HHsearch alignment for GI: 254780561 and conserved domain: COG4588
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only].
Probab=99.49 E-value=4.6e-11 Score=82.74 Aligned_cols=245 Identities=15% Similarity=0.170 Sum_probs=144.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 90279999999999999986146742348859999788778512233889999998848879999728868999788753
Q gi|254780561|r 1 MKKFARIVVGIMMITGVISYCTLDGLPAKPVLTVYTYNSFVADEGAGPKIKQAFERKCNCELKLIGLSDGVALLNKLRME 80 (338)
Q Consensus 1 MKk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~i~~~Fek~~gikV~~~~~~~~~~~~~~~~a~ 80 (338)
T Consensus 1 Mk~~~~i~~~~~La~s---------~~~~adinlYGpGG---PhtaL~~vA~~~~ektg~kVnvt-~GPq~tW~~kA--- 64 (252)
T COG4588 1 MKKAVLILLIFLLAFS---------SAANADINLYGPGG---PHTALKDVAKKYEEKTGIKVNVT-AGPQATWNEKA--- 64 (252)
T ss_pred CCHHHHHHHHHHHHHH---------HHHCCEEEEECCCC---CCHHHHHHHHHHHHHHCEEEEEE-CCCCCHHHHHH---
T ss_conf 9336889999999724---------64045178766999---86789999999878748079994-18861044564---
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCEEEEEEHHHHCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 12664101101333789998875212613677000210001243211532431000110011124587645652120006
Q gi|254780561|r 81 GENSAADIVLGFDNNLIDLARKTGLFAKSNIDASQLKLPIKWDDDIFVPYDYGYLAFIYDKRQITQPPKNFDELINSTKP 160 (338)
Q Consensus 81 ~~~~~~Dv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~p~s~~~l~~~~~~ 160 (338)
T Consensus 65 --kknADilfgaseqsalaia~~~-----~~~fs~~~i~---------ply~R~-aiIlvkkgNPknIk~~eDll~~gi- 126 (252)
T COG4588 65 --KKNADILFGASEQSALAIAEDH-----KDSFSEKNIQ---------PLYLRP-AIILVKKGNPKNIKGFEDLLKPGI- 126 (252)
T ss_pred --HCCCCEEECCCHHHHHHHHHHC-----CCCCCCCCCC---------EEEEEC-EEEEECCCCCCCCCCHHHHHCCCC-
T ss_conf --1367456416488899999856-----3335520253---------135402-179962799544456888705786-
Q ss_pred CEEEEEECCC----CCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHC-CCCCEEEEECCHHHHHHHH
Q ss_conf 8289850476----5303678999987177313789877762884683084789888622-5865699950449999985
Q gi|254780561|r 161 WKIIYQDPRT----STLGLGLLLWIQKIYGDNSAQVWKKIATKTATVTKGWTESYGFFLK-GESDFVLSYSTSPGFYLLN 235 (338)
Q Consensus 161 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~ 235 (338)
T Consensus 127 -~ivV~dGaG~sntsgtgvwED~a----gr~~~ie~v~afR~NI~~fapnSgaArkaf~~~~~aDawItW~dWa------ 195 (252)
T COG4588 127 -GIVVNDGAGVSNTSGTGVWEDIA----GRKGNIETVAAFRKNIVAFAPNSGAARKAFENQPDADAWITWADWA------ 195 (252)
T ss_pred -EEEEECCCCCCCCCCCEEHHHHH----CCCCCHHHHHHHHHCEEEECCCCCHHHHHHHCCCCCCEEEEECCHH------
T ss_conf -29983797644777722048654----1011488999988523897468704899985499985588701323------
Q ss_pred HCCCCEEEEEC-CCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCE
Q ss_conf 07997378831-698088886424337899989999999996399999998850450
Q gi|254780561|r 236 YGQDDYVAALF-SEGHYLQIEVAAQLVRSKQPQLAQEFMQFMISPSFQRILPTTNWM 291 (338)
Q Consensus 236 ~~~~~~~~~~~-~eG~~~~~~~~~i~k~a~n~~~A~~Fi~flls~e~Q~~~a~~~~~ 291 (338)
T Consensus 196 ~snpdig~~v~~~~d~vIyRd~nv~~~~~a~~-ea~~F~dyl~S~EAq~ifkkygW~ 251 (252)
T COG4588 196 KSNPDIGDAVEIEKDYVIYRDFNVALAKDANK-EARDFADYLQSDEAQKIFKKYGWT 251 (252)
T ss_pred HHCCCHHCEEECCCCEEEEEECCEEECCCCCH-HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 30985010045166617754020343689997-899999997217789999860767