSTL + +AG + Y T G++ G++ SP R Sbjct: 21 NLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDR 75 >gnl|CDD|184357 PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional. Length = 811 Score = 36.4 bits (85), Expect = 0.006 Identities = 12/17 (70%), Positives = 16/17 (94%) Query: 30 ILGPSGAGKSTLLSLMA 46 ++GP+GAGKS LL+LMA Sbjct: 446 VVGPTGAGKSVLLALMA 462 >gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 924 Score = 36.1 bits (84), Expect = 0.009 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 21/102 (20%) Query: 130 MSGGQRQRVALARCLIRQ---KPILLLDEP-----FAVFDPALRHEILGLLKQVCDERQL 181 +SGG+ QR+ LA+ L ++ + + +LDEP F D E+L L + Sbjct: 829 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFD--DIKKLLEVLQRLVDQGN---- 882 Query: 182 TLLMISHNLEDSMQIATRFIVI------AGGQIVYDGDPDRL 217 T+++I HNL D ++ A I + GG IV G P+ + Sbjct: 883 TVVVIEHNL-DVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 Score = 35.8 bits (83), Expect = 0.011 Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 14/106 (13%) Query: 124 NRFPSQMSGGQRQRVALARCLIRQ--KPILLLDEPFAVFDPALRHEILGLLKQVCDERQL 181 +R +SGG+ QR+ LA + + +LDEP ++ LK++ R L Sbjct: 482 SRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRL---RDL 538 Query: 182 --TLLMISHNLEDSMQIATRFIVIA------GGQIVYDGDPDRLMN 219 T++++ H+ E++++ A I I GG++V G P+ ++ Sbjct: 539 GNTVIVVEHD-EETIRAADYVIDIGPGAGIHGGEVVASGTPEEILA 583 Score = 29.6 bits (67), Expect = 0.79 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%) Query: 13 NLKMQFDFQVNKAERIVILGPSGAGKSTL 41 NLK D ++ + + +VI G SG+GKS+L Sbjct: 11 NLK-NIDVEIPRDKLVVITGLSGSGKSSL 38 Score = 27.7 bits (62), Expect = 2.7 Identities = 9/14 (64%), Positives = 11/14 (78%) Query: 29 VILGPSGAGKSTLL 42 I G SG+GKSTL+ Sbjct: 637 CITGVSGSGKSTLI 650 >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional. Length = 895 Score = 34.9 bits (80), Expect = 0.018 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 12/72 (16%) Query: 130 MSGGQRQ------RVALARCLIRQKPILLLDEPFAVFDPALRHEILGL----LKQVCDER 179 +SGG++ RVA+A+ L K +L++DEP A D R + + LK D Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIP 861 Query: 180 QLTLLMISHNLE 191 Q ++MISH+ E Sbjct: 862 Q--VIMISHHRE 871 >gnl|CDD|168339 PRK06002, fliI, flagellum-specific ATP synthase; Validated. Length = 450 Score = 34.2 bits (79), Expect = 0.028 Identities = 12/23 (52%), Positives = 16/23 (69%) Query: 25 AERIVILGPSGAGKSTLLSLMAG 47 +RI I SG GKSTLL+++A Sbjct: 165 GQRIGIFAGSGVGKSTLLAMLAR 187 >gnl|CDD|178371 PLN02772, PLN02772, guanylate kinase. Length = 398 Score = 34.0 bits (78), Expect = 0.031 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 6/42 (14%) Query: 28 IVILGPSGAGKSTLLS-LMAGFKYPTRGSIFLNGQNHTRSSP 68 IVI GPSG GK TL+S LM F S+F +HT +P Sbjct: 138 IVISGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP 174 >gnl|CDD|132307 TIGR03263, guanyl_kin, guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. Length = 180 Score = 34.0 bits (79), Expect = 0.032 Identities = 12/18 (66%), Positives = 14/18 (77%) Query: 28 IVILGPSGAGKSTLLSLM 45 IVI GPSG GKSTL+ + Sbjct: 4 IVISGPSGVGKSTLVKAL 21 >gnl|CDD|183313 PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional. Length = 345 Score = 34.0 bits (79), Expect = 0.033 Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 51/154 (33%) Query: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPT---------RGSIFLNGQNHTRSS 67 + + +V+ G +G+GK+ LL +A RGS F G+ Sbjct: 133 TLEEAPAQFPLVVLGGNTGSGKTELLQALANAGAQVLDLEGLANHRGSSF--GRLGG-PQ 189 Query: 68 PSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFP 127 PS F EN L AL L+LD + + +ED Sbjct: 190 PS----QKDF-ENLLA--------EAL-----LKLDPARP---------IVVED-----E 217 Query: 128 SQMSGGQRQRVALARCL---IRQKPILLLDEPFA 158 S+ G RV L L ++Q PI++++ P Sbjct: 218 SRRIG----RVHLPEALYEAMQQAPIVVVEAPLE 247 >gnl|CDD|172357 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional. Length = 818 Score = 33.7 bits (77), Expect = 0.044 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%) Query: 29 VILGPSGAGKSTLLSLMAG-FKYPTRGSIF 57 +I GP+G+GKSTLL+L+A F+ IF Sbjct: 460 LIFGPTGSGKSTLLALIAAQFRRYAGAQIF 489 >gnl|CDD|149505 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 118 Score = 33.6 bits (77), Expect = 0.047 Identities = 11/26 (42%), Positives = 20/26 (76%) Query: 27 RIVILGPSGAGKSTLLSLMAGFKYPT 52 ++V++G G+GKS+LLS + G ++P Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPP 26 >gnl|CDD|179771 PRK04182, PRK04182, cytidylate kinase; Provisional. Length = 180 Score = 33.2 bits (77), Expect = 0.053 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%) Query: 27 RIVILGPSGAGKSTLLSLMA---GFKYPTRGSIF 57 I I GP G+GK+T+ L+A G K+ + G IF Sbjct: 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIF 35 >gnl|CDD|162115 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation). Length = 785 Score = 33.1 bits (76), Expect = 0.058 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 5/38 (13%) Query: 18 FDFQVNKAERI---VILGPSGAGKSTLLS--LMAGFKY 50 F+F V A+ + +I GP+G+GK+TLL+ L KY Sbjct: 424 FNFHVRDAKVLGHTLIFGPTGSGKTTLLNFLLAQMQKY 461 >gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed. Length = 298 Score = 33.3 bits (77), Expect = 0.061 Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 29 VILGPSGAGKSTLLSLMAG 47 V+ G SG