HHsearch alignment for GI: 254780561 and conserved domain: PRK09501
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed.
Probab=100.00 E-value=0 Score=296.78 Aligned_cols=284 Identities=15% Similarity=0.218 Sum_probs=220.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 90279999999999999986146742348859999788778512233889999998848879999728868999788753
Q gi|254780561|r 1 MKKFARIVVGIMMITGVISYCTLDGLPAKPVLTVYTYNSFVADEGAGPKIKQAFERKCNCELKLIGLSDGVALLNKLRME 80 (338)
Q Consensus 1 MKk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~i~~~Fek~~gikV~~~~~~~~~~~~~~~~a~ 80 (338)
T Consensus 1 ~~~~~~~ll~~~a~~l~~~~~---~a~~~~~L~i~~W~~Yi~-----~~~i~~Fe~etGikV~~~~~~s~ee~~akL~a~ 72 (348)
T PRK09501 1 MKKWSRHLLAAGALALGMSAA---HADDNNTLYFYNWTEYVP-----PGLLEQFTKETGIKVIYSTYESNETMYAKLKTY 72 (348)
T ss_pred CHHHHHHHHHHHHHHHHCCHH---HHCCCCEEEEECCCCCCC-----HHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCC
T ss_conf 936899999999999735033---543389799987100189-----789999999989889999549999999999717
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCHHHC---------CCCCCCCCCCCCCEEEEEEHHHHCCCCCC-CCCCC
Q ss_conf 126641011013337899988752126136770002---------10001243211532431000110011124-58764
Q gi|254780561|r 81 GENSAADIVLGFDNNLIDLARKTGLFAKSNIDASQL---------KLPIKWDDDIFVPYDYGYLAFIYDKRQIT-QPPKN 150 (338)
Q Consensus 81 ~~~~~~Dv~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~y~~~~~~-~~p~s 150 (338)
T Consensus 73 ~-~~~yDvv~p-s~~~v~~l~~~gll~~LD~s~ipN~~nl~p~~~~~~~dp~~~y~vPy~wGt~Gi~yn~d~v~~~~~~S 150 (348)
T PRK09501 73 K-DGAYDLVVP-STYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTS 150 (348)
T ss_pred C-CCCCEEEEE-CHHHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCC
T ss_conf 9-998289997-96899999977984547842284812269767447748998489889975115998501147888887
Q ss_pred HHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC------CCHHHHHHHHHHCCCEEECCCHHHHHHHHCCCCCEEEE
Q ss_conf 565212000682898504765303678999987177------31378987776288468308478988862258656999
Q gi|254780561|r 151 FDELINSTKPWKIIYQDPRTSTLGLGLLLWIQKIYG------DNSAQVWKKIATKTATVTKGWTESYGFFLKGESDFVLS 224 (338)
Q Consensus 151 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (338)
T Consensus 151 W~dL~dp~~kGki~~~d~~~~~~~~al~~lG~~~n~~d~~~l~~a~~~L~~~~~~i~~~~sd--~~~~~l~~Gev~ia~~ 228 (348)
T PRK09501 151 WADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSD--NPANPYMEGEVNLGMI 228 (348)
T ss_pred HHHHCCHHHCCEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECC--CHHHHHHCCCCEEEEE
T ss_conf 89854966479079716678999999998279988899999999999999851105898177--0546987388329987
Q ss_pred ECCHHHHHHHHHCCCCEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCEEECCCCC
Q ss_conf 50449999985079973788316980888864243378999899999999963999999988504505055765
Q gi|254780561|r 225 YSTSPGFYLLNYGQDDYVAALFSEGHYLQIEVAAQLVRSKQPQLAQEFMQFMISPSFQRILPTTNWMYPVVDIS 298 (338)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~eG~~~~~~~~~i~k~a~n~~~A~~Fi~flls~e~Q~~~a~~~~~~P~~~~~ 298 (338)
T Consensus 229 wsgda--~~~~~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~n~e~A~~FInf~l~Pevaa~~a~~~~y~t~n~~A 300 (348)
T PRK09501 229 WNGSA--FVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAA 300 (348)
T ss_pred ECHHH--HHHHHCCCCCCEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHH
T ss_conf 40589--9999708997189757886699899889899989899999999861979999999974889830888