HHsearch alignment for GI: 254780561 and conserved domain: PRK11553
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional.
Probab=97.89 E-value=0.0015 Score=38.95 Aligned_cols=229 Identities=12% Similarity=0.058 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH-CCEEEEEECCCHHHHHHHHHH
Q ss_conf 9027999999999999998614674234885999978877851223388999999884-887999972886899978875
Q gi|254780561|r 1 MKKFARIVVGIMMITGVISYCTLDGLPAKPVLTVYTYNSFVADEGAGPKIKQAFERKC-NCELKLIGLSDGVALLNKLRM 79 (338)
Q Consensus 1 MKk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~i~~~Fek~~-gikV~~~~~~~~~~~~~~~~a 79 (338)
T Consensus 1 ~~~~l~~~la~~~~~~~~~---~~~~~~~~~lrIgyq~-~~~~~-~~~~~~~~~ek~~~~~kV~w~~F~~G~~~~eAl~a 75 (314)
T PRK11553 1 MRNIIKLALAGLLSVSTLA---VAAESSPEALRIGYQK-GSIGL-VLAKSHQLLEKRFPQTKISWVEFPAGPQMLEALNV 75 (314)
T ss_pred CHHHHHHHHHHHHHHHHHH---HHHHCCCCEEEEEECC-CCHHH-HHHHHCCHHHHHCCCCCEEEEECCCCHHHHHHHHC
T ss_conf 9779999999999998754---4433489759999617-74158-99985286766178983589978974899999976
Q ss_pred HHCCCCCEEEECCCHHHHHHHHHHHC-CCCCCCCHHHCCCCCCCCCCCCCCEEEEEEHHHHCCCCCCCCCCCHHHHCCCC
Q ss_conf 31266410110133378999887521-26136770002100012432115324310001100111245876456521200
Q gi|254780561|r 80 EGENSAADIVLGFDNNLIDLARKTGL-FAKSNIDASQLKLPIKWDDDIFVPYDYGYLAFIYDKRQITQPPKNFDELINST 158 (338)
Q Consensus 80 ~~~~~~~Dv~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~p~s~~~l~~~~ 158 (338)
T Consensus 76 ----G~iD~~~~g~~p~i~a~a-~G~~~~~va----------------~~~~~~~~~~i~V~---~~S~I~s~aDL---- 127 (314)
T PRK11553 76 ----GSIDLGSTGDIPPIFAQA-AGADLVYVG----------------VEPPKPKAEVILVA---ENSPIKTVADL---- 127 (314)
T ss_pred ----CCCCEEEECCHHHHHHHH-CCCCEEEEE----------------EECCCCCCEEEEEE---CCCCCCCHHHH----
T ss_conf ----997545115858999986-699869999----------------86378864189984---89877888893----
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHC
Q ss_conf 0682-898504765303678999987177313789877762884683084789888622586569995044999998507
Q gi|254780561|r 159 KPWK-IIYQDPRTSTLGLGLLLWIQKIYGDNSAQVWKKIATKTATVTKGWTESYGFFLKGESDFVLSYSTSPGFYLLNYG 237 (338)
Q Consensus 159 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 237 (338)
T Consensus 128 -kGKkVa~~-~-Gs~~~~~l~~aL-~~aGL~~~D--------V~~v~l~p~d~~aAl~~G~VDA~~~w~P~~~~-a~~~~ 194 (314)
T PRK11553 128 -KGHKVAFQ-K-GSSSHNLLLRAL-RQAGLKFTD--------IQPTYLTPADARAAFQQGNVDAWAIWDPYYSA-ALLQG 194 (314)
T ss_pred -CCCEEEEE-C-CCHHHHHHHHHH-HHCCCCHHH--------EEEEECCCHHHHHHHHCCCCCEEEECCHHHHH-HHHCC
T ss_conf -89989741-7-973799999999-986998899--------18984593889999966997889975678999-98628
Q ss_pred CCCEEEEECCCCEEEEEEEEEEEC---CCCCHHHHHHHHHHHCC
Q ss_conf 997378831698088886424337---89998999999999639
Q gi|254780561|r 238 QDDYVAALFSEGHYLQIEVAAQLV---RSKQPQLAQEFMQFMIS 278 (338)
Q Consensus 238 ~~~~~~~~~~eG~~~~~~~~~i~k---~a~n~~~A~~Fi~flls 278 (338)
T Consensus 195 g--aRvl~dg~~~~~~~-~~~~~~~~fa~~~p~~v~~~l~~l~~ 235 (314)
T PRK11553 195 G--VRVLKDGTDLNQTG-SFYLAARPYAEKNGAFIQQVLATLSE 235 (314)
T ss_pred C--CEEEECCCCCCCCC-CEEEECHHHHHHCHHHHHHHHHHHHH
T ss_conf 9--58985376667776-16886189888799999999999999