GKSTLL+ +A Sbjct: 168 VLAGQSGVGKSTLLNALAP 186 >gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed. Length = 356 Score = 33.0 bits (76), Expect = 0.061 Identities = 9/14 (64%), Positives = 11/14 (78%) Query: 28 IVILGPSGAGKSTL 41 + +LG SG GKSTL Sbjct: 198 VALLGSSGVGKSTL 211 >gnl|CDD|178968 PRK00300, gmk, guanylate kinase; Provisional. Length = 205 Score = 32.8 bits (76), Expect = 0.073 Identities = 12/14 (85%), Positives = 13/14 (92%) Query: 28 IVILGPSGAGKSTL 41 IV+ GPSGAGKSTL Sbjct: 8 IVLSGPSGAGKSTL 21 >gnl|CDD|161778 TIGR00231, small_GTP, small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. Length = 161 Score = 32.7 bits (75), Expect = 0.087 Identities = 13/26 (50%), Positives = 18/26 (69%) Query: 27 RIVILGPSGAGKSTLLSLMAGFKYPT 52 +IVI+G GKSTLL+ + G K+ T Sbjct: 3 KIVIVGDPNVGKSTLLNRLLGNKFIT 28 >gnl|CDD|184809 PRK14738, gmk, guanylate kinase; Provisional. Length = 206 Score = 32.8 bits (75), Expect = 0.088 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%) Query: 23 NKAER---IVILGPSGAGKSTLLSLMAGFKYP 51 NK + +VI GPSG GK +L+ M K P Sbjct: 8 NKPAKPLLVVISGPSGVGKDAVLARMRERKLP 39 >gnl|CDD|178800 PRK00023, cmk, cytidylate kinase; Provisional. Length = 225 Score = 32.4 bits (75), Expect = 0.11 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%) Query: 28 IVILGPSGAGKSTLLSLMA---GFKY 50 I I GP+G+GK T+ ++A GF Y Sbjct: 7 IAIDGPAGSGKGTVAKILAKKLGFHY 32 >gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors. Length = 217 Score = 32.0 bits (73), Expect = 0.13 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%) Query: 28 IVILGPSGAGKSTLLSLMA---GFKYPTRGSIF 57 I I GPSGAGKST+ +A G+ Y G+++ Sbjct: 5 IAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMY 37 >gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated. Length = 438 Score = 32.0 bits (73), Expect = 0.14 Identities = 12/27 (44%), Positives = 17/27 (62%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMA 46 V K +R+ I SG GKSTL+ ++A Sbjct: 153 LTVGKGQRVGIFAGSGVGKSTLMGMIA 179 >gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. Length = 418 Score = 31.9 bits (73), Expect = 0.15 Identities = 12/24 (50%), Positives = 17/24 (70%) Query: 24 KAERIVILGPSGAGKSTLLSLMAG 47 + +R+ I SG GKSTLLS++A Sbjct: 139 RGQRLGIFAGSGVGKSTLLSMLAR 162 >gnl|CDD|181681 PRK09183, PRK09183, transposase/IS protein; Provisional. Length = 259 Score = 31.6 bits (72), Expect = 0.17 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 6/34 (17%) Query: 22 VNKAERIVILGPSGAGKSTL------LSLMAGFK 49 + + E IV+LGPSG GK+ L ++ AG K Sbjct: 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIK 132 >gnl|CDD|184311 PRK13764, PRK13764, ATPase; Provisional. Length = 602 Score = 31.7 bits (73), Expect = 0.17 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI 56 +AE I+I G GAGKST +A F Y G I Sbjct: 254 EERAEGILIAGAPGAGKSTFAQALAEF-YADMGKI 287 >gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed. Length = 229 Score = 31.4 bits (72), Expect = 0.19 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%) Query: 21 QVNKAERIV--ILGPSGAGKSTL 41 Q R + I GP GAGKSTL Sbjct: 27 QAEPQRRTIVGIAGPPGAGKSTL 49 >gnl|CDD|163292 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. Length = 411 Score = 31.3 bits (72), Expect = 0.20 Identities = 13/27 (48%), Positives = 18/27 (66%) Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGF 48 V + +R+ I SG GKSTLL +MA + Sbjct: 134 VGRGQRMGIFAGSGVGKSTLLGMMARY 160 >gnl|CDD|162162 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. Length = 440 Score = 31.2 bits (71), Expect = 0.22 Identities = 14/27 (51%), Positives = 17/27 (62%) Query: 20 FQVNKAERIVILGPSGAGKSTLLSLMA 46 V K +RI I SG GKSTLL ++A Sbjct: 158 LTVGKGQRIGIFAGSGVGKSTLLGMIA 184 >gnl|CDD|178957 PRK00279, adk, adenylate kinase; Reviewed. Length = 215 Score = 31.3 bits (72), Expect = 0.24 Identities = 9/14 (64%), Positives = 12/14 (85%) Query: 27 RIVILGPSGAGKST 40 R+++LGP GAGK T Sbjct: 2 RLILLGPPGAGKGT 15 >gnl|CDD|132536 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. Length = 413 Score = 31.1 bits (71), Expect = 0.25 Identities = 12/25 (48%), Positives = 17/25 (68%) Query: 22 VNKAERIVILGPSGAGKSTLLSLMA 46 + K +R+ I SG GKSTLL ++A Sbjct: 134 IGKGQRVGIFAGSGVGKSTLLGMIA 158 >gnl|CDD|162806 TIGR02322, phosphon_PhnN, phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. Length = 179 Score = 30.4 bits (69), Expect = 0.37 Identities = 11/15 (73%), Positives = 13/15 (86%) Query: 28 IVILGPSGAGKSTLL 42 I ++GPSGAGK TLL Sbjct: 4 IYVVGPSGAGKDTLL 18 >gnl|CDD|180615 PRK06547, PRK06547, hypothetical protein; Provisional. Length = 172 Score = 30.5 bits (69), Expect = 0.37 Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 28 IVILGPSGAGKSTLLSLMAG 47 ++I G SG+GK+TL +A Sbjct: 18 VLIDGRSGSGKTTLAGALAA 37 >gnl|CDD|180730 PRK06851, PRK06851, hypothetical protein; Provisional. Length = 367 Score = 30.3 bits (69), Expect = 0.39 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Query: 18 FDFQVNKAERIVIL-GPSGAGKSTLL 42 +D ++ A RI IL G G GKSTL+ Sbjct: 22 YDSIIDGANRIFILKGGPGTGKSTLM 47 >gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional. Length = 880 Score = 30.4 bits (69), Expect = 0.40 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 11/73 (15%) Query: 13 