HHsearch alignment for GI: 254780561 and conserved domain: COG4134
>COG4134 ABC-type uncharacterized transport system, periplasmic component [General function prediction only].
Probab=99.86 E-value=5e-20 Score=134.98 Aligned_cols=327 Identities=15% Similarity=0.196 Sum_probs=201.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCC----CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHH
Q ss_conf 902799999999999999861467----4234885999978877851223388999999884887999972886899978
Q gi|254780561|r 1 MKKFARIVVGIMMITGVISYCTLD----GLPAKPVLTVYTYNSFVADEGAGPKIKQAFERKCNCELKLIGLSDGVALLNK 76 (338)
Q Consensus 1 MKk~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~v~~~~~~~~~~~~~~~i~~~Fek~~gikV~~~~~~~~~~~~~~ 76 (338)
T Consensus 1 M~~~~~~L~~~~la~~lat~a~~w~e~~akA~~q~vyfnawgg~~~~ns~~~W~~~~~~~kYgi~v~~~~l~-~~~a~~~ 79 (384)
T COG4134 1 MKRHLGTLAALLLAFSLATHASDWDEVKAKAKGQTVYFNAWGGSTAINSYADWVSDEMKAKYGIKVAIVRLD-AADAVKR 79 (384)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCCCHHCCCCCCCCHHHCCCCEEEEEECCC-HHHHHHH
T ss_conf 962378999999974566523678999986357736998505631000026532202320025178751241-8888888
Q ss_pred HHH---HHCCC--CCEEEECCCHHHHHHHHHHHCCCCCC----CCHHH------CCCCCCCCCCCCCCEEEEEEHHHHCC
Q ss_conf 875---31266--41011013337899988752126136----77000------21000124321153243100011001
Q gi|254780561|r 77 LRM---EGENS--AADIVLGFDNNLIDLARKTGLFAKSN----IDASQ------LKLPIKWDDDIFVPYDYGYLAFIYDK 141 (338)
Q Consensus 77 ~~a---~~~~~--~~Dv~~~~~~~~~~~~~~~~l~~~~~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~y~~ 141 (338)
T Consensus 80 ~~a~~AAG~~e~g~VDl~~~~g~n~p~-lk~~~~Ly~~~~~~LPnwr~~d~ql~~tdf~~pt~Gl~~~~~~~q~~f~yd~ 158 (384)
T COG4134 80 LIAELAAGRDEGGSVDLLWINGENFPT-LKEAGLLYTPWAEDLPNWRYVDHQLPRTDFSVPTEGLESPWGGNQLVFIYDR 158 (384)
T ss_pred HHHHHHCCCCCCCCEEEEEECCCCCHH-HHHCCCCCCCHHHHCCCCHHHCHHCCCCCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf 999986425568726899835754133-4316620251232186601203003533257887762144027752388723
Q ss_pred CCCCCCCCCHHHHCC--CCCCCEEEEEECCCCCCHHHHHHHHHH-------------------HCCCCHHHHHHHHHHCC
Q ss_conf 112458764565212--000682898504765303678999987-------------------17731378987776288
Q gi|254780561|r 142 RQITQPPKNFDELIN--STKPWKIIYQDPRTSTLGLGLLLWIQK-------------------IYGDNSAQVWKKIATKT 200 (338)
Q Consensus 142 ~~~~~~p~s~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 200 (338)
T Consensus 159 ~k~~~~P~s~eeLL~wA~aNP~rf~Y~~P~~gg~G~~Fl~~~~i~Lt~d~~~l~~avDpat~~k~~~p~WqYl~~Lh~~i 238 (384)
T COG4134 159 DKVPQVPQSFEELLVWAKANPKRFGYPRPPNGGTGTAFLKQLLIMLTGDAAALQQAVDPATFAKVWAPLWQYLDELHPYI 238 (384)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 44788773999999999859675356899988860769998899854855765078880777762108999999861556
Q ss_pred CEEECCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHC--CCCEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 4683084789888622586569995044999998507--99737883169808888642433789998999999999639
Q gi|254780561|r 201 ATVTKGWTESYGFFLKGESDFVLSYSTSPGFYLLNYG--QDDYVAALFSEGHYLQIEVAAQLVRSKQPQLAQEFMQFMIS 278 (338)
Q Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~eG~~~~~~~~~i~k~a~n~~~A~~Fi~flls 278 (338)
T Consensus 239 ~r~~kg~Adml~lL~dG~L~l~~t~~~-~~~s~~~tG~lp~s~~~~~~~~G~vgn~~f~aIPaNa~~~A~alvl~n~lls 317 (384)
T COG4134 239 WRTGKGPADMLQLLNDGTLYLTLTFPD-HASSAIATGDLPASARSFALEKGMVGNGHFMAIPANANAKAAALVLANFLLS 317 (384)
T ss_pred HHCCCCHHHHHHHHCCCCEEEEECCHH-HHHCCHHCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCC
T ss_conf 013898789998741784788604606-6403022167866766421016653675169822799970699999988639
Q ss_pred HHHHH-HHHHCCCEEE--CCCCCCCCHHHHC---CCC--CCCC--CCCHHHHHHHHHHHHHH
Q ss_conf 99999-9885045050--5576588213412---232--2234--78989999999999999
Q gi|254780561|r 279 PSFQR-ILPTTNWMYP--VVDISMPDVYQAI---RIP--QKSL--RFNAEETTRYRNQWISS 330 (338)
Q Consensus 279 ~e~Q~-~~a~~~~~~P--~~~~~~p~~~~~~---~~~--~~~~--~~~~~~~~~~~~~~~~~ 330 (338)
T Consensus 318 ~EaQlrk~d~~v~~~P~~l~pq~lpda~qe~~~~~~p~~~~P~l~~php~w~~a~~~ew~~~ 379 (384)
T COG4134 318 PEAQLRKLDPAVWGDPSVLDPQLLPDAQQEFLQSRMPQDLPPVLAEPHPAWMMALEQEWARR 379 (384)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 88887651520148964258001746675543204754568501478606899999999987