HHsearch alignment for GI: 254780561 and conserved domain: COG4588

>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only].
Probab=99.49  E-value=4.6e-11  Score=82.74  Aligned_cols=245  Identities=15%  Similarity=0.170  Sum_probs=144.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHH
Q ss_conf             90279999999999999986146742348859999788778512233889999998848879999728868999788753
Q gi|254780561|r    1 MKKFARIVVGIMMITGVISYCTLDGLPAKPVLTVYTYNSFVADEGAGPKIKQAFERKCNCELKLIGLSDGVALLNKLRME   80 (338)
Q Consensus         1 MKk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~i~~~Fek~~gikV~~~~~~~~~~~~~~~~a~   80 (338)
T Consensus         1 Mk~~~~i~~~~~La~s---------~~~~adinlYGpGG---PhtaL~~vA~~~~ektg~kVnvt-~GPq~tW~~kA---   64 (252)
T COG4588           1 MKKAVLILLIFLLAFS---------SAANADINLYGPGG---PHTALKDVAKKYEEKTGIKVNVT-AGPQATWNEKA---   64 (252)
T ss_pred             CCHHHHHHHHHHHHHH---------HHHCCEEEEECCCC---CCHHHHHHHHHHHHHHCEEEEEE-CCCCCHHHHHH---
T ss_conf             9336889999999724---------64045178766999---86789999999878748079994-18861044564---


Q ss_pred             HCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCEEEEEEHHHHCCCCCCCCCCCHHHHCCCCCC
Q ss_conf             12664101101333789998875212613677000210001243211532431000110011124587645652120006
Q gi|254780561|r   81 GENSAADIVLGFDNNLIDLARKTGLFAKSNIDASQLKLPIKWDDDIFVPYDYGYLAFIYDKRQITQPPKNFDELINSTKP  160 (338)
Q Consensus        81 ~~~~~~Dv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~p~s~~~l~~~~~~  160 (338)
T Consensus        65 --kknADilfgaseqsalaia~~~-----~~~fs~~~i~---------ply~R~-aiIlvkkgNPknIk~~eDll~~gi-  126 (252)
T COG4588          65 --KKNADILFGASEQSALAIAEDH-----KDSFSEKNIQ---------PLYLRP-AIILVKKGNPKNIKGFEDLLKPGI-  126 (252)
T ss_pred             --HCCCCEEECCCHHHHHHHHHHC-----CCCCCCCCCC---------EEEEEC-EEEEECCCCCCCCCCHHHHHCCCC-
T ss_conf             --1367456416488899999856-----3335520253---------135402-179962799544456888705786-


Q ss_pred             CEEEEEECCC----CCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHC-CCCCEEEEECCHHHHHHHH
Q ss_conf             8289850476----5303678999987177313789877762884683084789888622-5865699950449999985
Q gi|254780561|r  161 WKIIYQDPRT----STLGLGLLLWIQKIYGDNSAQVWKKIATKTATVTKGWTESYGFFLK-GESDFVLSYSTSPGFYLLN  235 (338)
Q Consensus       161 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~  235 (338)
T Consensus       127 -~ivV~dGaG~sntsgtgvwED~a----gr~~~ie~v~afR~NI~~fapnSgaArkaf~~~~~aDawItW~dWa------  195 (252)
T COG4588         127 -GIVVNDGAGVSNTSGTGVWEDIA----GRKGNIETVAAFRKNIVAFAPNSGAARKAFENQPDADAWITWADWA------  195 (252)
T ss_pred             -EEEEECCCCCCCCCCCEEHHHHH----CCCCCHHHHHHHHHCEEEECCCCCHHHHHHHCCCCCCEEEEECCHH------
T ss_conf             -29983797644777722048654----1011488999988523897468704899985499985588701323------


Q ss_pred             HCCCCEEEEEC-CCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCE
Q ss_conf             07997378831-698088886424337899989999999996399999998850450
Q gi|254780561|r  236 YGQDDYVAALF-SEGHYLQIEVAAQLVRSKQPQLAQEFMQFMISPSFQRILPTTNWM  291 (338)
Q Consensus       236 ~~~~~~~~~~~-~eG~~~~~~~~~i~k~a~n~~~A~~Fi~flls~e~Q~~~a~~~~~  291 (338)
T Consensus       196 ~snpdig~~v~~~~d~vIyRd~nv~~~~~a~~-ea~~F~dyl~S~EAq~ifkkygW~  251 (252)
T COG4588         196 KSNPDIGDAVEIEKDYVIYRDFNVALAKDANK-EARDFADYLQSDEAQKIFKKYGWT  251 (252)
T ss_pred             HHCCCHHCEEECCCCEEEEEECCEEECCCCCH-HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             30985010045166617754020343689997-899999997217789999860767