NLKMQFDFQVNKAERIVILGPSGAGKSTLL-SLMAGFKYPTRGSIFLNG---QNHTRSSP 68 + ++FD +N +I+G +G+GKS++L +++ G Y GS G + TR Sbjct: 16 SSVVEFDDGIN-----LIIGQNGSGKSSILEAILVGL-YWGHGS-KPKGLKKDDFTRIGG 68 Query: 69 SKRPLSILFQENN 81 S + + F++N Sbjct: 69 SGTEIELKFEKNG 81 Score = 27.7 bits (62), Expect = 2.4 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 15/72 (20%) Query: 130 MSGGQRQ------RVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQL-- 181 +SGG+R R+AL+ L P+L+LDEP D R +++ ++ ER L Sbjct: 789 LSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIM-----ERYLRK 843 Query: 182 --TLLMISHNLE 191 ++++SH+ E Sbjct: 844 IPQVIIVSHDEE 855 >gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein VexC; Provisional. Length = 213 Score = 30.4 bits (68), Expect = 0.42 Identities = 15/36 (41%), Positives = 19/36 (52%) Query: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRG 54 DF + E I IL G+GK+TL L+ G P G Sbjct: 7 DFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEG 42 >gnl|CDD|162744 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017. Length = 171 Score = 30.5 bits (69), Expect = 0.43 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%) Query: 28 IVILGPSGAGKSTLLSLMA---GFKYPTRGSIF 57 I I GP G+GK+T+ ++A K + G IF Sbjct: 3 ITISGPPGSGKTTVAKILAEKLSLKLISAGDIF 35 >gnl|CDD|162313 TIGR01351, adk, adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason. Length = 210 Score = 30.3 bits (69), Expect = 0.48 Identities = 10/20 (50%), Positives = 14/20 (70%) Query: 27 RIVILGPSGAGKSTLLSLMA 46 R+V+LGP G+GK T +A Sbjct: 1 RLVLLGPPGSGKGTQAKRIA 20 >gnl|CDD|150847 pfam10236, DAP3, Mitochondrial ribosomal death-associated protein 3. This is a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29). Length = 274 Score = 30.3 bits (69), Expect = 0.49 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Query: 24 KAERIVILGPSGAGKSTLLS-LMA 46 K R V+ G G+GKS LL+ MA Sbjct: 22 KVVRFVLTGERGSGKSVLLAQAMA 45 >gnl|CDD|181101 PRK07742, PRK07742, phosphate butyryltransferase; Validated. Length = 299 Score = 30.1 bits (68), Expect = 0.55 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 12/61 (19%) Query: 177 DERQLTLLMISHNLEDSMQIATRFIVIAGG---------QIVYDGDPDRLMNGLIPESTL 227 ++ ++ ++ H L+ S I I+ A + V +G+ D LM G +P + + Sbjct: 48 NQEKIMGMLQEHGLQTSEHIE---IIHAQSSAEAAELAVKAVRNGEADVLMKGNVPTANI 104 Query: 228 L 228 L Sbjct: 105 L 105 >gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed. Length = 167 Score = 30.0 bits (68), Expect = 0.57 Identities = 8/15 (53%), Positives = 13/15 (86%) Query: 27 RIVILGPSGAGKSTL 41 +I+++G G+GKSTL Sbjct: 3 KIILIGSGGSGKSTL 17 >gnl|CDD|185216 PRK15316, PRK15316, RatA-like protein; Provisional. Length = 2683 Score = 30.0 bits (67), Expect = 0.60 Identities = 12/26 (46%), Positives = 15/26 (57%) Query: 44 LMAGFKYPTRGSIFLNGQNHTRSSPS 69 GF PTRG+I +NG + S PS Sbjct: 776 QTTGFDDPTRGAIEMNGTLYGTSQPS 801 >gnl|CDD|163168 TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene. Length = 311 Score = 29.9 bits (68), Expect = 0.65 Identities = 40/165 (24%), Positives = 54/165 (32%), Gaps = 57/165 (34%) Query: 6 HLIYCYDNLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPT---------RGSI 56 +I + L F IV+ G +G+GK+ LL +A RGS Sbjct: 115 FVIDQLEELPQPFPL-------IVLGGMTGSGKTELLHALANAGAQVLDLEGLANHRGSS 167 Query: 57 FLNGQNHTRSSPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEK 116 F G PS F EN L L RLD + Sbjct: 168 F--GALGLGPQPS----QKRF-ENALAEAL-------------RRLDPGR---------P 198 Query: 117 VFLEDFFNRFPSQMSGGQRQRVALARCLI---RQKPILLLDEPFA 158 +F+ED S+ G RVAL L R P++ L+ Sbjct: 199 IFVED-----ESRRIG----RVALPDALFEAMRAAPLVELEASLE 234 >gnl|CDD|182845 PRK10927, PRK10927, essential cell division protein FtsN; Provisional. Length = 319 Score = 29.6 bits (66), Expect = 0.66 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Query: 127 PSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLT 182 P Q++ QRQ + + +RQ+P L++ P+ P R + L +Q +QL Sbjct: 111 PEQLTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQ---AQQLA 163 >gnl|CDD|162913 TIGR02546, III_secr_ATP, type III secretion apparatus H+-transporting two-sector ATPase. Length = 422 Score = 29.6 bits (67), Expect = 0.67 Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 22 VNKAERIVILGPSGAGKSTLLSLMA 46 + +RI I +G GKSTLL ++A Sbjct: 142 CGEGQRIGIFAGAGVGKSTLLGMIA 166 >gnl|CDD|178887 PRK00131, aroK, shikimate kinase; Reviewed. Length = 175 Score = 29.8 bits (68), Expect = 0.68 Identities = 12/24 (50%), Positives = 16/24 (66%) Query: 23 NKAERIVILGPSGAGKSTLLSLMA 46 K IV++G GAGKST+ L+A Sbjct: 2 LKGPNIVLIGFMGAGKSTIGRLLA 25 >gnl|CDD|184375 PRK13891, PRK13891, conjugal transfer protein TrbE; Provisional. Length = 852 Score = 29.7 bits (67), Expect = 0.71 Identities = 10/18 (55%), Positives = 14/18 (77%) Query: 29 VILGPSGAGKSTLLSLMA 46 + GP+GAGKST L ++A Sbjct: 492 FMFGPTGAGKSTHLGIIA 509 >gnl|CDD|163225 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. Length = 1169 Score = 29.6 bits (67), Expect = 0.71 Identities = 8/14 (57%), Positives = 13/14 (92%) Query: 29 VILGPSGAGKSTLL 42 +++GP G+GK+TLL Sbjct: 115 LVIGPPGSGKTTLL 128 >gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional. Length = 327 Score = 29.6 bits (67), Expect = 0.74 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 3/25 (12%) Query: 21 QVNKAERIVIL---GPSGAGKSTLL 42 + +R V+L G SG GK+T L Sbjct: 1 MTSMPDRPVLLGVAGDSGCGKTTFL 25 >gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. Length = 1179 Score = 29.6 bits (67), Expect = 0.76 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 7/74 (9%) Query: 128 SQMSGGQRQRVALARC----LIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTL 183 S +SGG++ ALA ++ P +LDE A D A LLK+ Q Sbjct: 1088 SLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQ--F 1145 Query: 184 LMISHNLEDSMQIA 197 ++I+HN + +M++A Sbjct: 1146 IVITHN-KGTMEVA 1158 >gnl|CDD|163456 TIGR03744, traC_PFL_4706, conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves. Length = 893 Score = 29.6 bits (67), Expect = 0.79 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 6/36 (16%) Query: 18 FDFQVNKAER-----IVILGPSGAGKSTLLSLMAGF 48 FD +NK +R ++ILGP+GAGKS L+ + Sbjct: 464 FD-PLNKLDRKKNAHLLILGPTGAGKSATLTNLLMQ 498 >gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed. Length = 943 Score = 29.3 bits (67), Expect = 0.80 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 3/29 (10%) Query: 131 SGGQRQRVALARCLIRQ---KPILLLDEP 156 SGG+ QRV LA+ L ++ K + +LDEP Sbjct: 832 SGGEAQRVKLAKELSKRSTGKTLYILDEP 860 Score = 28.9 bits (66), Expect = 1.1 Identities = 8/14 (57%), Positives = 11/14 (78%) Query: 28 IVILGPSGAGKSTL 41 +V G SG+GKS+L Sbjct: 29 VVFTGLSGSGKSSL 42 Score = 27.0 bits (61), Expect = 4.8 Identities = 8/15 (53%), Positives = 11/15 (73%) Query: 28 IVILGPSGAGKSTLL 42 + G SG+GKSTL+ Sbjct: 638 TCVTGVSGSGKSTLI 652 Score = 25.8 bits (58), Expect = 9.4 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 9/45 (20%) Query: 182 TLLMISHNLEDSMQIATRFIV-------IAGGQIVYDGDPDRLMN 219 TL+++ H+ ED+++ A +IV + GG++V G P+ +M Sbjct: 543 TLIVVEHD-EDTIRAAD-YIVDIGPGAGVHGGEVVASGTPEEIMK 585 >gnl|CDD|129833 TIGR00750, lao, LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. Length = 300 Score = 29.4 bits (66), Expect = 0.81 Identities = 12/20 (60%), Positives = 13/20 (65%) Query: 24 KAERIVILGPSGAGKSTLLS 43 A R+ I G GAGKSTLL Sbjct: 33 NAHRVGITGTPGAGKSTLLE 52 >gnl|CDD|178433 PLN02840, PLN02840, tRNA dimethylallyltransferase. Length = 421 Score = 29.4 bits (66), Expect = 0.83 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%) Query: 23 NKAER-IVILGPSGAGKSTL 41 K E+ IVI GP+GAGKS L Sbjct: 18 TKKEKVIVISGPTGAGKSRL 37 >gnl|CDD|128328 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 124 Score = 29.3 bits (66), Expect = 0.86 Identities = 9/34 (26%), Positives = 16/34 (47%) Query: 27 RIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNG 60 ++V +G SG GK + F + ++F G Sbjct: 2 KVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG 35 >gnl|CDD|75717 PRK06731, flhF, flagellar biosynthesis regulator FlhF; Validated. Length = 270 Score = 29.3 bits (65), Expect = 0.86 Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 3/68 (4%) Query: 1 MIKLDHLIYCYDNLKMQFDFQ---VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIF 57 MI + + Y +++ F+ + + + I ++GP+G GK+T L+ MA + + ++ Sbjct: 48 MITEEVIEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG 107 Query: 58 LNGQNHTR 65 +H+R Sbjct: 108 FITTDHSR 115 >gnl|CDD|128386 smart00072, GuKc, Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions. Length = 184 Score = 29.2 bits (66), Expect = 0.88 Identities = 11/18 (61%), Positives = 14/18 (77%) Query: 28 IVILGPSGAGKSTLLSLM 45 IV+ GPSG GK TLL+ + Sbjct: 5 IVLSGPSGVGKGTLLAEL 22 >gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional. Length = 201 Score = 29.1 bits (66), Expect = 0.95 Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 28 IVILGPSGAGKSTLLSLMAGFKYPT 52 IV +G S GKSTL+ + G K Sbjct: 12 IVFVGRSNVGKSTLVRELTGKKVRV 36 >gnl|CDD|183360 PRK11889, flhF, flagellar biosynthesis regulator FlhF; Provisional. Length = 436 Score = 29.3 bits (65), Expect = 1.0 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 1 MIKLDHLI-YCYDNLKMQFDFQ---VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSI 56 MI + +I Y ++++ F+ + + + I ++GP+G GK+T L+ MA + + ++ Sbjct: 213 MITEEEVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTV 272 Query: 57 FLNGQNHTR 65 +H+R Sbjct: 273 GFITTDHSR 281 >gnl|CDD|177394 PHA02562, 46, endonuclease subunit; Provisional. Length = 562 Score = 29.2 bits (66), Expect = 1.1 Identities = 11/24 (45%), Positives = 19/24 (79%) Query: 19 DFQVNKAERIVILGPSGAGKSTLL 42 + Q++K ++ +I G +GAGKST+L Sbjct: 21 EIQLDKVKKTLITGKNGAGKSTML 44 >gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated. Length = 444 Score = 28.9 bits (65), Expect = 1.1 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 6/34 (17%) Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGS 55 V K +R+ + SG GKS LL +M TRG+ Sbjct: 159 VGKGQRMGLFAGSGVGKSVLLGMM------TRGT 186 >gnl|CDD|184315 PRK13768, PRK13768, GTPase; Provisional. Length = 253 Score = 28.7 bits (65), Expect = 1.3 Identities = 7/14 (50%), Positives = 11/14 (78%) Query: 28 IVILGPSGAGKSTL 41 + LG +G+GK+TL Sbjct: 5 VFFLGTAGSGKTTL 18 >gnl|CDD|181583 PRK08927, fliI, flagellum-specific ATP synthase; Validated. Length = 442 Score = 28.8 bits (65), Expect = 1.4 Identities = 11/21 (52%), Positives = 15/21 (71%) Query: 26 ERIVILGPSGAGKSTLLSLMA 46 +R+ I SG GKS LLS++A Sbjct: 159 QRMGIFAGSGVGKSVLLSMLA 179 >gnl|CDD|179996 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed. Length = 449 Score = 28.5 bits (65), Expect = 1.4 Identities = 9/21 (42%), Positives = 14/21 (66%) Query: 27 RIVILGPSGAGKSTLLSLMAG 47 ++VI G GKS+LL+ + G Sbjct: 217 KVVIAGRPNVGKSSLLNALLG 237 >gnl|CDD|181925 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed. Length = 712 Score = 28.6 bits (64), Expect = 1.4 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 3/34 (8%) Query: 27 RIVILGPSGAGKSTL---LSLMAGFKYPTRGSIF 57 + I GP+G GKS++ L+ G+ Y G+++ Sbjct: 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMY 36 >gnl|CDD|172418 PRK13898, PRK13898, type IV secretion system ATPase VirB4; Provisional. Length = 800 Score = 28.6 bits (64), Expect = 1.5 Identities = 11/28 (39%), Positives = 19/28 (67%) Query: 18 FDFQVNKAERIVILGPSGAGKSTLLSLM 45 F+F V +I+GP+GAGK+ L++ + Sbjct: 439 FNFHVRDVGHTLIIGPTGAGKTVLMNFL 466 >gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional. Length = 333 Score = 28.7 bits (64), Expect = 1.5 Identities = 9/14 (64%), Positives = 12/14 (85%) Query: 27 RIVILGPSGAGKST 40 R+++LGP GAGK T Sbjct: 2 RLILLGPPGAGKGT 15 >gnl|CDD|178835 PRK00064, recF, recombination protein F; Reviewed. Length = 361 Score = 28.6 bits (65), Expect = 1.5 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 12/47 (25%) Query: 11 YDNLKMQFDFQVNKAERIVILGPSGAGKSTLL---SLMAGFKYPTRG 54 Y+ L ++ VN V++G +G GK+ LL L+A P R Sbjct: 14 YEELDLELSPGVN-----VLVGENGQGKTNLLEAIYLLA----PGRS 51 Score = 28.2 bits (64), Expect = 1.8 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 6/63 (9%) Query: 149 PILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLM--ISHNLEDSMQIATRFIVIAGG 206 PILLLD+ + D R +L LK + + + + + + G Sbjct: 302 PILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLEDLADLLENAKIFHVEQG 357 Query: 207 QIV 209 +I Sbjct: 358 KIT 360 >gnl|CDD|179089 PRK00698, tmk, thymidylate kinase; Validated. Length = 205 Score = 28.6 bits (65), Expect = 1.6 Identities = 10/19 (52%), Positives = 12/19 (63%) Query: 28 IVILGPSGAGKSTLLSLMA 46 I I G GAGKST + L+ Sbjct: 6 ITIEGIDGAGKSTQIELLK 24 >gnl|CDD|180064 PRK05416, PRK05416, glmZ(sRNA)-inactivating NTPase; Provisional. Length = 288 Score = 28.5 bits (65), Expect = 1.7 Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%) Query: 27 RIVIL-GPSGAGKSTLL 42 R+VI+ G SGAGKS L Sbjct: 7 RLVIVTGLSGAGKSVAL 23 >gnl|CDD|178349 PLN02748, PLN02748, tRNA dimethylallyltransferase. Length = 468 Score = 28.3 bits (63), Expect = 1.7 Identities = 10/18 (55%), Positives = 16/18 (88%) Query: 24 KAERIVILGPSGAGKSTL 41 KA+ +V++GP+G+GKS L Sbjct: 21 KAKVVVVMGPTGSGKSKL 38 >gnl|CDD|181957 PRK09563, rbgA, GTPase YlqF; Reviewed. Length = 287 Score = 28.2 bits (64), Expect = 1.8 Identities = 12/35 (34%), Positives = 20/35 (57%) Query: 13 NLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAG 47 N + + +A R +I+G GKSTL++ +AG Sbjct: 109 NERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAG 143 >gnl|CDD|183702 PRK12723, PRK12723, flagellar biosynthesis regulator FlhF; Provisional. Length = 388 Score = 28.3 bits (63), Expect = 1.9 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Query: 1 MIKLDHLIYCYDNLKMQFDFQVNKAERIVIL-GPSGAGKSTLLSLMA 46 ++ +IY +K N +R+ IL GP+G GK+T ++ +A Sbjct: 149 KVRDSVIIYIAKTIKCSGSIIDNLKKRVFILVGPTGVGKTTTIAKLA 195 >gnl|CDD|149409 pfam08337, Plexin_cytopl, Plexin cytoplasmic RasGAP domain. This family features the C-terminal regions of various plexins. Plexins are receptors for semaphorins, and plexin signalling is important in path finding and patterning of both neurons and developing blood vessels. The cytoplasmic region, which has been called a SEX domain in some members of this family, is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins. This domain acts as a RasGAP domain. Length = 538 Score = 28.1 bits (63), Expect = 1.9 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 2/71 (2%) Query: 75 ILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQ 134 + F + +H + + P + Q +Q+ + K FL F + SQ S Sbjct: 15 VFFPDPGHETHPLLRDLVPESRRPTVEQGLTQFSQL--LNNKSFLLTFIHTLESQRSFSV 72 Query: 135 RQRVALARCLI 145 R R +A L Sbjct: 73 RDRCNVASLLT 83 >gnl|CDD|184728 PRK14530, PRK14530, adenylate kinase; Provisional. Length = 215 Score = 28.2 bits (63), Expect = 2.0 Identities = 9/14 (64%), Positives = 11/14 (78%) Query: 27 RIVILGPSGAGKST 40 RI++LG GAGK T Sbjct: 5 RILLLGAPGAGKGT 18 >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional. Length = 880 Score = 28.1 bits (63), Expect = 2.0 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 13/46 (28%) Query: 127 PSQMSGGQRQRVALA-RCLI-----------RQKPILLLDEPFAVF 160 P Q+SGG+R L+ RC I P L+LDEP VF Sbjct: 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEP-TVF 823 Score = 26.5 bits (59), Expect = 5.8 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 9/44 (20%) Query: 3 KLDHL----IYCYDNLKMQFDFQVNKAERIVILGPSGAGKSTLL 42 + D + CY + ++ + V VI G +G+GKS+LL Sbjct: 2 RFDRVRLENFKCYADADLRLEDGVT-----VIHGVNGSGKSSLL 40 >gnl|CDD|128472 smart00175, RAB, Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking. Length = 164 Score = 28.2 bits (64), Expect = 2.0 Identities = 10/17 (58%), Positives = 15/17 (88%) Query: 27 RIVILGPSGAGKSTLLS 43 +I+++G SG GKS+LLS Sbjct: 