HHsearch alignment for GI: 254780561 and conserved domain: TIGR03431
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=98.46 E-value=9e-05 Score=46.03 Aligned_cols=250 Identities=14% Similarity=0.063 Sum_probs=121.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC--HHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHH
Q ss_conf 9027999999999999998614674234885999978877851--22338899999988488799997288689997887
Q gi|254780561|r 1 MKKFARIVVGIMMITGVISYCTLDGLPAKPVLTVYTYNSFVAD--EGAGPKIKQAFERKCNCELKLIGLSDGVALLNKLR 78 (338)
Q Consensus 1 MKk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~--~~~~~~i~~~Fek~~gikV~~~~~~~~~~~~~~~~ 78 (338)
T Consensus 1 m~~r--~l~~~~~~~~~~~~-~a~a~~~p~~l~~gv~P~~~~~~~~~~~~Pl~~yL~~~lg~~Ve~~~~~~y~~~~eal~ 77 (288)
T TIGR03431 1 MLRR--LILSLVAAFMLISS-NAQAEDWPKELNFGIIPTENASDLKQRWEPLADYLSKKLGVKVKLFFATDYAGVIEGMR 77 (288)
T ss_pred CCHH--HHHHHHHHHHHHCC-HHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH
T ss_conf 9088--99999999999743-22430488368999806999999999999999999998789789996899999999998
Q ss_pred HHHCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCEEEEEEHHHHCCCCCCCCCCCHHHHCCCC
Q ss_conf 53126641011013337899988752126136770002100012432115324310001100111245876456521200
Q gi|254780561|r 79 MEGENSAADIVLGFDNNLIDLARKTGLFAKSNIDASQLKLPIKWDDDIFVPYDYGYLAFIYDKRQITQPPKNFDELINST 158 (338)
Q Consensus 79 a~~~~~~~Dv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~p~s~~~l~~~~ 158 (338)
T Consensus 78 ----~g~~Dia~~~p~~yv~a~~~~~~-~~la~~~~------~~----g~~~--y~s~iivr~D---s~i~sl~DLk--- 134 (288)
T TIGR03431 78 ----FGKVDIAWYGPSSYAEAYQKANA-EAFAIEVN------AD----GSTG--YYSVLIVKKD---SPIKSLEDLK--- 134 (288)
T ss_pred ----CCCCEEEEECCHHHHHHHHCCCC-EEEEEEEC------CC----CCCC--EEEEEEEECC---CCCCCHHHHC---
T ss_conf ----59830999884788998652597-48899851------58----8864--5799999899---9888778957---
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHCC
Q ss_conf 06828985047653036789999871773137898777628846830847898886225865699950449999985079
Q gi|254780561|r 159 KPWKIIYQDPRTSTLGLGLLLWIQKIYGDNSAQVWKKIATKTATVTKGWTESYGFFLKGESDFVLSYSTSPGFYLLNYGQ 238 (338)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 238 (338)
T Consensus 135 -Gk~iaf~~~~StSG~l~P~~~L~~~~g~~~~~~f~~-----v~~~gshd~~~~aV~~G~~Dag~~~~~~~~-~~~~~~~ 207 (288)
T TIGR03431 135 -GKTFGFVDPNSTSGFLVPSYYLFKKNGIKPKEYFKK-----VTFSGSHEAAILAVANGTVDAATTNDENLD-RMIRKGQ 207 (288)
T ss_pred -CCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHH-----EEECCCHHHHHHHHHCCCCCEEEECHHHHH-HHHHCCC
T ss_conf -987660287411113999999998659972545531-----331578789999998599329983388899-9997479
Q ss_pred C----CEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCC----HHHHHHHH
Q ss_conf 9----737883169808888642433789998999999999639----99999988
Q gi|254780561|r 239 D----DYVAALFSEGHYLQIEVAAQLVRSKQPQLAQEFMQFMIS----PSFQRILP 286 (338)
Q Consensus 239 ~----~~~~~~~~eG~~~~~~~~~i~k~a~n~~~A~~Fi~flls----~e~Q~~~a 286 (338)
T Consensus 208 ~~~~~~lrvi~~S~~--iP~~~~~v~~~l-~~~~~~~i~~all~l~~~d~~~~~~l 260 (288)
T TIGR03431 208 PDAMEDLRIIWKSPL--IPNGPIVYRKDL-PADLKAKIRKAFLNYHKTDKACFEKI 260 (288)
T ss_pred CCHHHCEEEEEECCC--CCCCCEEEECCC-CHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 630313699986788--887718996999-99999999999980786787689987