HHsearch alignment for GI: 254780561 and conserved domain: COG3181
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=96.50 E-value=0.051 Score=29.98 Aligned_cols=236 Identities=12% Similarity=0.035 Sum_probs=101.0
Q ss_pred CCEEEEEEC-CCCCCCHHHHHHHHHHHHHHHCCE--EEEEECCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHC
Q ss_conf 885999978-877851223388999999884887--99997288689997887531266410110133378999887521
Q gi|254780561|r 29 KPVLTVYTY-NSFVADEGAGPKIKQAFERKCNCE--LKLIGLSDGVALLNKLRMEGENSAADIVLGFDNNLIDLARKTGL 105 (338)
Q Consensus 29 ~~~l~v~~~-~~~~~~~~~~~~i~~~Fek~~gik--V~~~~~~~~~~~~~~~~a~~~~~~~Dv~~~~~~~~~~~~~~~~l 105 (338)
T Consensus 27 ~~~it~Ivp~~~GGg~D~~aR~~~~~l~k~lg~~v~V~N~pGagG~ia~~~va~a~pG~t~~l~~~-~~~~~~~~~~~~~ 105 (319)
T COG3181 27 ERPITIIVPAAAGGGTDQTARALAESLSKELGQPVVVDNKPGAGGAIAAGAVAKAAPGYTILLIAG-STPALLLPILGGL 105 (319)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEC-CCCCCCCHHHCCC
T ss_conf 787589996589875889999999999998089779995588731688999984589984488734-7643221544268
Q ss_pred CCCCCCCHHHCCCCCCCCCCCCCCEEEEEEHHHHCCCCCCCCCCCHHHHCCCCCC--CEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 2613677000210001243211532431000110011124587645652120006--82898504765303678999987
Q gi|254780561|r 106 FAKSNIDASQLKLPIKWDDDIFVPYDYGYLAFIYDKRQITQPPKNFDELINSTKP--WKIIYQDPRTSTLGLGLLLWIQK 183 (338)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~p~s~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 183 (338)
T Consensus 106 ~~~~~~---D~~--------pva~v~~~p~~l~v~---~~s~~~t~~dlv~~~k~~p~~v~~~~~g~Gs~dhl~~~~~~k 171 (319)
T COG3181 106 PYYKLK---DFT--------PVASLVSDPGVLVVR---ADSPYKTLKDLVAYAKADPGSVIGGGSGLGSADHLAGALFAK 171 (319)
T ss_pred CCCCHH---HCE--------EHHHEECCCCEEEEE---CCCCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHH
T ss_conf 888544---230--------033111366159981---788736699999999859980895478889588999999999
Q ss_pred HCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEEEC-------------CC-C
Q ss_conf 177313789877762884683084789888622586569995044999998507997378831-------------69-8
Q gi|254780561|r 184 IYGDNSAQVWKKIATKTATVTKGWTESYGFFLKGESDFVLSYSTSPGFYLLNYGQDDYVAALF-------------SE-G 249 (338)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~e-G 249 (338)
T Consensus 172 ~~Gi----------~~~~Vpy~g~gea~taLlgg~v~a~~~~~se~~-~~vksG~lr~Lav~s~eRl~~~pdvPT~~E~G 240 (319)
T COG3181 172 AAGI----------KITYVPYKGGGEALTALLGGHVDAGSTNLSELL-SQVKSGTLRLLAVFSEERLPGLPDVPTLKEQG 240 (319)
T ss_pred HHCC----------CEEEEEECCCCHHHHHHHCCCEEEEECCHHHHH-HHHCCCCEEEEEEECHHHCCCCCCCCCHHHCC
T ss_conf 7389----------625774168648789986086654436712435-56305746787753431067799999867638
Q ss_pred ---EEEEEEEEEEECCCCCHHH---HHHHHHHHCCHHHHHHHHHCCC
Q ss_conf ---0888864243378999899---9999999639999999885045
Q gi|254780561|r 250 ---HYLQIEVAAQLVRSKQPQL---AQEFMQFMISPSFQRILPTTNW 290 (338)
Q Consensus 250 ---~~~~~~~~~i~k~a~n~~~---A~~Fi~flls~e~Q~~~a~~~~ 290 (338)
T Consensus 241 ~~~~~~~wrgvfap~g~~~e~~~~~~~a~kk~l~s~e~~~~~~~~~~ 287 (319)
T COG3181 241 YDVVMSIWRGVFAPAGTPDEIIAKLSAALKKALASPEWQKRLKELGL 287 (319)
T ss_pred CCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
T ss_conf 75466443589807999999999999999998639889999985588