HHsearch alignment for GI: 254780561 and conserved domain: pfam03401
>pfam03401 Bug Tripartite tricarboxylate transporter family receptor. These probable extra-cytoplasmic solute receptors are strongly overrepresented in several beta-proteobacteria. This family, formerly known as Bug - Bordetella uptake gene (bug) product - is a family of bacterial tripartite tricarboxylate receptors of the extracytoplasmic solute binding receptor-dependent transporter group of families, distinct from the ABC and TRAP-T families. The TctABC system has been characterized in S. typhimurium, and TctC is the extracytoplasmic tricarboxylate-binding receptor which binds the transporters TctA and TctB, two integral membrane proteins. Complete three-component systems are found only in bacteria.
Probab=95.28 E-value=0.18 Score=26.81 Aligned_cols=245 Identities=12% Similarity=0.078 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHCCEEEEEECC-CHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCC
Q ss_conf 889999998848879999728-8689997887531266410110133378999887521261367700021000124321
Q gi|254780561|r 48 PKIKQAFERKCNCELKLIGLS-DGVALLNKLRMEGENSAADIVLGFDNNLIDLARKTGLFAKSNIDASQLKLPIKWDDDI 126 (338)
Q Consensus 48 ~~i~~~Fek~~gikV~~~~~~-~~~~~~~~~~a~~~~~~~Dv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 126 (338)
T Consensus 3 R~~a~~l~~~lG~~vvV~N~pGagG~ig~~~v~~a~~DGyTl~~~~~~~~~~~~~~~~~--~~~~-~~d--------f~p 71 (274)
T pfam03401 3 RALAQGMSKQLGQPVIVENKPGAGGIIGADAVAKAAPDGYTILLGSTGLAVAPHLYPNL--PYDP-IKD--------FTP 71 (274)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCC--CCCC-HHH--------HHH
T ss_conf 89999999986998799966983069999999808999988999467898768884347--8870-887--------675
Q ss_pred CCCEEEEEEHHHHCCCCCCCCCCCHHHHCCCC--CCCEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEE
Q ss_conf 15324310001100111245876456521200--0682898504765303678999987177313789877762884683
Q gi|254780561|r 127 FVPYDYGYLAFIYDKRQITQPPKNFDELINST--KPWKIIYQDPRTSTLGLGLLLWIQKIYGDNSAQVWKKIATKTATVT 204 (338)
Q Consensus 127 ~~~~~~~~~~~~y~~~~~~~~p~s~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (338)
T Consensus 72 ia~~~~~~~~l~v~~d---sp~~t~~dli~~ak~~Pg~~~~g~~G~gs~~hl~~~~l~~~~G~~----------~~~Vpy 138 (274)
T pfam03401 72 VSLLATSPMVLVVPAD---SPFKTLQELVAYAKANPGKLTFASAGIGTSNHLAGELLASKAGVQ----------LSHVPY 138 (274)
T ss_pred HHHHHCCCEEEEECCC---CCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCC----------EEEECC
T ss_conf 8865016358897799---975689999999984899658732788863189999999970996----------488346
Q ss_pred CCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEEECC-------------C-C----EEEEEEEEEEECCCCCH
Q ss_conf 0847898886225865699950449999985079973788316-------------9-8----08888642433789998
Q gi|254780561|r 205 KGWTESYGFFLKGESDFVLSYSTSPGFYLLNYGQDDYVAALFS-------------E-G----HYLQIEVAAQLVRSKQP 266 (338)
Q Consensus 205 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------e-G----~~~~~~~~~i~k~a~n~ 266 (338)
T Consensus 139 ~G~~~~~~allgG~vd~~~~~~~~~-~~~v~~G~lr~Lav~~~~R~~~~PdVPT~~E~G~~~~~~~~w~g~~ap~gtP~~ 217 (274)
T pfam03401 139 KGSSPALQDLLGGRVDMMIDSLTST-APYIKAGKLRALAVTSPKRSPQLPDVPTVAELGLKGFEAGVWFGLVAPKGTPPA 217 (274)
T ss_pred CCCHHHHHHHHCCEEEEEEECCHHH-HHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEEEEEECCCCCHH
T ss_conf 7832668998678445998351320-445417982599997575675448999768848787147888887634988999
Q ss_pred ---HHHHHHHHHHCCHHHHHHHHHCCCEEECCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf ---99999999963999999988504505055765882134122322234789899999999999999998741
Q gi|254780561|r 267 ---QLAQEFMQFMISPSFQRILPTTNWMYPVVDISMPDVYQAIRIPQKSLRFNAEETTRYRNQWISSWQNAVSR 337 (338)
Q Consensus 267 ---~~A~~Fi~flls~e~Q~~~a~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~v~~ 337 (338)
T Consensus 218 ~~~~l~~a~~~~~~dpe~~~~~~~~g~-~-------------------~~~~~~~e~~~~~~~e~~~~~~l~k~ 271 (274)
T pfam03401 218 VVEKLNDAIKKALKDPEVVERLANLGM-E-------------------PVPGTPQQLAQFIQAEVKRWGPLIQE 271 (274)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHCCC-C-------------------CCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999749999999997789-5-------------------78899999999999999999999998