2 KIILIGDSGVGKSSLLS 18 >gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional. Length = 171 Score = 28.1 bits (63), Expect = 2.1 Identities = 10/15 (66%), Positives = 13/15 (86%) Query: 27 RIVILGPSGAGKSTL 41 +I I+G SG+GKSTL Sbjct: 2 KIAIIGYSGSGKSTL 16 >gnl|CDD|184074 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase; Provisional. Length = 512 Score = 27.9 bits (63), Expect = 2.1 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%) Query: 28 IVILGPSGAGKSTLLSLMA---GFKY 50 I I GP+GAGKST+ +A G Y Sbjct: 287 IAIDGPAGAGKSTVTRAVAKKLGLLY 312 >gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 637 Score = 28.0 bits (62), Expect = 2.3 Identities = 38/164 (23%), Positives = 59/164 (35%), Gaps = 54/164 (32%) Query: 16 MQFDFQVNKAERIVIL-GPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLS 74 ++ N +RI+++ GPSG GKST + +++ + L Sbjct: 100 LKAQVLENAPKRILLITGPSGCGKSTTIKILS------------------------KELG 135 Query: 75 ILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMS--- 131 I QE W N P+ +Q K L LE F+ F SQ+ Sbjct: 136 IQVQE---------WSN---PTLPD-----FQKNDHKVTL---SLESCFSNFQSQIEVFS 175 Query: 132 ----GGQRQRVALARCLIRQKPILLLDEPFAVF--DPALRHEIL 169 + L L+ K I+L+++ F D HEIL Sbjct: 176 EFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEIL 219 >gnl|CDD|182226 PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional. Length = 186 Score = 27.8 bits (62), Expect = 2.6 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 10/50 (20%) Query: 28 IVILGPSGAGKSTLLS---------LMAGFKYPTRGSIFLNGQNHTRSSP 68 I ++GPSG+GK +LL+ L+ +Y TR + +NH S Sbjct: 5 IWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPA-SAGSENHIALSE 53 >gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional. Length = 441 Score = 27.8 bits (62), Expect = 2.6 Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 26 ERIVILGPSGAGKSTLLSLMA 46 +R+ I P+G GKSTL+ + A Sbjct: 164 QRMGIFAPAGVGKSTLMGMFA 184 >gnl|CDD|180712 PRK06820, PRK06820, type III secretion system ATPase; Validated. Length = 440 Score = 27.5 bits (61), Expect = 2.9 Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 26 ERIVILGPSGAGKSTLLSLMA 46 +RI I +G GKSTLL ++ Sbjct: 164 QRIGIFAAAGVGKSTLLGMLC 184 >gnl|CDD|183986 PRK13342, PRK13342, recombination factor protein RarA; Reviewed. Length = 413 Score = 27.4 bits (62), Expect = 3.2 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%) Query: 29 VIL-GPSGAGKSTLLSLMAG 47 +IL GP G GK+TL ++AG Sbjct: 39 MILWGPPGTGKTTLARIIAG 58 >gnl|CDD|162177 TIGR01054, rgy, reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. Length = 1171 Score = 27.5 bits (61), Expect = 3.3 Identities = 9/28 (32%), Positives = 16/28 (57%) Query: 21 QVNKAERIVILGPSGAGKSTLLSLMAGF 48 +V + + I+ P+G GK+T M+ F Sbjct: 89 RVLRGDSFAIIAPTGVGKTTFGLAMSLF 116 >gnl|CDD|180056 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional. Length = 854 Score = 27.4 bits (62), Expect = 3.5 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 7/35 (20%) Query: 19 DFQVNKAERIVIL-GPSGAGKST------LLSLMA 46 D +++ R++++ GP+ AGKST L+ L+A Sbjct: 600 DCDLDEERRLLLITGPNMAGKSTYMRQVALIVLLA 634 >gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional. Length = 442 Score = 27.2 bits (60), Expect = 3.6 Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 22 VNKAERIVILGPSGAGKSTLLSLMA 46 V + +RI I +G GKS+LL ++A Sbjct: 161 VARGQRIGIFAGAGVGKSSLLGMIA 185 >gnl|CDD|183904 PRK13231, PRK13231, nitrogenase reductase-like protein; Reviewed. Length = 264 Score = 27.1 bits (60), Expect = 3.6 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Query: 26 ERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNG----QNHTRSSPSKRPLSIL 76 ++I I G G GKST +S MA Y + + G + TR+ KR ++L Sbjct: 3 KKIAIYGKGGIGKSTTVSNMAA-AYSNDHRVLVIGCDPKADTTRTLCGKRIPTVL 56 >gnl|CDD|184726 PRK14527, PRK14527, adenylate kinase; Provisional. Length = 191 Score = 27.1 bits (60), Expect = 3.7 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%) Query: 21 QVNKAERIVILGPSGAGKSTLLSLMA---GFKYPTRGSI 56 K + ++ LGP GAGK T +A G K + G I Sbjct: 2 TQTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDI 40 >gnl|CDD|184151 PRK13570, PRK13570, anthranilate synthase component I; Provisional. Length = 455 Score = 27.2 bits (61), Expect = 4.0 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 8/29 (27%) Query: 194 MQIATRFIVI--------AGGQIVYDGDP 214 IA R +V+ AG IVYD DP Sbjct: 409 FAIAIRTMVLKNGKAYVQAGAGIVYDSDP 437 >gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated. Length = 455 Score = 27.1 bits (60), Expect = 4.3 Identities = 11/27 (40%), Positives = 17/27 (62%) Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGF 48 V + +R+ + SG GKS LL +MA + Sbjct: 172 VGRGQRMGLFAGSGVGKSVLLGMMARY 198 >gnl|CDD|185542 PTZ00293, PTZ00293, thymidine kinase; Provisional. Length = 211 Score = 27.0 bits (60), Expect = 4.3 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 11/58 (18%) Query: 29 VILGPSGAGKST-LLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSH 85 VI+GP +GK+T L+ L+ F Y + + + TR S E N+ SH Sbjct: 8 VIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKDTRYS----------DEQNISSH 55 >gnl|CDD|163008 TIGR02768, TraA_Ti, Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. Length = 744 Score = 27.1 bits (60), Expect = 4.4 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Query: 22 VNKAERI-VILGPSGAGKSTLL 42 V + I V++G +G GKST+L Sbjct: 364 VTGSGDIAVVVGRAGTGKSTML 385 >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional. Length = 1047 Score = 27.1 bits (60), Expect = 4.4 Identities = 10/13 (76%), Positives = 12/13 (92%) Query: 30 ILGPSGAGKSTLL 42 I GP+GAGK+TLL Sbjct: 35 ITGPTGAGKTTLL 47 >gnl|CDD|161932 TIGR00564, trpE_most, anthranilate synthase component I, non-proteobacterial lineages. A second family of TrpE enzymes is modelled by TIGR00565. The breaking of the TrpE family into these diverse models allows for the separation of the models for the related enzyme, PabB. Length = 454 Score = 26.9 bits (60), Expect = 4.4 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 8/31 (25%) Query: 194 MQIATRFIVI--------AGGQIVYDGDPDR 216 IA R +V+ AGG IV D DP+ Sbjct: 407 TAIAIRTMVVKDGKAYVQAGGGIVADSDPEA 437 >gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. Length = 270 Score = 27.0 bits (60), Expect = 4.4 Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 27 RIVILGPSGAGKSTLLSLMAGFK 49 + ILG GKSTLL+ + G K Sbjct: 2 FVAILGRPNVGKSTLLNQLHGQK 24 >gnl|CDD|180607 PRK06526, PRK06526, transposase; Provisional. Length = 254 Score = 26.8 bits (59), Expect = 4.7 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%) Query: 19 DFQVNKAERIVILGPSGAGKSTL 41 DF V E +V LGP G GK+ L Sbjct: 93 DF-VTGKENVVFLGPPGTGKTHL 114 >gnl|CDD|184251 PRK13695, PRK13695, putative NTPase; Provisional. Length = 174 Score = 26.8 bits (60), Expect = 4.7 Identities = 9/16 (56%), Positives = 12/16 (75%) Query: 27 RIVILGPSGAGKSTLL 42 +I I GP G GK+TL+ Sbjct: 2 KIGITGPPGVGKTTLV 17 >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional. Length = 216 Score = 26.8 bits (59), Expect = 4.7 Identities = 10/17 (58%), Positives = 14/17 (82%) Query: 27 RIVILGPSGAGKSTLLS 43 +IV++G SG GKS +LS Sbjct: 14 KIVLIGDSGVGKSNILS 30 >gnl|CDD|163345 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. Length = 276 Score = 26.7 bits (60), Expect = 4.8 Identities = 13/35 (37%), Positives = 21/35 (60%) Query: 13 NLKMQFDFQVNKAERIVILGPSGAGKSTLLSLMAG 47 N K++ N+ R +I+G GKSTL++ +AG Sbjct: 106 NEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAG 140 >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 Score = 26.8 bits (59), Expect = 5.0 Identities = 10/20 (50%), Positives = 15/20 (75%) Query: 23 NKAERIVILGPSGAGKSTLL 42 NK RI+++G AGK+T+L Sbjct: 11 NKEMRILMVGLDAAGKTTIL 30 >gnl|CDD|183342 PRK11860, PRK11860, bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional. Length = 661 Score = 26.9 bits (60), Expect = 5.1 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 8/46 (17%) Query: 20 FQVNKAER-----IVILGPSGAGKSTLLSLMA---GFKYPTRGSIF 57 F V +A+ I I GP+ +GK T+ + +A G+ Y G+++ Sbjct: 432 FSVAQADADRVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALY 477 >gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated. Length = 451 Score = 26.6 bits (59), Expect = 5.1 Identities = 10/27 (37%), Positives = 16/27 (59%) Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGF 48 V + +R+ + +G GKS LL +M F Sbjct: 165 VGRGQRLGLFAGTGVGKSVLLGMMTRF 191 >gnl|CDD|184491 PRK14079, recF, recombination protein F; Provisional. Length = 349 Score = 26.7 bits (59), Expect = 5.5 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 9/50 (18%) Query: 131 SGGQRQRVALA-RC----LIRQK----PILLLDEPFAVFDPALRHEILGL 171 S G+ + VALA R L+ + P+LL+D+ A DP R +L L Sbjct: 265 SRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLAL 314 >gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood. Length = 143 Score = 26.4 bits (59), Expect = 5.7 Identities = 8/15 (53%), Positives = 13/15 (86%) Query: 27 RIVILGPSGAGKSTL 41 +I+++G SG GK+TL Sbjct: 3 KIMLIGRSGCGKTTL 17 >gnl|CDD|181696 PRK09202, nusA, transcription elongation factor NusA; Validated. Length = 470 Score = 26.4 bits (59), Expect = 6.1 Identities = 7/33 (21%), Positives = 18/33 (54%) Query: 167 EILGLLKQVCDERQLTLLMISHNLEDSMQIATR 199 E+L ++ V E+ + ++ LE+++ A + Sbjct: 4 ELLEAIEAVAREKGIDREVVIEALEEALATAYK 36 >gnl|CDD|150194 pfam09439, SRPRB, Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 Score = 26.6 bits (59), Expect = 6.3 Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%) Query: 23 NKAERIVILGPSGAGKSTLLS-LMAGFKYPTRGSI 56 + ++I G +GK++L + L G T S Sbjct: 1 SSQPAVIIAGLCDSGKTSLFTLLTTGSVRKTVTSQ 35 >gnl|CDD|148176 pfam06414, Zeta_toxin, Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid. Length = 191 Score = 26.5 bits (59), Expect = 6.3 Identities = 6/33 (18%), Positives = 15/33 (45%), Gaps = 1/33 (3%) Query: 28 IVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNG 60 +++ G GAGK+ L + + + ++ Sbjct: 15 VLLGGQPGAGKTELARALLE-ELGGGNVVRIDP 46 >gnl|CDD|181256 PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional regulator; Reviewed. Length = 309 Score = 26.5 bits (59), Expect = 6.3 Identities = 11/20 (55%), Positives = 15/20 (75%) Query: 27 RIVILGPSGAGKSTLLSLMA 46 RI ++G GAGKSTL ++A Sbjct: 135 RIALIGLRGAGKSTLGRMLA 154 >gnl|CDD|163531 TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer. Length = 340 Score = 26.5 bits (59), Expect = 6.5 Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 28 IVILGPSGAGKSTLLSLMAG 47 +I G +G+GK+TLLS + Sbjct: 181 FLISGGTGSGKTTLLSALLA 200 >gnl|CDD|184258 PRK13702, PRK13702, replication protein; Provisional. Length = 85 Score = 26.2 bits (58), Expect = 6.6 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 11/67 (16%) Query: 130 MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLL-MISH 188 +S ++QR ++AR K I VF +++ + L ++C+E LT MI Sbjct: 24 LSAAEKQRASVARKRATHKEI-------KVF---IQNPLKDKLMELCEEEGLTQAEMIER 73 Query: 189 NLEDSMQ 195 +E + Sbjct: 74 LIERELA 80 >gnl|CDD|183407 PRK12289, PRK12289, GTPase RsgA; Reviewed. Length = 352 Score = 26.5 bits (59), Expect = 6.6 Identities = 9/14 (64%), Positives = 12/14 (85%) Query: 29 VILGPSGAGKSTLL 42 V+ GPSG GKS+L+ Sbjct: 176 VVAGPSGVGKSSLI 189 >gnl|CDD|162997 TIGR02746, TraC-F-type, type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase. Length = 797 Score = 26.5 bits (59), Expect = 6.7 Identities = 8/19 (42%), Positives = 12/19 (63%) Query: 28 IVILGPSGAGKSTLLSLMA 46 I ++G SGAGKS + + Sbjct: 433 IAVVGGSGAGKSFFMQELI 451 >gnl|CDD|128538 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin. Length = 677 Score = 26.4 bits (59), Expect = 7.2 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 5/31 (16%) Query: 10 CYDNLKMQFDFQVNKAERIVILGPSGAGKST 40 Y N+ + + I+I G SGAGK+ Sbjct: 82 AYRNML-----NDKENQSIIISGESGAGKTE 107 >gnl|CDD|183713 PRK12740, PRK12740, elongation factor G; Reviewed. Length = 668 Score = 26.2 bits (59), Expect = 7.5 Identities = 8/12 (66%), Positives = 10/12 (83%) Query: 31 LGPSGAGKSTLL 42 +G SGAGK+TL Sbjct: 1 VGHSGAGKTTLT 12 >gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional. Length = 334 Score = 26.4 bits (58), Expect = 7.5 Identities = 9/19 (47%), Positives = 16/19 (84%) Query: 27 RIVILGPSGAGKSTLLSLM 45 R++++G SG GKS+L+ L+ Sbjct: 23 RVLVVGDSGVGKSSLVHLI 41 >gnl|CDD|162298 TIGR01313, therm_gnt_kin, carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases. Length = 163 Score = 26.2 bits (58), Expect = 7.8 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%) Query: 28 IVILGPSGAGKSTLLSLMA---GFKY 50 V++G +G+GKST+ S +A G K+ Sbjct: 1 FVLMGVAGSGKSTIASALAHRLGAKF 26 >gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated. Length = 434 Score = 26.0 bits (57), Expect = 8.0 Identities = 15/40 (37%), Positives = 22/40 (55%) Query: 22 VNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQ 61 + K +RI + G+GKS+LLS +A T I L G+ Sbjct: 154 LGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGE 193 >gnl|CDD|185364 PRK15467, PRK15467, ethanolamine utilization protein EutP; Provisional. Length = 158 Score = 26.1 bits (57), Expect = 8.2 Identities = 10/22 (45%), Positives = 15/22 (68%) Query: 26 ERIVILGPSGAGKSTLLSLMAG 47 +RI +G GAGK+TL + + G Sbjct: 2 KRIAFVGAVGAGKTTLFNALQG 23 >gnl|CDD|128807 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS family. Length = 185 Score = 26.0 bits (58), Expect = 8.4 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 6/25 (24%) Query: 28 IVILGPSGAGKSTLL------SLMA 46 ++I GP+ GKST L +MA Sbjct: 2 VIITGPNMGGKSTYLRQVGLIVIMA 26 >gnl|CDD|179793 PRK04220, PRK04220, 2-phosphoglycerate kinase; Provisional. Length = 301 Score = 26.1 bits (58), Expect = 8.5 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 2/18 (11%) Query: 26 ERIVIL--GPSGAGKSTL 41 E I+IL G SG G ST+ Sbjct: 91 EPIIILIGGASGVGTSTI 108 >gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated. Length = 432 Score = 26.1 bits (57), Expect = 8.6 Identities = 11/21 (52%), Positives = 15/21 (71%) Query: 26 ERIVILGPSGAGKSTLLSLMA 46 ++I I SG GKSTLL ++A Sbjct: 157 QKIGIFAGSGVGKSTLLGMIA 177 >gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. Length = 142 Score = 25.9 bits (57), Expect = 9.4 Identities = 8/15 (53%), Positives = 11/15 (73%) Query: 27 RIVILGPSGAGKSTL 41 RI+ +G G GK+TL Sbjct: 2 RIMFIGSVGCGKTTL 16 >gnl|CDD|179921 PRK05057, aroK, shikimate kinase I; Reviewed. Length = 172 Score = 25.8 bits (57), Expect = 9.5 Identities = 9/14 (64%), Positives = 12/14 (85%) Query: 28 IVILGPSGAGKSTL 41 I ++GP GAGKST+ Sbjct: 7 IFLVGPMGAGKSTI 20 >gnl|CDD|162351 TIGR01420, pilT_fam, pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. Length = 343 Score = 25.7 bits (57), Expect = 9.6 Identities = 10/18 (55%), Positives = 15/18 (83%) Query: 28 IVILGPSGAGKSTLLSLM 45 I++ GP+G+GKST L+ M Sbjct: 125 ILVTGPTGSGKSTTLASM 142 >gnl|CDD|161957 TIGR00611, recf, recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 365 Score = 25.8 bits (57), Expect = 9.9 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 5/33 (15%) Query: 10 CYDNLKMQFDFQVNKAERIVILGPSGAGKSTLL 42 YD + ++ VN VI+GP+G GK+ LL Sbjct: 13 NYDAVDLELSPGVN-----VIVGPNGQGKTNLL 40 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.325 0.141 0.420 Gapped Lambda K H 0.267 0.0636 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,957,724 Number of extensions: 253368 Number of successful extensions: 1549 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1246 Number of HSP's successfully gapped: 428 Length of query: 234 Length of database: 5,994,473 Length adjustment: 90 Effective length of query: 144 Effective length of database: 4,049,753 Effective search space: 583164432 Effective search space used: 583164432 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 56 (25.5 bits)